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OPENSEQ.org

FLIA - PRIM
UniProt: P0AEM6 - P0ABS5
Length: 820
Sequences: 798
Seq/Len: 1.00
I_Prob: 0.01

FLIA - RNA polymerase sigma factor for flagellar operon
Paralog alert: 0.76 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: FLIA RPOH RPOS
PRIM - DNA primase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PRIM
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
13_K 127_Y 1.48 0.01
171_Q 362_M 1.21 0.01
184_E 427_L 1.08 0.01
50_I 219_G 1.02 0.00
62_L 293_H 1.01 0.00
101_A 10_I 1.00 0.00
107_L 78_D 0.97 0.00
180_Q 271_V 0.97 0.00
212_A 21_D 0.95 0.00
107_L 26_R 0.95 0.00
16_L 337_F 0.95 0.00
154_G 343_G 0.94 0.00
108_E 252_Q 0.94 0.00
168_N 284_S 0.93 0.00
94_R 348_T 0.93 0.00
45_L 347_D 0.93 0.00
114_N 234_P 0.93 0.00
184_E 36_F 0.92 0.00
53_L 17_T 0.92 0.00
141_S 348_T 0.92 0.00
184_E 388_R 0.91 0.00
129_A 3_G 0.91 0.00
110_E 246_Y 0.90 0.00
57_E 9_F 0.90 0.00
40_E 294_I 0.90 0.00
115_A 79_K 0.89 0.00
57_E 372_L 0.88 0.00
154_G 344_E 0.88 0.00
40_E 60_H 0.88 0.00
125_G 30_K 0.88 0.00
17_W 408_R 0.87 0.00
50_I 264_V 0.86 0.00
166_R 293_H 0.85 0.00
118_T 210_D 0.85 0.00
171_Q 295_Q 0.85 0.00
154_G 310_G 0.85 0.00
108_E 268_M 0.85 0.00
129_A 217_G 0.85 0.00
121_A 211_K 0.84 0.00
113_R 343_G 0.84 0.00
16_L 333_R 0.83 0.00
180_Q 518_K 0.83 0.00
50_I 267_Y 0.82 0.00
212_A 395_A 0.82 0.00
212_A 177_E 0.82 0.00
146_Y 298_F 0.82 0.00
119_E 78_D 0.82 0.00
195_L 338_M 0.81 0.00
154_G 486_R 0.81 0.00
173_L 239_F 0.81 0.00
62_L 341_P 0.80 0.00
194_K 140_R 0.80 0.00
122_E 462_P 0.80 0.00
16_L 318_A 0.80 0.00
129_A 278_I 0.80 0.00
16_L 298_F 0.80 0.00
165_Q 292_D 0.80 0.00
164_H 124_N 0.80 0.00
122_E 288_S 0.80 0.00
154_G 530_I 0.80 0.00
121_A 290_T 0.79 0.00
172_Q 386_D 0.79 0.00
14_H 255_N 0.78 0.00
135_L 252_Q 0.78 0.00
134_M 343_G 0.78 0.00
87_D 246_Y 0.78 0.00
171_Q 423_D 0.78 0.00
53_L 310_G 0.78 0.00
173_L 307_C 0.78 0.00
171_Q 243_R 0.77 0.00
191_E 183_I 0.77 0.00
146_Y 175_N 0.77 0.00
118_T 36_F 0.77 0.00
215_E 161_A 0.77 0.00
65_T 252_Q 0.77 0.00
199_L 372_L 0.77 0.00
177_N 405_E 0.76 0.00
104_I 219_G 0.76 0.00
127_D 383_S 0.76 0.00
107_L 292_D 0.76 0.00
17_W 400_S 0.75 0.00
125_G 216_I 0.75 0.00
104_I 127_Y 0.75 0.00
184_E 243_R 0.75 0.00
233_R 52_V 0.74 0.00
129_A 247_G 0.74 0.00
101_A 24_D 0.74 0.00
138_T 386_D 0.74 0.00
17_W 179_R 0.74 0.00
40_E 18_D 0.74 0.00
142_Q 341_P 0.73 0.00
39_V 308_Y 0.73 0.00
25_R 67_H 0.73 0.00
127_D 72_D 0.73 0.00
103_A 176_P 0.73 0.00
154_G 39_C 0.73 0.00
195_L 291_A 0.73 0.00
94_R 344_E 0.73 0.00
191_E 278_I 0.73 0.00
123_R 420_G 0.73 0.00
101_A 383_S 0.72 0.00
57_E 58_F 0.72 0.00
212_A 246_Y 0.72 0.00
14_H 307_C 0.72 0.00
180_Q 565_N 0.72 0.00
153_H 175_N 0.72 0.00
166_R 399_I 0.72 0.00
65_T 66_A 0.72 0.00
96_N 347_D 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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