May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

CYOA - CYOD
UniProt: P0ABJ1 - P0ABJ6
Length: 424
Sequences: 286
Seq/Len: 0.71
I_Prob: 0.00

CYOA - Ubiquinol oxidase subunit 2
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CYOA
CYOD - Cytochrome o ubiquinol oxidase protein CyoD
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CYOD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
175_F 77_N 1.42 0.00
216_S 90_I 1.31 0.00
21_L 50_I 1.24 0.00
144_E 45_V 1.24 0.00
31_D 54_A 1.20 0.00
50_L 31_I 1.16 0.00
22_L 50_I 1.15 0.00
161_V 85_V 1.15 0.00
129_I 87_I 1.13 0.00
82_W 18_Y 1.12 0.00
170_V 61_H 1.09 0.00
54_V 85_V 1.07 0.00
191_T 101_N 1.07 0.00
123_D 23_I 1.04 0.00
18_G 20_T 1.04 0.00
39_E 49_T 1.04 0.00
229_A 52_A 1.03 0.00
169_S 91_L 1.02 0.00
203_Y 68_M 1.01 0.00
265_Y 69_N 1.00 0.00
191_T 66_L 1.00 0.00
117_S 106_M 1.00 0.00
154_A 96_I 0.99 0.00
198_N 61_H 0.99 0.00
173_S 102_L 0.99 0.00
120_L 22_F 0.99 0.00
62_A 18_Y 0.98 0.00
182_Q 102_L 0.98 0.00
274_F 58_V 0.97 0.00
207_S 105_N 0.96 0.00
39_E 86_L 0.96 0.00
236_A 58_V 0.95 0.00
15_L 19_M 0.95 0.00
281_F 75_G 0.94 0.00
213_P 89_A 0.94 0.00
227_D 27_I 0.94 0.00
23_S 4_S 0.94 0.00
36_I 27_I 0.94 0.00
253_K 63_V 0.93 0.00
37_G 81_F 0.93 0.00
144_E 54_A 0.93 0.00
29_L 77_N 0.93 0.00
170_V 102_L 0.92 0.00
129_I 23_I 0.92 0.00
133_S 102_L 0.91 0.00
198_N 64_C 0.91 0.00
23_S 9_G 0.90 0.00
87_K 14_S 0.90 0.00
225_T 25_S 0.89 0.00
44_I 25_S 0.89 0.00
208_A 80_A 0.89 0.00
198_N 90_I 0.88 0.00
42_S 15_V 0.88 0.00
132_V 33_F 0.88 0.00
118_K 35_M 0.88 0.00
207_S 107_M 0.87 0.00
67_W 24_L 0.87 0.00
60_L 48_G 0.87 0.00
135_D 76_W 0.87 0.00
281_F 2_S 0.86 0.00
235_V 58_V 0.86 0.00
182_Q 16_K 0.86 0.00
59_I 18_Y 0.86 0.00
239_K 36_V 0.86 0.00
76_A 80_A 0.85 0.00
62_A 17_T 0.85 0.00
58_A 17_T 0.85 0.00
277_V 14_S 0.85 0.00
149_T 20_T 0.84 0.00
84_H 37_M 0.84 0.00
183_I 93_V 0.84 0.00
278_I 79_T 0.84 0.00
105_V 81_F 0.84 0.00
230_A 17_T 0.83 0.00
259_E 61_H 0.83 0.00
230_A 100_W 0.83 0.00
62_A 80_A 0.83 0.00
58_A 100_W 0.83 0.00
107_T 25_S 0.83 0.00
195_L 62_L 0.83 0.00
222_A 32_P 0.82 0.00
68_K 14_S 0.82 0.00
25_C 26_I 0.82 0.00
43_L 69_N 0.82 0.00
263_V 90_I 0.82 0.00
216_S 68_M 0.81 0.00
59_I 26_I 0.81 0.00
86_N 12_H 0.81 0.00
199_E 62_L 0.81 0.00
159_T 84_T 0.80 0.00
47_A 58_V 0.80 0.00
194_H 33_F 0.80 0.00
128_T 49_T 0.80 0.00
76_A 99_M 0.80 0.00
67_W 59_L 0.80 0.00
73_N 90_I 0.80 0.00
24_G 23_I 0.80 0.00
52_L 26_I 0.80 0.00
207_S 51_L 0.80 0.00
239_K 52_A 0.79 0.00
62_A 46_I 0.79 0.00
236_A 50_I 0.79 0.00
47_A 85_V 0.79 0.00
266_F 58_V 0.79 0.00
266_F 23_I 0.79 0.00
181_S 15_V 0.79 0.00
168_N 92_V 0.79 0.00
184_Y 106_M 0.79 0.00
21_L 17_T 0.79 0.00
180_G 62_L 0.78 0.00
100_I 12_H 0.78 0.00
54_V 93_V 0.78 0.00
167_S 96_I 0.78 0.00
191_T 61_H 0.78 0.00
236_A 36_V 0.78 0.00
36_I 19_M 0.78 0.00
130_E 61_H 0.77 0.00
92_V 61_H 0.77 0.00
192_R 17_T 0.77 0.00
82_W 36_V 0.77 0.00
123_D 42_S 0.77 0.00
254_L 95_S 0.77 0.00
154_A 61_H 0.76 0.00
260_Y 86_L 0.76 0.00
255_A 89_A 0.76 0.00
185_A 99_M 0.76 0.00
50_L 95_S 0.76 0.00
241_S 45_V 0.76 0.00
147_I 64_C 0.76 0.00
242_P 52_A 0.76 0.00
76_A 24_L 0.76 0.00
109_K 47_L 0.76 0.00
149_T 51_L 0.76 0.00
259_E 30_V 0.76 0.00
77_K 56_V 0.75 0.00
196_I 71_K 0.75 0.00
107_T 54_A 0.75 0.00
206_I 17_T 0.75 0.00
135_D 80_A 0.75 0.00
181_S 68_M 0.75 0.00
22_L 37_M 0.75 0.00
29_L 98_I 0.75 0.00
13_L 10_A 0.74 0.00
122_H 53_M 0.74 0.00
135_D 61_H 0.74 0.00
190_Q 98_I 0.74 0.00
256_A 30_V 0.74 0.00
68_K 49_T 0.74 0.00
251_F 108_M 0.74 0.00
110_T 74_E 0.74 0.00
207_S 63_V 0.73 0.00
152_E 100_W 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1831 seconds.