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OPENSEQ.org

YBHR - YBIH
UniProt: P0AFP9 - P0ACU0
Length: 591
Sequences: 386
Seq/Len: 0.67
I_Prob: 0.00

YBHR - Inner membrane transport permease YbhR
Paralog alert: 0.78 [within 20: 0.45] - ratio of genomes with paralogs
Cluster includes: YBHR YBHS YHHJ
YBIH - Uncharacterized HTH-type transcriptional regulator YbiH
Paralog alert: 0.73 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
338_L 153_A 1.14 0.00
64_L 99_I 1.13 0.00
274_I 204_N 1.13 0.00
171_Y 18_I 1.08 0.00
241_G 205_Q 1.07 0.00
331_I 148_L 1.05 0.00
190_I 24_Q 1.04 0.00
8_L 48_I 1.04 0.00
32_I 154_A 1.04 0.00
43_L 174_G 1.03 0.00
82_S 176_I 1.01 0.00
349_L 136_V 0.98 0.00
61_S 97_E 0.97 0.00
160_V 33_T 0.97 0.00
54_D 199_K 0.96 0.00
345_L 164_R 0.96 0.00
132_A 172_L 0.96 0.00
195_S 57_D 0.95 0.00
246_Q 19_A 0.95 0.00
31_L 40_Q 0.95 0.00
255_L 37_I 0.94 0.00
354_T 172_L 0.94 0.00
154_P 153_A 0.94 0.00
277_L 98_L 0.94 0.00
34_V 125_E 0.93 0.00
314_N 172_L 0.93 0.00
337_S 52_F 0.93 0.00
262_I 157_G 0.93 0.00
276_S 22_L 0.93 0.00
90_I 148_L 0.92 0.00
106_S 43_Q 0.92 0.00
288_V 17_L 0.91 0.00
352_T 165_M 0.91 0.00
353_A 42_G 0.91 0.00
55_E 37_I 0.91 0.00
52_I 152_I 0.90 0.00
353_A 182_G 0.90 0.00
124_R 56_E 0.89 0.00
57_N 152_I 0.89 0.00
170_D 18_I 0.89 0.00
257_Y 197_E 0.88 0.00
280_T 216_Q 0.88 0.00
178_S 58_L 0.88 0.00
103_A 51_Y 0.88 0.00
87_R 33_T 0.88 0.00
99_V 150_R 0.88 0.00
68_F 30_M 0.87 0.00
238_L 18_I 0.87 0.00
117_L 18_I 0.87 0.00
66_Q 153_A 0.87 0.00
190_I 105_N 0.86 0.00
364_R 40_Q 0.85 0.00
307_N 51_Y 0.85 0.00
331_I 123_S 0.85 0.00
101_F 103_C 0.85 0.00
31_L 196_D 0.85 0.00
164_W 62_C 0.84 0.00
364_R 202_L 0.84 0.00
117_L 42_G 0.84 0.00
333_L 157_G 0.84 0.00
351_I 38_A 0.84 0.00
270_F 38_A 0.84 0.00
262_I 58_L 0.84 0.00
360_Y 95_I 0.84 0.00
244_A 22_L 0.84 0.00
261_V 48_I 0.84 0.00
81_K 139_Q 0.83 0.00
99_V 82_E 0.83 0.00
109_L 99_I 0.83 0.00
323_H 48_I 0.83 0.00
176_V 70_I 0.83 0.00
280_T 22_L 0.82 0.00
159_L 30_M 0.82 0.00
140_V 92_R 0.82 0.00
358_A 27_E 0.82 0.00
358_A 98_L 0.82 0.00
336_A 172_L 0.82 0.00
99_V 60_L 0.82 0.00
92_T 39_A 0.82 0.00
254_A 172_L 0.81 0.00
119_L 205_Q 0.81 0.00
341_V 214_I 0.80 0.00
165_Y 124_R 0.80 0.00
292_M 72_E 0.80 0.00
314_N 56_E 0.80 0.00
236_I 18_I 0.80 0.00
195_S 17_L 0.79 0.00
99_V 202_L 0.79 0.00
82_S 26_G 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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