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OPENSEQ.org

METF - RFFA
UniProt: P0AEZ1 - P27833
Length: 672
Sequences: 427
Seq/Len: 0.68
I_Prob: 0.00

METF - 5,10-methylenetetrahydrofolate reductase
Paralog alert: 0.12 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: METF
RFFA - Lipopolysaccharide biosynthesis protein RffA
Paralog alert: 0.93 [within 20: 0.55] - ratio of genomes with paralogs
Cluster includes: AAT ALAA ALAC ARNB AVTA CSDA HIS8 ISCS MALY RFFA SERC SUFS TYRB YBDL YDCR YJIR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
280_A 115_A 1.09 0.00
182_T 150_V 1.03 0.00
244_D 132_A 1.00 0.00
144_D 74_V 1.00 0.00
43_N 111_L 0.94 0.00
231_I 50_L 0.92 0.00
39_Q 132_A 0.90 0.00
211_I 172_I 0.90 0.00
131_Y 112_I 0.88 0.00
286_I 203_A 0.86 0.00
204_D 266_D 0.86 0.00
207_I 92_G 0.85 0.00
96_P 114_A 0.85 0.00
161_S 172_I 0.85 0.00
114_I 147_L 0.84 0.00
200_S 242_Y 0.84 0.00
96_P 299_D 0.83 0.00
231_I 125_P 0.83 0.00
238_M 36_C 0.82 0.00
43_N 47_A 0.82 0.00
207_I 108_D 0.81 0.00
56_V 70_P 0.81 0.00
56_V 41_E 0.81 0.00
211_I 364_Q 0.81 0.00
286_I 138_I 0.81 0.00
83_L 110_T 0.80 0.00
25_V 61_M 0.79 0.00
128_P 146_N 0.79 0.00
238_M 149_V 0.79 0.00
149_V 306_L 0.79 0.00
196_D 137_T 0.78 0.00
143_A 353_L 0.78 0.00
52_K 45_G 0.78 0.00
259_D 188_E 0.78 0.00
147_I 62_A 0.77 0.00
96_P 264_Y 0.77 0.00
171_R 254_N 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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