May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

KDSC - MLAF
UniProt: P0ABZ4 - P63386
Length: 457
Sequences: 522
Seq/Len: 1.23
I_Prob: 0.00

KDSC - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: KDSC
MLAF - Probable phospholipid import ATP-binding protein MlaF
Paralog alert: 0.94 [within 20: 0.84] - ratio of genomes with paralogs
Cluster includes: ARTP BTUD CCMA CYSA DDPD DDPF DPPD DPPF FBPC FECE FEPC FHUC FTSE GLNQ GLTL HISP LIVF LIVG LOLD LPTB MALK METN MLAF MODC NIKD NIKE OPPD OPPF PHNC PHNK PHNL POTA POTG PROV PSTB SAPD SAPF SSUB SUFC TAUB THIQ UGPC YADG YBBA YBBL YCJV YDCT YECC YEHX YHDZ YNJD ZNUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
138_L 72_I 1.01 0.00
27_R 39_I 0.92 0.00
168_E 213_D 0.85 0.00
171_D 88_S 0.83 0.00
142_V 220_D 0.81 0.00
63_R 101_N 0.81 0.00
77_G 223_I 0.80 0.00
96_Y 69_G 0.79 0.00
44_M 153_A 0.78 0.00
136_V 187_I 0.78 0.00
155_Y 11_M 0.76 0.00
120_V 67_F 0.74 0.00
145_A 188_S 0.72 0.00
62_I 195_G 0.72 0.00
174_L 229_A 0.72 0.00
100_S 65_I 0.72 0.00
30_I 88_S 0.71 0.00
136_V 117_P 0.71 0.00
44_M 144_E 0.70 0.00
82_L 129_L 0.70 0.00
64_C 162_E 0.70 0.00
91_G 198_C 0.70 0.00
83_V 129_L 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0933 seconds.