May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

GCL - HYI
UniProt: P0AEP7 - P30147
Length: 851
Sequences: 584
Seq/Len: 0.71
I_Prob: 0.00

GCL - Glyoxylate carboligase
Paralog alert: 0.81 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: GCL ILVB ILVG ILVI MEND OXC POXB
HYI - Hydroxypyruvate isomerase
Paralog alert: 0.70 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: END4 FRLC HYI SGBU ULAE YCJR YGBM
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
299_V 53_K 1.20 0.00
209_V 203_L 1.12 0.00
418_A 211_R 1.12 0.00
208_I 98_G 1.06 0.00
535_F 137_D 1.01 0.00
275_F 85_D 1.00 0.00
275_F 26_Q 0.98 0.00
297_K 47_H 0.97 0.00
204_E 226_K 0.97 0.00
323_K 229_E 0.97 0.00
119_I 126_L 0.95 0.00
160_V 164_L 0.91 0.00
275_F 120_A 0.91 0.00
388_C 229_E 0.91 0.00
221_A 120_A 0.89 0.00
222_L 200_I 0.89 0.00
208_I 171_C 0.89 0.00
273_M 87_V 0.89 0.00
320_S 140_L 0.88 0.00
301_I 96_A 0.87 0.00
379_M 56_H 0.87 0.00
205_R 3_R 0.86 0.00
228_E 25_A 0.86 0.00
433_A 138_I 0.85 0.00
217_A 220_N 0.84 0.00
160_V 92_R 0.84 0.00
420_P 25_A 0.83 0.00
301_I 51_S 0.82 0.00
456_L 129_A 0.82 0.00
200_L 140_L 0.82 0.00
388_C 167_D 0.81 0.00
517_G 26_Q 0.81 0.00
12_Y 51_S 0.81 0.00
379_M 232_D 0.81 0.00
485_A 138_I 0.81 0.00
220_A 26_Q 0.80 0.00
301_I 120_A 0.80 0.00
200_L 47_H 0.79 0.00
385_R 24_A 0.79 0.00
205_R 46_K 0.79 0.00
203_A 31_G 0.79 0.00
299_V 225_F 0.79 0.00
198_E 167_D 0.78 0.00
551_V 117_Q 0.78 0.00
222_L 51_S 0.78 0.00
440_V 175_I 0.78 0.00
237_T 193_M 0.78 0.00
19_I 116_E 0.77 0.00
136_A 155_L 0.77 0.00
226_F 45_L 0.77 0.00
530_D 50_A 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0623 seconds.