May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

SAPC - YCIT
UniProt: P0AGH5 - P76034
Length: 545
Sequences: 340
Seq/Len: 0.64
I_Prob: 0.00

SAPC - Peptide transport system permease protein SapC
Paralog alert: 0.77 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
YCIT - Uncharacterized HTH-type transcriptional regulator YciT
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
94_G 199_V 1.10 0.00
208_V 28_G 1.03 0.00
23_F 90_I 1.01 0.00
44_I 69_N 1.00 0.00
196_D 27_T 0.93 0.00
77_F 47_L 0.91 0.00
202_N 102_A 0.90 0.00
134_I 82_S 0.90 0.00
229_L 92_I 0.89 0.00
280_V 142_K 0.88 0.00
67_S 20_V 0.88 0.00
289_R 87_G 0.87 0.00
113_G 47_L 0.87 0.00
195_L 77_A 0.82 0.00
283_L 27_T 0.82 0.00
166_W 86_P 0.82 0.00
228_I 100_L 0.82 0.00
101_G 19_S 0.82 0.00
88_L 204_S 0.81 0.00
276_S 98_N 0.81 0.00
177_I 125_L 0.80 0.00
153_F 38_L 0.79 0.00
291_I 136_G 0.79 0.00
222_R 93_E 0.79 0.00
288_R 87_G 0.78 0.00
194_R 102_A 0.78 0.00
188_E 8_I 0.78 0.00
167_L 151_T 0.77 0.00
141_I 5_Q 0.77 0.00
252_L 100_L 0.76 0.00
271_A 139_Y 0.76 0.00
192_A 16_G 0.76 0.00
277_V 92_I 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0415 seconds.