May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RSUA - YEJB
UniProt: P0AA43 - P0AFU0
Length: 595
Sequences: 335
Seq/Len: 0.60
I_Prob: 0.00

RSUA - Ribosomal small subunit pseudouridine synthase A
Paralog alert: 0.95 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC
YEJB - Inner membrane ABC transporter permease protein YejB
Paralog alert: 0.79 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: DDPB DDPC DPPB DPPC GSIC GSID NIKB NIKC OPPB OPPC SAPB SAPC YEJB YEJE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
41_L 6_I 1.06 0.00
134_V 201_L 1.05 0.00
3_L 150_V 1.04 0.00
54_L 151_S 1.00 0.00
30_D 173_F 0.99 0.00
63_F 146_I 0.99 0.00
54_L 83_P 0.96 0.00
27_V 176_I 0.92 0.00
54_L 322_T 0.90 0.00
64_M 332_G 0.88 0.00
121_I 9_L 0.88 0.00
63_F 139_L 0.88 0.00
161_T 110_Y 0.87 0.00
140_V 146_I 0.85 0.00
27_V 294_F 0.84 0.00
198_V 199_F 0.84 0.00
54_L 354_L 0.80 0.00
106_T 145_L 0.79 0.00
53_P 280_R 0.79 0.00
18_A 191_V 0.78 0.00
98_A 234_A 0.78 0.00
128_C 253_D 0.78 0.00
47_V 112_R 0.77 0.00
126_H 111_I 0.77 0.00
192_A 7_R 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.064 seconds.