May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

FUCO - FUCR
UniProt: P0A9S1 - P0ACK8
Length: 625
Sequences: 410
Seq/Len: 0.67
I_Prob: 0.00

FUCO - Lactaldehyde reductase
Paralog alert: 0.77 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: ADH2 AROB EUTG FUCO GLDA YBDH YQHD
FUCR - L-fucose operon activator
Paralog alert: 0.83 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: AGAR DEOR FUCR GATR GLPR SGCR SRLR ULAR YCIT YDJF YGBI YIHW
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
137_I 176_I 1.17 0.00
344_V 41_E 1.07 0.00
25_V 139_I 0.98 0.00
341_D 84_A 0.98 0.00
137_I 135_R 0.97 0.00
26_K 200_A 0.90 0.00
186_P 97_I 0.90 0.00
58_G 232_D 0.87 0.00
65_D 145_L 0.87 0.00
285_P 229_I 0.85 0.00
192_T 100_D 0.84 0.00
234_G 171_F 0.84 0.00
92_I 83_I 0.82 0.00
137_I 163_S 0.82 0.00
282_I 190_A 0.81 0.00
376_E 194_S 0.81 0.00
268_L 103_S 0.81 0.00
349_I 138_L 0.79 0.00
58_G 229_I 0.79 0.00
159_R 97_I 0.78 0.00
350_P 28_L 0.77 0.00
61_W 102_S 0.77 0.00
300_R 31_S 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0633 seconds.