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GLNP - YEHX
UniProt: P0AEQ6 - P33360
Length: 527
Sequences: 4951
Seq/Len: 10.88
I_Prob: 0.96
GLNP - Glutamine transport system permease protein GlnP
Paralog alert: 0.91 [within 20: 0.54] - ratio of genomes with paralogs
Cluster includes: ARTM ARTQ GLNP GLTJ GLTK HISM HISQ METI PHNE SSUC TAUC YECS YEHW 		YEHX - Putative osmoprotectant uptake system ATP-binding protein YehX
Paralog alert: 0.94 [within 20: 0.63] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rlfAB:F:GContact Map
3tuiCHDG:AEBFContact Map
3d31AB:CDContact Map
2onkABGF:CHDIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
127_L 99_V 1.77 0.96
129_L 98_T 1.41 0.88
137_Y 101_Q 1.32 0.83
137_Y 98_T 1.25 0.79
127_L 87_F 1.15 0.70
117_H 140_Q 1.01 0.56
138_V 90_W 0.92 0.45
126_A 148_A 0.81 0.32
137_Y 90_W 0.76 0.27
119_G 85_G 0.75 0.26
138_V 98_T 0.71 0.21
117_H 83_S 0.64 0.15
129_L 102_L 0.64 0.15
122_E 45_K 0.61 0.13
126_A 48_N 0.60 0.13
137_Y 102_L 0.60 0.12
133_E 102_L 0.54 0.09
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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