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OPENSEQ.org

BASS - PHNF
UniProt: P30844 - P16684
Length: 604
Sequences: 323
Seq/Len: 0.61
I_Prob: 0.00

BASS - Sensor protein BasS
Paralog alert: 0.90 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: ATOS BAES BASS CPXA CREC CUSS DCUS DPIB ENVZ GLRK NTRB PHOQ PHOR QSEC RSTB YEDV ZRAS
PHNF - Probable transcriptional regulator PhnF
Paralog alert: 0.83 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: FRLR MNGR PHNF YEGW YIDP YIHL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
347_T 127_E 1.03 0.00
213_L 109_V 1.03 0.00
289_V 58_Q 1.00 0.00
125_V 113_A 0.99 0.00
347_T 34_Y 0.96 0.00
98_L 206_P 0.95 0.00
79_L 150_F 0.95 0.00
351_V 203_N 0.94 0.00
77_V 75_V 0.93 0.00
351_V 19_A 0.93 0.00
351_V 222_P 0.93 0.00
102_L 52_L 0.89 0.00
285_A 238_T 0.88 0.00
212_K 106_L 0.84 0.00
333_H 196_C 0.84 0.00
353_L 111_R 0.84 0.00
95_L 96_D 0.84 0.00
125_V 171_L 0.84 0.00
285_A 233_D 0.83 0.00
136_L 27_Q 0.83 0.00
333_H 140_G 0.82 0.00
226_S 182_S 0.81 0.00
287_M 35_L 0.80 0.00
306_K 140_G 0.80 0.00
197_A 222_P 0.79 0.00
105_R 96_D 0.79 0.00
136_L 126_G 0.78 0.00
289_V 122_G 0.78 0.00
353_L 185_R 0.77 0.00
184_D 223_A 0.77 0.00
158_L 101_P 0.77 0.00
275_I 171_L 0.77 0.00
289_V 27_Q 0.76 0.00
75_F 129_V 0.76 0.00
216_D 13_R 0.76 0.00
75_F 132_L 0.76 0.00
81_L 186_I 0.76 0.00
327_R 98_G 0.75 0.00
289_V 223_A 0.75 0.00
109_N 31_C 0.75 0.00
109_N 120_A 0.75 0.00
289_V 100_H 0.75 0.00
81_L 222_P 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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