May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

CYSA - CYSP
UniProt: P16676 - P16700
Length: 703
Sequences: 1185
Seq/Len: 1.80
I_Prob: 0.00

CYSA - Sulfate/thiosulfate import ATP-binding protein CysA
Paralog alert: 0.82 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
CYSP - Thiosulfate-binding protein
Paralog alert: 0.63 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
122_E 275_Q 0.91 0.00
224_V 250_W 0.84 0.00
237_M 250_W 0.81 0.00
97_F 66_H 0.81 0.00
310_V 46_P 0.79 0.00
293_P 60_L 0.78 0.00
116_K 291_E 0.77 0.00
147_L 64_Q 0.77 0.00
203_V 84_V 0.76 0.00
78_F 158_A 0.76 0.00
51_L 241_N 0.75 0.00
210_M 100_G 0.75 0.00
5_I 236_V 0.74 0.00
280_V 262_K 0.74 0.00
202_E 147_L 0.74 0.00
127_A 262_K 0.73 0.00
209_V 52_A 0.72 0.00
154_E 125_L 0.72 0.00
109_N 282_D 0.72 0.00
321_T 273_S 0.72 0.00
62_H 273_S 0.72 0.00
59_I 285_Y 0.71 0.00
10_K 84_V 0.71 0.00
32_A 224_I 0.71 0.00
235_E 60_L 0.71 0.00
150_A 70_S 0.70 0.00
296_V 236_V 0.70 0.00
3_I 235_V 0.69 0.00
157_I 149_F 0.69 0.00
186_L 187_F 0.69 0.00
86_F 202_T 0.68 0.00
3_I 68_G 0.68 0.00
55_T 182_Q 0.68 0.00
22_S 62_I 0.67 0.00
166_A 246_F 0.67 0.00
18_L 164_A 0.67 0.00
223_Q 178_G 0.66 0.00
100_T 167_G 0.66 0.00
90_T 223_N 0.66 0.00
86_F 217_F 0.66 0.00
331_Q 27_E 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0987 seconds.