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OPENSEQ.org

NLPC - YEHX
UniProt: P23898 - P33360
Length: 462
Sequences: 344
Seq/Len: 0.89
I_Prob: 0.00

NLPC - Probable endopeptidase NlpC
Paralog alert: 0.58 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: NLPC SPR
YEHX - Putative osmoprotectant uptake system ATP-binding protein YehX
Paralog alert: 0.94 [within 20: 0.63] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
134_V 26_E 1.11 0.00
122_N 122_G 0.87 0.00
38_L 94_Q 0.81 0.00
118_I 47_I 0.80 0.00
103_V 120_L 0.77 0.00
142_V 26_E 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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