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OPENSEQ.org

SYFA - TRML
UniProt: P08312 - P0AGJ7
Length: 484
Sequences: 399
Seq/Len: 0.85
I_Prob: 0.00

SYFA - Phenylalanine--tRNA ligase alpha subunit
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SYFA
TRML - tRNA (cytidine(34)-2'-O)-methyltransferase
Paralog alert: 0.90 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: RLMB TRML
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
267_L 101_P 1.21 0.00
259_V 97_L 1.17 0.00
133_I 82_G 1.15 0.00
28_R 9_P 1.15 0.00
247_Y 138_S 1.10 0.00
316_F 67_L 1.08 0.00
213_I 21_L 1.07 0.00
112_T 124_M 1.07 0.00
86_R 71_N 1.06 0.00
234_F 101_P 1.06 0.00
94_V 126_P 1.00 0.00
315_F 45_R 1.00 0.00
123_L 121_R 0.99 0.00
155_H 56_A 0.98 0.00
231_L 6_L 0.97 0.00
135_D 32_I 0.97 0.00
46_R 9_P 0.96 0.00
178_M 98_M 0.95 0.00
219_S 42_K 0.95 0.00
64_K 98_M 0.94 0.00
61_N 42_K 0.94 0.00
37_H 49_L 0.94 0.00
9_A 55_T 0.93 0.00
71_L 75_L 0.92 0.00
232_R 124_M 0.92 0.00
125_F 19_I 0.91 0.00
214_V 139_V 0.91 0.00
216_T 139_V 0.91 0.00
123_L 104_R 0.90 0.00
194_Y 121_R 0.90 0.00
127_V 133_L 0.90 0.00
214_V 86_H 0.89 0.00
110_T 47_A 0.89 0.00
138_H 36_G 0.88 0.00
312_L 135_N 0.88 0.00
288_E 8_E 0.88 0.00
115_R 6_L 0.88 0.00
17_Q 108_A 0.88 0.00
304_M 10_E 0.88 0.00
283_V 40_D 0.87 0.00
15_I 104_R 0.87 0.00
215_D 136_A 0.87 0.00
272_C 91_Y 0.87 0.00
313_R 7_Y 0.87 0.00
80_S 134_S 0.86 0.00
308_G 7_Y 0.86 0.00
185_I 36_G 0.86 0.00
133_I 89_V 0.86 0.00
30_E 30_H 0.86 0.00
205_M 49_L 0.86 0.00
4_L 126_P 0.86 0.00
91_T 85_A 0.85 0.00
106_L 41_D 0.85 0.00
69_Q 67_L 0.85 0.00
204_P 49_L 0.85 0.00
194_Y 135_N 0.85 0.00
169_Q 78_L 0.85 0.00
122_E 17_N 0.85 0.00
308_G 5_V 0.85 0.00
214_V 90_S 0.84 0.00
325_Q 44_L 0.84 0.00
216_T 75_L 0.84 0.00
182_Q 88_A 0.84 0.00
23_A 92_Q 0.84 0.00
114_D 82_G 0.84 0.00
171_S 123_P 0.83 0.00
4_L 33_E 0.83 0.00
151_A 106_L 0.83 0.00
108_P 142_Y 0.83 0.00
125_F 134_S 0.83 0.00
52_E 93_D 0.82 0.00
88_A 55_T 0.82 0.00
67_V 44_L 0.82 0.00
71_L 66_F 0.82 0.00
43_T 10_E 0.82 0.00
19_S 18_I 0.82 0.00
159_W 64_R 0.81 0.00
49_P 48_G 0.81 0.00
71_L 9_P 0.81 0.00
193_V 31_I 0.81 0.00
243_F 147_Q 0.81 0.00
22_A 91_Y 0.81 0.00
186_R 140_V 0.81 0.00
161_D 117_E 0.80 0.00
36_G 10_E 0.80 0.00
4_L 34_P 0.80 0.00
68_Q 143_E 0.80 0.00
20_D 36_G 0.80 0.00
323_L 133_L 0.80 0.00
257_V 51_Y 0.80 0.00
116_I 71_N 0.80 0.00
188_I 88_A 0.79 0.00
127_V 86_H 0.79 0.00
47_E 29_L 0.79 0.00
143_L 123_P 0.79 0.00
211_G 136_A 0.79 0.00
169_Q 31_I 0.79 0.00
158_F 6_L 0.79 0.00
204_P 135_N 0.79 0.00
313_R 48_G 0.78 0.00
309_V 25_T 0.78 0.00
216_T 55_T 0.78 0.00
178_M 49_L 0.78 0.00
300_E 62_D 0.78 0.00
219_S 103_T 0.78 0.00
54_P 35_M 0.78 0.00
77_E 112_D 0.77 0.00
92_I 81_K 0.77 0.00
222_N 73_Q 0.77 0.00
172_G 24_N 0.77 0.00
34_K 120_I 0.77 0.00
56_A 47_A 0.77 0.00
98_G 135_N 0.77 0.00
203_T 21_L 0.77 0.00
227_L 139_V 0.77 0.00
83_L 9_P 0.77 0.00
192_R 99_F 0.76 0.00
75_K 124_M 0.76 0.00
38_L 5_V 0.76 0.00
146_P 40_D 0.76 0.00
20_D 19_I 0.76 0.00
216_T 94_G 0.76 0.00
306_R 49_L 0.76 0.00
192_R 84_P 0.76 0.00
207_H 5_V 0.75 0.00
289_V 69_A 0.75 0.00
52_E 7_Y 0.75 0.00
114_D 134_S 0.75 0.00
178_M 36_G 0.75 0.00
259_V 117_E 0.75 0.00
73_A 107_P 0.75 0.00
79_E 49_L 0.75 0.00
307_Y 7_Y 0.75 0.00
320_L 145_W 0.75 0.00
259_V 59_R 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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