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OPENSEQ.org

FRE - NTRC
UniProt: P0AEN1 - P0AFB8
Length: 702
Sequences: 410
Seq/Len: 0.60
I_Prob: 0.00

FRE - NAD(P)H-flavin reductase
Paralog alert: 0.73 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: FENR FRE
NTRC - Nitrogen regulation protein NR(I)
Paralog alert: 0.76 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: ATOC DHAR FHLA GLRR HYFR NORR NTRC PRPR PSPF RTCR TYRR YGEV ZRAR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
89_V 326_L 1.15 0.00
70_I 250_T 1.10 0.00
87_I 306_V 1.08 0.00
89_V 147_M 0.99 0.00
109_I 364_C 0.94 0.00
109_I 306_V 0.91 0.00
147_Y 332_E 0.88 0.00
39_V 326_L 0.88 0.00
32_R 232_D 0.88 0.00
46_K 263_R 0.88 0.00
134_I 147_M 0.87 0.00
81_I 276_I 0.86 0.00
173_A 195_L 0.86 0.00
136_I 455_G 0.85 0.00
69_E 140_I 0.83 0.00
109_I 318_I 0.83 0.00
17_T 306_V 0.82 0.00
41_M 180_A 0.82 0.00
134_I 463_L 0.81 0.00
200_I 169_E 0.81 0.00
7_K 357_V 0.80 0.00
214_F 212_H 0.80 0.00
111_G 165_L 0.80 0.00
186_V 200_I 0.79 0.00
142_E 341_H 0.79 0.00
100_D 166_I 0.78 0.00
208_K 298_F 0.78 0.00
169_E 195_L 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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