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OPENSEQ.org

AGAR - TDCB
UniProt: P0ACK2 - P0AGF6
Length: 598
Sequences: 352
Seq/Len: 0.62
I_Prob: 0.00

AGAR - Putative aga operon transcriptional repressor
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW
TDCB - L-threonine dehydratase catabolic TdcB
Paralog alert: 0.92 [within 20: 0.19] - ratio of genomes with paralogs
Cluster includes: CYSK CYSM DPAL SDHD TDCB TRPB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
104_I 94_C 1.08 0.00
134_M 32_R 1.03 0.00
235_I 49_E 0.99 0.00
141_A 98_G 0.99 0.00
243_I 279_V 0.97 0.00
110_V 78_V 0.95 0.00
243_I 264_D 0.92 0.00
189_A 292_L 0.91 0.00
186_G 279_V 0.91 0.00
97_A 288_A 0.87 0.00
214_A 79_V 0.82 0.00
104_I 44_I 0.82 0.00
112_L 223_G 0.80 0.00
61_A 224_E 0.79 0.00
191_D 133_D 0.78 0.00
239_R 179_V 0.77 0.00
133_A 143_E 0.77 0.00
138_M 124_V 0.77 0.00
214_A 180_I 0.77 0.00
24_Q 79_V 0.76 0.00
104_I 289_C 0.76 0.00
119_F 124_V 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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