May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

AROB - AROC
UniProt: P07639 - P12008
Length: 723
Sequences: 521
Seq/Len: 0.74
I_Prob: 0.00

AROB - 3-dehydroquinate synthase
Paralog alert: 0.75 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: ADH2 AROB EUTG FUCO GLDA YBDH YQHD
AROC - Chorismate synthase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: AROC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
172_T 81_I 1.48 0.00
130_T 200_G 1.33 0.00
330_M 281_S 1.19 0.00
314_A 270_S 1.09 0.00
125_I 281_S 1.09 0.00
186_I 334_A 1.09 0.00
239_L 282_S 1.02 0.00
144_A 296_S 1.01 0.00
69_L 75_V 1.00 0.00
172_T 30_V 1.00 0.00
193_D 156_C 0.98 0.00
99_L 187_D 0.96 0.00
328_G 286_I 0.92 0.00
292_R 323_C 0.92 0.00
46_A 151_I 0.92 0.00
14_P 39_A 0.91 0.00
245_L 154_R 0.90 0.00
343_V 296_S 0.90 0.00
279_S 71_V 0.90 0.00
90_Q 123_G 0.89 0.00
93_H 282_S 0.89 0.00
74_Q 214_V 0.89 0.00
122_V 214_V 0.88 0.00
40_V 81_I 0.88 0.00
14_P 228_A 0.86 0.00
158_Y 296_S 0.86 0.00
118_Y 218_L 0.86 0.00
90_Q 182_D 0.85 0.00
100_V 71_V 0.85 0.00
40_V 65_V 0.85 0.00
10_E 67_I 0.84 0.00
200_L 334_A 0.84 0.00
145_V 223_F 0.84 0.00
102_L 239_A 0.84 0.00
119_Q 126_S 0.84 0.00
111_T 30_V 0.83 0.00
188_Y 143_K 0.83 0.00
197_F 207_V 0.83 0.00
250_G 187_D 0.83 0.00
18_A 141_A 0.82 0.00
180_S 245_I 0.82 0.00
301_G 289_H 0.82 0.00
304_V 330_P 0.82 0.00
26_A 71_V 0.82 0.00
249_F 209_V 0.82 0.00
222_C 323_C 0.81 0.00
211_D 281_S 0.81 0.00
339_G 81_I 0.81 0.00
127_V 110_T 0.81 0.00
334_L 255_R 0.81 0.00
39_L 37_T 0.81 0.00
102_L 216_A 0.81 0.00
186_I 271_N 0.80 0.00
64_V 113_Q 0.80 0.00
245_L 32_P 0.80 0.00
36_Q 276_I 0.80 0.00
330_M 154_R 0.79 0.00
28_F 211_A 0.79 0.00
277_R 236_S 0.79 0.00
4_I 281_S 0.79 0.00
23_N 39_A 0.79 0.00
6_V 140_I 0.78 0.00
249_F 118_R 0.77 0.00
102_L 172_Q 0.77 0.00
130_T 345_L 0.77 0.00
171_K 39_A 0.76 0.00
20_G 160_M 0.76 0.00
94_G 245_I 0.76 0.00
127_V 337_A 0.76 0.00
238_G 135_V 0.76 0.00
238_G 334_A 0.76 0.00
137_S 299_T 0.75 0.00
148_P 197_K 0.75 0.00
130_T 178_F 0.75 0.00
317_P 305_I 0.74 0.00
35_E 162_D 0.74 0.00
219_I 81_I 0.74 0.00
297_L 46_D 0.74 0.00
75_Y 180_C 0.74 0.00
186_I 43_H 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0448 seconds.