May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ACP - SLYA
UniProt: P0A6A8 - P0A8W2
Length: 222
Sequences: 190
Seq/Len: 0.89
I_Prob: 0.00

ACP - Acyl carrier protein
Paralog alert: 0.32 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: ACP
SLYA - Transcriptional regulator SlyA
Paralog alert: 0.89 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: MARR MPRA SLYA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
41_V 75_L 1.40 0.00
14_E 125_Q 1.33 0.00
51_F 77_S 1.20 0.00
49_E 78_R 1.18 0.00
49_E 132_K 1.17 0.00
28_S 67_L 1.15 0.00
14_E 55_A 1.13 0.00
72_Y 68_D 1.12 0.00
63_I 52_L 1.09 0.00
26_N 81_C 1.09 0.00
51_F 128_T 1.09 0.00
47_L 98_P 1.06 0.00
11_I 90_I 1.04 0.00
12_I 96_A 1.04 0.00
54_E 76_I 1.03 0.00
58_E 52_L 1.02 0.00
40_T 88_K 1.02 0.00
73_I 101_S 1.00 0.00
73_I 137_I 1.00 0.00
60_A 29_L 0.99 0.00
73_I 133_L 0.98 0.00
74_N 80_T 0.98 0.00
29_F 119_S 0.98 0.00
28_S 89_R 0.97 0.00
47_L 114_I 0.96 0.00
73_I 62_S 0.96 0.00
27_A 126_L 0.95 0.00
66_V 98_P 0.93 0.00
5_E 118_I 0.93 0.00
8_V 66_T 0.91 0.00
31_E 82_A 0.91 0.00
67_Q 119_S 0.91 0.00
66_V 76_I 0.90 0.00
59_E 137_I 0.89 0.00
50_E 95_K 0.89 0.00
59_E 121_E 0.89 0.00
51_F 31_Q 0.89 0.00
12_I 101_S 0.88 0.00
72_Y 61_P 0.88 0.00
59_E 100_I 0.88 0.00
54_E 120_A 0.88 0.00
75_G 93_T 0.88 0.00
42_E 134_E 0.86 0.00
19_K 88_K 0.85 0.00
18_V 36_T 0.85 0.00
21_E 79_Q 0.84 0.00
40_T 117_G 0.83 0.00
67_Q 120_A 0.83 0.00
25_N 31_Q 0.83 0.00
14_E 77_S 0.82 0.00
71_D 89_R 0.82 0.00
67_Q 46_D 0.82 0.00
21_E 95_K 0.82 0.00
40_T 69_Q 0.82 0.00
69_A 83_S 0.81 0.00
51_F 29_L 0.81 0.00
73_I 115_L 0.81 0.00
32_D 116_H 0.81 0.00
76_H 118_I 0.80 0.00
44_V 29_L 0.80 0.00
35_A 128_T 0.80 0.00
24_T 113_E 0.80 0.00
65_T 133_L 0.79 0.00
24_T 108_N 0.79 0.00
66_V 63_L 0.79 0.00
62_K 139_E 0.78 0.00
53_T 50_I 0.78 0.00
31_E 55_A 0.78 0.00
72_Y 64_V 0.78 0.00
31_E 36_T 0.78 0.00
20_Q 63_L 0.78 0.00
40_T 65_R 0.77 0.00
8_V 28_E 0.77 0.00
47_L 33_H 0.77 0.00
71_D 29_L 0.77 0.00
58_E 110_T 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0582 seconds.