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OPENSEQ.org

NLPC - YDIV
UniProt: P23898 - P76204
Length: 391
Sequences: 237
Seq/Len: 0.63
I_Prob: 0.00

NLPC - Probable endopeptidase NlpC
Paralog alert: 0.58 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: NLPC SPR
YDIV - Putative anti-FlhC(2)FlhD(4) factor YdiV
Paralog alert: 0.90 [within 20: 0.47] - ratio of genomes with paralogs
Cluster includes: ADRB CSRD DOSP GMR RTN YAHA YCGF YCGG YDIV YHJH YHJK YJCC YLAB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
128_A 134_S 1.15 0.00
65_F 114_I 1.04 0.00
70_M 80_L 1.04 0.00
84_Q 197_I 1.03 0.00
95_D 104_L 0.97 0.00
56_T 174_T 0.97 0.00
76_L 162_V 0.96 0.00
139_L 141_L 0.95 0.00
92_I 158_L 0.94 0.00
131_S 197_I 0.90 0.00
139_L 50_A 0.90 0.00
91_Q 112_L 0.89 0.00
96_E 196_I 0.89 0.00
84_Q 54_E 0.88 0.00
55_M 156_D 0.86 0.00
91_Q 86_L 0.85 0.00
51_R 203_T 0.83 0.00
64_G 235_V 0.82 0.00
66_V 193_C 0.82 0.00
139_L 44_P 0.81 0.00
55_M 227_P 0.81 0.00
142_V 133_L 0.81 0.00
82_T 91_A 0.81 0.00
103_V 51_Q 0.80 0.00
65_F 71_C 0.80 0.00
93_D 196_I 0.80 0.00
124_Q 110_I 0.80 0.00
93_D 21_N 0.80 0.00
124_Q 225_A 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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