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OPENSEQ.org

PLDB - RHTB
UniProt: P07000 - P0AG34
Length: 546
Sequences: 410
Seq/Len: 0.81
I_Prob: 0.00

PLDB - Lysophospholipase L2
Paralog alert: 0.70 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: BIOH DLHH MENH MHPC PLDB RUTD YBFF YCJY YFHR YGHX YJFP
RHTB - Homoserine/homoserine lactone efflux protein
Paralog alert: 0.74 [within 20: 0.23] - ratio of genomes with paralogs
Cluster includes: EAMB LEUE RHTB RHTC YAHN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
57_V 81_A 1.26 0.00
299_V 74_V 1.16 0.00
58_V 44_A 1.04 0.00
135_I 190_G 1.00 0.00
122_Q 159_I 0.96 0.00
303_A 117_F 0.93 0.00
58_V 184_A 0.92 0.00
259_A 132_L 0.91 0.00
82_F 65_F 0.90 0.00
308_L 131_A 0.85 0.00
260_T 58_G 0.85 0.00
256_G 48_T 0.85 0.00
145_S 8_A 0.84 0.00
82_F 196_V 0.83 0.00
142_G 200_L 0.82 0.00
115_D 8_A 0.82 0.00
123_Q 107_S 0.82 0.00
135_I 93_A 0.81 0.00
202_R 152_V 0.81 0.00
35_F 157_V 0.80 0.00
58_V 112_F 0.80 0.00
327_N 84_I 0.79 0.00
156_C 98_D 0.79 0.00
195_A 18_L 0.79 0.00
135_I 117_F 0.77 0.00
50_A 148_I 0.77 0.00
200_R 85_W 0.76 0.00
135_I 32_L 0.75 0.00
53_H 10_L 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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