May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

GABT - YGAV
UniProt: P22256 - P77295
Length: 525
Sequences: 348
Seq/Len: 0.68
I_Prob: 0.00

GABT - 4-aminobutyrate aminotransferase GabT
Paralog alert: 0.89 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: ARGD ASTC BIOA GABT GSA PAT PUUE
YGAV - Probable HTH-type transcriptional regulator YgaV
Paralog alert: 0.75 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: ARSR YGAV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
348_V 51_S 1.19 0.00
260_A 44_L 1.04 0.00
87_L 53_S 0.96 0.00
270_I 66_G 0.92 0.00
329_Q 74_A 0.90 0.00
309_L 58_H 0.88 0.00
261_P 46_R 0.84 0.00
243_S 54_A 0.83 0.00
337_A 75_Q 0.82 0.00
138_Y 22_S 0.82 0.00
409_Q 72_R 0.79 0.00
62_V 67_L 0.78 0.00
100_D 68_I 0.78 0.00
231_E 68_I 0.77 0.00
371_K 29_I 0.76 0.00
229_C 50_L 0.75 0.00
233_G 22_S 0.74 0.00
184_I 48_T 0.73 0.00
131_T 30_L 0.73 0.00
236_L 66_G 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0314 seconds.