May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

EFG - RS12
UniProt: P0A6M8 - P0A7S3
Length: 828
Sequences: 783
Seq/Len: 0.96
I_Prob: 0.00

EFG - Elongation factor G
Paralog alert: 0.37 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: EFG LEPA RF3 TYPA
RS12 - 30S ribosomal protein S12
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RS12
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
270_F 36_R 1.08 0.00
427_D 36_R 1.08 0.00
13_I 54_R 1.05 0.00
603_E 105_S 0.99 0.00
270_F 38_Y 0.96 0.00
519_V 82_I 0.93 0.00
410_E 30_K 0.91 0.00
675_K 49_L 0.90 0.00
485_K 82_I 0.87 0.00
427_D 38_Y 0.85 0.00
522_M 52_V 0.82 0.00
6_P 111_K 0.82 0.00
84_I 54_R 0.82 0.00
621_V 119_V 0.81 0.00
203_E 79_V 0.81 0.00
319_A 121_R 0.79 0.00
668_T 105_S 0.78 0.00
352_S 30_K 0.78 0.00
222_L 101_A 0.78 0.00
309_R 112_Q 0.77 0.00
644_G 82_I 0.77 0.00
643_K 105_S 0.76 0.00
164_A 4_V 0.76 0.00
269_A 60_G 0.76 0.00
288_S 65_S 0.75 0.00
352_S 111_K 0.75 0.00
307_A 27_C 0.75 0.00
447_V 52_V 0.74 0.00
70_A 27_C 0.74 0.00
447_V 38_Y 0.74 0.00
116_V 38_Y 0.73 0.00
45_D 124_A 0.72 0.00
213_E 121_R 0.72 0.00
688_D 105_S 0.72 0.00
210_D 108_K 0.72 0.00
467_D 104_C 0.72 0.00
290_V 65_S 0.72 0.00
291_D 65_S 0.72 0.00
545_I 56_R 0.72 0.00
560_Q 68_G 0.71 0.00
146_R 38_Y 0.71 0.00
263_L 53_C 0.71 0.00
116_V 52_V 0.71 0.00
32_F 58_T 0.71 0.00
628_T 54_R 0.71 0.00
231_E 122_P 0.71 0.00
329_F 105_S 0.71 0.00
522_M 58_T 0.71 0.00
525_L 82_I 0.70 0.00
334_T 36_R 0.70 0.00
329_F 70_E 0.70 0.00
210_D 20_N 0.70 0.00
500_D 70_E 0.70 0.00
175_A 8_V 0.69 0.00
117_G 20_N 0.69 0.00
383_A 5_N 0.69 0.00
153_K 21_V 0.69 0.00
457_I 111_K 0.69 0.00
146_R 52_V 0.68 0.00
514_Q 49_L 0.68 0.00
701_A 101_A 0.68 0.00
253_R 94_R 0.68 0.00
437_R 108_K 0.68 0.00
605_F 36_R 0.68 0.00
507_K 70_E 0.67 0.00
169_L 56_R 0.67 0.00
694_V 35_T 0.67 0.00
507_K 54_R 0.67 0.00
579_H 82_I 0.67 0.00
585_D 10_K 0.67 0.00
83_R 82_I 0.66 0.00
696_Q 70_E 0.66 0.00
146_R 40_T 0.66 0.00
435_L 122_P 0.66 0.00
16_S 53_C 0.66 0.00
592_A 49_L 0.66 0.00
694_V 17_A 0.66 0.00
683_E 26_A 0.66 0.00
211_M 8_V 0.66 0.00
215_A 68_G 0.66 0.00
540_I 119_V 0.66 0.00
523_Y 19_S 0.65 0.00
381_D 94_R 0.65 0.00
473_M 20_N 0.65 0.00
700_E 30_K 0.65 0.00
256_V 65_S 0.65 0.00
357_R 119_V 0.65 0.00
189_K 14_R 0.65 0.00
605_F 38_Y 0.65 0.00
103_M 54_R 0.64 0.00
360_F 104_C 0.64 0.00
491_R 38_Y 0.64 0.00
449_T 98_V 0.64 0.00
559_E 113_A 0.63 0.00
623_T 70_E 0.63 0.00
585_D 26_A 0.63 0.00
408_R 64_T 0.63 0.00
73_S 97_T 0.63 0.00
103_M 59_N 0.63 0.00
576_I 52_V 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0329 seconds.