>seq_1
MAPISVNSVKTLRFTQSQIFSKLRCLQSVFFVNAVRLPIVTALMLSLLEEEYGDCLTGFKLVDRRQIKLCSDFEQDEHIGTETCFVCEHETCDKRGWEYL
LECGYSVSALASCFQFRACECRRCSLCWALVKLLMHNIKDNVDWQIQMTSLLLKANVDYKLAQLIRVVIITLKRKWLFNVLDCECAFRPLALLRWALVCE
SEIRRCKRSVVSDSKWLAAWVFKTCFQRSLNKSGIVGAGRLGLLISVNRFDFHSGFKFSTYARWWVMHRMLDMSMSSATAQNFGTDILKIRSVGIGQNVS
NTISIVKANRYRTVSLDQTIGDNCDLHAVTAYDDSAADVKCCEDVARAFKSLKRLTLLSPREERVLRLRGHSLTDFKWSLAKIGFELGLSKERIRQIELL
ASARVRALNERAMLELLCL
>tr|A0A097GZS6|A0A097GZS6_9RHIZ RNA polymerase sigma factor rpoD OS=Candidatus Hodgkinia cicadicola GN=rpoD PE=4 SV=1
----------------------------MFFVNAVRLPVVTTLMLSILEEEYSDCLTSFKLVDRRLIKLCCDFEQNEHTG--DCSVCEHETCDKQSWEYL
LECEYSAGAITSCFQFRVCECRRCLLCWALVKLLVHNLKDNVNWQIRMASLLLKANVDYKFAQLIRVLIAILKRKWLFTALDCKCAVRPLALLRWALVCE
SEIRRYKRSVVSDSRWLAAWIFKTCFQYSLNKSSIVRAGQLGLLISVNRFDFHSGFKFSTYARWWVRHRMLDMSALSATAQTFRTNVLKVRSVGVGQNIS
NTISIVKAERYRMVSLDQALGGNCDLHAVTAYDNTTVNAKCYDGTARAFKFLRRLALLSSREERVLRLRGHSLTDFKRSLAKIGCELGLCKERIRQIELT
ASARVRTLDEAVARKLLGL
>tr|A0A060KRR1|A0A060KRR1_9RHIZ RNA polymerase sigma factor rpoD OS=Candidatus Hodgkinia cicadicola GN=rpoD PE=4 SV=1
-----------MKLAQSQIFSKLRRLQCVFFVNAVRLPTVTALMLSLLEEEYGDCLTGFKLVDRRLIKLCCDFERSEHVGTGDCFVCEHETCDKRSWEYL
LECEYSAGVITSCFQFRVCECRRCSLCWALVKLLMHCLKDSNNWQVQMASLLLKANVDYKLAQLIRVVVTTLKRKWLFSALDCECALRPLALLRWALVCE
SKIRYYKRLVVSDSKWLAAWIFKTCFQYSFNKSSIVRAGRLGLLISVNRFDFYSGFKFSTYARWWVRHRMLDMSTLSAATQTLTTSILKIRSVGTGQSVS
STVSVVKADRYRAVSLDQAIGDNSDLHAVTA-DDAAVSVKCHDGVARAFKFLRRLALLSPREERVLRLRGCSLTGSGRSLAKIGFELGVSKERVRQIELT
AGARVRTLDEAIVPSLLCS
>tr|C6UMV6|C6UMV6_HODCD Putative RNA polymerase sigma factor OS=Hodgkinia cicadicola (strain Dsem) GN=rpoD PE=4 SV=1
----------------------MHVAACACF---VKLPPVAVLARLVASEVWAGSLGGAEVANKRA-----GF------GGSAS-----SGCVASTGAYK
LEKLFGASLRGVCAQFKSCACRHCGLWRALLKSLCCKPGLATRWVA--VSALLKLGLDQKLTQLARALIVVSKFDLGLLGIRCIRKARALMWLATAANVA
NNLKAAKRSLVGSSASVIADVIKAYPSCDAQDPALASAGRDGLMASANRFDLVSGYRFAAYSKWWVKHNVIAHVLAGAKGWA----------------AA
SAKQLAGAAKLKRLSLDYCGGGASLHEAVELKPAARGAQPRFEARCDDYTLISSLMLLAPREERVVRLRGRARAPFSWSLRRIGLDVGLTRERVRQLALS
ASTKLASAAL------SCS
>tr|A0A0M0F1V2|A0A0M0F1V2_9RHIZ RNA polymerase sigma factor rpoD OS=Candidatus Hodgkinia cicadicola GN=rpoD PE=4 SV=1
----MDFKINYSKETETKLYNMICKLQFILFVNIIKSPIIIKFLYLIMEGSHSCVLDVCEILDINSSYD--SFK-------------LNNHCSSWTDNYS
QERSYIGEGNENNSWFKSCKCRTCSLIRLLYKAVLCQRSLRSHWCI--VNILIKLGPDYKVIQLLNILLCFFKQNIDVIRLICLHQKKTLTHLVSVLKTD
SILRRIKRQMFKACSWIPMNISAAYCDYGVKRSTLITIGTTGLLMSINRFNFLSNQYFSAYAKQWVKQKIIQKIIEDNGGLNHI--------------RN
SDAKDNKMVKLKQLSLDYCFDDSDLHETIA--ENEAVEPDVKLDITDVYMTTAKLALLSPTEERSIRLKQLSH--DKLSLSNIGSELGLSKEQVRQLLLS
ANAKFKEINCLDIMAYPCE
>tr|R5E5I1|R5E5I1_9BURK RNA polymerase sigma factor RpoD OS=Parasutterella excrementihominis CAG:233 GN=rpoD PE=3 SV=1
-----------------ELYQDLKHAYEA---EGYRSPA-----FIKAQDAIQEELLSLRFTANTVERLCTMLK-----T--------------------
----QVEEVRKYESRIYDIVVNRAKMPRELFLKEFLDNETNLAWSQ----AIAESDKPYA-IDVKRKLPEILQQQLQ--NI-QNAVTLPLKDLKDVATGE
AKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMDMPED
KIRKILKIA-KEPISMETPIGDDEDSHLGDFLEDFGTVAP-AEAAQQSSITKEVLDSLTPREAKVLRMRGI-EMSTDHTLEEVGRQFDVTRERIRQIEAK
ALRKLRHPSRSD-------
>tr|V2GKV3|V2GKV3_9BURK RNA polymerase sigma factor RpoD OS=Cupriavidus sp. HPC(L) GN=rpoD PE=3 SV=1
-----------------DQFDKMRRAFEK---EGYKSKP-----YIKAQEAIQNELMGIRFTARNVERLCDTLR-----G--------------------
----QVDEVRKLERAILNIVVDKCGMPRADFVARFPGNETNLDWIH----TVVADNKPYS-TIVERNVPAVLQQKLI--DL-QARVVLPLKELKEVSEGE
KRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEMPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDTNTLAP-AEAALHGSVVKDVLDSLTPREAKVLRMRGI-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSD-------
>tr|M1T5I6|M1T5I6_9PROT RNA polymerase sigma factor RpoD OS=beta proteobacterium CB GN=rpoD PE=3 SV=1
-----------------TQADKMRRAFDK---EGYNCPA-----YIKAQEAIRGELLGFRLTAKSVEKLCDTMR-----S--------------------
----QVDQVWKLERGIVSLLVDKVGVNRGEVLKDFPKMSMNLEWTT----KLLKENKPYT-ALLQRNVPAILQQKLI--DI-QTRVVLPLPELKEVIAGE
KRAREAKREMTVANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEIPED
KIRKIMKIA-KEPISMETPIGDDEDSHLGDFIEDGNTLAP-AEAALHDSVVKDVLDSLTPREAKVLRMRGV-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKMRHPSRSD-------
>tr|S5R1F3|S5R1F3_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Profftella armatura GN=rpoD PE=3 SV=1
-----------------FHFDKMRKAFEK---EGYNSES-----YIKAHNNISNEMLGIRFTAKSIEKLCDTLR-----N--------------------
----QINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVD----NETKIQHDYN-LILCRNIPSILQQKLI--NL-QTDIVLPLNDLRDIIAGE
MKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKISRIGMEMPEE
KIRKIMKIA-KEPVSMESPVGDDEDSHLGDFIEDENMLAP-SDAALNASVVKDILNSLTPRESKVLRMRGI-EMSSDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRYY-------
>tr|A0A0Q7MBX6|A0A0Q7MBX6_9BURK RNA polymerase subunit sigma-70 OS=Massilia sp. Root133 GN=ASD28_06160 PE=4 SV=1
-----------------QQFDKMRKAYEK---QGYNSDG-----YIKAQEAISNELLGIRFTAKVVEKLCDTLR-----G--------------------
----QVDEVRHIEKQILDVAVNRCGMPRAHFIKVFPGNETNLDWVD----GEVNAGHAYS-AILGRNIPTILQQRLI--DL-QARVVLPLPDLRNIAAGE
MKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEMPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDNNTLAP-SDAALHASVVKDVLDSLTPREAKVLRMRGI-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSD-------
>tr|A0A0Q5ZAW0|A0A0Q5ZAW0_9BURK RNA polymerase subunit sigma OS=Ramlibacter sp. Leaf400 GN=ASG30_10580 PE=4 SV=1
-----------------ELFEKVHKVYDK---EGYGTPS-----YMKCQKALSEELMTIRFTAKTIEKLCDMVR-----G--------------------
----QVDDVRKKERELRRIIVDKCGMPQETFIKEFPPNLLNLKWVE----KQAAAGKPWS-VVIARNIPPILQQKLM--DL-QSRVVVPLVELKEINEGE
ASSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEIPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDTGNTAP-IEAAMQAGVVKDILDSLTPREAKVLRMRGI-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLKHPSRSD-------
>tr|I4MUE0|I4MUE0_9BURK RNA polymerase sigma factor RpoD OS=Hydrogenophaga sp. PBC GN=rpoD PE=3 SV=1
-----------------GMFEKLHKTYDK---EGYGGAV-----YVKTQQAITEKLMTIRFTAKAIEKLCSTVR-----G--------------------
----QVDEIRKKERELRRIIVDKCGMPQETFIKDFPPNLLNLKWVE----KQAAAGKPWS-VIIERNIPPVLQQGLI--DI-QNSVVVPIDHLKDINNGE
ASSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEMPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDTTNTAP-IEAAMQAGVVKEILDSLTPREAKVLRMRGI-EMSNDHTLEEVGKQFDVTRERIRQIESK
AVRKLKHPSRSD-------
>tr|C3X4K6|C3X4K6_OXAFO RNA polymerase sigma factor RpoD OS=Oxalobacter formigenes HOxBLS GN=rpoD PE=3 SV=1
-----------------TYFKEMQQAFEK---DGYNSPA-----YVKAHNSISDELLGMRFTARFIEKLCDTLR-----T--------------------
----QMDDVRQIEREILNVAVNKCGVPRAHFIKTFPGNETNMEWVD----EEVHAGHPYS-EILSRNVPMILQQNLV--DI-EKRIGMPLADLREIVAGE
MRARKAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMDMPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDNNTLAP-ADAALHASVVKDVLDSLTPREAKVLRMRGV-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSD-------
>tr|A0A0Q7EQQ3|A0A0Q7EQQ3_9BURK RNA polymerase subunit sigma-70 OS=Massilia sp. Root418 GN=ASC94_28195 PE=4 SV=1
-----------------VQFEKMRKAA-----GGYGSPA-----YTKAQEAISSELLGIRFTAKVVEKLCDTLR-----G--------------------
----QMEQVRSIERAVLELCVNRCGMPRAHFIKVFPGNETDLDWVD----GEVDSAYPYS-AVLGRNVPAVLQSKMI--DL-QARVALPLADLRKIAAGE
KRARTAKREMTVANLRLVISIAKKYINRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRSIADMARTIRVPETINKMNRIGMEMPEN
KVREIMKIA-KEPISMETPMGEDGDSQLGDFIEDNTTLAP-LDAALHASVIKEVLDSLTPREAKVLRMRGV-EMSNDHTLEEVGKQFDVTRERIRQIEAK
AMSKLRQPSRSD-------
>tr|A0A0K1P8V7|A0A0K1P8V7_9DELT RNA polymerase sigma factor RpoD OS=Vulgatibacter incomptus GN=rpoD PE=3 SV=1
-----------------KLDLECRKI---DEPSDAKARA-----LRVLQDEMAEVLEELKLNKKQIDRVVDDFK-----R--------------------
----IIKTVDEAELELREV-EQRVGMAASELLELAKSMRETKGP-S----RAAKLGLTEDEEELIRNALTELEEKLE--RK-TGGVERCVAELRQTVLGE
RRADRAKQELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPETINKLIRTGMELPLD
KVRKVLKIA-KEPISLETPIGEEEDSHLGDFIEDKAIVSP-ADAVINMNQTRKVLATLTPREEKVLRMRGI-GEKSDHTLEEVGQDFEVTRERIRQIEAK
ALRKLRHPSRSK-------
>tr|K2A562|K2A562_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
-----------------LLSTEYNGL---DKLRDETQRA-----YEEVQGKMIACLHDIGFNRTTMNSFVEGLK-----R--------------------
----VLEEIGGLESAIDKH-LGKLNLSSDELLVVKKISSNSSYLQR----KITKTGLAKDELDILRKVET--------------KYETKLDDIKKSKYAE
QMVDKAKGDLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPETINRLVRTGMEMPIE
KVRKVLKIA-KEPISLETPIGEEEDSYLGDFIEDKIVMSP-NDAAQNFNETKEVLETLTPREEKVLRMRGI-HEKSDHTLEEVGRDFSVTRERIRQIEAK
ALRKLRHPSRAK-------
>tr|B8JDL7|B8JDL7_ANAD2 RNA polymerase sigma factor RpoD OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rpoD PE=3 SV=1
-----------------KLERDVAKV---RELSEVKRKE-----LKAIEAEMMENLEAIQLNKKQIDRIVLRLK-----S--------------------
----FIKRVEEAEREFFDC-ERRTGVPVKDLRRLLRETREDEAERK----KLAKLRCALDEEELILRVQE--------------EAEVPVEELRRTGDGE
RKAERAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPETINKLIRTGMELPLD
KVRKVLKIA-KEPISLETPIGEEEDSHLGDFIEDKSLVSP-SDAVINMNQTRKVLATLTPREEKVLRMRGI-GEKSDHTLEEVGQDFEVTRERIRQIEAK
ALRKLRHPSRSK-------
>tr|G2KPS9|G2KPS9_MICAA RNA polymerase sigma factor RpoD OS=Micavibrio aeruginosavorus (strain ARL-13) GN=rpoD PE=3 SV=1
-----------------KTYKKMQKVQQERFPPAATNKK-----YDDLKAQMVELMNEVRLNNARIEQLVGRLY-----K--------------------
----MNREVVSLEGRLMRLAV-DCGVKREDFLQNYYGSELDPNWLA----KVAKTGKGWA-KFAEKHVAEVIRTQIV--TV-TDDAGVPLGEFRRIQKGE
REAARAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKLVRTGLHMPLD
KVRKVLKIA-KEPVSLETPIGDEEDSTLGDFIEDKNALLP-VDAAIHSNTTTRVLATLTPREERVLRMRGI-GMNTDHTLEEVGQQFNVTRERIRQIEAK
ALRKLKHPSRSR-------
>tr|A2WDQ1|A2WDQ1_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia dolosa AU0158 GN=rpoD PE=3 SV=1
----------------SEWFDKMRRAFEK---EGYKSKA-----YLKAQETIQSELMTIRFTARTVERLCDTLR-----A--------------------
----QVDEVRQVERQILHIVVDKCGMPRSEFIARFPGNETDLDWAEKIA----AEGHPYSLSRNIPAIRE-QQQRLLD--L-QARVVLPLKDLKQMAAGE
LKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEMPET
RSADHEDRE-GA------DLDGNADRRRRRFPSRRLQHGR-RAACKHARGRARFADAARGGAADAFRHRD------EHRSHARGSRQAVRRDA-------
-------------------
>tr|A0A0J1CXT8|A0A0J1CXT8_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia glathei PML1(12) GN=rpoD PE=3 SV=1
----------------SEWFDKMRRAYEK---EGYKSKA-----YLKAQEAIQSELMTIRFTARTVERLCDTLR-----A--------------------
----QVDEVRQVERQILHTVVDKCGMPRAEFIARFPGSETDLEWSEKVV----AENHGYSLARNIPAIRE-QQQRLLD--L-QARVVLPLKDLKQMAAGE
LKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEMPED
KIRKIMKIA-KE------PIEDDDDSHLGDFIEDTNTVAP-ADAALHASVVKDVLDSLTPREAKVLRMST------DHTLEEVGKQFDVTRER-------
-------------------