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OPENSEQ.org

MARA - YGHB
UniProt: P0ACH5 - P0AA60
Length: 346
Sequences: 274
Seq/Len: 0.84
I_Prob: 0.00

MARA - Multiple antibiotic resistance protein MarA
Paralog alert: 0.87 [within 20: 0.43] - ratio of genomes with paralogs
Cluster includes: ADIY APPY ARAC CHBR ENVY EUTR FEAR GADW GADX MARA MELR RHAR RHAS SOXS YBCM YDEO YDIP YEAM YIDL YIJO YKGD YPDC YQHC
YGHB - Inner membrane protein YghB
Paralog alert: 0.49 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: DEDA YABI YGHB YOHD YQJA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
92_L 120_R 1.14 0.00
53_S 132_L 1.04 0.00
42_L 119_D 0.90 0.00
80_L 155_F 0.89 0.00
51_G 7_I 0.88 0.00
97_K 191_F 0.88 0.00
80_L 171_F 0.87 0.00
25_P 81_L 0.86 0.00
94_R 19_L 0.84 0.00
67_A 113_R 0.82 0.00
97_K 175_L 0.81 0.00
80_L 150_N 0.80 0.00
12_H 120_R 0.80 0.00
17_W 114_A 0.80 0.00
109_M 61_I 0.79 0.00
40_W 91_R 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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