May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

MNME - RL34
UniProt: P25522 - P0A7P5
Length: 500
Sequences: 532
Seq/Len: 1.07
I_Prob: 0.01

MNME - tRNA modification GTPase MnmE
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: MNME
RL34 - 50S ribosomal protein L34
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL34
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
128_A 19_R 1.39 0.01
289_A 10_L 1.36 0.01
289_A 5_F 1.33 0.01
248_A 32_A 1.21 0.00
90_L 33_R 1.18 0.00
167_R 3_R 1.17 0.00
37_L 5_F 1.14 0.00
112_S 23_A 1.13 0.00
58_V 31_L 1.11 0.00
135_A 14_R 1.04 0.00
69_G 33_R 1.02 0.00
298_R 5_F 1.02 0.00
167_R 5_F 1.01 0.00
52_K 5_F 1.00 0.00
365_V 13_N 0.98 0.00
148_L 2_K 0.96 0.00
283_R 41_R 0.96 0.00
227_A 5_F 0.93 0.00
21_I 33_R 0.92 0.00
170_V 3_R 0.92 0.00
284_I 19_R 0.92 0.00
175_D 38_G 0.92 0.00
129_I 33_R 0.92 0.00
178_D 30_V 0.92 0.00
163_L 33_R 0.91 0.00
321_I 15_S 0.91 0.00
331_T 30_V 0.90 0.00
121_L 31_L 0.89 0.00
440_D 32_A 0.89 0.00
149_Q 19_R 0.88 0.00
199_D 26_N 0.86 0.00
303_V 33_R 0.86 0.00
357_L 31_L 0.85 0.00
13_P 33_R 0.85 0.00
428_Q 3_R 0.85 0.00
418_L 14_R 0.84 0.00
255_L 5_F 0.84 0.00
239_R 31_L 0.83 0.00
296_A 38_G 0.83 0.00
22_L 33_R 0.83 0.00
354_L 5_F 0.82 0.00
137_S 19_R 0.82 0.00
292_E 10_L 0.82 0.00
354_L 44_V 0.82 0.00
443_L 3_R 0.81 0.00
248_A 33_R 0.81 0.00
452_I 3_R 0.81 0.00
432_E 11_K 0.81 0.00
20_G 36_A 0.80 0.00
93_L 14_R 0.80 0.00
428_Q 30_V 0.80 0.00
35_T 31_L 0.80 0.00
269_I 9_V 0.79 0.00
414_W 43_T 0.79 0.00
20_G 24_T 0.78 0.00
301_F 15_S 0.78 0.00
326_A 8_S 0.78 0.00
68_P 13_N 0.78 0.00
176_F 3_R 0.77 0.00
248_A 24_T 0.77 0.00
68_P 41_R 0.77 0.00
197_I 9_V 0.77 0.00
180_E 5_F 0.77 0.00
301_F 33_R 0.77 0.00
50_P 31_L 0.77 0.00
212_L 44_V 0.77 0.00
187_G 23_A 0.76 0.00
177_P 30_V 0.76 0.00
436_E 30_V 0.76 0.00
133_I 1_M 0.76 0.00
262_D 5_F 0.75 0.00
332_V 29_Q 0.75 0.00
312_D 31_L 0.75 0.00
160_V 9_V 0.75 0.00
136_S 41_R 0.75 0.00
276_E 25_K 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0398 seconds.