May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PRMC - RF1
UniProt: P0ACC1 - P0A7I0
Length: 637
Sequences: 1089
Seq/Len: 1.72
I_Prob: 0.01

PRMC - Release factor glutamine methyltransferase
Paralog alert: 0.37 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PRMB PRMC TRMN6
RF1 - Peptide chain release factor 1
Paralog alert: 0.82 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RF1 RF2
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2b3tB:AContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
224_S 219_P 1.17 0.01
94_D 315_G 0.88 0.00
139_V 101_L 0.85 0.00
72_T 65_A 0.85 0.00
267_N 239_T 0.84 0.00
70_H 115_V 0.81 0.00
69_A 264_H 0.80 0.00
239_G 324_L 0.78 0.00
275_Y 87_E 0.77 0.00
117_G 236_H 0.77 0.00
242_Q 349_Q 0.76 0.00
265_G 105_P 0.76 0.00
264_Y 326_L 0.74 0.00
71_L 220_A 0.73 0.00
123_I 327_Y 0.73 0.00
40_L 159_Y 0.73 0.00
199_V 261_R 0.72 0.00
69_A 244_I 0.72 0.00
82_L 85_A 0.72 0.00
126_A 18_E 0.72 0.00
94_D 153_E 0.72 0.00
50_E 276_A 0.71 0.00
33_G 162_I 0.70 0.00
234_L 219_P 0.69 0.00
39_I 8_K 0.69 0.00
246_V 315_G 0.69 0.00
88_T 74_M 0.69 0.00
154_Q 115_V 0.69 0.00
187_I 253_I 0.69 0.00
72_T 276_A 0.68 0.00
270_V 224_I 0.68 0.00
167_D 340_L 0.68 0.00
32_T 298_L 0.67 0.00
116_L 230_S 0.67 0.00
167_D 145_R 0.67 0.00
140_D 168_G 0.66 0.00
62_R 118_G 0.65 0.00
117_G 267_K 0.65 0.00
31_V 84_E 0.65 0.00
89_L 168_G 0.65 0.00
97_C 117_A 0.65 0.00
94_D 236_H 0.64 0.00
138_A 66_Q 0.64 0.00
49_D 73_E 0.64 0.00
236_L 76_E 0.64 0.00
226_N 113_L 0.64 0.00
142_M 307_N 0.64 0.00
238_H 193_Q 0.64 0.00
120_T 145_R 0.64 0.00
90_I 258_Q 0.63 0.00
25_E 229_S 0.63 0.00
138_A 220_A 0.63 0.00
157_A 83_R 0.63 0.00
217_I 193_Q 0.63 0.00
254_G 315_G 0.63 0.00
270_V 273_V 0.62 0.00
72_T 67_M 0.62 0.00
214_M 166_I 0.62 0.00
252_L 63_E 0.62 0.00
72_T 287_Q 0.62 0.00
165_Q 172_Y 0.61 0.00
89_L 301_G 0.61 0.00
225_R 41_E 0.61 0.00
267_N 192_S 0.61 0.00
250_F 330_D 0.61 0.00
209_A 156_H 0.61 0.00
227_A 352_Q 0.61 0.00
25_E 280_A 0.61 0.00
22_R 229_S 0.61 0.00
138_A 211_D 0.61 0.00
45_T 265_K 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0783 seconds.