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OPENSEQ.org

MIAB - YBEY
UniProt: P0AEI1 - P0A898
Length: 629
Sequences: 500
Seq/Len: 0.84
I_Prob: 0.00

MIAB - (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
Paralog alert: 0.79 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: MIAB RIMO
YBEY - Endoribonuclease YbeY
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBEY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
357_E 132_E 1.40 0.00
289_I 88_I 1.31 0.00
79_G 45_V 1.25 0.00
153_I 141_M 1.14 0.00
114_M 112_V 1.12 0.00
268_S 119_L 1.08 0.00
115_I 47_D 1.07 0.00
77_I 31_V 1.06 0.00
162_T 82_L 1.04 0.00
142_P 88_I 1.03 0.00
244_F 24_F 1.02 0.00
137_D 89_C 1.00 0.00
126_V 52_H 0.99 0.00
293_L 21_E 0.97 0.00
420_G 83_L 0.97 0.00
85_A 115_G 0.97 0.00
179_D 41_V 0.96 0.00
247_D 41_V 0.96 0.00
115_I 58_Y 0.96 0.00
37_V 60_G 0.94 0.00
102_I 98_Q 0.93 0.00
196_V 6_L 0.92 0.00
315_T 99_E 0.90 0.00
135_K 137_E 0.90 0.00
334_Y 99_E 0.89 0.00
378_R 111_M 0.88 0.00
422_F 119_L 0.88 0.00
162_T 52_H 0.88 0.00
109_H 110_H 0.87 0.00
162_T 79_E 0.87 0.00
236_F 43_I 0.86 0.00
193_V 102_K 0.86 0.00
437_G 99_E 0.86 0.00
70_K 88_I 0.86 0.00
113_E 60_G 0.85 0.00
158_N 89_C 0.85 0.00
101_I 92_V 0.85 0.00
251_V 146_Y 0.84 0.00
205_A 115_G 0.84 0.00
228_I 138_T 0.84 0.00
176_R 54_L 0.84 0.00
105_P 148_D 0.84 0.00
295_A 111_M 0.83 0.00
105_P 100_Q 0.83 0.00
286_Y 27_W 0.83 0.00
163_Y 84_G 0.83 0.00
169_T 137_E 0.83 0.00
206_W 88_I 0.83 0.00
166_V 134_E 0.82 0.00
330_F 45_V 0.82 0.00
335_S 66_N 0.81 0.00
346_A 116_S 0.81 0.00
243_E 115_G 0.81 0.00
115_I 112_V 0.80 0.00
335_S 96_E 0.80 0.00
392_T 41_V 0.80 0.00
77_I 10_L 0.80 0.00
35_T 61_K 0.80 0.00
415_T 122_Y 0.80 0.00
105_P 110_H 0.80 0.00
278_G 91_Q 0.79 0.00
5_L 42_T 0.79 0.00
367_E 140_I 0.78 0.00
303_S 43_I 0.78 0.00
109_H 130_A 0.78 0.00
284_L 26_T 0.78 0.00
159_K 110_H 0.78 0.00
265_P 115_G 0.78 0.00
384_T 8_L 0.78 0.00
287_K 64_P 0.78 0.00
174_V 116_S 0.77 0.00
297_R 66_N 0.77 0.00
126_V 131_E 0.77 0.00
373_A 64_P 0.77 0.00
302_I 125_I 0.77 0.00
400_L 52_H 0.77 0.00
328_V 43_I 0.77 0.00
111_L 134_E 0.77 0.00
135_K 110_H 0.77 0.00
425_V 43_I 0.77 0.00
353_V 91_Q 0.76 0.00
434_S 69_S 0.76 0.00
77_I 24_F 0.76 0.00
184_E 68_L 0.76 0.00
325_I 33_P 0.76 0.00
153_I 53_S 0.76 0.00
169_T 110_H 0.76 0.00
84_V 66_N 0.76 0.00
419_I 62_D 0.76 0.00
330_F 109_A 0.76 0.00
439_V 47_D 0.76 0.00
80_V 137_E 0.76 0.00
243_E 48_T 0.76 0.00
213_G 41_V 0.75 0.00
227_A 75_P 0.75 0.00
44_L 111_M 0.75 0.00
437_G 100_Q 0.75 0.00
67_K 22_S 0.75 0.00
196_V 136_L 0.75 0.00
231_I 27_W 0.74 0.00
234_I 58_Y 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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