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OPENSEQ.org

PYRH - UPPS
UniProt: P0A7E9 - P60472
Length: 494
Sequences: 807
Seq/Len: 1.73
I_Prob: 0.00

PYRH - Uridylate kinase
Paralog alert: 0.90 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: PYRH
UPPS - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UPPS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
142_F 68_Y 1.06 0.00
106_S 195_T 0.96 0.00
203_A 53_A 0.92 0.00
153_G 183_M 0.89 0.00
191_E 62_I 0.89 0.00
12_I 189_V 0.85 0.00
213_L 240_E 0.85 0.00
42_K 76_N 0.82 0.00
114_C 72_S 0.81 0.00
170_V 147_G 0.80 0.00
30_D 36_G 0.80 0.00
229_V 143_A 0.80 0.00
55_I 246_T 0.79 0.00
236_G 217_T 0.79 0.00
135_S 131_T 0.79 0.00
75_V 113_T 0.79 0.00
180_T 114_S 0.78 0.00
113_V 236_F 0.78 0.00
158_A 69_A 0.77 0.00
93_D 78_P 0.77 0.00
24_T 129_A 0.76 0.00
216_R 150_D 0.76 0.00
69_A 89_F 0.76 0.00
26_G 105_V 0.75 0.00
42_K 156_R 0.75 0.00
188_T 34_K 0.75 0.00
126_L 113_T 0.75 0.00
215_I 48_K 0.74 0.00
142_F 116_F 0.74 0.00
215_I 80_Q 0.74 0.00
121_E 36_G 0.74 0.00
65_G 243_F 0.73 0.00
142_F 141_I 0.72 0.00
182_T 238_N 0.71 0.00
51_V 96_E 0.70 0.00
159_D 212_A 0.70 0.00
239_I 164_Q 0.69 0.00
33_I 122_E 0.69 0.00
186_Q 33_K 0.69 0.00
44_L 245_G 0.69 0.00
156_I 64_A 0.68 0.00
99_Y 35_Q 0.68 0.00
134_L 146_G 0.68 0.00
238_L 34_K 0.68 0.00
112_G 89_F 0.68 0.00
129_N 80_Q 0.68 0.00
106_S 54_V 0.67 0.00
206_T 29_G 0.67 0.00
238_L 147_G 0.67 0.00
159_D 34_K 0.67 0.00
44_L 149_W 0.66 0.00
51_V 128_E 0.66 0.00
164_A 217_T 0.65 0.00
225_A 128_E 0.65 0.00
186_Q 118_S 0.65 0.00
88_G 223_D 0.65 0.00
49_I 209_I 0.64 0.00
22_Q 86_M 0.64 0.00
188_T 124_I 0.64 0.00
43_E 97_V 0.64 0.00
178_D 35_Q 0.64 0.00
216_R 220_L 0.64 0.00
222_K 48_K 0.64 0.00
147_S 188_P 0.64 0.00
223_P 175_E 0.64 0.00
60_L 134_N 0.64 0.00
162_L 229_F 0.63 0.00
236_G 147_G 0.63 0.00
219_N 144_N 0.63 0.00
16_L 217_T 0.63 0.00
215_I 192_V 0.63 0.00
136_A 96_E 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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