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OPENSEQ.org

RHTA - YBHG
UniProt: P0AA67 - P75777
Length: 627
Sequences: 731
Seq/Len: 1.22
I_Prob: 0.00

RHTA - Inner membrane transporter RhtA
Paralog alert: 0.84 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: EAMA RHTA YDDG YEDA YHBE YICL YIJE YTFF
YBHG - UPF0194 membrane protein YbhG
Paralog alert: 0.80 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: AAEA ACRA ACRE EMRA EMRK MACA MDTA MDTE MDTN YBHG YDHJ YHII YIAV YIBH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
272_I 47_L 1.08 0.00
134_F 209_A 1.01 0.00
38_V 195_L 0.88 0.00
158_A 55_V 0.84 0.00
129_V 235_V 0.83 0.00
134_F 206_T 0.83 0.00
134_F 277_I 0.83 0.00
121_D 277_I 0.82 0.00
258_G 269_P 0.82 0.00
259_E 55_V 0.82 0.00
270_G 162_L 0.82 0.00
41_P 226_L 0.81 0.00
271_A 194_Q 0.81 0.00
235_T 121_Q 0.79 0.00
120_V 55_V 0.79 0.00
272_I 228_E 0.78 0.00
113_L 75_L 0.77 0.00
86_Y 280_V 0.76 0.00
91_S 88_K 0.74 0.00
212_L 161_T 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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