May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
MDTN - MDTP
UniProt: P32716 - P32714
Length: 831
Sequences: 1916
Seq/Len: 2.45
I_Prob: 0.99
MDTN - Multidrug resistance protein MdtN
Paralog alert: 0.81 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: AAEA ACRA ACRE EMRA EMRK MACA MDTA MDTE MDTN YBHG YDHJ YHII YIAV YIBH 		MDTP - Multidrug resistance outer membrane protein MdtP
Paralog alert: 0.84 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: CUSC MDTP MDTQ TOLC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
146_E 431_A 2.46 0.99
146_E 223_S 1.78 0.95
142_P 227_H 1.46 0.84
150_S 231_A 1.27 0.72
148_F 431_A 1.03 0.46
142_P 435_R 0.89 0.30
324_K 186_L 0.89 0.30
44_A 454_E 0.86 0.27
65_T 150_F 0.86 0.27
148_F 432_A 0.80 0.21
219_V 109_A 0.79 0.20
239_L 242_I 0.78 0.19
219_V 107_Q 0.77 0.18
224_T 329_F 0.76 0.18
239_L 105_Q 0.76 0.17
93_A 155_L 0.74 0.16
143_L 229_L 0.73 0.16
271_S 446_A 0.73 0.15
148_F 220_A 0.71 0.14
334_A 444_T 0.70 0.13
211_V 116_R 0.70 0.13
213_A 428_A 0.70 0.13
338_A 81_H 0.69 0.12
264_P 149_L 0.69 0.12
105_T 444_T 0.69 0.12
148_F 428_A 0.68 0.12
202_T 471_L 0.67 0.11
147_G 383_M 0.67 0.11
124_E 246_D 0.67 0.11
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0327 seconds.