May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PLDB - YIGI
UniProt: P07000 - P0ADP2
Length: 495
Sequences: 283
Seq/Len: 0.65
I_Prob: 0.00

PLDB - Lysophospholipase L2
Paralog alert: 0.70 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: BIOH DLHH MENH MHPC PLDB RUTD YBFF YCJY YFHR YGHX YJFP
YIGI - Uncharacterized protein YigI
Paralog alert: 0.62 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: ENTH PAAI YDII YIGI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
243_E 23_P 1.15 0.00
326_F 137_L 1.09 0.00
315_R 131_A 1.04 0.00
326_F 74_L 1.01 0.00
206_F 135_V 1.01 0.00
120_F 76_C 1.01 0.00
45_F 102_I 0.98 0.00
159_I 119_A 0.96 0.00
225_Y 111_P 0.95 0.00
188_P 71_A 0.94 0.00
70_Y 135_V 0.91 0.00
90_R 50_M 0.90 0.00
136_L 127_G 0.90 0.00
71_A 153_M 0.90 0.00
92_Q 137_L 0.89 0.00
36_T 40_A 0.89 0.00
123_Q 119_A 0.89 0.00
122_Q 137_L 0.89 0.00
82_F 107_D 0.88 0.00
160_A 31_E 0.87 0.00
265_L 126_A 0.87 0.00
67_Y 75_V 0.87 0.00
265_L 76_C 0.87 0.00
301_K 35_Y 0.86 0.00
316_S 34_R 0.85 0.00
135_I 108_Y 0.85 0.00
328_R 37_K 0.85 0.00
173_P 76_C 0.85 0.00
70_Y 101_T 0.84 0.00
237_T 75_V 0.84 0.00
114_V 24_F 0.83 0.00
302_G 127_G 0.83 0.00
301_K 45_K 0.83 0.00
73_L 154_V 0.83 0.00
70_Y 150_A 0.83 0.00
325_F 149_T 0.82 0.00
39_D 66_S 0.81 0.00
137_A 49_M 0.81 0.00
326_F 12_K 0.81 0.00
288_A 42_L 0.80 0.00
244_S 108_Y 0.80 0.00
136_L 109_L 0.79 0.00
95_S 119_A 0.79 0.00
255_A 36_E 0.79 0.00
265_L 152_Y 0.78 0.00
163_A 117_F 0.78 0.00
153_P 111_P 0.78 0.00
267_A 51_V 0.78 0.00
73_L 144_Y 0.78 0.00
288_A 64_I 0.78 0.00
320_H 124_L 0.77 0.00
133_R 30_M 0.77 0.00
281_F 67_A 0.76 0.00
317_V 121_S 0.76 0.00
185_E 23_P 0.76 0.00
173_P 147_S 0.76 0.00
155_V 30_M 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0436 seconds.