May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RBSD - YEJF
UniProt: P04982 - P33916
Length: 668
Sequences: 391
Seq/Len: 0.63
I_Prob: 0.00

RBSD - D-ribose pyranase
Paralog alert: 0.40 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: FUCM RBSD
YEJF - Uncharacterized ABC transporter ATP-binding protein YejF
Paralog alert: 0.90 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ALSA ARAG GSIA LSRA MGLA MODF RBSA UUP XYLG YBHF YBIT YEJF YHES YJJK YPHE YTFR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
24_L 458_K 1.42 0.00
8_N 307_F 1.17 0.00
18_L 253_T 1.14 0.00
58_V 332_L 1.09 0.00
116_S 437_A 1.00 0.00
129_A 170_A 0.99 0.00
89_E 230_M 0.99 0.00
11_I 209_G 0.95 0.00
10_D 193_A 0.94 0.00
53_Q 179_I 0.93 0.00
44_L 505_V 0.92 0.00
137_V 58_L 0.91 0.00
62_M 14_G 0.91 0.00
120_I 209_G 0.91 0.00
54_V 34_A 0.91 0.00
26_V 220_V 0.91 0.00
6_V 105_L 0.90 0.00
120_I 37_T 0.90 0.00
98_T 27_D 0.90 0.00
137_V 276_L 0.90 0.00
133_L 32_I 0.90 0.00
3_K 409_M 0.89 0.00
69_I 176_E 0.88 0.00
137_V 162_R 0.88 0.00
53_Q 344_F 0.86 0.00
101_I 276_L 0.86 0.00
6_V 198_L 0.86 0.00
6_V 36_E 0.85 0.00
26_V 170_A 0.84 0.00
25_V 143_I 0.84 0.00
138_T 209_G 0.84 0.00
6_V 134_I 0.84 0.00
38_T 387_E 0.84 0.00
120_I 304_N 0.83 0.00
16_S 60_P 0.83 0.00
24_L 79_L 0.83 0.00
55_L 467_L 0.83 0.00
104_T 110_T 0.82 0.00
33_I 138_L 0.82 0.00
44_L 83_D 0.82 0.00
9_S 10_N 0.82 0.00
37_T 102_M 0.81 0.00
40_I 364_I 0.81 0.00
73_I 361_R 0.81 0.00
26_V 41_V 0.81 0.00
135_A 78_L 0.81 0.00
3_K 88_G 0.81 0.00
29_A 436_I 0.80 0.00
3_K 388_G 0.80 0.00
120_I 310_R 0.80 0.00
118_A 405_V 0.80 0.00
77_N 130_A 0.80 0.00
120_I 7_A 0.80 0.00
120_I 95_A 0.80 0.00
118_A 212_F 0.80 0.00
54_V 227_V 0.79 0.00
122_S 506_E 0.79 0.00
64_V 168_A 0.79 0.00
39_R 330_L 0.79 0.00
24_L 238_Q 0.78 0.00
59_T 367_V 0.78 0.00
132_I 29_S 0.78 0.00
7_L 112_E 0.78 0.00
14_V 280_Q 0.78 0.00
24_L 308_T 0.77 0.00
130_N 55_I 0.77 0.00
43_A 174_R 0.77 0.00
109_F 120_S 0.77 0.00
54_V 170_A 0.77 0.00
139_F 462_A 0.77 0.00
17_R 112_E 0.77 0.00
139_F 67_L 0.77 0.00
79_Q 396_L 0.77 0.00
119_V 270_E 0.76 0.00
129_A 389_L 0.76 0.00
100_E 362_H 0.76 0.00
24_L 169_M 0.76 0.00
128_Y 434_I 0.76 0.00
24_L 328_T 0.76 0.00
67_A 138_L 0.76 0.00
3_K 71_I 0.76 0.00
33_I 424_A 0.76 0.00
39_R 22_R 0.76 0.00
33_I 22_R 0.76 0.00
101_I 192_Q 0.75 0.00
2_K 456_L 0.75 0.00
10_D 10_N 0.75 0.00
120_I 75_G 0.75 0.00
135_A 216_N 0.75 0.00
61_E 217_L 0.75 0.00
27_C 98_F 0.75 0.00
104_T 207_N 0.75 0.00
134_C 24_V 0.74 0.00
113_T 482_I 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1682 seconds.