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OPENSEQ.org

NIKC - YBDH
UniProt: P0AFA9 - P45579
Length: 639
Sequences: 398
Seq/Len: 0.65
I_Prob: 0.00

NIKC - Nickel transport system permease protein NikC
Paralog alert: 0.90 [within 20: 0.63] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
YBDH - Uncharacterized oxidoreductase YbdH
Paralog alert: 0.78 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: ADH2 AROB EUTG FUCO GLDA YBDH YQHD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
204_M 90_V 1.08 0.00
170_R 132_W 1.05 0.00
139_I 35_S 1.02 0.00
88_L 53_L 0.96 0.00
257_N 311_L 0.91 0.00
228_I 327_V 0.88 0.00
40_D 15_Y 0.87 0.00
258_L 53_L 0.83 0.00
54_L 39_W 0.82 0.00
180_F 37_A 0.82 0.00
87_T 55_P 0.82 0.00
92_I 263_L 0.81 0.00
56_T 36_R 0.80 0.00
231_A 114_V 0.80 0.00
166_V 246_L 0.80 0.00
179_V 74_S 0.79 0.00
54_L 65_I 0.79 0.00
97_G 12_P 0.78 0.00
166_V 23_N 0.77 0.00
79_M 65_I 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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