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OPENSEQ.org

DEOR - POTF
UniProt: P0ACK5 - P31133
Length: 622
Sequences: 522
Seq/Len: 0.89
I_Prob: 0.00

DEOR - Deoxyribose operon repressor
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW
POTF - Putrescine-binding periplasmic protein
Paralog alert: 0.78 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: CYSP MALE MODA POTD POTF SUBI THIB UGPB YCJN YDCS YNJB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
67_L 303_D 1.17 0.00
51_L 57_V 1.07 0.00
81_R 51_K 0.95 0.00
138_A 57_V 0.93 0.00
32_G 272_G 0.89 0.00
88_T 204_D 0.87 0.00
230_V 145_D 0.86 0.00
213_G 140_I 0.85 0.00
6_E 147_V 0.83 0.00
107_I 144_V 0.83 0.00
232_D 269_P 0.82 0.00
26_D 302_P 0.82 0.00
32_G 306_A 0.81 0.00
182_A 60_D 0.81 0.00
117_F 104_S 0.80 0.00
102_T 234_A 0.80 0.00
226_F 205_D 0.79 0.00
176_V 72_L 0.79 0.00
90_V 58_V 0.79 0.00
200_A 284_A 0.76 0.00
32_G 178_S 0.76 0.00
175_G 165_K 0.75 0.00
207_V 52_E 0.75 0.00
90_V 170_E 0.75 0.00
71_Q 143_N 0.75 0.00
237_D 238_I 0.75 0.00
220_M 248_V 0.75 0.00
200_A 51_K 0.75 0.00
98_F 163_I 0.74 0.00
248_I 161_D 0.73 0.00
34_S 255_A 0.73 0.00
92_P 263_N 0.73 0.00
175_G 45_T 0.73 0.00
83_A 284_A 0.73 0.00
92_P 94_T 0.73 0.00
83_A 148_K 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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