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OPENSEQ.org

TOLB - YBGC
UniProt: P0A855 - P0A8Z3
Length: 564
Sequences: 338
Seq/Len: 0.62
I_Prob: 0.01

TOLB - Protein TolB
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TOLB
YBGC - Acyl-CoA thioester hydrolase YbgC
Paralog alert: 0.65 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: FADM YBGC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
271_Y 90_L 1.62 0.01
383_A 101_N 1.59 0.01
270_L 114_V 1.41 0.00
193_F 112_V 1.37 0.00
275_L 87_G 1.31 0.00
58_V 55_V 1.31 0.00
353_G 96_I 1.29 0.00
252_S 121_P 1.22 0.00
288_S 90_L 1.22 0.00
198_S 47_Q 1.20 0.00
226_L 27_S 1.20 0.00
391_Y 35_A 1.19 0.00
312_P 92_F 1.19 0.00
361_Q 120_K 1.18 0.00
248_A 35_A 1.16 0.00
64_N 66_Y 1.14 0.00
57_I 60_R 1.14 0.00
427_S 59_V 1.13 0.00
239_V 111_V 1.13 0.00
372_S 116_P 1.13 0.00
269_N 27_S 1.13 0.00
309_A 89_S 1.09 0.00
396_G 56_A 1.08 0.00
372_S 120_K 1.08 0.00
244_R 39_M 1.07 0.00
358_I 62_M 1.07 0.00
81_G 52_A 1.06 0.00
145_G 52_A 1.06 0.00
418_D 82_I 1.04 0.00
292_E 40_L 1.03 0.00
309_A 75_M 1.03 0.00
81_G 63_T 1.03 0.00
300_Q 58_V 1.02 0.00
229_Q 38_E 1.02 0.00
397_M 71_R 1.02 0.00
383_A 127_S 1.02 0.00
396_G 26_A 1.02 0.00
152_V 104_L 1.01 0.00
327_I 114_V 1.00 0.00
238_Q 25_H 1.00 0.00
65_S 39_M 0.99 0.00
415_P 112_V 0.99 0.00
273_M 109_V 0.99 0.00
57_I 24_Y 0.97 0.00
148_A 50_L 0.97 0.00
365_T 6_F 0.97 0.00
138_K 55_V 0.97 0.00
209_P 125_P 0.97 0.00
184_V 45_F 0.96 0.00
386_G 40_L 0.96 0.00
267_S 74_D 0.96 0.00
170_V 71_R 0.96 0.00
398_G 26_A 0.95 0.00
144_A 66_Y 0.95 0.00
218_T 29_V 0.94 0.00
120_D 107_A 0.94 0.00
265_T 25_H 0.94 0.00
192_Q 72_L 0.93 0.00
271_Y 37_T 0.93 0.00
309_A 46_S 0.93 0.00
427_S 55_V 0.93 0.00
168_A 31_F 0.93 0.00
224_S 22_V 0.93 0.00
247_G 119_M 0.92 0.00
302_L 35_A 0.92 0.00
383_A 81_E 0.92 0.00
130_A 25_H 0.91 0.00
227_V 111_V 0.91 0.00
152_V 65_E 0.91 0.00
228_I 22_V 0.91 0.00
55_G 29_V 0.91 0.00
346_M 123_A 0.90 0.00
224_S 43_H 0.90 0.00
261_A 24_Y 0.90 0.00
84_Q 85_M 0.89 0.00
376_L 57_F 0.89 0.00
170_V 100_E 0.89 0.00
226_L 105_N 0.89 0.00
152_V 116_P 0.89 0.00
259_A 31_F 0.88 0.00
271_Y 111_V 0.88 0.00
327_I 78_I 0.88 0.00
271_Y 103_L 0.88 0.00
273_M 122_R 0.88 0.00
204_S 40_L 0.88 0.00
223_R 66_Y 0.88 0.00
57_I 64_V 0.88 0.00
222_G 60_R 0.88 0.00
145_G 132_F 0.87 0.00
85_E 46_S 0.87 0.00
359_A 87_G 0.86 0.00
169_Y 25_H 0.86 0.00
127_T 100_E 0.86 0.00
112_Y 92_F 0.86 0.00
337_A 105_N 0.86 0.00
337_A 128_I 0.85 0.00
129_L 127_S 0.85 0.00
179_P 113_C 0.85 0.00
27_I 131_E 0.85 0.00
224_S 58_V 0.85 0.00
409_R 105_N 0.84 0.00
88_P 25_H 0.84 0.00
313_Q 125_P 0.84 0.00
251_F 86_R 0.84 0.00
372_S 115_D 0.84 0.00
181_E 37_T 0.84 0.00
350_S 32_Y 0.84 0.00
101_V 45_F 0.84 0.00
295_W 131_E 0.84 0.00
196_H 30_A 0.84 0.00
281_R 128_I 0.84 0.00
57_I 61_K 0.83 0.00
420_Q 72_L 0.83 0.00
374_T 107_A 0.83 0.00
302_L 68_A 0.83 0.00
41_P 9_P 0.82 0.00
114_V 8_W 0.82 0.00
149_S 90_L 0.82 0.00
267_S 32_Y 0.82 0.00
88_P 109_V 0.82 0.00
17_S 106_E 0.82 0.00
277_S 114_V 0.82 0.00
340_S 98_N 0.82 0.00
283_V 68_A 0.82 0.00
360_K 78_I 0.82 0.00
165_T 8_W 0.82 0.00
144_A 27_S 0.81 0.00
277_S 71_R 0.81 0.00
145_G 42_H 0.81 0.00
159_I 58_V 0.81 0.00
98_A 80_T 0.81 0.00
407_D 20_G 0.81 0.00
242_F 8_W 0.81 0.00
62_L 71_R 0.81 0.00
169_Y 72_L 0.81 0.00
261_A 114_V 0.81 0.00
389_V 68_A 0.81 0.00
425_A 107_A 0.81 0.00
365_T 11_R 0.80 0.00
374_T 89_S 0.80 0.00
133_S 87_G 0.80 0.00
320_N 22_V 0.80 0.00
375_F 79_Q 0.80 0.00
33_S 89_S 0.80 0.00
52_E 114_V 0.79 0.00
50_A 84_S 0.79 0.00
73_R 58_V 0.79 0.00
218_T 35_A 0.79 0.00
425_A 75_M 0.79 0.00
295_W 78_I 0.79 0.00
231_L 37_T 0.79 0.00
28_D 58_V 0.79 0.00
318_N 38_E 0.79 0.00
230_T 46_S 0.79 0.00
246_N 19_A 0.79 0.00
197_R 31_F 0.79 0.00
325_Q 69_P 0.78 0.00
361_Q 78_I 0.78 0.00
265_T 30_A 0.78 0.00
259_A 57_F 0.78 0.00
321_G 71_R 0.78 0.00
389_V 26_A 0.78 0.00
245_H 73_D 0.78 0.00
421_V 38_E 0.78 0.00
382_L 89_S 0.78 0.00
389_V 93_T 0.78 0.00
273_M 84_S 0.78 0.00
65_S 128_I 0.78 0.00
226_L 109_V 0.78 0.00
72_D 105_N 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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