May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DEOR - PTFC2
UniProt: P0ACK5 - P32672
Length: 611
Sequences: 444
Seq/Len: 0.77
I_Prob: 0.00

DEOR - Deoxyribose operon repressor
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW
PTFC2 - Fructose-like permease IIC component 2
Paralog alert: 0.60 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: HRSA PTFBC PTFC1 PTFC2 PTFLB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
161_L 141_V 1.17 0.00
84_K 123_I 1.15 0.00
50_V 176_S 1.10 0.00
88_T 321_A 1.06 0.00
183_T 109_A 1.02 0.00
141_C 132_V 1.00 0.00
34_S 79_S 0.95 0.00
31_L 316_Y 0.94 0.00
102_T 331_V 0.93 0.00
107_I 154_L 0.93 0.00
38_I 109_A 0.91 0.00
229_V 228_L 0.91 0.00
97_F 331_V 0.89 0.00
47_A 39_L 0.88 0.00
230_V 133_M 0.87 0.00
29_A 242_S 0.87 0.00
102_T 141_V 0.86 0.00
248_I 107_L 0.86 0.00
138_A 251_A 0.86 0.00
152_F 165_L 0.86 0.00
200_A 74_A 0.86 0.00
47_A 321_A 0.85 0.00
146_H 23_I 0.85 0.00
103_T 269_A 0.85 0.00
35_E 36_S 0.84 0.00
232_D 255_M 0.84 0.00
197_M 55_K 0.84 0.00
98_F 81_A 0.83 0.00
157_F 196_V 0.83 0.00
165_C 182_V 0.82 0.00
101_G 259_G 0.82 0.00
83_A 112_I 0.82 0.00
156_D 101_A 0.82 0.00
149_N 259_G 0.81 0.00
15_E 35_V 0.81 0.00
197_M 124_P 0.80 0.00
160_T 168_W 0.80 0.00
49_V 172_M 0.80 0.00
227_D 23_I 0.80 0.00
248_I 236_I 0.80 0.00
154_P 80_I 0.80 0.00
98_F 145_I 0.80 0.00
90_V 43_G 0.80 0.00
118_T 146_T 0.79 0.00
83_A 77_G 0.79 0.00
119_A 238_R 0.79 0.00
123_S 235_L 0.79 0.00
153_K 219_A 0.79 0.00
171_Y 85_A 0.79 0.00
96_L 222_G 0.78 0.00
46_S 221_V 0.78 0.00
38_I 320_V 0.78 0.00
139_F 27_V 0.78 0.00
123_S 324_A 0.78 0.00
83_A 296_Q 0.78 0.00
117_F 230_M 0.78 0.00
127_F 21_H 0.77 0.00
102_T 71_F 0.77 0.00
120_V 39_L 0.77 0.00
167_D 168_W 0.77 0.00
140_L 47_D 0.77 0.00
182_A 210_Q 0.77 0.00
127_F 86_L 0.77 0.00
101_G 287_A 0.76 0.00
166_P 23_I 0.76 0.00
196_A 17_T 0.76 0.00
204_V 255_M 0.76 0.00
102_T 163_N 0.76 0.00
36_M 136_F 0.76 0.00
166_P 230_M 0.76 0.00
200_A 288_V 0.76 0.00
66_Y 104_F 0.76 0.00
174_A 259_G 0.75 0.00
174_A 223_I 0.75 0.00
6_E 17_T 0.75 0.00
213_G 108_I 0.75 0.00
44_N 68_M 0.75 0.00
173_A 135_I 0.75 0.00
111_I 27_V 0.74 0.00
174_A 37_V 0.74 0.00
109_E 67_L 0.73 0.00
51_L 135_I 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0311 seconds.