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OPENSEQ.org

BIOD1 - CSDA
UniProt: P13000 - Q46925
Length: 626
Sequences: 837
Seq/Len: 1.47
I_Prob: 0.01

BIOD1 - ATP-dependent dethiobiotin synthetase BioD 1
Paralog alert: 0.29 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: BIOD1 BIOD2
CSDA - Cysteine sulfinate desulfinase
Paralog alert: 0.90 [within 20: 0.48] - ratio of genomes with paralogs
Cluster includes: AAT ALAA ALAC ARNB AVTA CSDA HIS8 ISCS MALY RFFA SERC SUFS TYRB YBDL YDCR YJIR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
84_H 221_H 1.24 0.01
88_A 215_F 1.10 0.00
170_L 374_A 0.98 0.00
13_E 367_G 0.94 0.00
75_Y 108_P 0.89 0.00
187_E 385_V 0.88 0.00
11_D 298_E 0.88 0.00
156_A 163_I 0.86 0.00
86_I 390_N 0.85 0.00
153_I 227_T 0.85 0.00
134_W 377_A 0.85 0.00
41_A 168_Q 0.84 0.00
13_E 331_F 0.84 0.00
140_L 153_L 0.82 0.00
80_P 111_E 0.82 0.00
127_D 240_E 0.81 0.00
20_S 106_L 0.81 0.00
153_I 164_L 0.81 0.00
135_V 167_G 0.81 0.00
192_L 164_L 0.80 0.00
201_L 273_T 0.80 0.00
13_E 396_L 0.80 0.00
143_I 348_Y 0.80 0.00
8_T 304_L 0.79 0.00
8_T 97_V 0.78 0.00
18_V 200_G 0.78 0.00
80_P 302_R 0.77 0.00
173_W 329_L 0.77 0.00
195_M 180_A 0.76 0.00
40_V 347_E 0.76 0.00
5_Y 352_L 0.76 0.00
123_T 57_E 0.75 0.00
42_S 113_I 0.75 0.00
132_A 197_G 0.74 0.00
19_A 166_L 0.73 0.00
170_L 235_K 0.73 0.00
7_V 208_V 0.73 0.00
13_E 355_G 0.73 0.00
80_P 226_P 0.73 0.00
61_R 108_P 0.72 0.00
59_L 181_R 0.72 0.00
88_A 336_V 0.72 0.00
165_H 382_K 0.71 0.00
77_F 85_V 0.71 0.00
159_T 218_F 0.71 0.00
118_A 271_A 0.71 0.00
127_D 310_D 0.71 0.00
153_I 269_L 0.71 0.00
65_L 332_D 0.70 0.00
14_V 391_A 0.70 0.00
48_P 340_D 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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