>seq_1
MAPISVNSVKTLRFTQSQIFSKLRCLQSVFFVNAVRLPIVTALMLSLLEEEYGDCLTGFKLVDRRQIKLCSDFEQDEHIGTETCFVCEHETCDKRGWEYL
LECGYSVSALASCFQFRACECRRCSLCWALVKLLMHNIKDNVDWQIQMTSLLLKANVDYKLAQLIRVVIITLKRKWLFNVLDCECAFRPLALLRWALVCE
SEIRRCKRSVVSDSKWLAAWVFKTCFQRSLNKSGIVGAGRLGLLISVNRFDFHSGFKFSTYARWWVMHRMLDMSMSSATAQNFGTDILKIRSVGIGQNVS
NTISIVKANRYRTVSLDQTIGDNCDLHAVTAYDDSAADVKCCEDVARAFKSLKRLTLLSPREERVLRLRGHSLTDFKWSLAKIGFELGLSKERIRQIELL
ASARVRALNERAMLELLCL
>tr|A0A097GZS6|A0A097GZS6_9RHIZ RNA polymerase sigma factor rpoD OS=Candidatus Hodgkinia cicadicola GN=rpoD PE=4 SV=1
----------------------------MFFVNAVRLPVVTTLMLSILEEEYSDCLTSFKLVDRRLIKLCCDFEQNEHTG--DCSVCEHETCDKQSWEYL
LECEYSAGAITSCFQFRVCECRRCLLCWALVKLLVHNLKDNVNWQIRMASLLLKANVDYKFAQLIRVLIAILKRKWLFTALDCKCAVRPLALLRWALVCE
SEIRRYKRSVVSDSRWLAAWIFKTCFQYSLNKSSIVRAGQLGLLISVNRFDFHSGFKFSTYARWWVRHRMLDMSALSATAQTFRTNVLKVRSVGVGQNIS
NTISIVKAERYRMVSLDQALGGNCDLHAVTAYDNTTVNAKCYDGTARAFKFLRRLALLSSREERVLRLRGHSLTDFKRSLAKIGCELGLCKERIRQIELT
ASARVRTLDEAVARKLLGL
>tr|A0A060KRR1|A0A060KRR1_9RHIZ RNA polymerase sigma factor rpoD OS=Candidatus Hodgkinia cicadicola GN=rpoD PE=4 SV=1
-----------MKLAQSQIFSKLRRLQCVFFVNAVRLPTVTALMLSLLEEEYGDCLTGFKLVDRRLIKLCCDFERSEHVGTGDCFVCEHETCDKRSWEYL
LECEYSAGVITSCFQFRVCECRRCSLCWALVKLLMHCLKDSNNWQVQMASLLLKANVDYKLAQLIRVVVTTLKRKWLFSALDCECALRPLALLRWALVCE
SKIRYYKRLVVSDSKWLAAWIFKTCFQYSFNKSSIVRAGRLGLLISVNRFDFYSGFKFSTYARWWVRHRMLDMSTLSAATQTLTTSILKIRSVGTGQSVS
STVSVVKADRYRAVSLDQAIGDNSDLHAVTA-DDAAVSVKCHDGVARAFKFLRRLALLSPREERVLRLRGCSLTGSGRSLAKIGFELGVSKERVRQIELT
AGARVRTLDEAIVPSLLCS
>tr|C6UMV6|C6UMV6_HODCD Putative RNA polymerase sigma factor OS=Hodgkinia cicadicola (strain Dsem) GN=rpoD PE=4 SV=1
----------------------MHVAACACF---VKLPPVAVLARLVASEVWAGSLGGAEVANKRA-----GF------GGSAS-----SGCVASTGAYK
LEKLFGASLRGVCAQFKSCACRHCGLWRALLKSLCCKPGLATRWVA--VSALLKLGLDQKLTQLARALIVVSKFDLGLLGIRCIRKARALMWLATAANVA
NNLKAAKRSLVGSSASVIADVIKAYPSCDAQDPALASAGRDGLMASANRFDLVSGYRFAAYSKWWVKHNVIAHVLAGAKGWA----------------AA
SAKQLAGAAKLKRLSLDYCGGGASLHEAVELKPAARGAQPRFEARCDDYTLISSLMLLAPREERVVRLRGRARAPFSWSLRRIGLDVGLTRERVRQLALS
ASTKLASAAL------SCS
>tr|A0A0M0F1V2|A0A0M0F1V2_9RHIZ RNA polymerase sigma factor rpoD OS=Candidatus Hodgkinia cicadicola GN=rpoD PE=4 SV=1
----MDFKINYSKETETKLYNMICKLQFILFVNIIKSPIIIKFLYLIMEGSHSCVLDVCEILDINSSYD--SFK-------------LNNHCSSWTDNYS
QERSYIGEGNENNSWFKSCKCRTCSLIRLLYKAVLCQRSLRSHWCI--VNILIKLGPDYKVIQLLNILLCFFKQNIDVIRLICLHQKKTLTHLVSVLKTD
SILRRIKRQMFKACSWIPMNISAAYCDYGVKRSTLITIGTTGLLMSINRFNFLSNQYFSAYAKQWVKQKIIQKIIEDNGGLNHI--------------RN
SDAKDNKMVKLKQLSLDYCFDDSDLHETIA--ENEAVEPDVKLDITDVYMTTAKLALLSPTEERSIRLKQLSH--DKLSLSNIGSELGLSKEQVRQLLLS
ANAKFKEINCLDIMAYPCE
>tr|D9Y6Y8|D9Y6Y8_9BURK RNA polymerase sigma factor RpoD OS=Burkholderiales bacterium 1_1_47 GN=rpoD PE=3 SV=1
-----------------ELYQDLKHAYEA---EGYRSPA-----FIKAQDAIQEELLSLRFTANTVERLCTMLK-----T--------------------
----QVEEVRKYESRIYDIVVNRAKMPRELFLKEFLDNETNLAWSQAIA----ESDKPYAVKRKLPEIQH-LQQQLQN--I-QNAVTLPLKDLKQMATGE
AKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMDMPED
KIRKILKIA-KEPISMETPIGDDEDSHLGDFLEDFGTVAP-AEAAQQSSITKEVLDSLTPREAKVLRMRGI-EMSTDHTLEEVGRQFDVTRERIRQIEAK
ALRKLRHPSRSDKL-----
>tr|M1T5I6|M1T5I6_9PROT RNA polymerase sigma factor RpoD OS=beta proteobacterium CB GN=rpoD PE=3 SV=1
-----------------TQADKMRRAFDK---EGYNCPA-----YIKAQEAIRGELLGFRLTAKSVEKLCDTMR-----S--------------------
----QVDQVWKLERGIVSLLVDKVGVNRGEVLKDFPKMSMNLEWTTKLL----KENKPYTLQRNVPAIQE-LQQKLID--I-QTRVVLPLPELKQMIAGE
KRAREAKREMTVANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEIPED
KIRKIMKIA-KEPISMETPIGDDEDSHLGDFIEDGNTLAP-AEAALHDSVVKDVLDSLTPREAKVLRMRGV-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKMRHPSRSDKL-----
>tr|S5R1F3|S5R1F3_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Profftella armatura GN=rpoD PE=3 SV=1
-----------------FHFDKMRKAFEK---EGYNSES-----YIKAHNNISNEMLGIRFTAKSIEKLCDTLR-----N--------------------
----QINQVTQIEKQILEIVVNKCGMPRLHFIKVFPENEINLNWVDNET----KIQHDYNLCRNIPSIKE-LQQKLIN--L-QTDIVLPLNDLRKMIAGE
MKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKISRIGMEMPEE
KIRKIMKIA-KEPVSMESPVGDDEDSHLGDFIEDENMLAP-SDAALNASVVKDILNSLTPRESKVLRMRGI-EMSSDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRYYKL-----
>tr|A0A0Q5H4C1|A0A0Q5H4C1_9BURK RNA polymerase subunit sigma-70 OS=Massilia sp. Leaf139 GN=ASF77_18450 PE=4 SV=1
-----------------QQFDKMRKAYEK---DGYNSKA-----YVKAQEAISDELLGIRFTAKVVEKLCDTLR-----G--------------------
----QVDEVRHIEKQILDVAVNRCGMPRAHFIKVFPGNETNLEWVDGEV----NAGHAYSLGRNIPTIKE-LQQRLID--L-QARVVLPLPDLRQMAAGE
MKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEMPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDNNTLAP-SDAALHASVVKDVLDSLTPREAKVLRMRGI-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSDKL-----
>tr|G3A077|G3A077_9RALS RNA polymerase sigma factor RpoD OS=Ralstonia syzygii R24 GN=rpoD PE=3 SV=1
-----------------DQFDKMRRAFEK---EGYKSKP-----YLKAQESIQNELMAIRFTARTVERLCDTLR-----G--------------------
----QVDEVRKLERAILNIVVDKCGMPRGDFVSRFPGNETNLRWIDSVV----ADGKPYSVERNIPAVHE-LQQKLID--L-QARVVLPLTELKKMSEGE
RRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEMPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDTNTLAP-AEAALHGSVVKDVLDSLTPREAKVLRMRGI-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSDKL-----
>tr|A0A0Q5ZAW0|A0A0Q5ZAW0_9BURK RNA polymerase subunit sigma OS=Ramlibacter sp. Leaf400 GN=ASG30_10580 PE=4 SV=1
-----------------ELFEKVHKVYDK---EGYGTPS-----YMKCQKALSEELMTIRFTAKTIEKLCDMVR-----G--------------------
----QVDDVRKKERELRRIIVDKCGMPQETFIKEFPPNLLNLKWVEKQA----AAGKPWSIARNIPPIQE-LQQKLMD--L-QSRVVVPLVELKRMNEGE
ASSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEIPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDTGNTAP-IEAAMQAGVVKDILDSLTPREAKVLRMRGI-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLKHPSRSDKL-----
>tr|I4MUE0|I4MUE0_9BURK RNA polymerase sigma factor RpoD OS=Hydrogenophaga sp. PBC GN=rpoD PE=3 SV=1
-----------------GMFEKLHKTYDK---EGYGGAV-----YVKTQQAITEKLMTIRFTAKAIEKLCSTVR-----G--------------------
----QVDEIRKKERELRRIIVDKCGMPQETFIKDFPPNLLNLKWVEKQA----AAGKPWSIERNIPPVQE-LQQGLID--I-QNSVVVPIDHLKRMNNGE
ASSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMEMPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDTTNTAP-IEAAMQAGVVKEILDSLTPREAKVLRMRGI-EMSNDHTLEEVGKQFDVTRERIRQIESK
AVRKLKHPSRSDKL-----
>tr|C3X4K6|C3X4K6_OXAFO RNA polymerase sigma factor RpoD OS=Oxalobacter formigenes HOxBLS GN=rpoD PE=3 SV=1
-----------------TYFKEMQQAFEK---DGYNSPA-----YVKAHNSISDELLGMRFTARFIEKLCDTLR-----T--------------------
----QMDDVRQIEREILNVAVNKCGVPRAHFIKTFPGNETNMEWVDEEV----HAGHPYSLSRNVPMIKE-LQQNLVD--I-EKRIGMPLADLRKMVAGE
MRARKAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKMNRIGMDMPED
KIRKIMKIA-KEPISMETPIGDDDDSHLGDFIEDNNTLAP-ADAALHASVVKDVLDSLTPREAKVLRMRGV-EMSTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSDKL-----
>tr|A0A0Q6WIJ7|A0A0Q6WIJ7_9BURK RNA polymerase subunit sigma-70 OS=Massilia sp. Root351 GN=ASD15_06885 PE=4 SV=1
-----------------VQFEKMRKAA-----GGYGSPA-----YNKAQEIISAELLGIRFTAKVVEKLCDTLR-----G--------------------
----QMEQVRSIERAVLELCVNRCGMPRAHFIKVFPGNETDLDWVDGEV----DAGYPYSLGRNVPAVKE-LQSKMID--L-QARVALPLADLRQMAAGE
KRARTAKREMTVANLRLVISIAKKYINRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRSIADMARTIRVPETINKMNRIGMEMPEN
KVREIMKIA-KEPISMETPMGEDGDSQLGDFIEDNTTLAP-LDAALHASVIKEVLDSLTPREAKVLRMRGV-EMSNDHTLEEVGKQFDVTRERIRQIEAK
AMSKLRQPSRSDKL-----
>tr|A0A0K1P8V7|A0A0K1P8V7_9DELT RNA polymerase sigma factor RpoD OS=Vulgatibacter incomptus GN=rpoD PE=3 SV=1
-----------------KLDLECRKI---DEPSDAKARA-----LRVLQDEMAEVLEELKLNKKQIDRVVDDFK-----R--------------------
----IIKTVDEAELELREV-EQRVGMAASELLELAKSMRETKGP-SRAA----KLGLTEDLIRNALTEAR-LEEKLER--K-TGGVERCVAELRELVLGE
RRADRAKQELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPETINKLIRTGMELPLD
KVRKVLKIA-KEPISLETPIGEEEDSHLGDFIEDKAIVSP-ADAVINMNQTRKVLATLTPREEKVLRMRGI-GEKSDHTLEEVGQDFEVTRERIRQIEAK
ALRKLRHPSRSKRL-----
>tr|K2A562|K2A562_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
-----------------LLSTEYNGL---DKLRDETQRA-----YEEVQGKMIACLHDIGFNRTTMNSFVEGLK-----R--------------------
----VLEEIGGLESAIDKH-LGKLNLSSDELLVVKKISSNSSYLQRKIT----KTGLAKDILRKVET-----------------KYETKLDDIKELKYAE
QMVDKAKGDLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPETINRLVRTGMEMPIE
KVRKVLKIA-KEPISLETPIGEEEDSYLGDFIEDKIVMSP-NDAAQNFNETKEVLETLTPREEKVLRMRGI-HEKSDHTLEEVGRDFSVTRERIRQIEAK
ALRKLRHPSRAKKL-----
>tr|B8JDL7|B8JDL7_ANAD2 RNA polymerase sigma factor RpoD OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rpoD PE=3 SV=1
-----------------KLERDVAKV---RELSEVKRKE-----LKAIEAEMMENLEAIQLNKKQIDRIVLRLK-----S--------------------
----FIKRVEEAEREFFDC-ERRTGVPVKDLRRLLRETREDEAERKKLA----KLRCALDLILRVQE-----------------EAEVPVEELRMIGDGE
RKAERAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPETINKLIRTGMELPLD
KVRKVLKIA-KEPISLETPIGEEEDSHLGDFIEDKSLVSP-SDAVINMNQTRKVLATLTPREEKVLRMRGI-GEKSDHTLEEVGQDFEVTRERIRQIEAK
ALRKLRHPSRSKRL-----
>tr|G2KPS9|G2KPS9_MICAA RNA polymerase sigma factor RpoD OS=Micavibrio aeruginosavorus (strain ARL-13) GN=rpoD PE=3 SV=1
-----------------KTYKKMQKVQQERFPPAATNKK-----YDDLKAQMVELMNEVRLNNARIEQLVGRLY-----K--------------------
----MNREVVSLEGRLMRLAV-DCGVKREDFLQNYYGSELDPNWLAKVA----KTGKGWAAEKHVAEVGE-IRTQIVT--V-TDDAGVPLGEFRTVQKGE
REAARAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPETINKLVRTGLHMPLD
KVRKVLKIA-KEPVSLETPIGDEEDSTLGDFIEDKNALLP-VDAAIHSNTTTRVLATLTPREERVLRMRGI-GMNTDHTLEEVGQQFNVTRERIRQIEAK
ALRKLKHPSRSRKL-----
>tr|A0A0R2N0Y3|A0A0R2N0Y3_9LACO Uncharacterized protein OS=Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 GN=IV58_GL001146 PE=4 SV=1
--------------------------GVIFFLRVFR--IDTAADLSLMEKGSKGSVQVFRLYDRYENET--SAEISGMTP-----VISDNRFQYLKDELK
VDGVFIAEDKGSDLQER------LDAAKALYGEFHWGGSVKVQALKEIG---YKLGVDFDMAQLDYDAIF---DEAEA--V-CPAMKGMLKDIRNIQAAR
PDAQDASLRIFDMVLRSCVKVALAYKDNGMEFEDAFQEACIGAWTAIWKHSDSVEGLFPSYASMWMSQVMHRDLPYLHQTCYVSEQINQYLNIGTDWPEE
RITQVLYIL-LTPESIETLQEETDG---NAFVSDENV----EDDVISRQLTELALRGLSDRERSVIEKRGL-ADGNEHTLEEIGQEMSVTRERVRQIESK
AKKKIAAKF----------
>tr|A0A0B2JUP6|A0A0B2JUP6_9FIRM RNA polymerase sigma factor OS=Anaerovibrio lipolyticus GN=NZ47_07020 PE=3 SV=1
--------------------------GILLFVRVFE--VNQALPQFYLEKGIRGSSQVLKLYDEYGSET--SFTVDEIRP-----VISDNKFSYLKDEMK
VEGAFIALERGNDLQER------VIADRQIQGTHRRWENRHLQW--------LESDDDFDMAQLDYEAIY---QEVLD--I-CPGMQGIIDYVRNIQAAR
DPKGAAFARIFDMSIRSAVKSALHSNQYRINVEDAFQEACIGVITAIRKHSDTVEGLFPSYVSMWMRQVLNRNLAPYDYNFRIPTRISQVLKVDSDCDVD
EAKRTAGIL-YPAESMEEILKNPEN---ESLFVDNSQ----LNE-INEEMVHDALSILTQREREIILNRGF-GSYKESTLEDIGNMFGITRERIRQIEAK
AMRKMLDYL----------