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OPENSEQ.org

KDSB - YCAR
UniProt: P04951 - P0AAZ7
Length: 308
Sequences: 223
Seq/Len: 0.73
I_Prob: 0.01

KDSB - 3-deoxy-manno-octulosonate cytidylyltransferase
Paralog alert: 0.32 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: KDSB
YCAR - UPF0434 protein YcaR
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YCAR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
131_H 36_F 1.55 0.01
83_V 45_L 1.45 0.01
137_F 14_C 1.42 0.01
186_G 48_T 1.33 0.00
192_I 9_I 1.31 0.00
112_V 45_L 1.25 0.00
192_I 45_L 1.24 0.00
222_H 10_A 1.23 0.00
82_V 8_I 1.23 0.00
107_T 36_F 1.21 0.00
93_V 38_L 1.10 0.00
77_E 45_L 1.09 0.00
182_L 41_G 1.07 0.00
141_A 10_A 1.07 0.00
123_M 36_F 1.02 0.00
18_G 44_V 1.00 0.00
148_A 38_L 1.00 0.00
148_A 4_R 1.00 0.00
162_W 1_M 1.00 0.00
226_A 36_F 0.99 0.00
30_I 38_L 0.98 0.00
241_E 28_I 0.97 0.00
54_V 4_R 0.96 0.00
34_L 15_N 0.95 0.00
180_R 2_D 0.95 0.00
103_M 1_M 0.95 0.00
146_L 38_L 0.94 0.00
76_T 8_I 0.93 0.00
27_K 8_I 0.92 0.00
126_L 10_A 0.92 0.00
227_Q 36_F 0.91 0.00
54_V 46_L 0.90 0.00
4_V 41_G 0.90 0.00
184_I 45_L 0.90 0.00
208_M 9_I 0.89 0.00
115_N 10_A 0.89 0.00
179_L 25_Q 0.88 0.00
245_A 55_A 0.87 0.00
136_A 14_C 0.87 0.00
194_R 4_R 0.87 0.00
132_N 36_F 0.87 0.00
198_W 10_A 0.87 0.00
132_N 38_L 0.86 0.00
104_I 29_C 0.85 0.00
43_E 54_T 0.85 0.00
116_L 46_L 0.85 0.00
201_S 39_R 0.85 0.00
53_D 15_N 0.84 0.00
226_A 10_A 0.84 0.00
161_P 32_D 0.84 0.00
70_A 36_F 0.84 0.00
25_N 48_T 0.84 0.00
145_V 20_Y 0.84 0.00
174_V 13_V 0.83 0.00
67_M 55_A 0.83 0.00
243_V 41_G 0.83 0.00
14_T 52_V 0.83 0.00
242_R 39_R 0.83 0.00
130_I 54_T 0.82 0.00
189_A 46_L 0.82 0.00
6_I 8_I 0.82 0.00
79_L 28_I 0.81 0.00
237_P 33_N 0.81 0.00
108_I 1_M 0.81 0.00
35_E 8_I 0.81 0.00
128_V 10_A 0.81 0.00
243_V 37_P 0.81 0.00
191_F 8_I 0.80 0.00
178_F 10_A 0.80 0.00
20_P 5_L 0.80 0.00
182_L 1_M 0.80 0.00
159_T 36_F 0.80 0.00
158_A 42_I 0.80 0.00
76_T 14_C 0.80 0.00
76_T 29_C 0.79 0.00
161_P 29_C 0.79 0.00
105_P 10_A 0.79 0.00
214_V 22_Q 0.79 0.00
238_E 41_G 0.78 0.00
133_A 20_Y 0.78 0.00
79_L 48_T 0.78 0.00
231_G 32_D 0.78 0.00
133_A 36_F 0.78 0.00
108_I 10_A 0.78 0.00
217_Y 4_R 0.78 0.00
151_Y 29_C 0.77 0.00
138_N 30_K 0.77 0.00
206_I 9_I 0.76 0.00
69_R 39_R 0.76 0.00
79_L 10_A 0.76 0.00
86_C 19_W 0.75 0.00
5_V 28_I 0.75 0.00
30_I 24_K 0.75 0.00
41_G 45_L 0.75 0.00
112_V 7_E 0.75 0.00
94_I 22_Q 0.74 0.00
31_V 40_D 0.74 0.00
232_T 15_N 0.74 0.00
82_V 5_L 0.74 0.00
129_P 34_L 0.73 0.00
134_E 24_K 0.73 0.00
62_G 49_E 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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