May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LRP - POXB
UniProt: P0ACJ0 - P07003
Length: 736
Sequences: 412
Seq/Len: 0.60
I_Prob: 0.00

LRP - Leucine-responsive regulatory protein
Paralog alert: 0.82 [within 20: 0.12] - ratio of genomes with paralogs
Cluster includes: ASNC LRP YBAO
POXB - Pyruvate dehydrogenase [ubiquinone]
Paralog alert: 0.81 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: GCL ILVB ILVG ILVI MEND OXC POXB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
116_L 525_V 1.17 0.00
77_F 18_V 1.14 0.00
27_G 85_L 1.03 0.00
35_S 362_L 1.01 0.00
49_V 506_E 0.99 0.00
57_F 43_E 0.97 0.00
19_I 325_E 0.95 0.00
39_G 415_A 0.94 0.00
77_F 308_L 0.94 0.00
65_L 428_V 0.94 0.00
36_K 456_V 0.88 0.00
25_K 10_A 0.87 0.00
99_K 523_V 0.87 0.00
33_E 202_S 0.86 0.00
32_V 344_K 0.85 0.00
161_I 200_Y 0.84 0.00
38_V 431_C 0.84 0.00
76_V 150_L 0.82 0.00
161_I 430_M 0.82 0.00
26_D 453_V 0.82 0.00
66_N 9_I 0.82 0.00
103_I 516_S 0.80 0.00
137_R 509_E 0.80 0.00
150_M 370_A 0.80 0.00
30_S 488_A 0.80 0.00
150_M 228_A 0.79 0.00
57_F 505_S 0.79 0.00
14_R 461_S 0.79 0.00
97_V 301_H 0.78 0.00
98_Q 457_V 0.78 0.00
64_L 270_V 0.78 0.00
58_I 221_E 0.77 0.00
36_K 248_V 0.77 0.00
66_N 338_D 0.76 0.00
34_L 231_V 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0187 seconds.