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OPENSEQ.org

GLPF - GLPK
UniProt: P0AER0 - P0A6F3
Length: 783
Sequences: 485
Seq/Len: 0.65
I_Prob: 0.00

GLPF - Glycerol uptake facilitator protein
Paralog alert: 0.52 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: AQPZ GLPF
GLPK - Glycerol kinase
Paralog alert: 0.75 [within 20: 0.17] - ratio of genomes with paralogs
Cluster includes: ARAB FUCK GLPK LSRK LYXK RHAB XYLB YGCE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
72_T 424_S 1.49 0.00
241_I 168_T 1.26 0.00
92_S 327_A 1.23 0.00
73_I 424_S 1.18 0.00
26_V 307_V 1.16 0.00
82_D 43_P 1.15 0.00
99_C 284_E 1.06 0.00
229_D 259_E 1.05 0.00
55_A 24_H 1.03 0.00
95_A 338_Q 0.98 0.00
94_V 459_D 0.97 0.00
77_L 202_D 0.97 0.00
39_F 424_S 0.97 0.00
169_D 185_T 0.96 0.00
29_V 49_D 0.96 0.00
71_V 176_Q 0.95 0.00
100_A 91_E 0.94 0.00
92_S 307_V 0.94 0.00
184_G 285_N 0.94 0.00
142_H 259_E 0.92 0.00
73_I 328_Y 0.92 0.00
89_F 295_P 0.91 0.00
161_G 21_V 0.91 0.00
65_A 315_Q 0.91 0.00
19_G 227_Q 0.89 0.00
158_I 408_R 0.88 0.00
11_C 327_A 0.88 0.00
155_I 112_I 0.87 0.00
47_I 369_T 0.87 0.00
49_G 29_I 0.87 0.00
15_F 338_Q 0.86 0.00
49_G 70_I 0.86 0.00
105_Y 50_P 0.85 0.00
134_T 307_V 0.85 0.00
245_I 64_V 0.85 0.00
150_A 176_Q 0.85 0.00
161_G 426_I 0.84 0.00
239_G 416_N 0.84 0.00
97_A 158_R 0.84 0.00
49_G 312_A 0.84 0.00
242_V 377_I 0.84 0.00
188_A 312_A 0.84 0.00
242_V 171_I 0.84 0.00
182_L 373_N 0.83 0.00
80_C 368_L 0.83 0.00
40_G 457_N 0.82 0.00
239_G 120_G 0.82 0.00
244_A 181_V 0.82 0.00
26_V 7_I 0.82 0.00
67_L 99_Y 0.82 0.00
62_V 238_I 0.82 0.00
184_G 368_L 0.82 0.00
51_G 142_V 0.81 0.00
55_A 387_Y 0.81 0.00
250_A 259_E 0.80 0.00
59_T 21_V 0.80 0.00
244_A 327_A 0.80 0.00
86_V 239_P 0.80 0.00
46_V 77_A 0.79 0.00
189_V 259_E 0.79 0.00
241_I 29_I 0.78 0.00
110_N 72_S 0.78 0.00
190_I 408_R 0.78 0.00
109_Y 92_K 0.78 0.00
160_M 209_D 0.77 0.00
49_G 43_P 0.77 0.00
59_T 50_P 0.77 0.00
226_G 78_I 0.77 0.00
64_G 379_R 0.77 0.00
244_A 429_T 0.77 0.00
235_V 118_R 0.77 0.00
249_F 133_I 0.77 0.00
124_G 98_I 0.76 0.00
235_V 24_H 0.76 0.00
181_L 42_K 0.76 0.00
192_A 111_E 0.75 0.00
205_A 150_E 0.75 0.00
214_A 307_V 0.75 0.00
63_S 272_M 0.75 0.00
187_I 473_P 0.75 0.00
154_V 174_M 0.75 0.00
205_A 307_V 0.75 0.00
235_V 459_D 0.75 0.00
163_I 196_H 0.75 0.00
33_K 291_I 0.75 0.00
164_L 23_D 0.74 0.00
66_H 295_P 0.74 0.00
86_V 327_A 0.74 0.00
152_E 251_L 0.74 0.00
47_I 77_A 0.73 0.00
12_I 42_K 0.73 0.00
187_I 356_Y 0.73 0.00
151_V 58_S 0.73 0.00
246_V 468_E 0.73 0.00
166_L 262_A 0.73 0.00
243_G 134_D 0.73 0.00
246_V 426_I 0.73 0.00
124_G 142_V 0.73 0.00
26_V 398_A 0.72 0.00
65_A 12_Q 0.72 0.00
202_M 383_E 0.72 0.00
13_A 155_R 0.72 0.00
22_I 273_L 0.72 0.00
247_G 480_R 0.72 0.00
241_I 118_R 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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