May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ARGD - HEM4
UniProt: P18335 - P09126
Length: 652
Sequences: 432
Seq/Len: 0.70
I_Prob: 0.00

ARGD - Acetylornithine/succinyldiaminopimelate aminotransferase
Paralog alert: 0.89 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: ARGD ASTC BIOA GABT GSA PAT PUUE
HEM4 - Uroporphyrinogen-III synthase
Paralog alert: 0.13 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: HEM4
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
135_I 109_R 1.19 0.00
197_G 138_R 1.13 0.00
116_F 47_L 1.04 0.00
164_K 80_R 1.04 0.00
252_T 113_E 1.02 0.00
350_Y 4_L 1.02 0.00
197_G 192_Q 0.99 0.00
106_N 236_A 0.97 0.00
30_K 2_S 0.96 0.00
112_N 137_G 0.95 0.00
239_F 134_G 0.95 0.00
369_L 134_G 0.94 0.00
112_N 152_V 0.92 0.00
35_R 2_S 0.90 0.00
388_D 26_A 0.89 0.00
252_T 138_R 0.89 0.00
261_F 113_E 0.86 0.00
385_E 184_V 0.85 0.00
296_G 50_L 0.85 0.00
202_T 85_F 0.85 0.00
66_A 143_D 0.84 0.00
197_G 11_A 0.83 0.00
361_G 22_L 0.83 0.00
151_V 188_E 0.83 0.00
138_H 50_L 0.82 0.00
384_V 237_D 0.81 0.00
70_Q 75_D 0.81 0.00
135_I 116_L 0.81 0.00
250_I 242_L 0.81 0.00
96_A 85_F 0.81 0.00
271_E 245_L 0.81 0.00
257_L 30_P 0.81 0.00
263_I 193_L 0.81 0.00
133_K 130_L 0.80 0.00
258_G 103_I 0.80 0.00
207_E 241_L 0.80 0.00
73_T 233_A 0.80 0.00
190_V 56_L 0.80 0.00
203_A 3_I 0.80 0.00
356_D 94_A 0.79 0.00
29_V 84_Y 0.79 0.00
180_K 96_H 0.79 0.00
256_A 87_I 0.79 0.00
202_T 93_L 0.78 0.00
335_I 147_A 0.78 0.00
343_G 77_K 0.77 0.00
37_W 139_E 0.77 0.00
221_A 19_L 0.77 0.00
206_P 140_L 0.77 0.00
356_D 56_L 0.76 0.00
246_V 240_A 0.76 0.00
216_C 10_P 0.76 0.00
31_G 143_D 0.76 0.00
167_D 132_L 0.75 0.00
246_V 228_Q 0.75 0.00
216_C 111_I 0.75 0.00
179_V 181_M 0.75 0.00
72_E 100_G 0.74 0.00
390_D 90_T 0.74 0.00
290_L 56_L 0.74 0.00
169_I 189_M 0.73 0.00
384_V 86_A 0.73 0.00
218_Q 191_Q 0.73 0.00
201_V 233_A 0.73 0.00
36_I 245_L 0.73 0.00
67_L 212_L 0.73 0.00
361_G 87_I 0.73 0.00
220_Q 86_A 0.72 0.00
311_I 244_A 0.72 0.00
217_D 63_A 0.72 0.00
34_S 54_D 0.72 0.00
243_H 239_D 0.72 0.00
190_V 95_L 0.71 0.00
130_F 137_G 0.71 0.00
214_E 147_A 0.71 0.00
250_I 50_L 0.71 0.00
328_Q 90_T 0.71 0.00
263_I 30_P 0.71 0.00
203_A 90_T 0.71 0.00
358_L 115_L 0.70 0.00
54_T 19_L 0.70 0.00
197_G 103_I 0.70 0.00
133_K 184_V 0.70 0.00
184_D 159_Q 0.70 0.00
380_P 45_D 0.70 0.00
89_L 56_L 0.69 0.00
202_T 57_F 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0509 seconds.