May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RIMK - RSME
UniProt: P0C0U4 - P0AGL7
Length: 543
Sequences: 320
Seq/Len: 0.60
I_Prob: 0.00

RIMK - Ribosomal protein S6 modification protein
Paralog alert: 0.95 [within 20: 0.52] - ratio of genomes with paralogs
Cluster includes: ACCC DDLA DDLB GSHB PUR2 PURK PURT RIMK
RSME - Ribosomal RNA small subunit methyltransferase E
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RSME
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
270_I 102_L 1.16 0.00
44_A 221_V 1.14 0.00
240_M 134_I 1.14 0.00
15_C 115_C 1.12 0.00
227_P 58_S 1.10 0.00
176_V 150_I 1.09 0.00
118_G 106_L 1.09 0.00
160_A 179_I 1.08 0.00
277_D 227_T 1.07 0.00
180_I 142_C 1.05 0.00
231_E 215_I 1.03 0.00
56_P 21_C 1.02 0.00
291_T 36_P 1.00 0.00
151_V 75_E 0.99 0.00
21_A 228_A 0.96 0.00
160_A 48_Q 0.96 0.00
21_A 239_F 0.95 0.00
290_A 166_G 0.94 0.00
160_A 221_V 0.94 0.00
116_V 63_E 0.92 0.00
130_I 40_L 0.92 0.00
116_V 228_A 0.91 0.00
87_P 206_M 0.91 0.00
57_H 137_A 0.91 0.00
180_I 202_D 0.91 0.00
157_R 215_I 0.90 0.00
61_V 18_I 0.89 0.00
235_K 150_I 0.89 0.00
255_G 198_G 0.89 0.00
124_D 161_A 0.88 0.00
180_I 176_S 0.88 0.00
46_S 40_L 0.88 0.00
131_D 134_I 0.87 0.00
103_S 100_I 0.87 0.00
130_I 233_T 0.87 0.00
291_T 65_K 0.87 0.00
116_V 214_D 0.86 0.00
151_V 208_A 0.86 0.00
270_I 82_L 0.86 0.00
259_M 169_L 0.86 0.00
237_A 145_N 0.85 0.00
195_D 123_R 0.85 0.00
140_V 173_P 0.85 0.00
21_A 215_I 0.85 0.00
158_Q 191_L 0.85 0.00
289_H 174_R 0.85 0.00
16_K 188_R 0.84 0.00
97_A 142_C 0.84 0.00
35_L 120_D 0.84 0.00
270_I 108_T 0.84 0.00
81_E 106_L 0.84 0.00
249_I 227_T 0.84 0.00
125_D 181_T 0.84 0.00
34_P 130_Q 0.83 0.00
219_A 88_R 0.83 0.00
160_A 66_V 0.83 0.00
185_G 66_V 0.82 0.00
178_E 227_T 0.82 0.00
279_A 206_M 0.82 0.00
161_E 66_V 0.82 0.00
178_E 44_D 0.82 0.00
10_G 232_I 0.81 0.00
116_V 129_Q 0.81 0.00
208_G 172_H 0.81 0.00
288_R 50_F 0.80 0.00
233_A 60_K 0.80 0.00
198_V 124_L 0.80 0.00
291_T 68_E 0.80 0.00
104_M 95_T 0.80 0.00
127_S 17_H 0.80 0.00
140_V 167_L 0.80 0.00
157_R 40_L 0.80 0.00
174_I 238_R 0.80 0.00
87_P 235_L 0.80 0.00
123_P 80_I 0.79 0.00
194_G 204_I 0.79 0.00
258_V 143_G 0.79 0.00
71_F 235_L 0.79 0.00
61_V 65_K 0.79 0.00
40_N 51_D 0.79 0.00
276_I 56_S 0.79 0.00
46_S 58_S 0.79 0.00
276_I 228_A 0.79 0.00
289_H 18_I 0.78 0.00
226_T 158_A 0.78 0.00
180_I 50_F 0.78 0.00
82_M 66_V 0.78 0.00
39_M 189_V 0.78 0.00
134_G 161_A 0.78 0.00
125_D 72_D 0.78 0.00
133_V 38_Q 0.78 0.00
61_V 177_N 0.78 0.00
139_V 110_L 0.78 0.00
154_A 100_I 0.78 0.00
103_S 116_G 0.78 0.00
231_E 60_K 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.185 seconds.