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OPENSEQ.org

MENC - RHMR
UniProt: P29208 - P77732
Length: 580
Sequences: 346
Seq/Len: 0.63
I_Prob: 0.00

MENC - o-succinylbenzoate synthase
Paralog alert: 0.56 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: AEEP DGOD GUDD GUDX MENC RHMD RSPA
RHMR - Uncharacterized HTH-type transcriptional regulator RhmR
Paralog alert: 0.70 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: ALLR ICLR KDGR MHPR RHMR YAGI YIAJ YJHI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
210_I 114_I 1.14 0.00
189_L 185_R 0.97 0.00
85_F 55_L 0.97 0.00
130_A 75_H 0.95 0.00
34_L 155_S 0.95 0.00
236_P 36_G 0.94 0.00
34_L 33_D 0.94 0.00
97_T 31_I 0.94 0.00
198_D 71_E 0.93 0.00
35_R 238_A 0.91 0.00
97_T 142_K 0.86 0.00
275_A 17_L 0.85 0.00
144_M 25_P 0.85 0.00
257_L 41_T 0.85 0.00
229_V 30_T 0.83 0.00
279_A 174_Q 0.83 0.00
177_Y 202_V 0.82 0.00
210_I 53_R 0.82 0.00
232_V 211_N 0.81 0.00
86_G 238_A 0.81 0.00
236_P 202_V 0.81 0.00
45_I 38_P 0.81 0.00
295_M 215_A 0.81 0.00
158_L 23_I 0.80 0.00
160_L 24_G 0.80 0.00
156_L 178_E 0.80 0.00
155_D 40_S 0.80 0.00
202_F 43_Y 0.78 0.00
210_I 33_D 0.78 0.00
107_A 14_I 0.77 0.00
210_I 170_I 0.77 0.00
67_V 42_A 0.77 0.00
144_M 156_I 0.76 0.00
256_G 16_I 0.76 0.00
160_L 249_L 0.76 0.00
73_G 82_L 0.76 0.00
119_L 182_R 0.75 0.00
181_D 84_E 0.75 0.00
67_V 14_I 0.74 0.00
248_Q 55_L 0.74 0.00
140_V 51_R 0.74 0.00
243_E 130_G 0.73 0.00
119_L 96_T 0.73 0.00
52_S 10_L 0.73 0.00
217_R 9_A 0.72 0.00
269_L 244_D 0.72 0.00
279_A 220_V 0.72 0.00
42_W 36_G 0.72 0.00
151_E 17_L 0.72 0.00
236_P 177_H 0.72 0.00
148_L 14_I 0.71 0.00
109_L 44_L 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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