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OPENSEQ.org

SYN - YCBL
UniProt: P0A8M0 - P75849
Length: 681
Sequences: 435
Seq/Len: 0.67
I_Prob: 0.00

SYN - Asparagine--tRNA ligase
Paralog alert: 0.91 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: EPMA SYD SYK1 SYK2 SYN
YCBL - Uncharacterized protein YcbL
Paralog alert: 0.71 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: GLO2 YCBL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
258_N 158_V 1.22 0.00
215_N 171_L 1.18 0.00
119_E 74_V 1.18 0.00
221_C 167_D 1.17 0.00
227_Y 3_Y 1.09 0.00
144_L 189_I 1.06 0.00
327_F 167_D 1.05 0.00
90_F 198_L 1.03 0.00
152_F 65_A 1.02 0.00
297_V 29_V 1.01 0.00
94_A 125_Q 1.01 0.00
148_L 28_L 0.99 0.00
225_K 175_I 0.97 0.00
119_E 1_M 0.96 0.00
402_V 202_R 0.93 0.00
227_Y 29_V 0.92 0.00
92_I 167_D 0.92 0.00
273_V 94_S 0.91 0.00
270_L 94_S 0.89 0.00
230_G 133_T 0.89 0.00
74_V 68_L 0.88 0.00
127_L 181_P 0.88 0.00
445_V 25_L 0.87 0.00
74_V 76_V 0.87 0.00
443_A 133_T 0.86 0.00
57_S 111_L 0.86 0.00
409_E 127_L 0.86 0.00
432_S 163_F 0.86 0.00
371_N 92_A 0.85 0.00
277_V 62_V 0.85 0.00
428_T 13_Q 0.84 0.00
450_N 121_N 0.83 0.00
82_A 202_R 0.83 0.00
277_V 98_G 0.83 0.00
82_A 176_K 0.83 0.00
368_M 92_A 0.82 0.00
74_V 26_A 0.82 0.00
285_M 173_S 0.82 0.00
136_A 53_L 0.82 0.00
142_H 120_G 0.82 0.00
434_F 139_F 0.82 0.00
307_D 204_H 0.81 0.00
320_L 28_L 0.81 0.00
144_L 18_I 0.81 0.00
426_Y 126_V 0.81 0.00
135_G 26_A 0.81 0.00
73_S 93_Q 0.81 0.00
158_F 6_I 0.80 0.00
285_M 18_I 0.80 0.00
332_Y 18_I 0.80 0.00
221_C 71_H 0.80 0.00
94_A 18_I 0.79 0.00
275_K 3_Y 0.79 0.00
94_A 28_L 0.79 0.00
318_T 42_V 0.79 0.00
61_Y 69_A 0.79 0.00
158_F 77_F 0.78 0.00
443_A 152_V 0.78 0.00
447_G 156_G 0.77 0.00
408_L 169_N 0.77 0.00
438_F 182_L 0.77 0.00
450_N 196_S 0.77 0.00
99_V 99_L 0.77 0.00
260_N 189_I 0.76 0.00
445_V 142_D 0.76 0.00
99_V 37_K 0.76 0.00
84_P 194_P 0.76 0.00
297_V 125_Q 0.76 0.00
402_V 167_D 0.76 0.00
231_P 35_A 0.76 0.00
74_V 180_L 0.75 0.00
344_Y 46_G 0.75 0.00
41_V 18_I 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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