>seq_1
MATKATEREETEAAPEQQTDGPLLDLTDASVKRMIKLAKKRGYVTYDELNEVLPQEEFTSEQIEDVLGQLSELGVNVVEAEEADDNQAEGAAAEGGGDDE
EASEGTEVAEVAPNRPAVLRTETTKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVDGRVLLRDIID
LEATYAGPDGRAGPAEGEVEAEGDGPEGEVAAPEGDGDEDDLENNVSLSAMEAELKPRVLETFDAIAENYRKLRQVQAQQAETRLQGAGANEGQSRQYAE
LKSRIVADVKSLSLNANRIEALVEQLYDINKRLISQEGRLMRLAESHGVARDEFLRHYQGQELDPHWVERVGKLGGKGWKNFTERGQDGIKTLREQIMSL
ASETGLEIQEYRKIVHMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
>seq_2
MASKAKNTRPSDDA-------PLIDLNEASIKKMIAKAKRKGYVTYDELNEALPSDQMSADQIEDIQTAISDMGVQIVESDEEQEDDPEEIAPTG--SES
QAEDKQNV----------PEKKKSVAGEGRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFHAIIMWSEALNNEEMQLREILD
LDAMLSKPVEKMEEENGEISEETAIRDDDEDDSEDDDDEEEEDNTMSLAQMEAALKPDALERFARITDLFKKFENLQAERVDVLGAGEAFSKAKENRYES
LREELTAEVESVQFHATKIEYLVDNLYAFNRRLTALGGQMLRLAERHKVKRIDFLQSYIGNEMDETWLQERAKK-DKKWAAFADKEADAVERIRAEIADI
ASQTGMSLNEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ
>seq_3
MKDLQT--------------------DKELIRTLVSKGIKQGFVTFNDINDVFSDYVLSADNIDETISLLQDSGINVLEQSDEEASSIVESGRLKDGIDD
DDVS--------------D--TSISWDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKKIKSEKVNMLRSLVESPMVLRTFMSWRDDLVNEQIMLRDLID
LDANYRYFPEK-SDVDDE-----S-VDKD---MDEDDTDDISDDDDDDLEMESALLPKVVSILDAVIESAEKILELKKQHKGKLT------KDIEKQYND
LHDNIWEMIYQIKLSNSAVLSITQQIYSLNKSIAAEEAKIISLAESYGIPRKEFLDAYNTN----SVLEKK-GT-SPAWNNMIEKEETNIVSMYNKIKLL
SGEN--SLAEFKSLVTKIQKHERAATQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQA
RTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVRPEDAAVLADLREITTKV
LSTLTPKEERILRMRFGIGKGKDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPSRARKLRGF--F
>seq_4
MSAINNEED-----------------KKKIIRDLVTKSIKGGFITFDDINEKLSDENFSSDFIDDTVSLLQDSGINILESSEDEDAPSNNN---DSKLDD
DDT---------------L--SNAATTLIQNDDPVRVYLQDMSSVKLLSRTDEITIAKKIESEKHNMLRAIIETSATLKMIKAWRDDLSSGSLSLREIID
LDAIYNSFNAMPEDVKENIEDIDG-SENDYKTDNKKNNDEQESGNEDILEMENDLLPKIMVALDEIITLANKALTLKKNSS------------SELTYKD
LYNQIWSTALQIKLSDTATAKITQKLYNINRSIMLEEANLISEAKKYEIDRESFYKVYDNVLKNLSFLKDE--V-KNKFAKFINDNFEYITNTLNNIKQY
VQED--NVQEFKELIKKIQKHEREISEAKQEMIKANLRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRAIPEQS
KVVKIPVHMVEIISKINRTLRKLTHEMEREPTLEELSIELGMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSKPEDAAILADLRGITTNV
LATLTPKEERILRMRFGLGKGKEHTLEEVGRIFNVTRERIRQIEAKALRKLKHPSRARKLRGF--F
>seq_5
MTKGYSSKF------------------HQVVKALITKGVKRGFVTYGELSDSFSDEDENLNCIEEAISKLEESGIGILEKDEEE---LSEEVK---EEDE
EEDEA-------------------ADILGHTDDPVRLYLREMSYVKLLSRDDEVEIAKAIVAEKFESLSAVLLFPSVLKSIVNLGTKLRECTISLREVIE
SDSGLKSLTEETG-K-----------GDDLFE-GMDGK-PEEGNQM-S---DEELMEKVLDIFGELETIITS--ALDKAKEGQMV----DEVILDPEYRE
LHTLAVNHLNQVKLNPKLLAEFFENTRKKNELILEKKKVLLTFLEEHGLDRTVLIKGK-VHILDAVVLSELLKE-H-----NICDTHFSLEEFLSPIREL
EKNEGMDYRSISFLTRKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTYATWWCRQAITRAIADCG
SIVRKPVHIHETANKVMRTRRRLYNLNGREPTVEEIANLLKISPDKVKKSLKVNQDPISLESPVGDDSNSSFGDFIEDKNAVSQVDVVLSKNLRKVLDEA
LAMLSPREEKILRYRFGLCNGTNLTLEQVGILYNVTRERIRQIESKSLRKMRSPSRSIKLRTFLKY
>seq_10
MTAKKPASAAPARMKVSRLTEEEVAKRRQELKTLIKMGKTRGFLTHQEINDHLPEKLVDNEILEAIVSMLNDMGIAVYEQAPDATLLINGSNT-ATATDE
EAEEAAEAA---------L--STVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEGGLQAMMLAISASPTTIAEILAMADKIAAGEMQISEVVD
GFVSDDE-DDYVA-------------EEDFDEFDEDDDDDGAGGSKALTKKLEELKKQALEKFDLLRSHFDRMRKAYEK-----------DGYKSPAYNK
AQESISDDLMTIRFTVKTIEKLCQILRAQVDDVRRYEREIRKIVDKCGMPQEQFIKTFPPNVLNLKWAEKEAAA-GKPYSAVLGRNLPAVQELQQKLIDL
QGRAVVPLDDLKEINRHMNAGEKASRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDAPTLAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNNVAPVDAAMQAGLREVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSRSDKLRTYLNL
>seq_11
MCARKTQKSDTTRVKISKLSEEDLAKRRQRLKLLIKLGKTRGYLTHGEISDHLPDKLIDAETLEVVISMLNDMGVAVYEHTPDETLLLTQNGP-TASTEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEGGLMAMMAAISDSPASIAEILQLGEDIRANKVVITSIID
GFTNPNE-DDYVA-------------EEDYDEFDLEEDDDG--GTKALTKKLEELRAEALVRFDRLRAQHEQLGAIHAE-----------QGYGTPDYVR
VQKTLSEELMSVRFTARCIEKLCDMVRAQVEKIRQKERELRKIVDRCGYPHTAFIAEFSGRLLDKQWIERQAAA-GKPWSASLARHIPPVQELQQALIDL
QSQVVIPLDQLKDINRRMIEGESSSRAAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRFSRQHLQEHGHEPDASQLAERMDIPEDKIRKIMKIAKEPVSMESPIGDDEDSHLGDFIEDSANTTPVDAAFQAGLRDVMKDV
LDTLAPREAKVLRMRYGIEMTNDHTLEEVGKQFDVTRERIRQIEAKAVRKLKHPSRSDKLRSFTNL
>seq_12
MKFINKKTKI----KNKKNSREEIENLRKKFKILIKLGKERGYLTFSEINDFLPEDIIDHEIIESIIKTFRYMDISVSEHVLDETLMLSN-----ITSDD
DVEEATEAA---------L--STVDSDFGRTKDPIKMYMREMGSVELLTRDGEIEIAKRIEEGLKDMIHAISSCPTTIMEILIAADKISKNEIKIDEIVD
GLIDKNFSNNRVI-------------KGNKNNNEEKILIESS-SADLSTEQLEKLKYESLIKFSNISFHFDKMRKAFEK-----------EGYNSESYIK
AHNNISNEMLGIRFTAKSIEKLCDTLRNQINQVTQIEKQILEIVNKCGMPRLHFIKVFPENEINLNWVDNETKI-QHDYNLILCRNIPSIKELQQKLINL
QTDIVLPLNDLRDINRKMIAGEMKARKAKREMTEANLRLVISIAKKYTDRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKISRISRQILQETGSEPDPSVIAIKMEMPEEKIRKIMKIAKEPVSMESPVGDDEDSHLGDFIEDENMLAPSDAALNASMRSVVKDI
LNSLTPRESKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRYYKLKIFLKN
>seq_18
MNNFIL-K-------------------KNQLKILLKKS-LKDFKFHMYYNYFLIFKKIDIDDLDEILKIIKSLKIKIVEYIPEFISLNIESKKIK----R
DI----------------------------SNNKVKKYLKIKKYLNILSKHSEIFV--------------------------------PSNKKSLKKFVN
K-----------------IKSN----ESFTKNLKKR--KKK-------YSDH----------YF---------------FKNI------------NKSKI
LLESLKNKFIIFKVTLRMLDDLYKIIDLKFKPLNNLRYEIYDSSNISNISYIKFNFFFLKNGNNLKWIMNLLDFS-KFGNSLKIYYKNYLKKKFLEIRII
EKKYSISIKKFFKMFNVVELYKLKIDLIRKKIITVKLKKLKNFFKIYNENNKFDDDASQEGVLGFLKGINNYNLFSSVKFENFLIYNIKRALFKYKYITN
KIIKLPNYIISIIKKINNFIKHHKNIYNIDPDIEKISENLSMGEKKIENIINFYKNPISIEKLIDDNN--SLIDVINNRNFNFDE-KIFDDDLENYLNEL
IMNLNNRSINILNMRFGLNMSRRYTLAEVGEIYNLSRERIRQIQNFVLKKVKDSSRTKKLLNFFDK
>seq_19
MEQNPQS----------------------QLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDDDLMLAENTA-----DE
DAAEAAAQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT
GFVDPNAED-LAP-TATHVGSELS--QEDLDD-DEDEDEEDG-DDDSA-DDDNSIDPLAREKFAELRAQYVVTRDTIKA-----------KGRSHATAQE
EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLVEQCKMPKKNFITLFTGNETSDTWFNAAIAM-NKPWSEKLHDVSEEVHRALQKLQQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDV
LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
>seq_20
MANERPAQQS-------------------DIKQLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIIGMINGMGIDVHEVAPDETLLLNDGNTGNREVDD
TAAEEAAAA---------L--TALDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQAALGAFPLAVETLLEDYEQHKEGKKRLAEIVV
GFNDLIEEPA-PP-V--AVSDDDS-A-TDADA-DEDDDEDVD-TAEED-AGPTGPDPEVARRMEVLATEYAKFKKAHAK-----------NGAEHKLVTK
LRNDIAEVFVTLKLPLPLTDVLVRKLRDTMAQVKDHERRVLHLTHVARMPRKDFIRSWEGNQTNVAWVDDALKR-KQKWSSALRDVKDQIIAEQEATVAV
EQATYLSLAELKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIENTTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRPPSRSEQLRSFLID
>seq_21
MVESRVHKKS--LNHIKQNQQSTAEQYSEQIEQLMELGRTQGYLTFAEINDLLPEDAIDPEYYDKLLQTLNDAGIPVLDEAPEDDMMLSDTIP-----DE
DAVEEATQI---------L--SNVESEIGRTTDPVRMYMREMGTVDLLTREDEISIAKRIEGGIDEVQTSIAAYPEALNGLLKNYDDVEKGNFRLTDLIT
GFVDPNAIEEHNG-LDEDFSDEDD-EEESSNA-DVEDNESES-TSDSS-DSDNSIDPVAREKFQQLREQHSKTLAVIEK-----------HGRSGKRAQD
QIALLGEIFKQFRLVPKQFDLLVLSMKEMMKRVRYQERQLQKIVDIAGMPKDDFEKIITTNGSNSEWVAKALKS-SKPWAKRLIKYEDRIYEALNNLAIT
EENTKLTITQMRDICDAVARGEQKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQLLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDE
>seq_22
MDQNPQS----------------------QLKLLVTHGKEQGYLTYAEVNDHLPEDIIDSDQIADIIQMINDMGIPVMEEAPDDDLMLAENTN---DTDE
DAVEAVAQV---------L--SNVESEIGRTTDPIRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVSEYPEAINYLLEQYTYVESGKTRLSDLII
GFIDPNAEN-IIP-TATHIGSELS-------T-EEQI--NEG-EDENT-EDDNTIDPLAKQKFLALKNQHKKINLIIKN-----------NKNNYINIKK
EIIKLSEVFKQFRLVPKQFNFLVNNMRTVMDRIRIQERIIMKLIEKCKMPKKNFIKFFSTHEINSSSFEKIIKT-EKPWSEKLKNVEEDIKKSLKKLYQI
EQETNLSITQVKDINRRMSIGEEKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLHRISRQMLQEIGREPMPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDENSHLGDFIEDTNLELPLDSATSESLRCATQDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRNFLDD
>seq_23
MKKKPKS----------------------QLKLLVSHGKEQGYLTYSEVHDHLPNDIVDADQIKNIIQMIKDLGIQIVEEVREEELIINEAPT---DTDE
DTVEAATQV---------L--SNVETEIGRTTDPVRMYMREMGTVELLTREGEIGIAKRIEEGINQVQSSVSEYPTSILYLLEQYHHVKLGNIKLSELII
GFIDKKKPKKKIF-TEEVI----T--KKLYNN-KKKSLNAEK-NEDTI-DDYNHIDPLAKKKFSQLKKQYYITNHIIQN-----------KPRNHKDSIN
AIHKLSKIFKQFRLAPKQFDYLVTNMRNEIHKITLQEKKIMNLVHTCKIPKKKFLKFFKKHKKNYKNFYSVIKK-KKSWLYKLKFIKKEIIKRIKKLLII
EKKTKLKITQIKDINKRIILGEEKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELSEKMLISEEKIRKVLKIAKEPISMETPIGEDDDTHLGDFIEDTNLELPLESATSESLKTITNDV
LSGLTDREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLNS
>tr|A0A0Q8R094|A0A0Q8R094_9BURK RNA polymerase subunit sigma-70 OS=Noviherbaspirillum sp. Root189 GN=ASE07_17860 PE=4 SV=1
------------------ASEEELEQRRQKLKTLIKLGKDRGFLTYSEINDHLPENIVDPEAIEGIIGTFNDMGIAVYEQAPDAELLLSDNVATVSNDDD
DAEAAAEAA---------L--STVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPTTIAEILAAADRIEKEEIKVDEIVD
GLVDPNASDEVAAPPVAAAAEEDEEDEDEEDEEEEEEDNSGGGAAGFSAEQLEQLKRDSLGKFEEISNQFDKMRKAYEK-----------EGYNSKPYVK
AQETISNELLSIRFTAKFVEKLCDTLRGQVDEVRHIEKQILDVVNRCGMPRAHFIKVFPGNETNLDWIDGEVIG-NHAYSAVLGRNVPTIKELQQKLIDL
QARVVLPLPDLRNINKKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRGVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|R5E5I1|R5E5I1_9BURK RNA polymerase sigma factor RpoD OS=Parasutterella excrementihominis CAG:233 GN=rpoD PE=3 SV=1
------------------HEEDDKETRLNKLKALIRMGKERGYLTYSEVNDHMPENIVDPDQIDQIISTLADLGIQVYEQAPTADLLIGDSVPTASD--D
AAEEEAEAA---------L--ATVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVHAISGCPTTIVAILEDAEKVRNGTMQIDQIVD
GLVDGLDEEASE-------------------QVAEDDESTDIGASGMTAGQIDELKTVVLAKLDHCKELYQDLKHAYEA-----------EGYRSPAFIK
AQDAIQEELLSLRFTANTVERLCTMLKTQVEEVRKYESRIYDIVNRAKMPRELFLKEFLDNETNLAWSQAIAES-DKPYAIDVKRKLPEIQHLQQQLQNI
QNAVTLPLKDLKDVYNQMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGVEPDPAELAEKMDMPEDKIRKILKIAKEPISMETPIGDDEDSHLGDFLEDFGTVAPAEAAQQSSLTEITKEV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFME-
>tr|F1VZ24|F1VZ24_9BURK RNA polymerase sigma factor RpoD OS=Oxalobacteraceae bacterium IMCC9480 GN=rpoD PE=3 SV=1
------------------ATEEELERRRQKLKTLIKLGKDRGFLTYAEINDHLPENIVDPEAIEGIIGTFNDMGIAVYEHAPDAEMLLTDNVATVASD-D
EAEAAAEAA---------L--STVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPTTISEILAAAERITNGETKIDEIVD
GLVDMLVIEVVVV--PPPKVSEDDEEEAEEEESGAEEETNASGAAGFTAEQIEQLKRESLVKFQAISTQFDKMRKAYEK-----------EGYNSKPYVK
AQEAISSELLAIRFTAKVVEKLCDTLRGQVEEVRHIERQILDVVNKCRMPRSHFIKVFPGNETNLDWVDGEVSG-NHPYSVILGRNVPTVKELQQKLLDL
QSRVVLPLPDLRAINRRMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRGVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDRLKSFLE-
>tr|M1T5I6|M1T5I6_9PROT RNA polymerase sigma factor RpoD OS=beta proteobacterium CB GN=rpoD PE=3 SV=1
------------------GSEEQQELRRTRLKTLIKMGKSKGYLTHGEMNDVMSDELSDADALETLISLLNDINITVYEQAPDAELLLNENASATTSE-E
EAEEEAEAA---------L--ATVDSEFGRTTDPVRMYMREMGTVDLLTREGEIVIAKKIEAGLKDMVMALAACPVTIGEILTNVDKIASGEMEIDQFVD
GLVDPNAEDIKLGPEEPEVP-----EESDEEGVEDEGGGGGGGAATANAKQLEELKQISLEKFAIVRTQADKMRRAFDK-----------EGYNCPAYIK
AQEAIRGELLGFRLTAKSVEKLCDTMRSQVDQVWKLERGIVSLVDKVGVNRGEVLKDFPKMSMNLEWTTKLLKE-NKPYTALLQRNVPAIQELQQKLIDI
QTRVVLPLPELKEVNKQMIAGEKRAREAKREMTVANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGHEPDAATLALKMEIPEDKIRKIMKIAKEPISMETPIGDDEDSHLGDFIEDGNTLAPAEAALHDSMRDVVKDV
LDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKMRHPSRSDKLKTFLE-
>tr|W0V2Q9|W0V2Q9_9BURK RNA polymerase sigma factor RpoD OS=Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 GN=rpoD PE=3 SV=1
------------------ATEEELERRRQKLKTLIKFGKERGFLTYAEINDHLPENIVDPEAIEGIIGTFNDMGIAVYEHAPDAELLLTDNVATVTSD-D
EAEAAAEAA---------L--STVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPVTIAEIIAAADRIANDEIKIDEVVD
GLVDQNEEAAPVV--VSAAEEEED-EEEDEEEEEEEEESSPSGAAGFSAEQLETLKRSALEKFAVISQQFDKMRRAFEK-----------EGYNSKPYAK
AQESISQELLGIRFTAKIVEKLCDTLRGQVDEVRHIEKQILDVVNKCGMPRAHFIKVFPGNETNLNWVDGEVDA-GHAYSAVLGRNIPTVKELQQRLIDL
QARVVLPLPDLRNINRQMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPSDAALHASMRGVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALCKLRHPSRSDKLKSFLE-
>tr|K9DFZ8|K9DFZ8_9BURK RNA polymerase sigma factor RpoD OS=Massilia timonae CCUG 45783 GN=rpoD PE=3 SV=1
------------------ASEEELELRRNKLKALIKSGKERGFLTYSEINDHLPENIVDPEAIEGIIGTFNDMGIAVYEHAPDAELLLSDNVPNVTSD-D
EAEAAAEAA---------L--STVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPVTIAEIIDAANKIERDEIKIDEIVD
GMVDPEEGEETSPSAVAPTTDSDEDEDAEEEEEEEEASTGTGAAAGYSAEQLEALKAAALGKFDEIGQQFDKMRKAFEK-----------DGYNSKAYVK
AQEAISNELLGIRFTAKVVEKLCDTLRGQVDEVRHIEKQILDVVNRCGMPRAHFIKVFPGNETNLEWVDGEVDA-GHAYSAILGRNIPTIKELQQRLIDL
QARVVLPLPDLRNINRQMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPSDAALHASMRGVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|C3X4K6|C3X4K6_OXAFO RNA polymerase sigma factor RpoD OS=Oxalobacter formigenes HOxBLS GN=rpoD PE=3 SV=1
------------------ATEEELERRRERLKMLIKLGKERSFLTYAEINDHLPDNVIDPDAIEGIISTFNDMGISVYEHAPDAELLLTDNVVTVTSD-E
EAEAAAEAA---------L--STVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGLKDMIQAISSCPTTILEIIGQAEKIRNDEIRIDEVVD
GLADEAGESQVLAAA--SDDQDESDDGEEAEEEESDGGSAGGAAAGFSAEQLEKLKEDALARFALIETYFKEMQQAFEK-----------DGYNSPAYVK
AHNSISDELLGMRFTARFIEKLCDTLRTQMDDVRQIEREILNVVNKCGVPRAHFIKTFPGNETNMEWVDEEVHA-GHPYSEILSRNVPMIKELQQNLVDI
EKRIGMPLADLREINRKMVAGEMRARKAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAVKMDMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVVKDV
LDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|C3XAR3|C3XAR3_OXAFO RNA polymerase sigma factor RpoD OS=Oxalobacter formigenes OXCC13 GN=rpoD PE=3 SV=1
------------------ASMEELERRRERLMILIKLGKERSFLTYAEINDHLPDNVIDPDAIEGIISTFNDMGISVYEQAPDAELLLTDNVVTVTSD-E
EAEAAAEAA---------L--STVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGLRDMISAISSCPTTILEIIDQAEKIRADEVKIDEVVD
GLADDEEGSENAALNASASSDEDSD--SDDEEDDEESGSAGGAAAGFSAEQLEKLKDEALGKFAVIGAHFKEMQQSFEK-----------DGYNSPAYLQ
AHESISAELLTMRFTARFIEKLCDTLRAQMDEVRQIEREILNVVNKCGVPRAHFIKTFPGNETDLTWIDEEVEA-DHPYSAILERNVPMVKELQQKLVDI
QNRIGMPLADLREINRKMVAGEMRARKAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAVKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPSDAALHASMRNVVKDV
LDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|A0A0Q6WIJ7|A0A0Q6WIJ7_9BURK RNA polymerase subunit sigma-70 OS=Massilia sp. Root351 GN=ASD15_06885 PE=4 SV=1
------------------VTAEDLERRRLQIKNLINMGKDRGFLTYAEINDQLPENIIDPEAIEGIIATFNDMGIAVYERAPDAELLLTDNVAAVTSD-D
EVEAAAATA---------L--STVDSDFGRTTDPVRMYMREMGAVALLTREGEIEIAKRIEGGLKDMIQAISACPTTIAEIIALAKKIENDEAKVDEVVD
GFVDLNEASNAPAPAPAAANAH---DEEEEEEVEEEDGDANGGAAGFSTEQLVQLKKGALEKFEVIEVQFEKMRKAA-------------GGYGSPAYNK
AQEIISAELLGIRFTAKVVEKLCDTLRGQMEQVRSIERAVLELVNRCGMPRAHFIKVFPGNETDLDWVDGEVDA-GYPYSTVLGRNVPAVKELQSKMIDL
QARVALPLADLRKINKQMAAGEKRARTAKREMTVANLRLVISIAKKYINRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRSIADMA
RTIRVPVHMIETINKMNRISRQIMQETGSEPDLATLAVKMEMPENKVREIMKIAKEPISMETPMGEDGDSQLGDFIEDNTTLAPLDAALHASMRNVIKEV
LDSLTPREAKVLRMRYGVEMSNDHTLEEVGKQFDVTRERIRQIEAKAMSKLRQPSRSDKLKTFLT-
>tr|D8J051|D8J051_HERSS RNA polymerase sigma factor RpoD OS=Herbaspirillum seropedicae (strain SmR1) GN=rpoD PE=3 SV=1
------------------ASEEELERRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAELLLSDNVANVASD-D
DAEAAAEAA---------L--STVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVD
GLVDPNESEQQVEAAS---SDSDEDEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFEK-----------EGYNSKPYVK
AQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVVNKCNMPRAHFIKVFPGNEVNLDWVDGEVAA-NHDYSAVLSRNVPAIKELQQKLIDL
QARVVLPLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|A0A0K1P8V7|A0A0K1P8V7_9DELT RNA polymerase sigma factor RpoD OS=Vulgatibacter incomptus GN=rpoD PE=3 SV=1
---------------------EGRPGERKEIKALIEMGREKGFLTYEEVSDSLPADMVSSDQIDDVMSMFGEHEIPVVDAAKVGSGGMGSAGKPTLAEPE
GDKEKEKEE---------E--EDEDAAFTKSNDPVRMYLRKMGSVSLLTREGEVEIAKRIEEGEKAILRAVLSSPMAIATIVELGDKLARGKIRVRDVVK
DAPEQQSEQESESESET--------DEET----------PAVARSG-----EAAKTAQVIKNIERIEKLDLECRKI---DEQLE--RSKPSDAKARALRV
LQDEMAEVLEELKLNKKQIDRVVDDFKRIIKTVDEAELELREVEQRVGMAASELLELAKSMRETKGP-SRAAKL-GLTEDEELIRNALTEARLEEKLERK
TGGVERCVAELRQTFEELVLGERRADRAKQELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKAIVSPADAVINMNLAEQTRKV
LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLKSFVD-
>tr|K2A562|K2A562_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
---------------------KTELDIEERLQQMLEVGRERGFLTYEELNINIPENVTNANRLDEILCLIEEVNIQIVEDPSDFKEKIKKVSVESTADAP
FTSSSAPQK---------M--FTTMEGAGSSNDPVRMYLRKMGSVSLLTREGEVEVAKRIEHWEHKVFEIILASSLVRNEIFKIGDRIKKDEIKIFDVIK
ELDETESKAAEDQQKI-----------------------------------YKAKTHKLLQKVQ---LLSTEYNGL---DKKVH--NKNLRDETQRAYEE
VQGKMIACLHDIGFNRTTMNSFVEGLKRVLEEIGGLESAIDKHLGKLNLSSDELLVVKKISSNSSYLQRKITKT-GLAKDLDILRKVET-----------
--KYETKLDDIKKSYRELKYAEQMVDKAKGDLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINRLVRTTRQLVQELGREPSPEEIAYKMEMPIEKVRKVLKIAKEPISLETPIGEEEDSYLGDFIEDKIVMSPNDAAQNFNLSDETKEV
LETLTPREEKVLRMRFGIHEKSDHTLEEVGRDFSVTRERIRQIEAKALRKLRHPSRAKKLRSFVD-
>tr|Q2INW6|Q2INW6_ANADE RNA polymerase sigma factor RpoD OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rpoD PE=3 SV=1
------------------DLDMSDITERSEVKELMARGREKGFLTYDEVNDALPSDI-GSDQIDDVMSMFGEHDIEVVDGAEKKM---KL--PDKPPEPE
AKAESEEEK---------E--EEDDAGYGKSNDPVRMYLRKMGSVSLLTREGEVEIAKRIEEGEKEILAAVLSSSIAIREILELGERLRKGKIRVREIIK
DAGDEQQAEQEEPEEEL--------QG-EAEAEAGAEGDGAAAAEGAEPEKEERKVEHVLKHIDRIRKLERDVAKV---RETLQ-GGKKLSEVKRKELKA
IEAEMMENLEAIQLNKKQIDRIVLRLKSFIKRVEEAEREFFDCERRTGVPVKDLRRLLRETREDEAERKKLAKL-RCALDEELILRVQE-----------
--EAEVPVDELRRTYRMIGDGERKAERAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPSDAVINMNLAEQTRKV
LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLKSFVE-
>tr|G2KPS9|G2KPS9_MICAA RNA polymerase sigma factor RpoD OS=Micavibrio aeruginosavorus (strain ARL-13) GN=rpoD PE=3 SV=1
------------------ATDKPRGSLESIVKKLVTKGKERGFLTYDEINSAIPAEEFSSEQIEDAMATMSDVGIQLVDSEDDVEAEK------------
--GEEYESS---------G--NISSDDSGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLAIESMIAWYEALQKGDILLREVID
LDATYGDSSDGAP----PAD-----DEPEGESAEGAEGGEEENAVSLSAME-QELLPQVSESFSKIQKTYKKMQKVQQERFEHLQNAKQPPAATNKKYDD
LKAQMVELMNEVRLNNARIEQLVGRLYKMNREVVSLEGRLMRLV-DCGVKREDFLQNYYGSELDPNWLAKVAKT-GKGWAKFAEKHVAEVGEIRTQIVTV
TDDAGVPLGEFRRIVGTVQKGEREAARAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMMHEIGREPTPEELAERLHMPLDKVRKVLKIAKEPVSLETPIGDEEDSTLGDFIEDKNALLPVDAAIHSNLRETTTRV
LATLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0A1H6Q9|A0A0A1H6Q9_9BURK RNA polymerase sigma factor RpoD OS=Burkholderiales bacterium GJ-E10 GN=rpoD PE=3 SV=1
-----------------QGSEEDLEARRNKLKALIKLGKERGFLTYAEINDHLPDNLVDAEAIDAIISTFGDMGIQVYDQAPDAETLMNENVPS-ASTDD
DAEEEAEAA---------L--SSVDAEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVIAISACPTTVAEILSHAERIRAGQLPIDEVVD
GLVDPNADDLPGGSSGSS---D-------DDDESDEGESTDIGASGMTAAQLDELKDRALERFDNVAKLFEKMRIAFEK-----------EGYKSKGYTR
AQEQILEELMSLRFTAKMVEKLCDSLRAQVEEVRSLEKKIYDMVNKCGMPRPHFIKHFPGSEINTRWVSREAE-SGEPYAEVLRRNLPAVHELQSKLSAL
QKRAVLPLKDLREVYKQMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTTTVAPADAAQYSSLADVTKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|A0A011NSY8|A0A011NSY8_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Accumulibacter sp. BA-92 GN=rpoD PE=3 SV=1
-----------------QPTPIDDETRKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIISTFNDMGIQVYDEAPDAETLMSDSAPAAGADDA
DVEEQAEQA---------L--STVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVQAISACPTTIAEILNCADKISREEMRIEELID
GLIYPEEEAAAGEPSEDD---D---------DD-DEDDNSEAAEGAAAAASLLKLRTEGLARLELIREHDSKAQALLPR-----------KGSQDKAYLK
LQEQISDEMMGIRFTSKTIERLCDTVRAMVDEVRTCERQIQRCVHTVRMPRAHFIKVFPGNELNLDWVETEIAAAGKTYAAILTRNAPNITEEQRKLLAL
QDRIGIPLKELKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEADPATLAKKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDQATLAPTEAALYSSLRFITKDV
LDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLD-
>tr|R9PQG1|R9PQG1_AGAAL RNA polymerase sigma factor RpoD OS=Agarivorans albus MKT 106 GN=rpoD PE=3 SV=1
----------------------MEQTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADI--SDQVEDIIQMINDMGIQVHENAPDADDLLAENT--T---DE
DAAEAAAQA---------L--ATVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQRSVSEYPETISILLEMYDQYQAEELKISDIVN
SFIDEDEVA---EAAPTA---T-------HI-------DEEEEDTGLD-------PELVKERFDTLREQYEKTHAAIEK-----------HGRMSARATK
EIFELSEIFHTFRLVPKLFDKLVASMRTMMERVRTQERLILKCVEQGKMPKQAFVKAFSKDETSEEWFNEHKTSA-KDYAPALMEVDEEVRRCIFKLKSV
EEETGLTINNIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLSMPVDAATGENLKFATQEV
LAGLTPREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|D0KXZ4|D0KXZ4_HALNC RNA polymerase sigma factor RpoD OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=rpoD PE=3 SV=1
----------------------MYEDQQASIKSLIARGREQGYLTYAEISDHLPEALVDADQIEDIIGMIQEMGISVSEVAPDGDDLLADESRA--ASDE
DATEEAVAV---------LA-SQVDAEFGRTTDPVRMYMREMGTVDLLNRQGEIEIAKRIEEGLIDVTRALAFYPPTIETLLEHYARIEAGDLRMQDVIV
GIIEPEVEIPEDAEEKPL---D-------VAEDEDEE-DDTEEEAVVDNTLDPELV----------RTHLMEIKRLAEN-------------LRSPEYL-
--ASLADQLVQLKLNPAFNEKLLEQIRQAIARIRLLEKQIMHAVDKGGLKRETFIEAFRSNESDIGWVKVATK--GKP-TAKFSQVQPEIERLQKRLNTV
ARDSKLTVAQTREVHRLITLGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMDLPEDKIRKVLKIAKEPISMETPIGEDDDSNLGDFIEDQSAISPMDSATNASLSEIVREI
LASLTPREAKVLMMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLRSFIE-
>tr|F7XXQ0|F7XXQ0_MOREP RNA polymerase sigma factor RpoD OS=Moranella endobia (strain PCIT) GN=rpoD PE=3 SV=1
----------------------MEQNQQSQLKLLVTHGKEQGYLTFAEVNDHLPDDI--SDQIEDIIQMINDMGIRVMEEAPDADDLLLADTN-P--DDE
DAVEAAAQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYLKAISYLLEQYDRVEAGEARLSDLIT
GFVDSSVVEEMM-LA--P---T-------NVDEEEHDEASKEDDNSID-------PGLARQKFVELREQYEMTRKVIKT-----------NGRNHTKSAA
ELMKLSTVFKQFRLIPKLFDYLVNNMRAMMTRVRTQERVIMKCVDISKMPKKNFITLFTGNETSETWFKAALAMN-QPWSEKLQAVDNDVYRSLNKLRQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKDMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQETGREPTPEELAERMLMSEDKIHKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTIEMPLDSATLDSLRSATKEV
LAGLTAREAKVLRMRFGIGMTNDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLE-
>tr|A0A094X7Q6|A0A094X7Q6_9BACT RNA polymerase sigma factor SigA OS=Leptospirillum ferriphilum GN=sigA PE=3 SV=1
-----------------TGDRMSKSEKLNEMKDLISLGKERGYLTYDELNNVLPPEA--SDQLDNLMSYFGDMNIDIVDDESREAGYEMD---SEERGVD
-S-EEEDEG---------I--DMTPGTLSRIDDPVRLYLKEMGAVPLLTREGEIAIAQRIEEGQKEVSGILFGMPLTVRSILSLREKFQTGQIGIREIVD
VMEEETED-EP----------------------------EEGD-SAAL-EQFVRQTDSLSELFLKLNAISEKWKDA--QK-----------NTLREQAKK
IKTEIVELIMEMNLHRKQVELMIRQLHDVVSVLDESERIIDHSRRRLGANKEDILKAIALLKAGKD-----PGERY-QDPEK-LELLKNYQFALERVHEA
EVAALLSSSEIRDSLSLLEAGEQKVREAKAELIKANLRLVVSIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTTRHLVQELGREPLPEELAKEMQMPVEKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKSISPIDSAVRYDLVRKIGKA
LSSLTEREEKVIRLRFGVGESTDHTLEEVGQDFDVTRERIRQIEAKALRKLRHPSRSKHLKSFVD-
>tr|C6HYU0|C6HYU0_9BACT RNA polymerase sigma factor SigA OS=Leptospirillum ferrodiazotrophum GN=sigA PE=3 SV=1
---------------------MSKNERLSEMKDLITLGKERGYLTYDELNHALPSET--SEEMDSILSYFGDMNIDIVEDEADHVEFEAE---GEEALEE
-EADTED-L---------S--DGIAAAGVRTDDPVRLYLKEMGSVPLLTREGEIKIAQRIEEGKTEVFSFLFGVPLSIQSILGLRDKIQTGIIGIRDIID
LEEEETEE-E--------------------------------GKSPAA-EAFIEQAAKIEEHFAKMNELSQKMKAV--LK-----------DPLREKVKK
IRHEVVEVILEMHLQQRQINILIEKLRDVVGQFEETERTLDQCRRRIGLPVDEILAKLSEK----------PKKSK-LSAEK-KELYEQFSKAHERILSL
EAETFLSPSEAKESLQQIIRGEEKVREAKSELIKANLRLVVSIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRHLVQELGREPLPEELAKEMQMPVDKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKTISPIEAAVRYDLVRKIGQS
LSTLTDREEKVIRLRFGIGELTDHTLEEVGQDFDVTRERIRQIEAKALRKLRHPSRSNQLKSFLD-
>tr|I0IQZ2|I0IQZ2_LEPFC RNA polymerase sigma factor SigA OS=Leptospirillum ferrooxidans (strain C2-3) GN=rpoD PE=3 SV=1
---------------------MSKGEKLNEMKDLISLGKERGYLTYDELNNVLPPEA--SDQLDHLMSYFGDMNIDIVEEDGGAGVFDVD---SEDAIVE
-SDEDPDEG---------M--DMTPGALSKIDDPVRLYLKEMGAVPLLTREGEIAIAQRIEEGQKEVSGILFGMPFTIKTILLLRERFETGVVGIREIVD
VFEEEESE-DS----------------------------EEGETSSAV-DQFMLQSEKLAGHFAKMNELAENWHSL--PK-----------TSGRDQINK
VKSDIVELIMEMKLHRKQVELMIRQLHEVVALIEQSTRQMDQVRRKLAVPKEEILKAIESMGSDGI-----VPEKF-SSSDR-HELLLRYRDSLDKVRRA
EADALLSADEIGERAKQLEIGEEKVREAKAELIKANLRLVVSIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTTRQLVQQYGREPLPEELAKEMQMPVEKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKSISPIDSAVRYDLVRKIGKA
LGTLTDREERVIRLRFGIGESTDHTLEEVGQDFDVTRERIRQIEAKALRKLRHPARSKQLKSFVD-
>tr|A0A090I9H7|A0A090I9H7_9GAMM RNA polymerase sigma factor RpoD OS=Moritella viscosa GN=rpoD PE=3 SV=1
-----------------------MESPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDI--SDQVEDIIQMINDMGIQVLETAPDADDLMAENTTAP---DD
DAAEAAAAA---------L--ASVESEIGRTTDPVRMYMREMGTVELLTREGEIKIAKRIEEGIYAVQTAVAEYPEAINSLLAEYDKFLAEETRLSDIIT
GFIDPNADD----VAPTA---T-------HI---DDDEEEEEGNKGPD-------PEEAAEKFAELRKYHTALLKGIKE-----------DGLEHPKTRL
HVEMLSEVFRTFRLIPKQFDRIVNSMRDMMDHVRVQERLVIKCVEQCKMPKAAFVEAFAGHETDIAWFEKAQQSA-APYAQALQRIDFDVRRCINKLKLV
ESTTGLSISQIKNINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMMMPEDRIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLSLPVDAATKDSLKGATDDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|S5ELN1|S5ELN1_SERLI RNA polymerase sigma factor RpoD OS=Serratia liquefaciens ATCC 27592 GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDI--SDQIEDIIQMINDMGIQVLEEAPDADDLLAENSNST---DE
-DAEEAAAQV--------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLIT
GFVDPNAEEDIAPTA------T-------HVE--EEDEDEEEDDNSID-------PELARQKFADLRDQYEATRVVIKK-----------NGRSHASAAE
EILKLSEVFKQFRLVPKQFDFLVNSMRTMMDRVRTQERIIMKCVEQCKMPKKNFVTLFAGNETSTTWFEAALAMA-KPWSEKLKDVAEDVQRSLQKLRQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|X2GV90|X2GV90_9GAMM RNA polymerase sigma factor RpoD OS=Gilliamella apicola GN=rpoD PE=3 SV=1
----------------------MEQNSQSQLKLLIIRGKELGYLTYADVNDHLPEEI--SDQIEDIIQMINDMGIQVLEEAPDSDELLSDNVP-----DE
EAVEAATALV--------L--SNVESEIGRTTDPVRMYMREMGAVELLTREGEIDIAKRIEDGINQVQTSVSEYPEAITYLLEQYNLVETGQVRLSDIIT
GFVDPNAEEVTE-ELPE--------------NEDEDGDSSADEDVSID-------PEVARAKFAELQEQHNKTSEAIKK-----------YGRGHKKAQK
EIENLSEIFKQFRLVAKQFDILVNNMRSMMDRVRAHERVIMKCVEQCKMPKKQFMNYFTGNENNMDWYNKALTSK-SAFAVNLKDFEEQIAAQVNLLQQI
ETETNLSIEQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELSERMQMPEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTALEQPLDAATSESLRSATRDI
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDVLRSFLE-
>tr|A0A0A7S006|A0A0A7S006_9GAMM RNA polymerase sigma factor RpoD OS=Frischella perrara GN=rpoD PE=3 SV=1
----------------------MEQNSQSQLKHLIIRGKELGYLTYADLNDHLPEEI--SDQIEDIIQMINDMGIQVLEEAPDSDEMLSDNVP-----DE
EAVEAATALV--------L--SNVESEIGRTTDPVRMYMREMGAVELLTREGEIDIAKRIEDGINQVQTSVSEYPEAITYLLEQYNLVEQGTVRLSDLIT
GFVDPNAQEGMD-DLPE--------------D---EETESTDDDSSID-------PEVAREKFLALKTQHEITSEAIKK-----------YGRANKKARQ
EIENLSEIFKQFRLVGKQFEILVNNMRQMMDRVRSHEHLIMKCIEQCKMPKKQFMSYFIGNENNMSWFEKATKSK-HAYGEKLKEFESQIAKETEQLQKI
EIETDLSIEQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQEIGREPTPEELSEKMQMPEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTAMEQPLDAATSESLRAATRDI
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDVLRSFLD-
>tr|A0A088MYS9|A0A088MYS9_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Baumannia cicadellinicola GN=rpoD PE=3 SV=1
----------------------MEQNQHSQLKLLVTRGKEQGYLTFAEVNDHLPEDI--SDQIEDIIQMINDMGIQVMEEAPDADDLLAETTSDT---DE
DAVEAAAQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSSVAEYPEAITYLLKQYDRVKSGEVRLADLIT
DFVDAHAEEV--DIASTS---R-------HM-EEDVDDDHTNEDSSID-------TELAHQKFIELREQYEITRNIIQT-----------KGRSHTKAIE
EIIKLSEIFKQFHLVPKQFDYLVKNMRAMMDRVRTQERLIMKCVEISKMPKKNFVKLFAGNETSETWFKTALTMN-KPWSEKLHKVDEDVRESLQKLRQI
EEETDLSIEQVKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPLSMETPIGDDEDSHLGDFIEDTTLELPLESATSESLRSATHDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|A0A0K6HAF7|A0A0K6HAF7_9GAMM RNA polymerase sigma factor RpoD OS=Idiomarina woesei GN=rpoD PE=3 SV=1
----------------------MQQSRQSQLRLLIAKGKEQGYLTFSEVNDHLPSEI--SDQIEDIISMINDMGIKVFENAPDADELMSEDT--A---DE
DAAEAAAQA---------L--ASVDGELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAINFLLDQWDTCEAEEMRLTDIIS
GFIDPNEVD---EAPVAA---T-------HID---DDSDDDANEGGID-------PEFARQKFGELRDQYEKTRKAISK-----------HGRDHAKART
EIEALSDLFKQFRLVPKQFDRLVKDMRDMMHRVRVQERLIMKCVEQANMPKRNFMKLFAGNENSVAWLDQAIADG-EAYSESLSILKPELERCIHKLAEV
EVETGLTIAKVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLDLPVDSATAESLRNAVREV
LGGLTQREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFLD-
>tr|Q602R7|Q602R7_METCA RNA polymerase sigma factor RpoD OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rpoD PE=3 SV=1
---------------------MTPEQQQHQLKELIAKGKMQGYLTFSEVNDHLPSDI--PEQMEDIICMINDMGIEVH-DVPDNEDLQDTAVVAE--SED
EAAEVAAAL---------A--SSVDTELGRTTDPVRMYMREMGTVELLTREGELSIAKRIEEGLNIAANELVRFPAAMEHFLKAFETVDNGELRLSDLIS
DFFDPAAADTVAT-EDDA---E---------GDT-GP----------D-------PELVKEKLAAFRKLHKAAVTAHHK-----------YGYGHEKTQK
SFDALATAFMEFKKTPQFFKELTDTLRDTVAKIREQERALTDCVTKGKMPKAEFIESFSGSETDEGWLDRVCDPAK-PYAAAIKAHAEEIRRIQAKLAQI
EKENRLDIALIKDIHRRVSAGENQARLAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPDELAARMDMPEDKVRKVMKIAKEPISMETPIGDDDDSHLGDFIEDSRVLSPVEHATVASLRETTQQV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|F7RYC7|F7RYC7_9GAMM RNA polymerase sigma factor RpoD OS=Idiomarina sp. A28L GN=rpoD PE=3 SV=1
-----------------------MQTRQSLLKLLIAKGKEQGYLTFAEVNDHLPQDI--SDQIEDIIRMINDMGIKVFETAPDADDLMSEDA--A---DE
DAAEEAAAA---------L--ATVESEIGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINQVQCSVAEYPEAINFLLEQWDAYEAEQIRLTEIIS
GFIDPNEVE---EAPVSA---T-------HID---DEDEEESTDTGVD-------PEEAREKFTELRAQYEATRDAIKT-----------YGRGDDKTTA
EIEKLSELFKHFRLVPKQFDRLVKDMREMMDRVRVQERLIMKCLEQAKLPKRTFVQAFAGNETSMSWFDAVIAKE-KKYAEALEEHRDEVTRCSGKLRAI
AEETGLSIAKVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPQPEELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLDLPVDAATSESLQNAVRDV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFLD-
>tr|A0A0N0ZLR8|A0A0N0ZLR8_9GAMM RNA polymerase sigma factor RpoD OS=Idiomarina zobellii GN=rpoD PE=3 SV=1
----------------------MQQSRQSQLKVLIAKGKEQGFLTFAEVNDHLPQEI--SDQVEDIIRMINDMGIRVFESAPDADDLMAESA--A---DE
DAAEEAAQA---------L--ASVDSEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQCSVAEYPEAINFLLDQWDSYEAEELRLTDIIS
GFIDPEEVD---EAPVAA---T-------HVD----DDEEEESDTGID-------PEFARAKFTELREQYEATRQAIAK-----------HGRDGADARV
EIDKLSDLFKQFRLVPKQFDRLVKDMRSMMQRVRVQERIIMKSVEQGGMSKRDFMKAFASNENSMAWVDAQINSG-ESYASTMKETRDEIERCVNKLVDV
EKETGLTIGKVKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPQPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLDLPIDSATSESLRNSVREV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFLD-
>tr|K2LCC7|K2LCC7_9GAMM RNA polymerase sigma factor RpoD OS=Idiomarina xiamenensis 10-D-4 GN=rpoD PE=3 SV=1
----------------------MQQNRQSQLKLLIAKGKEQGYLTFAEVNDHLPQEI--SDQIEDIIRMINDMGIQVFENAPDADELMSESA--A---DE
DAAEEAAQA---------L--ASVDSEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAINFLLEQWDAFEAEEVRLTDIIS
GFIDPNEVD---TAPVSA---T-------HVD----DDSDDDADTGID-------PEFARQKFTELRDQYEATRQAIQK-----------HGRDHAKART
QIDELSELFKQFRLVPKQFDRLVKDMRDMMHRVRVQERLIMKSIEQGGMPKRQFMRAFAGNENNLSWVDEQVNSS-ESYAESLAAVRSEIERCVKKLAEV
EEETGLTIAKVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLDLPVDSATSESLRNAVRDV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFLD-
>tr|K2IJD5|K2IJD5_9GAMM RNA polymerase sigma factor RpoD OS=Gallaecimonas xiamenensis 3-C-1 GN=rpoD PE=3 SV=1
----------------------MEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPDDI--SDQIEDIIQMINDMGIQVFESAPDADTLMSED--ST---DE
DAVEAAAQA---------L--ATVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDKVEAGEARLSDIIS
GFIDPNAVED---AAPTA---T-------HV-EEEDNSDSSEDDNSLD-------PELAREKFAGLRTQYEAARTVIKA-----------KGRASDEARE
EVLKLAEIFKEFRLVPKQFDRLVADMRDMMDRVRVQERLIMKAVEEAKMPRKVFMKTFPGNESNMGWLDGHLEAG-KGYSEVMKGLEEDLRRCVQKLQQI
EQETGLTIESIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAIRMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPADAATSESLKFATQEV
LSSLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLD-
>tr|K8CTH9|K8CTH9_CROSK RNA polymerase sigma factor RpoD OS=Cronobacter sakazakii 701 GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDI--SDQIEDIIQMINDMGIQVMEEAPDADDLLAENSNST---DE
DAEEAAAQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLIT
GFVDPNAEEDLA-PTA-----T-------HVEDEESDDDSSDDDNSID-------PELAREKFGELRTQYEVTRDTIKA-----------KGRSNAASQE
EILKLSEVFKQFRLVPKQFDYLVNSMRTMMDRVRTQERIIMKCVEQCKMPKKNFITLFTGNETSETWFNAAIAMN-KPWSEKLHDVAEDVHRSLQKLQQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPRSSMKIRIWGI-----SSRIPPSSCRWTPVRRRTT--
CWPVSPRVKRKCCVCVSVSI----------------------------------------------
>tr|A0A0F5AR40|A0A0F5AR40_9GAMM RNA polymerase sigma factor RpoD OS=Salinivibrio sp. KP-1 GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDI--SDQIEDIIQMINDMGIQVVEAAPDADELMSET--VA---DE
DAAEAAAAA---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPASIASLLDQFDKVEAEELRLTDIIS
GFIDPDQDD----VAPTA---T-------HITDEDD---ESDEDVGID-------PELAREKFSELRRTYAAMETAIQQ-----------YGRYDERTKE
SIDALSETFKQFRLIPKQFDRLVNDMRQTMDKVRTQERLVMRCVDQAKMPKKTFVQLFAGNESSDAWIDEALNSG-KPYAERVARYEEDLRRCVQKLKII
EEETGLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPMDSATSNNLKMATNDV
LAGLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|R4YL05|R4YL05_OLEAN RNA polymerase sigma factor RpoD OS=Oleispira antarctica RB-8 GN=rpoD PE=3 SV=1
---------------------MSANKQQSRLKDLIAKGKEQGYLTHAQVNDHLPDDI--PDQVEDIIRMINDIGIPVSEVAPDADAMVAGNDT------N
DAAEEAAAA---------L--AAVDSDVGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIREVMSALAYYPGTVETVLTAFESAEDDVNRIGDVFN
GFIDPSDEIPTPPPQTQP---K-------AADSTDDSDDDDEEPTGMD-------VEMVQGRFKEVRVAYDALEVILAK-----------HGRASKEAEV
AFDELTEVFAPIKLTPRYFEALVNNTRESQEAIRTQERAIMVLTRKCRMDRKEFIKSYQGNETNPDWVDDLIAAD-KPYSEKVAVFKFDIQRAQKKIKTI
ETNVTLSIPEIKEVNRKVSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTMSESPIDTATTGGLIDATRDV
LSGLTARESKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLD-
>tr|W6RKL0|W6RKL0_PSEPS RNA polymerase sigma factor RpoD OS=Pseudomonas pseudoalcaligenes CECT 5344 GN=rpoD PE=3 SV=1
--------------------MSVKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGIPVHESAPDADALLADADT-----DE
AAAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAHFPGTVDGILAEYTRVTTEGGRLAEILS
GYIDPDDGSVPDE-AAAP---V-------PVE--SGDDEEEEGDGGPD-------PEEAARRFTAVAEQLEKARKALKK-----------HGRGSKQAIE
ELATLAELFMPIKLVPKQYDALVTKVRDALDRLRAQERAIMQCVRDARMPRADFLRLFPGNEIDMDWAANLAKGKA-KYAEAIGALQADIQRCQQKLADL
EAECNLTLAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|A0A0D0PL05|A0A0D0PL05_PSEFL RNA polymerase sigma factor RpoD OS=Pseudomonas fluorescens GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRIKELILLGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGINVFEVAPDKDALLADADT-----DE
AAAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAHFPGTVDHILSEYNRVTTEGGRLSDVLS
GYIDPDDGIAPPAAEVPP---P-------IDEDAEAGDDEEEAESGPD-------PIIAAQRFGAVADQMEITRKALKK-----------HGRNNKAAIA
ELLALAELFMPIKLVPKQFEGLVERVRSALDRLRQQERAIMQCVRDARMPRADFLRQFPGNEVDESWTDALAKGKS-KYAEAIARLQPDIVRCQQKLSAL
ETETGLSIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|J3VU83|J3VU83_9ENTR RNA polymerase sigma factor RpoD OS=secondary endosymbiont of Heteropsylla cubana GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLVTRGKEQGYLTFSEVNDHLPEDI--SDQIEDIIQMINDMGIQVMEEAPDADDLLAETTSDA---DE
DAAEAAAQV---------L--SSVEAELGRTTDPIRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVESGDARLSDLII
GFVDPNAKEDIP-SI--V---D-------QIDEEDNEDENTDDDNSID-------PILAQKKFVALRKQYEITCHVIKT-----------RGRSHPKSAS
EILNLSEVFKEFRLVPKQFEHLVNKMRSMMDRVRIQERLIMKCVEISKMPKKNFIMLFSGHETSTSWFQSALMMN-KPWSKNLHEVDADVLKRMKKLRQI
EEETGLSIGQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMLMPEEKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSLELPLDSATSDSLRSATHDV
LAGLTTREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|A0A0P9FKI9|A0A0P9FKI9_9GAMM RNA polymerase sigma factor RpoD OS=Pseudoalteromonas sp. P1-9 GN=rpoD PE=4 SV=1
----------------------MEQTPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDI--SEQVEDIIGMINDMGIQVVENAPDADELMQETT--T---DE
DAAEAAAAA---------L--ATVEKEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQVSVAEYPEAINYLLEQWDNYLAEDVRLSDIIS
GFYDPDA----DETMISA---T-------HI---DDDEDEEEADTGPC-------PEEAAENFEKLRNLYNQARGIFEE-----------KGRSHPDAVA
IIAEIGEHFRTFKLMPKQFDRMVKNMRDMMDRIRVQERIIMKVVQIAKMPKKTFVKNFANNETDSAWLDREIASG-ELYSNKLAEVKFEVERCINKLRQM
EESTGLNLERIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMIMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIESPVDSATMESLKNATHDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDLLKSFLD-
>tr|I8U6A4|I8U6A4_9ALTE RNA polymerase sigma factor RpoD OS=Alishewanella agri BL06 GN=rpoD PE=3 SV=1
----------------------MEQSPQSQLKLLILKGKEQGYLTFAEVNDHLPQDI--SDQIEDIIRMINDMGIQVFESAPDADDLMSDAT--A---DE
DAVEEAAQA---------L--VSVDKELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQTSVAEYPEAITYLLEQWDKYEAEEIRLSDIVS
AFVDPNEVD---DAPVMG---S-------NISDEDGDSDSDDGDSGPD-------PELAKQKFAELRAQYEVTRNSIVQ-----------NGREHATTKT
EIEKLSEVFRCFRLVPKQFDRLVKNMREMMDRVRVQERLVMKAVEYAKMPKKNFVKAFTGHETSTAWVDAEISGS-KPYSAKLAEAKDELFRCIEKLKKV
EEETGLSIFKIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELSERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSSGESPLDSATMESLKNATNEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLKSFLD-
>tr|E1SWK9|E1SWK9_FERBD RNA polymerase sigma factor RpoD OS=Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) GN=rpoD PE=3 SV=1
----------------------MDQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPADM--SDQIEDIIQMINDMGIQVFESAPDQDELMSEDA--T---DE
DAAEAAAQA---------L--ASVEGELGRTTDPVRMYMREMGTVELLTREGEILIAKRIEDGINQVQCSIAEYPEAISFLLDQWDRFEAEEIRLAEIIS
GFVTEEE------EAPTA---T-------HVD----DDSDDDTSNGPD-------PEQAREKFTSLREHYELVQKAFAE-----------HGRDSLEAAM
LITRLSELFKEFRLVPKQFDVLVNNMRSMMDRVRVQERLIMKCVEQAKMPKKNFLKLFAGHESETAWLQAEIDAG-KSYSAALGEHQEELHRCIQKLAQI
QEETGLSIAKIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLAQPVDSATAESLKAATAEV
LAGLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD-
>tr|V1E6N7|V1E6N7_9GAMM RNA polymerase sigma factor RpoD OS=Shewanella decolorationis S12 GN=rpoD PE=3 SV=1
----------------------MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADM--SDQIEDIIQMINDMGIRVFEEAPDADDMMSEDN--T---DE
DAAEEAAAA---------L--ATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINTVQSSVAEYPQAIAMILEQYDQYEADELRLSDIIS
GFVNPDEED---LG-PTA---T-------HIDEDGDGEGDDDGNKGPD-------PEEARERFSQLRTAYENALKIIDA-----------KGREHPESIQ
ALFEIGEIFKEFRLVPKQFDRLVKGMRSMMDRVRVQERLLMKCVEQAKMPKKNFVKFFTGNETNLDWFDAEKNSN-KPYAEGLRMVEEDVQRCRSKLAAI
EEETGLVIAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKSATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD-
>tr|A0A081G0A4|A0A081G0A4_9ALTE RNA polymerase sigma factor RpoD OS=Marinobacterium sp. AK27 GN=rpoD PE=3 SV=1
-------------------MSDNSQQQQSRLKELIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIRMINDMGISVSEEAPDAEDLLTGGDS------D
EADDEAVAA---------L--AAVESDAGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGIREVMMALAQFPGSVNTILDAYNAALQEEGRLSDIFS
GYIDPDAEAPEEESE-AP---I-------DIEDDNSDSDSDEKDRGPD-------PEEARMRFGLLQNAIDQYQAAAAT-----------GD--VKAMSE
AQESLGLAFSPIKLSPRFYDQLVERVRDYIDRIRQQERTIMRCTQRARMPRKDFIQKFPGNETNSNWFDELVASG-AGYAPYIEDNLGDLKRAQRRLIQI
EEEVGISLSEIKEVNRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSSLGDFIEDTTLSSPVDTATGEGLREATKEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLD-
>tr|A0A099PAN5|A0A099PAN5_9GAMM RNA polymerase sigma factor RpoD OS=Nitrincola sp. A-D6 GN=rpoD PE=3 SV=1
-------------------MS-DTSQQQSRLKELIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIRMINDMGISVSEEAPDAETLMTEGDS------E
EADEEAVAA---------L--AAVESDAGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMMALAHFPGSVEAILAAYDATLQEEGRLSDIFS
GYIDPDAPIPEEEVD-VD---E-------IDDDDSTDDADEEKERGPD-------PEEARQRFGLIREKLDAYLLSLNE-----------KGKDSPEAKL
ALEELSIAFSPIKLSPRFYEMLVSRIRQFIEKVRAQERTIMRCTQRAGMSRKDFISGFPGNETNPEWFDKLASGK-QSWASKIELSLDDLKRAQRRLINI
ENDVGISLSEIKDVNRRLSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAEKMEMPEDKIRKVLKIAKEPISMETPIGDDEDSSLGDFIEDVIMASPVDTATGEGLREATRSV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFLD-
>tr|W9V482|W9V482_9GAMM RNA polymerase sigma factor RpoD OS=Nitrincola sp. AK23 GN=rpoD PE=3 SV=1
-------------------MS-DTSQQQSRLKELIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIRMINDMGISVSEEAPDAETLMTEGDS------E
EADEEAVAA---------L--AAVESDAGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMTAFAHFPGSVDEILEAYNGTLREEGRLSDIFS
GYIDPDSFVPDTEVE-LD---E-------IEDGEGSDASDDEKDRGPD-------PEEAKQRFGLIQESLDNYRAAFNS-----------FGKYDPRTLQ
AMEELCAAFSPLKLSPRFYELLADRVRNTIEKIRTQERTIMRCTQRCGMPRKDFIQGFPGKETDPEWLDQVASGN-TSFAKNIHANLADLKRAQRKLIQI
ETDTGITLAEIKEVNRSLSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAEKMEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDVTMSSPVDTATGEGLREATRSV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLD-
>tr|Q2BJF6|Q2BJF6_NEPCE RNA polymerase sigma factor RpoD OS=Neptuniibacter caesariensis GN=rpoD PE=3 SV=1
-------------------MSDTSQQQQSRLKELIARGKEQGYLTYSEVNDHLPQDI--PDQVEDIIRMINDMGISVSEEAPDAETLMTEGDS------E
EADEEAVAA---------L--AAVESDAGRTTDPVRMYMREMGTVELLTREGEISIAKRIEEGLREVMSAVACFPGTVESILEAYKLTLEEEGRLSDIFS
GYIDADDDEEIP----AA---V-------IPDSDDDDDEEDEKEKGPD-------PEEAARRFGLLSDNYDALLIALDK-----------HGRDSKEFGA
AQVELSESFAPIKLAPRYYEALVNQVRSTIENIRNQERTIMRCTQRAKMPRKTFIKEFPGNEVNADWFNQVIESG-ESYSRAIKTNLIELKRAQKKLIQA
EIETGISLAEIKEVNRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDTTISSPVDSATGEGLREATREV
LAGLTVRESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRGFLD-
>tr|A4C782|A4C782_9GAMM RNA polymerase sigma factor RpoD OS=Pseudoalteromonas tunicata D2 GN=rpoD PE=3 SV=1
----------------------MEQTPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDI--SDQVEDIISMINDMGIQVCESAPDADELMQETT--T---DE
DAAEAAAAA---------L--ATVDKEIGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGINQVQISVAEYPEAITYLLEQWDKYEAEEIRLSDIIS
GFFDSDE---E-QFPIAA---T-------HI---DDDSNEEEVDLGPD-------PELARENFEKLRDLYNKARLIFEE-----------KGRSHPDAKE
AITEIGELFRTFKLMPKQFDRMVNNMRDMMDRVRVQERLIMKACQIAKLPKKTFIKHFANNESNGEWLDIEINAG-EKYSDKLAECRPEIERSLNKLRNM
EQTTGLSVERIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPNPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIESPIDSATMESLKGATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDLLKSFLD-
>tr|A0A0H3YUS5|A0A0H3YUS5_PSEST RNA polymerase sigma factor RpoD OS=Pseudomonas stutzeri GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRLKELIQRGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGINVFETAPDADALLAEADT-----DE
AAAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAHFPGTVDSILADYERVTNEGGRLSDILS
GYIDPDDDGAAAPQEVEP---E-------TPEEEESDTEEEEGDGGPD-------PEVARVRFGAVAEQLEKANKALKK-----------HGRASQQATE
ELEALAILFMPIKLVPKQYDALVERVRDALNQIRAQERAIMQCVRDARMPRADFLRQFPSNETNLDWAEQLAAGKS-KYAEAIGNRKEEIQRCQQKLIEL
EQQCELAIADIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPIDVATVESLKEATREV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|A0A0K2IPB7|A0A0K2IPB7_STEMA RNA polymerase sigma factor RpoD OS=Stenotrophomonas maltophilia GN=rpoD PE=3 SV=1
-------------------MANERPAQ-SEIKQLISKGLEQGYLTYAEVNDHLPDDM--PEQIEDIIGMINGMGIDVHEVAPDVETLLNDGNTGN-REDD
TAAEEAAAA---------L--SALDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLSQVQAALGQFPVSVESLLTDYEAHKEGKKRLAEVIV
GFNDLTDEEPAPPAAAAD---D---------DDDVDGGDEEAAPTGPD-------PEEVAARMQALSDAFNAFKKAATKG----------DK--K-NLPR
LREEMSAVFVTLKLPLPLTDVLTKQLRDTMASIKAHERRVLNATVTARMPRKDFIRSWEGNQTNLEWVEDALKRKQ-KWSSALREVKDQIIAEQQATIDI
EKLTQLDLEELKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIENTTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|T5KD33|T5KD33_STEMA RNA polymerase sigma factor OS=Stenotrophomonas maltophilia MF89 GN=L681_10515 PE=3 SV=1
--------------------MANERPAQSEIKQLISKGLEQGYLTYAEVNDHLPDDM--PEQIEDIIGMINGMGIDVHEVAPDVETLLNDGNTGNREVDD
-AAEEAAAA---------L--SALDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLSQVQAALGQFPVSVESLLNDYEAHKEGKKRLAEVIV
GFNDLVDE-----EPAP--------------DEDEDD-DVEGGEEEAAPP-------DPEEVAARMQALSDAFNA----F-----------KKDKKNLPR
LREEMSAVFVTLKLPLPLTDVLTKQLRDTMADIKSHERRVLNATVTARMPRKDFIRSWEGNQTNLEWVEDALKRKQ-KWSSALREVKDQIIAEQQATIDI
EKLTQLDLEELKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVKRFDPDMGVRLVSFAVHWIRAEMHEFILKNW
RIVKVATTK--AQRKLFFNLRKSKTRLGWMNAAEAVAKDLNVSEREVMEESRLSGRDIGFDAPSDEDNEHAPAAFLADDPSMAYEREDNEDNQMQLLREG
LAELDARSRDIIRRRW-LDADSKVTLQELADEYGVSAERIRQVEANALKKMKALFTA---------
>tr|A0A0M6W938|A0A0M6W938_9ENTR RNA polymerase sigma factor RpoD OS=Candidatus Providencia siddallii GN=rpoD PE=3 SV=1
----------------------MEQNQQSQLKILVTKGKEQGYLTYAEVNDHLPDDI--SDQIEDIIQIINNMGIQVMEKAPDADDLLTENISGH---CD
DAAEAAAQV---------L--SSVENEIGRTTDPIRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCAVAEYPETINYLLEQYEQIGSGENKLSDLII
GFVDINADEVIT-SNINI---E-------N-NENDRDDCDDDQDNSID-------PELAYLKFSNLREQHKKTRYNIKK-----------YGRKDIRTIS
EIKQLSELFKEFRLVPKQFDYLVNNMREMIDRIRFQERIIIKCVECCKMPKKNFMTLFTNNETNENWLTTAKSMN-KSWSEKLFKVENEILKSIYNLRKI
EEKIGLPIEQVKDINRRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSVADQA
RTIRIPVHMIETINKLNRISRQMLQEIGREPSPEELAERMLIPEEKIRKVLKIAKEPISMETPIGDNEDSHLGDFIEDTSLELPIDSATTESLRAVTHEV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|A0A089X9G4|A0A089X9G4_9ENTR RNA polymerase sigma factor (Fragment) OS=Thorsellia anophelis GN=rpoD PE=3 SV=1
----------------------MENTPQSQLKILVTKGKEQGFLTYAEVNDHLPEDI--SDQIEDIIQMINDMGIQVLESAPDADDLLTAPPLET---DE
DAVEAATQV---------L--SSVESEIGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEDGINEVQSAVSEYPEAISYLLEQYELVEADEVRLSDLIV
AFIDPNAAEDEL-AEEAL---A---------EDDEAETESADTDNSID-------PEVAREKFQSLRKQYEITLAMIKK-----------HGRSHAKSVA
EINNLSEIFKQFRLVPKQFDYLVASMRGLMDAIREQERLIAKCVEYCKMPKKNFMAYFVGKETTMSWFDKACGLK-KPYAEKLPEVRNEVENAVKSLAQI
EIDTGLTIEQAKDINKRMSLGEAKARLAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELSERMGMPEDKIRKVLKIAKEPISIETPVGDDDDSHLGDFIEDTTLELPIESATMESLKNATQEI
LAGLTGREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDVLRSFLD-
>tr|A0A0D7FDW8|A0A0D7FDW8_9PSED RNA polymerase sigma factor RpoD OS=Pseudomonas oryzihabitans GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGINVFETAPDADALLAETDT-----DE
AAAEEAAAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAQFPGTVDYILSEYTRVTTEGGRLSDVLA
GYIDPDDGSLPNESEELP---V-------PNEEESDDADEEEGDGGPD-------PEEARLRFGAVAEQLDKTQKVMKK-----------HGRDDDRAVE
EFVALAVLFSPIKLVPKQYEALVTRVREALERVRGLERAIMQAVRDARMPRADFLRHFPGNETNTDWTAGLLKGKP-KYAEGLERFQADIQAKQTQLAEL
ERDYELKVAQIKDINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVATSESLKEATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|A0A0K6IPQ3|A0A0K6IPQ3_9GAMM RNA polymerase sigma factor RpoD OS=Marinomonas fungiae GN=rpoD PE=3 SV=1
----------------------MPDTQQSRLKELIAKGKEQGYLTFAEVNDHLPDDL--PEQVEEIIAMINDMGIVVSEYAPDKESLMEEGDS-T----D
DAAEEAAAA---------L--AAVEGDVTRTTDPVRMYMREMGTVELLTRAGEIAIAKRIEEGTREVMAALSYYPGAVEVLLDHYDKALEEEGRLSDIFS
GFIDGDGEEPVFEELEEA---V-------DVEDGDSESDENETESGPD-------PEETALRFGEIRRAHRELAALLEQ-----------HGRAHPEVAA
KQEELSIMFAPIKLSPKIFDDLIERIRSRMDKLREQERLIMQCVRKANMPRTEFLKLFPNNETNQNWIQERIDSG-ANYADGLQANEAEFMRCQRKLRGI
EKDTGLSIAELKEINRRISIGETRARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAVRMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDDGAVSPSDTATIEGLKESTTMV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|F2K4I4|F2K4I4_MARM1 RNA polymerase sigma factor RpoD OS=Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) GN=rpoD PE=
----------------------MSDTQQSRLKELIAKGKEQGYLTFTEVNDHLPDDL--PEQVEEIVAMINDMGIVVSEYAPDKESLMEEGDS-T----E
EAAEEAAAA---------L--AAVEGDVARTTDPVRMYMREMGTVELLTRAGEIAIAKRIEEGTREVMASLSYFPGAVDVLLDTYARTVEEEGRLSDIFS
GFIDGDGEEPIFEEVIEE---V-------VEEESSDDDEEEETESGPD-------PEETARRFNEIKRIHHEVLALLEN-----------SDRQDPAVRA
KQEELSISFAPIKLVPKLFDDLIDRVRSRMDKVREQERLIMQCVRKAGMPRTEFLKRFPSNETNPGWLQEQIDLS-ASYSAALEENEAEFSRSQRKLRAI
SKDTGLSIAQLKEINRRISIGETRARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAVRMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDDGAESPVDTATIEGLKESTTTV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|A6VU43|A6VU43_MARMS RNA polymerase sigma factor RpoD OS=Marinomonas sp. (strain MWYL1) GN=rpoD PE=3 SV=1
----------------------MPDTQQSRLKELISKGKEQGYLTYAEVNDHLPDDL--PEQVEEIIAMINDMGITVSEVAPDKDSLMEEGDA-T----E
AAAEEAAAA---------L--AAVEGDITRTTDPVRMYMREMGTVELLTRAGEIAIAKRIEEGTREVMAAISYFPGAVDVLLDAYAKVQEEEGRLSDIFS
GFIDGDGEEPVFEDVATE---E-------PIDDDDSDTAEEETDNGPD-------PEETALRFNDITRIYTELKELLET-----------RNRQDPAVQS
KQEELSISFAPIKLVPKLFDDLVDRVRSRMEKVREQERLIMQCVRKSGMPRTEFLKRFPSNETNSDWLKEQIASG-ADYAATLEENEAEFMRSQRKLRAV
SKETGLTIAELKEINRRISIGETRARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAARMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDDGAESPIDIATIEGLRESTTMV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|A3Y8J0|A3Y8J0_9GAMM RNA polymerase sigma factor RpoD OS=Marinomonas sp. MED121 GN=rpoD PE=3 SV=1
----------------------MSDNQQSRLKELIAKGKEQGYLTFAEVNDHLPDDL--PEQVEQIIAMINDMGIVVGEYAPDKENLMEEGDS-T----E
AAAEEAAAA---------L--AAVEGDVARTTDPVRMYMREMGTVELLTRAGEIAIAKRIEEGTREVMAAVSYYPGAVQTLLDAYEKSKEEEGRLSDIFS
GFIDGDGEEPVFEDAPLV---E-------EVEDGDDDEDEEETDNGPD-------PEETARRFGEIERNHTELLALLEN-----------HSRQDSIVKE
KQEELSICFAPIKLVPKIFDDLVDRVRSRMDKVREQERIIMQCVRKAGMPRTEFLKRFPNNETNIQWFPDQIASG-AGYAAALQENEAEFMRSQRKLRNI
SKDTGLTIVELKEINRRISIGETRARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAVRMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDDGAESPIDTATIEGLREATTSV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|A0A0F0EHC7|A0A0F0EHC7_9PSED RNA polymerase sigma factor RpoD OS=Pseudomonas sp. 5 GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGINVFESAPDADALLAEADT-----DE
AAAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAHFPGTVDYILSEYDRVTAEGGRLSDVLS
GYIDPDDGIAPPAEVPPP---V-------DPEEKESDEEEEETESGPD-------PVVAQQRFGAVQEQLNATLKVLKK-----------NGRQHKDSLK
AMLELAELFMPIKLVPKQFEVLVERVRSALDRLRQQERAIMQCVRDARMPRADFLRLFPSNETDQTWSGDLSKRST-KWAAALGEKNDAIVACQQKLIDL
ETETGLTIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|A0A0B3BLS2|A0A0B3BLS2_9PSED RNA polymerase sigma factor RpoD OS=Pseudomonas tuomuerensis GN=rpoD PE=3 SV=1
--------------------MSVKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGINVFETAPDADALLAEADT-----DE
AAAEEAAAA---------L--AAVESDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLREVMSAIAHFPGAVDGILAEYQRVVSEGGRLSDVLS
GYIDPDDGTLPAE-EVEP---V-------IVESSESSDDETETDGGPD-------PEEAARRFNAVAEQLAVAKKALAK-----------HGRSHPTSVA
ELLALAELFMPIKLVPKQFDALVEKVRSALERVRQQERAIMQCVRDARMPRTDFLKLFPGNEVDLDWSTQIAKGKA-KYAEAIGNLQDDIKRNQQVLIDL
QNEVDLTIAEIKDVNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDATMQSPIEVATVESLKEATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|A0A088P1E3|A0A088P1E3_PROST RNA polymerase sigma factor RpoD OS=Providencia stuartii GN=AFL46_00245 PE=3 SV=1
----------------------MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDI--SDQIEDIIQMINDMGIQVMEEAPDADDLLAETTSDT---DE
-DAAEAAAQV--------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDHVEAGESRLSDLIT
GFVDPNAEEDLAPTA------T-------HVDDEDGDDSDSDDDNSID-------PELAREKFSELRAQYEKTRQHIKQ-----------FGRNNAQTAQ
AIEELSEVFKQFRLVPKQFDYLVNNMREMMDRVRLQERTIMKCVEQCKMPKKNFITLFSGNETSETWLTAAKAMN-KPWCEKLVEVEEEILRCLQRLRQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPLDSATSESLRSATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|A0A0D8D6E6|A0A0D8D6E6_9GAMM RNA polymerase sigma factor RpoD OS=Thalassomonas viridans GN=rpoD PE=3 SV=1
----------------------MVQAPQSRLKELITKGKEQGYLTFAEVNDHLPQDI--SDQVEDIIRMINDMGIQVFENAPDTDTLMSEAN--T---DE
DAAEAAAAA---------L--ATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIAKRIEEGIKEVQHSVAEYPPAINFLLEQWDNYVAEEIRLSDIVV
GFLDPDAQD--DDIAAAA---T-------HI-S---ESDDDDEESGPD-------PEVAKEKFAALREAYEHANKVIDE-----------KGRGHVDSQA
AIDGIADVFKEFRLIPKVFDRLVKNMRSVMDRLRVQERLIMKCVVGAGMPKATFIKIFPGNETSKDWFIEQMNAG-EPYSAKLKNVEQDVERCIYKLSML
EQETYLNVHGIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELAERMIMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDSATSENLKNATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFLD-
>tr|A0A099KIS8|A0A099KIS8_COLPS RNA polymerase sigma factor RpoD OS=Colwellia psychrerythraea GN=rpoD PE=3 SV=1
----------------------MEQAPKSRLKELITKGKEQGYLTFAQVNDHLPQDI--SDQVEDIVSMINDMGIQVFENAPDQDTLMSEGN--T---DE
DAAEAAAQA---------L--ATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIAKRIEEGIKEVQRSVSEYPPAINFLLDMWDNFEAEELRLTDIIT
GFLDPDAEE--EDVPAAA---T-------HV-D---DEDEEEEDTGPC-------PELAREKFTALREAYEHSNKIIEK-----------HGRGHKDAQE
AIDAVAEVFKEFRLIPKLFDKLVKNMRSMMDRLRVQERLIMKCVVGASMPKTTFIKLFPGNETSKEWFEAEKSAG-KPYSTKLGDVELDVERCIYKLNQI
EEETHLNIHGIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELAERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDSATSENLKGATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFLD-
>tr|A0A099KGY7|A0A099KGY7_9GAMM RNA polymerase sigma factor RpoD OS=Thalassotalea sp. ND16A GN=rpoD PE=3 SV=1
----------------------MSQAPQSRLKELITKGKEQGYLTFDEVNDHLPQDI--SDQVEDIIRMINDMGIQVFEKAPDADELMAEAN--T---DE
DAAEAAAQA---------L--ATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIAKRIEEGIREVQRSVSEYPPAINYLLEQWDNFEAEEARLSDIII
GFLDPDAEE--E-AAPTA---T-------HV-D---DEDEEEEDTGPD-------PELAREKFTELRQLYEAANQVIEK-----------NGRNHKDSQT
AIDAIAECFKEFRLIPKLFDRLVKNMRDVMDRVRVQERLIMKCVVGAGMPKTHFIKIFPGHETETQWLEDEIAAG-HAYSEKLKIVSFDIERCVYKLTHL
EEETYLSVQSIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDAATTENLKNATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFLD-
>tr|A0A091BB74|A0A091BB74_9GAMM RNA polymerase sigma factor RpoD OS=Arenimonas composti TR7-09 = DSM 18010 GN=rpoD PE=3 SV=1
-------------------MANDRPAQQSEIKQLISKGLEQGYLTYAEVNDHLPDDI--PEQLEDIIGMINGMGIEVHEVAPDAETLLSDSSPSR-ESET
-AAEEAAAA---------L--SSLDTEGGRTTDPVRMYMREMGSVELLTREGEIAIAKRIEEGLNQVHQSLASFPWSIQLLLEDYDLHLEGKKRLNEVVV
GFLDMEEPEEVIPAAAVE---E---------AVEGADEETAAVDTGPD-------PAEVGRRMDALKALYVKFQKTHAKY----------GA-ADKKTIK
AREEMAAEFMRLKLPLALMEAFVRKLREVVNAIKEHERAILDATRKAKMPRKDFLRAWPGNELNLDWADEIIRRKQ-KWSSGIREYRDEIVAEQHKLGGI
EQSLWLTLPDIKEINRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAKKMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSIESPIEATTNLGLMETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEQLRSFLD-
>tr|A0A091AUU4|A0A091AUU4_9GAMM RNA polymerase sigma factor RpoD OS=Arenimonas oryziterrae DSM 21050 = YC6267 GN=rpoD PE=3 SV=1
-------------------MATDRPAQQNEIKLLISKGLEQGYLTYAEVNDHLPDDI--PEQIEDIIGMINGMGIEVHEVAPDAETLLSDATPTR-TDDT
VAAEEAAAA---------L--TALDTEGGRTTDPVRMYMREMGSVELLTREGEIAIAKRIEEGLNQVLSSLASFPWSIQMLIEDYDLHVEGKKRLSEVVI
GFLDVEAPAEEIPEVVLD---E---------VETEDGEEAAVVDTGPD-------PAEVLRRMDVLKALYAKFQKTHAKV----------GP-ADKKSLK
LREEMAAEFLRLKLPLAEIDSFVRKLRDVVSSIKEHERRILDATRDAKMPRKDFIKAWPGNETVTGWADEVIRRKQ-KWSSGIREFKDAIVSEQEKLIGI
EHSLYLSLPDIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAKKMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIETATNIGLRETVSDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|I7ZJ81|I7ZJ81_9GAMM RNA polymerase sigma factor RpoD OS=Hydrocarboniphaga effusa AP103 GN=rpoD PE=3 SV=1
--------------------MSNSAEKQSQIKVLIALGKEKGYLTYAEVSDHLPE-V--SEQIDDVISMIQTMGIQVHDEAPDEESQFSEPAVVASAEEE
DAAEEAAAA---------L--AASDDQFGRTTDPVRMYMREMGSVELLDREGEIRIAKRIEEGLNEALYAMAIYPETVKILLDAYASVGEGKRRLAEVIT
GFFDPNAEPVAEA-PPPP---V-------EEDNAGGDEEEEAVDTGPD-------PEEARLKFEELQSLYDTAWKALQK-----------TGADDKKTLG
KREAVADLIMTFKLSPKIVDEINRNLRNKIENIREIERSVMRCVIDAGMSREEFLGKYKGTPDDHDWLEKSIRAKR-KYSATLATRHDEIVELLGQLTKI
ENEFLIAVDEIKDINRRMNVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAVKMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTAAVSPLESATSSSLAEATHQI
LASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRANYLRSFLD-
>tr|A0A0E3U3S2|A0A0E3U3S2_9ENTR RNA polymerase sigma factor RpoD OS=Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus GN=rpoD PE=3 SV=1
----------------------MENTSQSQLEILIIRGKEQGYLTISEINDHLPDDV--AEQIEDIIKMINDMGIKVVEEAPDTDEFLVEDSAPD---DE
DITAAAVQAL--------S--SHVESEIGQTTDPVRMYMREMGTVELLTREGEINIAKRIEDGINQVQCSVAEYPEAITYLLEQYKRVDIGETRLSDLIT
GFVDPNAKEDTP-ANT-----I-------SIEEHEEEENNNDDDNNID-------PKLARQKFIELKKQYEITQTIIKF-----------NGRNHIKAIE
EIFKLSDIFKQFRLVPKQFDHLVNNMRIMMERIRIQERFIMKCVENSKMPKKIFITLFVGNEANEHWFKTAQTMN-QPWSEKLNNIYQKVLCSLNKLHDI
EEETGLTIKQIKDINKRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEIGHEPSPEELSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSSLELPHELATSENLRSATQDV
LAGLTPREAKVLRMRFGIDMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLD-
>tr|A0A085HG42|A0A085HG42_9ENTR RNA polymerase sigma factor RpoD OS=Leminorella grimontii ATCC 33999 = DSM 5078 GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLVTLGKEQGYLTYAQVNDHLPEDI--SDQIEDIIQMINDMGIQVMEIAPDADDLLAENTADT---DE
-DAAEAAAQV--------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQCSVAEYPEAITYLLEQYDRVETGETRLSDLIT
AFIDPNAD-ELGPAA------T-------HVEDGEDSDSDSDEDIGID-------PEMAREKFAELRDQYEATRKAIKA-----------HGRSNAKAQE
EIVKLSDVFKQFRLVPKQFDYLVNNMRQMMDRVRTQERLILKCVEQSKMPKKNFVNMFAGNETNLEWFNGAVAMG-KPWSEKLKEVGEEVERSIQKLQMI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|A0A0M0IH08|A0A0M0IH08_9VIBR RNA polymerase sigma factor RpoD OS=Vibrio xuii GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKQLVIKGKEQGYLTYAEVNDHLPAEI--SEQVEDIIQMINDMGIRVVETAPDADDLLNDDDTIT---DE
DAAEAAAAA---------L--SSVENEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQNAVAEYPGTIPYILEQFDRIQAEELRLTDLIT
GFVDPDADET---AAPTA---T-------HIDDS--DDEEEEEDTGID-------PELALEKFTALRNTFQNYQLACNE-----------YGNESPKATL
AHEMVIDVFKEFRLTPKQFDYLVEELRTSMERVRTQERLIMKTVEYGKMPKKSFITLFTGNESTDAWLDEILASD-KPYAEKVRRSEDDIRRSISKLKII
EEETSLTVQNIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATAGSLKVATKDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A0A7MIE7|A0A0A7MIE7_ACTEU RNA polymerase sigma factor RpoD OS=Actinobacillus equuli subsp. equuli GN=rpoD PE=3 SV=1
--------------------MEQQLEQQSQLELLIAQGREQGYLTISEVHDHLPEEL--AEQIEDIIQMINDMGIKVLETAPDTDELLAENIAD-----E
DVVEE-ATKV--------L--STVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAVAEYPEALTELIGFYAQVEEGTMRLSDLVT
AFVDPNAQEEATVEDLEA---V-------L-DEESDSSADTGDDNSID-------PELAREKFYALREQHEKALQAIQK-----------HGRGHKKSRE
HIQALSDIFREFRLVPKQFDLLVESMQKMMKQVRAEERQIQRAVEYAQMKKADFLKLFQGNETSEEWIEKAINAK-KGAAPKLANYVDQIRVNIANLQRM
EQNTGLTVAQIREIGGRIANGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRIATNEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A0E3U3P9|A0A0E3U3P9_9ENTR RNA polymerase sigma factor RpoD OS=Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri GN=rpoD PE=3 SV=1
----------------------MEHNQESQLKLLVTRGKEQGYLTFADVNDHLPEEI--SEQIEDIIQMINDMGIQIMEEAPNIDDFLSENTDNS---DE
DITEATVQA---------L--SNVEAEIGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYERVETGETRLSDLIT
GFVDPNDDTLEI-NN-NT---I-------QITDEDNDENNNDDDHNID-------PEFAHTKFKELQKQYEITKKIIKF-----------NGRNHYQSLQ
EIFKLSEIFKQFRLAPKQFDYLVNNMRAVMNRVRIQERIIMKCIEISKMPKKKFIDLFSGNESNGIWLNTAIAMN-QPWSKKLLDVNKEINHSLHLLHDI
EHETGLTIQQMKNINRRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQIVQEIGHEPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGEDEDSHLGDFIEDTSLDLPLDAATFDNLRTATHDI
LSGLTPREEKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLE-
>tr|A0A0G4QDA3|A0A0G4QDA3_PROVU RNA polymerase sigma factor RpoD OS=Proteus vulgaris GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDI--SDQIEDIIQMINDMGIQVMEEAPDADDLLAENSNDT---DD
-DAAEAAAQV--------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLIT
AFIDPNAEEVAESED------V-------NLDEDGDNDSDSDDDNSID-------PELARQKFTELREQYEKTRQTIKA-----------KGRNHKDTEL
EILLLSEIFKQFRLVPKQFDYLVNNMREMMDRVRTQERHIMRCVDQVKMPKKNFITLFTGNETNDTWFTAARAMN-KPWSEKLAGIEEEVQRSLQKLQQI
EVETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHEV
LAGLTLREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|L8CZE5|L8CZE5_9GAMM RNA polymerase sigma factor RpoD OS=Pseudoalteromonas luteoviolacea B = ATCC 29581 GN=rpoD PE=3 SV=1
----------------------MDQSPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDI--SDQVEDIISMINDMGITVAENAPDADELMQETT--T---DD
DAAEAAAAA---------L--ATVDKEIGRTTDPVRMYMREMGTVELLTREGEILIAKRIEEGINQVQLSVAEYPEAIAELLEQWDKFEAEEIRLSDIVS
GFYDPNALEEDEGFPISA---T-------HV---DDSDDSDDGDSGPD-------PEVAREHFEKLRALYNHAREVFET-----------KGRSHPDADQ
AIQDIGELFRMFKLVPKQFDRMVNNMRAMMDKVRVQERIIMKAVQVAKVPKKTFVKHFANNETDMAWIDAEISAG-EKYSEKLEEVRPEIERCINKLKAI
EESTGLTVERIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIESPIDSATMESLRAATNEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDLLKSFLD-
>tr|A0A0R0CL89|A0A0R0CL89_9GAMM RNA polymerase subunit sigma-70 OS=Stenotrophomonas humi GN=ABB26_03615 PE=4 SV=1
-------------------MANERPAQQNDIKLLISKGLEQGYLTYAEVNDHLPDDM--PEQIEDIIGLITGMGIDVHEVAPDADTLLSDGNTGN-REDD
TAAEEAAAA---------L--TALDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQAALGTFPLAVESVLADYETHKEGKKRLAEVIV
GFNDLVEEVPAPAVAEDT---S---------EADGDEAEEEAGPTGPD-------PLEVARRMELLASDMAKFKKAHAKG----------DV--K-AMAK
LREELSATFVTLKLPLPLTDVLVRLLRDTMGKVKAQERRVLHATITARMPRKDFIRSWEGNQTNLEWVEDAIKRKQ-KWSSALRDVKDQIVAEQQATIDL
EKSAQLSLDELKEISRVMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIENTVNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0B1Q008|A0A0B1Q008_9GAMM RNA polymerase sigma factor RpoD OS=Halomonas hydrothermalis GN=rpoD PE=3 SV=1
--------------------MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIGMINDMGISVVEEAPDEDTLMSDHSA------E
SAAEEAVAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGTREVMSALAYLPGAVASILEAYDATQDEPGRLSDLFS
GFIDPDEGIPGVAEAEAP---E-------PEDDDDDDEDTTASEGGPD-------PEEAKARFEQIREQNAAVEAALAK-----------FGRGSSELKA
EQARLAELFSPIKLVPKHFERLVGQIRISVEQVRAQEKAVMQCVKKAKVPRKTFIKSFPGHESDSSWLDAFQEAQ-PKYADRLEPLRADIARSQRKIAFE
EDMVQLTVADLKEVNRKLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTMLLPIDMATGEGLIEATRNV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEPLRSFLD-
>tr|N9VMI3|N9VMI3_9GAMM RNA polymerase sigma factor RpoD OS=Aeromonas diversa CDC 2478-85 GN=rpoD PE=3 SV=1
----------------------MEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDI--SDQIEDIIQMINDMGIQVVENAPDADDLMSDAT--A---DE
DAAEAAAQA---------L--ASVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSSVAEYPEAITYLLEQYDKFEAEQLRLSDIIS
GFVNPDEAD---EMGPTA---T-------HIEDEEGDGNDDDGDGGPD-------PEVAREKFAELRAQYEITRQSIRS-----------NGRAHEETQA
AIAQLADVFRQFRLMPKQFDRLVNNMREMMERVRVQERLILKCVEQAKMPKKTFVSAFTNNECETAWFEYQKQAG-KAWSAPLAAMEDEVLRSIGKLQQI
EEETGLSIAQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAMRMGMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLALPADAATSESLRNATREV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|A0A0F9VRX4|A0A0F9VRX4_9ZZZZ Uncharacterized protein OS=marine sediment metagenome GN=LCGC14_0059690 PE=3 SV=1
------------------MSDSRLSSPQSGLKALIAKGKEQGYLTYAEVNDHLPESI--PDQVEDIIQMINDMGIKVFETAPDADTLLNDGDESG---DE
LAAAEAAAA---------L--AAVENEAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGLRELMKSMASFPGTVAYVLNEYDQVTAEERRLTDVIT
GYLEVDDPELPAAGSQDA---A-------DTDSVIDGADDEETTSGPD-------PEEARLRFSDLRTQYELTEKLISK-----------HGRTHKKSLA
ELDTLGDMFKTFKVTPKLFEVLVNQARAALFRVRRHERAIMACVRTAGMPRKTFVTTFPGSEVDEKWINQFAKGK-EPWVARLKDVTDDVRRSQRKLQAM
QEESGLTVAEIKEINRGMSIGEAKSRRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMVHEKGREPTPEELGERMEMTEDKVRRVLKIAKEPISMETPIGDDEDSHLGDFIEDSTVESPVDSSIEEGLREATREV
LNSLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLD-
>tr|A0A0R2XJJ6|A0A0R2XJJ6_9GAMM RNA polymerase subunit sigma-70 OS=OM182 bacterium BACL3 MAG-120531-bin86 GN=ABS26_00855 PE=4 SV=1
--------------------MADLLPKQSNLKILIAKGKEQGYLTYSEVNDHLPESI--PDQVEDIIQMINDMGIKVFETAPDADALLNDDGDSG---DD
VAAAEAAAA---------L--AAVENEAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGLRELMKAMAYFPGTVEHVLNEYALVDSEERRLNELIT
GYLDVSDEEIPVGAPASA---K-------DD-----NDDDEEATVGPD-------PEEAKLRFTALRKQFTRTSNSVAK-----------HGRDDDKAQK
ELEKLGELFKSFKLTPRQFEPLLSHIRAVLTRVRRHERHIMSCVRGTKMPRKDFIESFPGNETNERWVANMVRRK-KPYSELMGNVKVEILRAQKKLRLL
EEEAGLDIATIKDINRQMSIGEAKSRRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMVHEKGREPTPEELGERMDMSEEKVRRVLKIAKEPISMETPIGDDEDSHLGDFIEDSTVDSPVDSSIEEGLREATKDV
LGSLTQREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLD-
>tr|Z5XVC5|Z5XVC5_9GAMM RNA polymerase sigma factor RpoD OS=Pseudoalteromonas lipolytica SCSIO 04301 GN=rpoD PE=3 SV=1
----------------------MDPTPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDI--SDQVEDIISMINDMGIKVSENAPDADELMQETT--T---DE
DAAEAAAAA---------L--ATVEKEIGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINQVQISVAEYPEAITYLLEQWDKFEAEEMRLSDIIS
GFFDPNN---EDESQISA---T-------HI-DDDDSDDDADGDTGPD-------PEEARVHFEHLRELYNKARDTFEA-----------KGRSHPDSQA
AIFEIGELFKTFKLVPKQFDRMVNNMREMMDRVRVQERLIMKAVQIAKLPKKNFVKHFANNETDTAWIDLEIAAN-EKYSVALEEVKPEIIRCISKLSAI
EESTGLSIERIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIDSPIDSATMESLRGATNDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDLLKSFLD-
>tr|D0Z092|D0Z092_PHODD RNA polymerase sigma factor RpoD OS=Photobacterium damselae subsp. damselae CIP 102761 GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDI--SDQVEDIIQMINDMGIKVVETAPDADELMTED--NA---DE
DAIEAAAQA---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPKAISQLLDMFDKVEADELRLTDIIS
GFVDPNEEET---AAPTA---T-------HIEDEDGDSSDDSDDNNID-------PEVAREKFTELRQSYEKMALAIDT-----------HGRNHPTAEL
AVDELSEIFKQFRLVPKQFDKLIGSLRDSMDRVRTNERLIMRCVDNSKMPKKTFINLFAGNEASSEWIDEALNSG-KPYAERLKTYEEELRRCSTKLRLL
EEETGLSIERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAATQTNLRAATNEV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDVLRSFLD-
>tr|A0A078ME43|A0A078ME43_9PSED RNA polymerase sigma factor RpoD OS=Pseudomonas sp. 12M76_air GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGITVFETAPDADALLADNDA-----DE
AAAEEAAAA---------L--AAVESDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMAAISMFPGTVEGIITEYQRIAEEGGRLSDIFS
GYIDPDDDGMSGTDNAIV---P-------GEDEETEEDEAEEGDGGPD-------PELARQRFGAINEQLQKVRKALKK-----------HGRHSPEGVA
ELEALAQLFMPIKLVPKQYDALVVRVRSTQDHIRAQERAIMQCVRDARMPRADFLRSFPGNETNEGWIDSLLADKP-RYAAELEAVKADVLRAQKKLIAL
EEDAQLSIADVKDINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGAMESPIDSATVESLKEATREV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLD-
>tr|A0A081NET4|A0A081NET4_9GAMM RNA polymerase sigma factor RpoD OS=Endozoicomonas numazuensis GN=rpoD PE=3 SV=1
--------------------MSANSQQQSRLKELISRGKEQGYLTYAEVNDHLPEDI--PDQVEDIIRMINDMGITVYETAPDADTLLAEADT-----DE
AAAEEAAAA---------L--AAVEQEAGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGLREVMSALAKFPGSVQIVLDEYDRIIEEEGRLTDLIS
GYIDPDSDPVPAPPVVET---I-------QE--SDDDDDDDEDAGGLD-------PEEAAERFGALRAGHEKVLSTLEK-----------HDFGSKEAKA
AMEELTEAFMPLKLVPRIFDMLVFRIRNTLDIIRRNERAIMQCVRRAKMPRKIFLSTFPGNETSLKWIDDVTSGSA-GYSDAINNYRDEIVRSQKKLITI
EKEFGCTLVQIKDINRRMSLGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAIRMEMPEDKIRKVLKISKEPISMETPIGDDEDSHLGDFIEDATIQSPIDRATGTGLKESTRNV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLD-
>tr|A0A081KG86|A0A081KG86_9GAMM RNA polymerase sigma factor RpoD OS=Endozoicomonas elysicola GN=rpoD PE=3 SV=1
--------------------MSANSQQQSRLKELIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIRMINDMGISVYETAPDADTLMAEADT-----DE
AAAEEAAAA---------L--AAVEQEAGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGWREVMSALAQFPGSAQIVLDEYDRLTEEEGRLTDIIS
GYIDPDDDTPIAPPTIEE---V-------TIENDDEDSEEDEADSGLD-------PEEAKERFTLLREALEKTTAIIAS-------------HGRENSQA
ALTELAEAFMPLKLVPRLFDMLVFRIRNAVERIRDNERSVMQCVRKSKMPRKIFLKAFPGNETNLEWIDELASGSG-GYAEALQNYRDEIIRAQKKLTNI
EKEFGLSLVQIKDINRKMSLGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAIRMEMPEDKIRKVLKISKEPISMETPIGDDEDSHLGDFIEDATMQSPIDRATGEGLRESTRTV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLD-
>tr|A0A081N369|A0A081N369_9GAMM RNA polymerase sigma factor RpoD OS=Endozoicomonas montiporae GN=rpoD PE=3 SV=1
-------------------MS-ANSQQQSRLKELISRGKEQGYLTYAEVNDHLPEDI--PDQVEDIIRMINDMGITVYETAPDADTLMAEAET------E
AAVEEAAAA---------L--AAVEQEAGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGLREVMSALSQFPGSVQIVLDEYDRINEEEGRLTDLIS
GYIDPDSDVTPPPAAPIP---S-------VEDDENEDDEDDEEPGGLD-------PEEARERFEALQVKHEQMINVLAE-----------HERGTQAAKQ
ALTELAEPFMPLKLVPRIFDMLVFRIRNTLENIRSNERAIMQCVRRSKMPRKIFLKTFPGNETNLEWVEQITAGS-AAYSENIIAYRDEIIRAQKKLASI
EKDYGITLNQIKDINRKMSLGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAVRMEMPEDKIRKVLKISKEPISMETPIGDDEDSHLGDFIEDATIQSPIDRATGSGLKESTRQV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLD-
>tr|M5DPG8|M5DPG8_9GAMM RNA polymerase sigma factor RpoD OS=Thalassolituus oleivorans MIL-1 GN=rpoD PE=3 SV=1
---------------------MSANTQQSRLKELIAKGKEQGYLTYAQVNDHLPDDI--PDQVEDIIRMINDIGIPVSEVAPDGDSLMSDAA-------D
AAAEEAAAA---------L--ALVDSDVGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIREVMSALAYFPGAVQTIMNAFKEAEEDPNRVGDIFS
GFIDPSDEDPEPGVQAGA---A-------APSDDDDDSDTESEDTGID-------LTEVIRRFDEIRDANIDMVAAIEK-----------HGRASKQAEE
AISRLAELFAPIKLTPKHFEALVNGAREALDAIRNQERQIMVMTRKCGMNRKDFITGYQGNETNNQWITDLIEAG-HAYSDKLDTYRFDIFRAQKKIKSV
EDRVNLSIAEIKEVNRRVSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTQSESPMDTATAEGLTEATRSV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFID-
>tr|A0A0F9YTG0|A0A0F9YTG0_9ZZZZ Uncharacterized protein OS=marine sediment metagenome GN=LCGC14_0047840 PE=3 SV=1
--------------------MSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGINVFETAPDADALLADNDA-----DE
SAAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMAAISMFPGTVDGILADYARVTEDGGRLSEIFS
GYIDPDDDGLSGTDNAAI---P-------SADDSNDDDSEDEVDTGPD-------PEVARMRFTAIGDQLEKVKKVLKK-----------NPRSSSKVIA
ELDALALLFMPIKLIPKQYEALVVRVRGAQDQIRKLERAIMQCVRDARMPRTDFLRSFPGNEVDQGWVDSLLAGKP-RYAEALEAVKPDILRAQKKLAAM
ELEAQLTVSEVKDINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTMESPIDSATVENLKEATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLD-
>tr|G2DCQ8|G2DCQ8_9GAMM RNA polymerase sigma factor RpoD OS=endosymbiont of Riftia pachyptila (vent Ph05) GN=rpoD PE=3 SV=1
-----------------RLKMNQE-QQRSQLKQLIAKGKEQGFLTYAEVNDHLPEGI--PEQIEDIVRMINDMGITVHETAPDLEDKLSDEAVTS----D
DAAEEAAAA---------L--ASVDSEFGRTTDPVRMYMREMGTVELLTREGELRIAKRIEDGLKQVSAALATFPVTIEMLHSMLTKVGEGEKRMADVIN
GFIDPNETDEIPIPRPPR---A-------K--DSGDEEDEEPVDTGPD-------PEEVAAKTKELGKRYNALCSALKK-----------HGRNNPKTQK
ALEACAESFLEFKLVPNAFNHLVASLRDTIARIRAQERIIMNCVDRARMPRKEFIASFPDNETNPDWLQQQLDAG-KSYSEPLQEYADDIARAQKRLITL
KQECQLTISDIKEINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSGVVSPVDSATSEGLREATQNM
LSGLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERMRSFLD-
>tr|W0DX26|W0DX26_9GAMM RNA polymerase sigma factor RpoD OS=Thioalkalimicrobium aerophilum AL3 GN=rpoD PE=3 SV=1
---------------------MTKVERKQQLIDLIERAKDLGYLTYADVNDVLPDDIE-EDQLSQVLTILGDFGIPLFDTAPEEDELTKEGGA----FDE
AAAEAAILA---------L--AEVDSEFGRTTDPVRMYMREMGSVELLTRKGEIDIAKRIESNIRDMLDSLSKYPMCAEKILKAFQKMDDGEGKLADVIQ
GFIDPNDLEEVEVEDLN----------------ADSDNNAEPKDDSIDPALIEA-------FLAELEKLHRDAVKAEDT-----------HGSSDPKAKQ
KRQLVVDHLRTVKLVPLFTNGVIRDIKGKIAAIREQERVIVNVVRKVKIPRTRFVELFVDNEANPQLIDMLIA-EYPDKAGLLDEVRLDVKRAQKRLALI
EKSEKMAISYYKKVYKDLSKSESQARAAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRIQRQLLQKMGREPTPEELAEEMEMPEDKIRKVMKIAKEPISMETPIGDDEDSSLGDFIEDSNILSPSDSADLEGMSETVREM
LSTLTPREAKVLRMRFGLGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAERLRSFLD-
>tr|S6BAS4|S6BAS4_9GAMM RNA polymerase sigma factor RpoD OS=endosymbiont of unidentified scaly snail isolate Monju GN=rpoD PE=3 SV=1
--------------------MNQEQQEQSSIRDLIAKGKEQGYLTYAEVNDHLPDSI--PEQIEDIVRIINDMGISVYETPPEADEALSDAAVST----D
DAAEAAAAA---------L--ASVDSEFGRTTDPVRMYMREMGTVELLTREGELRIAKRIEDGLNQVGYAIDTFPSAVAHLLQRFEDVKNEEARLADVVA
GFKLPDVGDE--PPV--------------P----QEKSDDDVEDTGID-------LNEVEDKRKALEKAYKAWTRVLAK-----------EGNSDK-ARK
GAEKCAECVMEFRLAPPLFNELTGMLRDIVNQIREHERAVLGCVNEAGMPRKHFITSFPKNETNLDWLAEQRKLK-EPWAAKLEPLAEEIERAQRKLAEI
EQHCQLSISDIKETNRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEMGREPTPEELAERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQQAVSPVEAATMENLREATQNM
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEKLRSFLD-
>tr|W0TS19|W0TS19_9GAMM RNA polymerase sigma factor RpoD OS=Thiolapillus brandeum GN=rpoD PE=3 SV=1
---------------------MDQQQSQSRIKDLIIKGKEQGFLTYAEVNDHLPDTI--SDQIEDIIRMINEMGIPVYETPPDKDDTINADAVPT----E
ETAEAAALA---------L--ASVDSEFGRTTDPVRMYMREMGTVELLTREGELHIAKRIEDGLNQVAAALATFPPAVEHLVDRLAAAAAEDAKMSDIII
GLIDPNEAEITTPPAPPS---A-------K----KDENGDDIVDTGPD-------PQLIIDKGKELTKAFNSWKRHLDK-----------HGNDAK-AKK
LNRKIVDIFAELKLNPQLFIVMGNTLHDTVNGVREQERIILNCVNQAGMPRRDFITNFPKNETNLNWVKEQCKGK-VPYKEKLMERSEEITRSQRKLATI
EQNCRMSIADIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEKGREPTPEELSERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQGAISPIDSATMEGLRESTQNM
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEKMRSFLD-
>tr|A0A0A6S4X5|A0A0A6S4X5_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Thiomargarita nelsonii GN=rpoD PE=3 SV=1
---------------------MNQDQQQSKLKSLIAKGKEQGFLTYHEVNDHLPDDI--TDQIDNIINMINDMGISVHEFAPDADTLITDAPVA----ED
-AAEEAAAA---------L--ANVDSEFGRTTDPVRMYMREMGSVELLTRDGEIKIAKQIEEGLSKALSALATHPDIVAVFLKYYEKVETGEFKLSELIS
GMKDSGLSVEK---ESDM------------TDD----EDAILDENALP-------AEEARNSFNILRDLHTRLMHAEAT-----------HGTQSAEYMQ
LRKEVAENFLQFKLVPRMIDDLTAKLRHTVHLIREQEYKIRDCIGKVGMNKKEFITSFKNHATNPHWVALLLNTGK-PYVNILKQYREELVQAQEKLIEL
ERKNSLKITEIKNINRHMSIGEAKARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQILQQKGRDATPEELAASLEITEEKVRKVLRISKEPISMETPIGDDEESHLGDFIEDTSMTPPVDAATFEGLRRATHDM
LQGLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERMRSFID-
>tr|H8Z3Y7|H8Z3Y7_9GAMM RNA polymerase sigma factor RpoD OS=Thiorhodovibrio sp. 970 GN=rpoD PE=3 SV=1
--------------------MDQEQHQASQLKQLIAKGKDQGFLTYTEVNDHLPDGI--PEQIEDIVRMINDMGITVHETAPSEVDQLSDSAV-A----D
EAAEAAAAA---------L--ASVDSEFGRTTDPVRMYMREMGTVELLTREGELRIAKRIEEGLNQVLQALSLYPKTVGMLLELIEQAEREEIRITDVIS
GFDDGSDEIAQPINKGAA---K-------E-DAESSEEEAEVIDTGPD-------PEEFAQRAKALRDSYERLILCLHD-----------YGRDDDRTRY
AGERVSEEFLGFKLVAGVFNDLIRVLRQTIERIRAQERHIMGCIDGARMPRKVFIDSFPDNETNAGWLDQHLASS-AKYAGRLGEYAEEVRRAQRRLMEL
EEENVLSISEIKEINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMVQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTVISPVDSATAEGLREATQNM
LASLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLRSFID-
>tr|V4JHE7|V4JHE7_9GAMM RNA polymerase sigma factor RpoD OS=uncultured Thiohalocapsa sp. PB-PSB1 GN=rpoD PE=3 SV=1
--------------------MDQDQHQASQLKQLIARGKEQGFLTYIEVNDHLPDGI--PEQIEDIVRMINDMGIMVHESAPAEIDPSDDSAV-A----D
EAAEAAAAA---------L--ASVDSEFGRTTDPVRMYMREMGTVELLTREGELRIAKRIEDGLNQVLAALSIYPRAIEGLLTIFAQVENEQRRLSDAIS
GFNDDDEEPASATPAAST---A-------S-DSNSDDDDDTVVDTGPD-------PVEVAQRVESLRKHFNEFIELLRE-----------YGRDDERSRA
AMVRVSEEFLQFKLVANVFHVLVELLRGTIERIRSQERLIMSCIDSASMPRKEFINSFPDNETNPEWVRNLIDAG-KPYSARLAAVEGEVRRAQRRLQDL
ERENVLTIGEIKEINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEMGREATPEELAERMEMPEEKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDAGVISPVDSATAEGLREATQNM
LASLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEKLRSFLD-
>tr|A0A0F7JYU8|A0A0F7JYU8_9GAMM RNA polymerase sigma factor RpoD OS=Sedimenticola sp. SIP-G1 GN=rpoD PE=3 SV=1
--------------------MDKV-QQQSQLKQLIAKGKEQGFLTYAEVNDHLPDGI--PEQIEDIIRMINDMGIQVHESAPDADDQMSDSAVSA----E
DAAEEAAAA---------L--ASVDSDFGRTTDPVRMYMREMGTVELLTREGELKIAKRIEEGQNQVLTALSTYPDTINTVIELLEKVDAEEMRLTDVIV
GFAQTEEEEAALAAPAPS---P-------K-DDEDDETEEEDPNRGPD-------PEEAARRSEALKKAFKTHNTLLEK-----------HGREHKKTAA
AAEALTTAFMDFRYSPKVFATLVENLREAIAFVRSQERAIMDCVNTAHMPRKEFITSFPDNETDINWIDRQIEKG-QDYSANLEEFKEEVLRAQRKLLEL
EQRCKLTISEIKEINRQMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMVQEMGREATPEELAERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSGVISPIDSATGEGLREATQNM
LCGLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSENLRSFLD-
>tr|A0A0C4WJ98|A0A0C4WJ98_9GAMM RNA polymerase sigma factor RpoD OS=Azotobacter chroococcum NCIMB 8003 GN=rpoD PE=3 SV=1
--------------------MSVKAQQQSRIKELIARGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGINVFESAPDTDALLAEADT-----DE
AAAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAHFPGTVDSIIAEYQRVASEGGRLSDILS
GYIDPDDDSAVPAEAEVP---V-------DLEGEGDSSEEEEGDGGPD-------PEVARLRFGAVAEQLDRAREILRQ-----------HGRGSAQAME
ELKALASLFMPIKLVPKQYDALVDQVRDSLSRVRTQERAIMQCVRDARMPRADFLRQFPGNEVDQDWVDFLAKGKT-KYAEALGKLADDIKQCQQKLIDL
EQEVGLTIAEIKDINRQMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|A0A0R0C4F3|A0A0R0C4F3_9GAMM RNA polymerase subunit sigma-70 OS=Stenotrophomonas koreensis GN=ABB25_02030 PE=4 SV=1
-------------------MANERPAQHSDIKKLISKGLEQGYLTYAEVNDHLPDDM--PEQIEDIIGLITGMGIDVHEVAPDADTLLNDGSTGN-REDD
TAAEEAAAA---------L--TALDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQAALGTFPITVEALLADYEAHKEGNKRLAEVIV
GFNDLSADEPAPPAAVVS---D---------DDDVADAEEEAGPTGPD-------PAEVAARMEELAAAHGRFLKAQAKG----------ET--PAVLAK
LREETSAIFVTLKLPLPLTDVLVGMLRNTMTAVKTQERRVLHATVTARMPRKDFIRSWEGNQTNLEWVEDALKRKQ-KWSSALREVKDQIIAEQLATQQV
EKDTRLTLDELKEISKVMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVMSPVDATTDINLQETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEQLRSFLD-
>tr|T1C3Y2|T1C3Y2_9ZZZZ RNA polymerase, sigma 70 subunit, RpoD OS=mine drainage metagenome GN=B1B_01506 PE=3 SV=1
----------------------MSDDRNTQLRQLIAKGKEQGYLTYSEVNDFLPRDIVDPEQLDEIISVINDMGIAVHDTVPDAALELLLADHQ-VNEDD
EAMEEAAAA---------L--ASVDSALGRTTDPVRMYMREMGQVDLLTREGEIGIAKRIEEGLNQKFAALATFPGVIGRFLAEHELVMSGQIKLAELIQ
GFRDPESGAPLSDDNGQP---L-------PIEDELPPVVDEEDLPAVGP--NPELV---SEMIRKLERAYAKACRALSA-------------SDVRTFKT
L-QQAAIALQRFRLTPRTMETLTQTLRQTIESIRKIEREIMHCVERVGMPKKDFIKSFPQRETTTTWIDAHIR-AKRKWSSALREIKPDVLGLQERLIAI
ETLHHLKIAEIKEIYRQMMIGETKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQLLQEKGREPTPDELAKRMDMPEDKVRKVMRIAKEPISMETPVSDDEDSHLGDFIEDVNMPAPIEQATSESLRHTTHSV
LSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRATRLKSFID-
>tr|W0R4F9|W0R4F9_BIBTR RNA polymerase sigma factor RpoD OS=Bibersteinia trehalosi USDA-ARS-USMARC-190 GN=rpoD PE=3 SV=1
-----------------MEQQSQFEEQESQLEQLIATGREQGYLTISEVHDHLPEEL--ADQIEDIIQMINDMGIKVLETAPDADELLNGNIAD-----E
DVVEE-ATKV--------L--STVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAVAEYPEALTELIARYAQVEEGTIRLSDLVT
AFVDPNAEEAAPIDDIEA---D-------L-DEDGDSSADSSDDNSID-------PELAREKFNALKEQHEKALAAIQK-----------HGRHKKQARD
QIQALSDIFREFRLVPKQFDLLVETMQNMMKQVRAQERQIMRAVEYANMKKADFLKAFQGNETSDAWIEKAINAK-KGGVPKLADYADNIRNNIVNLQKL
EENTGLTIAQIREIGGRIASGELKARKAKTEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAEKMGMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDSTLELPLDSATAESLRIATNEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A086C201|A0A086C201_PSEAI RNA polymerase sigma factor RpoD OS=Pseudomonas aeruginosa VRFPA01 GN=rpoD PE=3 SV=1
-----------------MRNRSGKAQQQSRLKELIARGREQGYLTYAEVNDHLPEDI--PEQVEDIIRMINDMGINVFETAPDADALLAEADT-----DE
AAAEEAAAA---------L--AAVESDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAQFPGTVDSILADYNRIVAEGGRLSDVLS
GYIDPDDGSLPAE-EVEP---V-------NLESDDNSDSDDEGDGGPD-------PEEARLRFTAVSEQLDKAKKALKK-----------HGRGSKQATA
ELTGLAELFMPIKLVPKQFDALVARVRSALEGVRAQERAIMQCVRDARMPRADFLRLFPNHETDEKWVDSVLKSKP-KYAEAIERLRDDILRNQQKLAAL
ESEVELTVAEIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|H8WEF3|H8WEF3_MARHY RNA polymerase sigma factor RpoD OS=Marinobacter hydrocarbonoclasticus ATCC 49840 GN=rpoD PE=3 SV=1
-------------------MSMSGNSQKSRLKDLIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIRMINDMGIQVCEETPDADTLMTEGDS-T---DE
AAAAEAAAA---------L--AAVETDAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIRDVMAAVAHFPGTAGTVIQAYDRII-EEGRISDIVT
GFLDPDDAEPFMGEDT-----S-------TEDDDDDTSSEDDNDNGPD-------PEETRLRFELLKEKLDAAEKALAK-----------HGRGHKKTQE
ALNELGQVFAPFKLANKAFDELVNVVRSTNDLVRENERAIMQCVRDCKMPRKDFIKWFPGNETDLEWAGEIAATK-KPYAAAIGERVDEIVRLQKRIQNV
QTEVDLDVADIKEINRRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATAEGLREATRSV
LAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFID-
>tr|A4BE35|A4BE35_9GAMM RNA polymerase sigma factor RpoD OS=Reinekea blandensis MED297 GN=rpoD PE=3 SV=1
--------------------MAEKSQRQSRLKELIAKGKEQGYLTFAEVNDHLPEEI--PDQVEDIIAMINDIGIEVFEQAPDADQLLSESDQ-S---DE
DATEEAAAA---------L--AAVETDTGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGTREVMQAMAFYPGVIDSMIGAYENTLEEGGRLSDILT
SFQDPDDDDPLPAAD------S-------PDDDDDDDDSDDEVDNGPD-------PELARERFTLLKEQLESAKALIEE-----------KGRYSKEANA
ALSSMGETFSCFKLTPKAFDDAIEPIKATVEEIRSQERKVIACVRTLNMPRKAFIDAFVGHETEDEWLNELLE-N-PKYADEAFRYEVELRRAQRKLRNI
QKNTGITLAEVKDIHRRISIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMDMPEDKIRKVLKISKEPISLETPIGDDEDSSLGDFIEDNTMILPVNSATSTGLRDATTEV
LAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFID-
>tr|A0A086D2J5|A0A086D2J5_9GAMM RNA polymerase sigma factor RpoD OS=Gammaproteobacteria bacterium MFB021 GN=rpoD PE=3 SV=1
--------------------MAG-HAQQSRLKELIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIAMINDMGINVVEEAPDEDTLMSDNST------E
SAAEEAVAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLREVMSSLAYLPGAVDSILAAYDQTQDEPGRLSDLFS
GFIDPDEGIPGVAEVEMP---E-------VEKEDEEDSDDNSSEGGPD-------PEEARVRFEQIREQNEAAKAAVAK-----------HGFDAEAAKA
ELARLAELFSPIKLSPKHFERLVGQVRISVEQVREQEKAIMQFVKQGKVPRKTFISAFLGNEASDAWFDEFVAKH-AKYADRLTPFRGDVQRAQRKIGFE
EEMVQLQVSQLKEVNRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMVLPIDSATGEGLIEATRNV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEPLRSFLD-
>tr|R4VHV9|R4VHV9_9GAMM RNA polymerase sigma factor RpoD OS=Spiribacter salinus M19-40 GN=rpoD PE=3 SV=1
---------------------MAAQDQQSQIRELIARGKEQGYLTYAEVNDHLPDDI--PEQIEDIIGMINDMGIPVHETAPDADTLLSDGAVST---ED
E-AEEAAAA---------L--AAVDAEFGRTTDPVRMYMREMGTVELLTREGEIELAKRIEDGLDQVLRALSGYPESSKTMVALHHGIQNGELRLGDVVA
GFRDITELVDNVPEIVAT---H-------Q-AAENDTEAPAVADTGPD-------PERAAQIFDRIEVLHNEMLEILDK-----------EGPDSPRLGD
LREEMTGLFLAFKFVPKVIEGLANNLRKAVEGVRAAEREVMRATKQAGMPRKDFIASFPGHETDPAWIDTVIKA--KPYSAKLSEHRQALLDEQSELTQI
RELTGLPPAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPHPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSVMSPVDSATREGLRESVREV
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDSLRSFLD-
>tr|Q31EM5|Q31EM5_THICR RNA polymerase sigma factor RpoD OS=Thiomicrospira crunogena (strain XCL-2) GN=rpoD PE=3 SV=1
---------------------MTRVERKQQLIDLIERAKDLGYLTFSDVNDVLPDDIE-EDQLGQVLTILRDFGIQLFESAPDADELTKEGET----FDD
AAAEAAILA---------L--AEVDAEFGRTTDPVRMYMREMGSVELLTRQGEVEIAKRIEYGIRDMLEAMAKYPQVAMELLASFSRIEDGEGKTADLIQ
GFIRPADLVDIPIEELS----------------PDND-SGEPKEDGINPEELDA-------FLQKLAKLNADTLKAEEK-----------NGYSDPKSVK
KRAEIVALLATVKLSPVFVNRMIKGIKLRVSSIREQERNVVNVMRQVGVPRPSFLKLFVGSETDYDVLDRLKE-AHPDKADALEEVRADVKRAQKRLAMI
EKAEKMPINQYKTIYKDLSKAESIARIAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRIQRQLLQKMGREPTPEELAEEMEMPEDKVRKVMKIAKEPISMETPVGDDEDSSLGDFIEDSNILSPQDSADLEGMGETVREM
LSTLTPREAKVLRMRFGLGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAERLKSFLD-
>tr|A0A066ZQA0|A0A066ZQA0_HYDMR RNA polymerase sigma factor RpoD OS=Hydrogenovibrio marinus GN=rpoD PE=3 SV=1
---------------------MTRVERKQQLIDLIERAKELGYLTFSDVNDVLPDDIE-EDQLGQVLTILRDFGIQLFDSAPDSDELTKEGET----FDD
AAAEAAILA---------L--AEVDAEFGRTTDPVRMYMREMGSVELLTRQGEVEIAKRIENGIRDMLASMALYPAMATDLLDSFGKIDDGEGKIADLIQ
GFVRPADLVDIPVEELS----------------PDND-SGEPKEDGIDQEELDT-------FLANLGKLNEEVLKLEEK-----------NGYNDKKSVA
KRAELVEMMASVKLSPVFVNRIIKSIKSRISSIREQERNIVNVMREIGVPRPKFLEAFVGSETDYTIVDRLIE-SFPEKSEKLEASRADIKRAQKRLAMI
EKSEKMPINLFKDTYKNLSKFESQARVAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRIQRQLLQKMGREPTPEELAEEMEMPEDKVRKVMKIAKEPISMETPVGDDEDSSLGDFIEDSNILSPQDSADLEGMGETVREM
LSTLTPREAKVLRMRFGLGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAERLKSFLD-
>tr|Q0A5N1|Q0A5N1_ALKEH RNA polymerase sigma factor RpoD OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=rpoD PE=3 SV=1
----------------------MTQDQQSQIKQLIAKGKEQGFLTYAEVNDHLPDDI--PEQIEDIIGMINDMGINVHEVAPDADELLSDAAVST---ED
E-AEEAAAA---------L--AAVDAEFGRTTDPVRMYMREMGTVELLTREGEIELAKRIEEGLDQVLAALSAYPGAAAKLLDLYRKVQDGEMRLNELMG
GFRNPDEELSAYS---AD-------------KEEDEDGEEAVVDNGPD-------PEMAAELFRRLAEADQRMQEVLRR-----------QGSDSPECAE
LREQLAEIFLTFKFPPKIIDQLVDGLRRDVNVLRRNERHILKCTKAG-MPRKTFVRSFISRETDPGWLDEMLAS--EPWAQRLAEHEDDIRRAQQVLIDA
ERKVGMTIGEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPSPDELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDINAMSPVDSATREGLRESVKGV
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEGLRSFLD-
>tr|U2EH58|U2EH58_9GAMM RNA polymerase sigma factor RpoD OS=Salinisphaera shabanensis E1L3A GN=rpoD PE=3 SV=1
----------------------MSKDKKSQLRLLIAHGKQKGYLTYAEVNDTLPDDI--PEQIEDIVNMISDMGITVHESAPEDDSLMNENTVN---EDD
DDAEEAAAT---------L--AALDPQFGRTTDPVRMYMREMGTVELLDRQGEIRIAKRIEEGLAEMMFSLAYFPATTGRLLELWSQVESDDKRLTDVLV
GFVDPDTGDPIVN-EDEA-------------SDNDDDEGSAPSNDGPD-------PEEAKAQFDKLKSLHEAAVATLDK-----------HGREHEATEE
ALNALATHFMRFKLVPKTADDLTLQLRTTMLDIRSIEREMLQCVTEAGMPRRDFVRQLPDNLTSEVWLDKLIRAKR-RYSSTIAGRREELVRAQGRIREI
ESENGLNVNHIKEINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNAVAPDDSASGESLREATHNT
LASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRATFLKSFLD-
>tr|B5JTE9|B5JTE9_9GAMM RNA polymerase sigma factor RpoD OS=gamma proteobacterium HTCC5015 GN=rpoD PE=3 SV=1
-----------------QQGNKVTKEQQSQIKLLIAKGKEQGYLTFAEVNDHLPNEI--PEQVEDIIQMINDMGIKVLESAPDAEELMMEG----D-TND
EDADEAVAN---------L--ANNDSDFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRQVVTALSTYPHAVNALFETYDGIIEREGRITDLIG
GFIDPDDDEVQNP-NAP-----------------KNEDEEAEEDTGPD-------LEEVAKHINQMRKQYEKATKKKD-G----------I---YQREAK
ASEKLSELFMQLKLDNNFINREIQLVRDVVGRVRQLERDVMTCVHRCGMPRKTFIDSFPENETNPNWVKDHSKSKK-FGEK-IAAHANDLNELQQHLIRI
EQESGLSISDLKEINRKMSIGQAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPVGDDEDSSLGDFLQDVNAESPIEAAVGEGLSESTRDI
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDSLRSFLD-
>tr|A1WW15|A1WW15_HALHL RNA polymerase sigma factor RpoD OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpoD PE=3 SV=1
----------------------MSQDQQSQIKQLIAKGKEQGFLTYAEVNDHLPDDI--PDQIDDIIGMINDMGINVHETAPDSDELLAETTVAT---ED
E-AEEAAAA---------L--AAVDAEFGRTTDPVRMYMREMGSVELLTREGEIQLAKRIEDGLDRALAALSSYPEAARQLIMLYDRAQEGEARLTDIVA
GFRDREDDSEQPPEAPAA-------------AAADEDEEATSAETGPD-------PEAVAELFERLRAAYNEMQEVLAT-----------EGSASPRIAE
LRGELEEVFLSIKFTPKVVDAVADRLRGTVDTIRAREREIMNCTREGRMARKEFVKSFQDRETDPTWLDDLLAE--EERAERLQPHAEAIRKAQSELKEI
ADKNGLSVAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSVTSPVDSATSEGLRESVREV
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDGLRSFLE-
>tr|A4BN42|A4BN42_9GAMM RNA polymerase sigma factor RpoD OS=Nitrococcus mobilis Nb-231 GN=rpoD PE=3 SV=1
---------------------MTIQDQQSQIRELIARGKEQGYLTYAEVNDHLPDDI--PEQIEDIIGMINDMGISVHETAPDSDTLLSDAAVAT---ED
E-AEEAAAA---------L--ASVDAEFGRTTDPVRMYMREMGTVELLTREGEIELAKRIEEGLDQVLRALSAYPESARTLCSLHRHVEAGRLRLQEILA
GFRGLEDELDGGADAVDV---S-------V-DEDEESASNAAADSGPN-------PEQAVQLFNRIRELHEALLIALQE-----------RGSGSEQCRE
LREEMGNLFLSMKLAPKVIDGMAENLRKAVERIRRAEREVTRCVKQAGMPRKEFITLFPGRETDPSWVDELIRA--KPYSEAVAERRQMLLEAQVGLAAI
QEATGLAVSEVKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRTSRQMLQEMGREPQPDELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDAAVMSPVDSATREGLKESVREV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSESLRSFLD-
>tr|A0A084IRL7|A0A084IRL7_9GAMM RNA polymerase sigma factor RpoD OS=Salinisphaera hydrothermalis C41B8 GN=rpoD PE=3 SV=1
----------------------MSKDKKSQLRLLIAHGKQKGYLTYAEVNDTLPDDI--PEQIEDIVNMISDMGITVHEQAPDEDDLIAGNTVN---DDD
DDAEEAAAT---------L--AALDPQFGRTTDPVRMYMREMGSVELLDREGEIRIAKRIEEGLSEMMFALAYFPATTGRLIELWDQVLAEDKRLTDVLV
GFVDPDTGDPVDS-GAEE---T-------AEEDDEDEESSAPANDGPD-------PEEAKAQFAELRRLHDAAVASLEA-----------NGREHAETEA
ALSALATHFMRFKLVPKTADDLTLQLRTAMIDIRSAERDMLRCVTEAGMPRRDFVRQLPDNITNEDWLEKLIRAKR-RYSSTIASRREELVRHMNRVREI
EQESALDVNHIKEINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMEMPEEKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNAVAPDDSASGESLREATHNT
LASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRATFLKSFLD-
>tr|A0A090AM04|A0A090AM04_9GAMM RNA polymerase sigma factor RpoD OS=Thioploca ingrica GN=rpoD PE=3 SV=1
---------------------MNHEQQKSQLKLLIAKGKEQGYLTYHEVNDHLPDDI--PEQIESIINMINDMGITVHEFAPDTDSLISDAPVA----EE
-AAEEAAAA---------L--ANVDSEFGRTTDPVRMYMREMGTVDLLTREGEIKIAKRIEEGLNQALSALATHPDIIAEFLSYYDKVEIDELKLSDILT
GFIDSASEDVP---EIEI---D-------ETDDDEEVPPILGEETLLD-------MEETRSRFARLRGLYQRMLQVEVS-----------QGTQAEAYIQ
LRKDVADCFLQFKLVPRVIEELTAKLRQTVAFIREQENFIRDCILKVGMNKKEFLSSFKNQLTDPYWLPSLLNSAK-PYVTSLQQYQKELEGAQQKLIVL
EKQCRLNLVEIKDINRRMSIGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQILQEKGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSIQAPIDSATFEGLRRATQEM
LHGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|U5T0U9|U5T0U9_9GAMM RNA polymerase sigma factor RpoD OS=Spiribacter sp. UAH-SP71 GN=rpoD PE=3 SV=1
---------------------MASQDQQSQIRELIARGKEQGYLTYAEVNDHLPDDI--PDQIEDIISMINDMGIPVHETAPDADTLLSDSAVST--D--
DEAEEAAAA---------L--AAVDAEFGRTTDPVRMYMREMGTVELLTREGEIELAKRIEDGLDQVLRALSGYPESSRTMVALHRGIQNGELRLAEVVA
GFRNITELVDNVP-EVVA---R-------HQAEADEEDEVPAAETGPD-------PERAAEIFDRIEILHAELVELLEQ-----------SGPDSPRVGE
IRDEMTGLFLAIKFVPKVIDGLAANLRKAVEGVRAGEREVMRATKQGGMPRKDFIASFPGHETDTGWVDKVAAQGK-KYSSQIAQCRDALVEQQSELIRI
RELTGLPPAEIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPYPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSVMSPVDSATREGLRESVREI
LGGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDNLRGFLD-
>tr|A0A0F6TPX7|A0A0F6TPX7_9GAMM RNA polymerase sigma factor RpoD OS=Kangiella geojedonensis GN=rpoD PE=3 SV=1
------------------MSENSQQSQQSQLKLLIARGKEQGFLTYAEVNDHLPPDI--PEQIEDIIRMINDMGIQVYETTPDEDELINDDSV-T----E
DAAEEAAAA---------L--ASVDGEFGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEEGIRQVLTAVGNYPDTIRILLEEYEQYKNEFIRLTDIVT
GFLDGEEAEFVQEESEAA---Q-------IADDDEDDDDSTEVDTGPD-------PEEAEQRFSELAKQYEKTVKAIKR-----------YGRDHKSSAK
QLEAMRELFMNLKLAPRMFEYLVQNLRTKMDGIREQERYIMHAVKKSRMPRKTFITTFSGAETNPEWLDGHLAKK-SKYSEALAEFAEDIRKAQRKMQLV
EESCDLSVLEIKEANREMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPQPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIDSPVDAATGESLKEVTDEI
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRTYID-
>tr|C7R7Q3|C7R7Q3_KANKD RNA polymerase sigma factor RpoD OS=Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) GN=rpoD PE=3 SV=1
---------------------MSENSQQSQLKLLIARGKEQGYLTYAEVNDHLPPDI--PEQIEDIIRMINDMGIQVYETTPDADELMNDESV-T----E
EAAEEAAAA---------L--ASVDSEFGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEEGIRQVLGAIANYPDTIRILLEEFALYQEEQVRLTEIVT
GFSDGEEAEFVQEESEAA---Q-------IADDDDDDEEETEVDTGPD-------PEEAAARFAELKKQYDKTVKAVDK-----------YGRTHKSTIK
QLEAMKELFMQLRLAPRMFDFLVTNLRQKMDGIREQERYIMMSVNGARMPRKTFISTFSGSETDPSWIEQHVTKK-SKYSEPLAEHAEEILKAQRKLQII
EESCSLSVMEIKEANREMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPQPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIDSPVDAATGESLKEVTDEI
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRTYLD-
>tr|A0A0M1JHS8|A0A0M1JHS8_9GAMM RNA polymerase sigma factor RpoD OS=Achromatium sp. WMS3 GN=rpoD PE=3 SV=1
---------------------MEQEHQQSQLKQLIAKGKEQGFLTYTEVNDHLPPGI--SEQIEDIISMISDMGITVHETAPDIDDHLISDAISD--D--
---DAAEAA---------I--AFVDSEFGRTTDPIRMYMREMGTVELLTREGELKIAKRIEEGLNQIQASLAYYPKTIEKLLAMFEKVTLGEMRLTDIIN
GFNDATPIETDTI-EDTK---D-------TADTEDETSDEVTIDNGLD-------TEETAKRIDRLRTLYAKLTKTQKK-----------HGHKDTRTKE
LWEQISVAFLDFKIMPNVFNELVADLRTTVERIRVQEKAIMTCVEQSGMPRRTFIASFLENETNPQWITKQIATGL-AYTKPLSQLQPDIRRAQRKLLEV
ERENGISISAIKEINRNLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRIFRQIVQEMGREATPEELAVRMDMPEDKVRKVLKISREPISMETPIGDDEDSHLGDFIEDLAALSPLDAATTEGLREATHTM
LSGLTLREARVLRMRFGIDMNSDHTLEDVGKQFEVTRERIRQIEAKALRKLRHPTRSEKLRSFLE-
>tr|G7UPR1|G7UPR1_PSEUP RNA polymerase sigma factor RpoD OS=Pseudoxanthomonas spadix (strain BD-a59) GN=rpoD PE=3 SV=1
-------------------MANERPAQASDIKLLISKGLEQGYLTYAEVNDHLPDDM--PEQIEDIIGMINGMGIAVHEVAPDAETLLAGEASGN-REDE
TAAEEAAAA---------L--TSLDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGKVQASLGLLPSIIESVLEDYELHKAGKKRLAEVIV
GFNDQVDEPEPPAVVADA---V---------EVDEDAAEEEAGPTGPD-------PEEVARRMEVLASTLAKFKKGYAKA----------GA-DNKAGAK
LRAEMADMFVTLKLPLALTDTLVKNVREVLQQIKDQERRVLHSTVTAKMPRKDFIRSWEGNQTNLEWVDEALKRKQ-KWSSGLREVKDQIIAEQRATIAV
EQAMFMSLAELKDISRQMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPVENTTNINLMETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|H5TED3|H5TED3_9ALTE RNA polymerase sigma factor RpoD OS=Glaciecola punicea DSM 14233 = ACAM 611 GN=rpoD PE=3 SV=1
-----------------LRLRYNVQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPANV--SDQIEDIIRMINDMGIKVFEQAPDADELMQETT--T---DE
DAAEAAAQA---------L--ATVESEIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGINQVQCSVAEYPEAITYLLDQWDLYEAEEIRLSDIII
GFIDPNEDD---VA-PSA---T-------NV-----DEEDEEVDNSVD-------PELAREKFAALRVQYGIARDVIES-----------KGRSHKAARK
EIAALSDVFKEFRLIPKQFDRMVKNMRGMMDRVRIQERLVMKCVINAKMPRKDFIKAFAGNETSTKWLHKLLEGK-QDYVERVLEFKEEIERCVSKMNAV
EKETGLVIPDIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVTITQPLDSATGGSLKDATQEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSFLD-
>tr|A0A0E3ZRM2|A0A0E3ZRM2_PASMD RNA polymerase sigma factor RpoD OS=Pasteurella multocida subsp. multocida OH4807 GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKLLIAQGKEQGYLTYAEVNDHLPEEL--AEQIEDIIQMINDMGIQVLETAPDADDLLNEAIAD-----E
DAVEE-ATQV--------L--SSVEAEIGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEEGINEVQSAIAFYPEAITYLLEQYDLVEEGGVRLADLIT
GFVDPNAITEGDVAEIEE---S-------FDSEEENSSDDSDSDNSID-------PEVAREKFLELRTQHEKTVAIIEK-----------HGRTSKKSKD
QIQALADVFTQFRLVPKQFDTLVNLMSNMMRSVRQQERSIQKVVDKAKMPKEQFQKVFIGHENQDAWLIKAVSSG-KSWSEKLAKHEDEIRQHIDNILEI
ERQTNLTAQQIREVCERISAGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREASPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|B0USS6|B0USS6_HISS2 RNA polymerase sigma factor RpoD OS=Histophilus somni (strain 2336) GN=rpoD PE=3 SV=1
----------------------MEQNKQSQLKLLIARGKEQGYLTYAEVNDHLPEDL--ADQIEDVIQMINDMGIQVLESVPDADDLLNENITD-----E
DAVEE-ATQV--------L--SSVEAELGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEEGINEVQSAVAAYPKALNYLLEQYTLVEEGGMRLADLIT
GFVDPNAVVEEEIIEADD---I-------LTDSEDNSNVDSDSDNTIA-------PEVAREKFEALRIQHQKTLAAIEK-----------YGRSRKQAKD
HIQALADIFTQFRLVPKQFDALVNYMRDMMKSVRQHERQIQKVVDLAKMPKENFQKLFIGNESSEGWLDKLLLAR-KPWSERLIQHESAVRQSINQLLKI
EQETNLTISQIREICDKVAQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQKMGREATSEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDNTLELPLDSATAQSLRAATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|S6EQC2|S6EQC2_AVIPA RNA polymerase sigma factor RpoD OS=Avibacterium paragallinarum JF4211 GN=rpoD PE=3 SV=1
--------------------MDMEQNPQSQLKLLIAQGKEQGYLTYAEVNDHLPEEL--ADQIEDIIQMINDMGIQVLETAPDADDLLNENITD-----E
DAVEE-ATQV--------L--SSVEAEIGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEEGINEVQTAIAAYPEALNDLLRQYALVEEGGMRLADIIT
GFVDPNAVVEETTDETDV---L-------SEGDDSGTSDDSDTDNAID-------PEVAREKFTALKMQHQKTLEAIVK-----------HGRHKKQARD
QIQVLAEIFTQFRLVPKQFDVLVLAMRNMMKRVRQQERHIQKAVDNARMPKGMFQKEFIGHETKEAWLDKALNAG-KGWSEKLAQYEVQIRQSIENLIQI
EQETGLTIAQIRDICDAVSQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREASPEELAERMGMPEEKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDNTLELPLDSATVQSLKAATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A0M4L327|A0A0M4L327_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Thioglobus singularis PS1 GN=rpoD PE=3 SV=1
-------------------MKTTTEAHKIALNSLITIGKEQGYLTYSEINDLLPEDL--PEQVEPIVTILEELDIVVADEAPDADTLMQEGG--------
-SAEVAVAA---------L--AALDSEFGRTTDPVRMYMREMGVVELLEQSDEVRIAKEIEAGVYQIMQAISLYPEISDYFFKAYTRLEEGKCKMTDVVI
-YQGDAEEFEEKQALIV-----------------EELEDEEDE---FDEEYTGPDEGEVYERFDKVQKSHNSYVKSCEKN----------G--LDAKTVK
ARHKFSSCISELRLAPKLVSTMMELVSTRVAQVKKEENLIRNACLDAGMTTEVFYKSFPGNETNFDWLKTAGID--KATLKSLEKNKNEIYYSQKSLLEN
EEAMQLTIAELKEINKKLRQGDRKAKNAKSQMIEANLRLVISIAKKYANRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVRRQLLQRFGREATPEELSVEMELPEYKINKILKIAKEPLSMENPVGDDEDSTIGDFIEDEKLSSPVEVTTRESLKETTGDL
LANLSPREAKVLKMRFGIDMSTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRAHKLQSFLE-
>tr|A5CXQ9|A5CXQ9_VESOH RNA polymerase sigma factor RpoD OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=rpoD PE=3 SV=1
-------------------MKSTTKAHKQALQKLIMVGKEKGYLTYSEINDILPEDL--QEQVEPIVTILEELDITVSDTVPDADTLVESGA--------
-SAEAAIAA---------L--AALDSEFGRTTDPVRMYMREMGVVDLLEQEDEIRIAKEIEAGVFEIMQSITLYPVITDFFFKAHTRLEEGKCKMTDVII
-YQGDAEDFANKKVAF---------------------DEEYEE---IEEEYTGPDKNQVYNRFDTVLKYSKTYNKTTEQL----------G--RHKKTIK
TRQQLSKGLSDLRLAPKLVNTMIEVICNRVSQVKEQEKIIKNICLDAGINRLHFFELFSNNETNFNWLDTVKLD--EKIEKNLKDSKDKIYYAQKNLQQF
EEEMQLTIVELKKLNKMYRRGDRRAKKAKSQMIEANLRLVISIAKKYANRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVRRQLLQKFGREASSEELATEMELPEYKIIKILKIAKEPLSMETPVGDDEDSNIGDFIEDTNLSSPVEITTKESLRETTGDL
LSNLSPREAKVLKMRFGINMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRAHKLQSFLE-
>tr|D1KBJ2|D1KBJ2_9GAMM RNA polymerase sigma factor RpoD OS=uncultured SUP05 cluster bacterium GN=rpoD PE=3 SV=1
-------------------MKTTTKAHKQALQKLIMIGKEQGYLTYAEINDILPEDL--QEQVEPIVTILEELDIAVSDTVPDADTLVESGA--------
-SAEAAVAA---------L--AALDSEFGRTTDPVRMYMREMGVVDLLEQSDEIRIAKEIEAGVFEIMKSITLYPAITGFFFKAHTRLEEGKCKMTDVII
-YQGDAEDFAKKKAAF---------------------DEEYEE---MEEEYTGPDEGQVYGRFETVLKCSEAYQKTNEKH----------G--RDKKTIA
ARQQLSEGLSDLRLAPKLVSTMMEVICDRVALVKKQEKTIQSACLYAGMEREQFFKLFNDNETNFDWLKGAKLD--KKVAEALKVSKDEIYYAQKNLLEF
EEEMQLTVPELKALNKLYRRGDRRAKKAKSQMIEANLRLVISIAKKYANRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVRRQLLQKFGREATPEELAVEMELPEYKINKILKIAKEPLSMETPVGDDEDSNIGDFIEDTNLSSPVEITTRESLKETTGEL
LANLSPREAKVLKMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRAHKLQSFLE-
>tr|A0A0P0UTG4|A0A0P0UTG4_9GAMM RNA polymerase primary sigma factor OS=endosymbiont of Bathymodiolus septemdierum str. Myojin knoll GN=rpoD PE=4 SV=1
-------------------MKSTTKAHKQALQNLITVGKDKGYLTYAELNDMLPEDL--QDQIEPIVSILEELDIIVSETVPDADTLVESGA--------
-SAEAATAA---------L--AALDSEFGRTTDPVRMYMREMGVVDLLEQEDEIRIAKEIEEGIFEIMQAITLYPSITDLFFKAHMRLEEGKCKMTDVII
-YQNDAQDFAKKKAAF---------------------DDEYAD---MEEEYTGPDEDQVYLRYDKILKAAKKYEDTNKEY----------G--HDKKTIS
TRTALAKNLSDLRLAPKLVSTMVDVVCERIAKVKKQEKIIQNACLYADMERKQFFDLFTDNETNFDWLKNAKLD--KKVKDKLADSEDKIYYAQKNLKEY
EEEMQLTIAELKAINKLYRRGDRRAKTAKAQMIEANLRLVISIAKKYANRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVKRQLLQKYGREASPEELSVEMELPESKIIKILKIAKEPLSMETPVGDDEDSNIGDFIEDINLSSPVETTTKESLRETTGDL
LANLSSREAKVLKMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRAHKLASFLE-
>tr|A0A0K2YW53|A0A0K2YW53_9GAMM RNA polymerase sigma factor RpoD OS=Bathymodiolus azoricus thioautotrophic gill symbiont GN=rpoD PE=3 SV=1
-------------------MKNTTKAHKQALEKVIMLGKEQGYLTYSELNDLLPKDL--QDQIEPIKTILEELDIVVSDTIPDADTLVESGA--------
-SAEAAVAA---------L--AALDSEFGRTTDPVRMYMREMGVVDLLEQEDEIRIAKEIEAGVFEIMQAITLYPVITEQFFKAHKRLEEGKCKITDVII
-YQGDAEDFAEKKKAF---------------------DEEYEE---MEEEYAGPDEDQVYLRFDTISKCSDKYLKTNEKH----------G--RDKKTVS
ERKKLSQSLSDLRLAPKLVTTMVEIICGRVDKVKEQEKSIQKACLYAGMDRTQFFELFTDNETNFDWLKKVTLD--SQIKDKLASSKDEIYYAQKNLQDY
EEEMQLTVAELKALNKLYRRGDRRAKTAKAQMIEANLRLVISIAKKYANRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVKRQLLQKYGREATPEELAVEMELPEYKIVKILKIAKEPLSMETPVGDDEDSNIGDFIEDGNASSPVDITTKESLRETTGEL
LANLSPREAKVLKMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRAHKLSSFLE-
>tr|A0A0M4NIZ0|A0A0M4NIZ0_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Thioglobus sp. EF1 GN=rpoD PE=3 SV=1
-------------------MKSTTKAHKQALQKLITVGKEKGYLTYSEINDILPEDL--QEQVEPIVTILEELDITVSDSVPDADTLVESGA--------
-SAEAAVAA---------L--AALDSEFGRTTDPVRMYMREMGVVDLLDQEDEIRIAKEIEAGVFEIMQAITLYPSITDYFFKAHKRLEEGKCKMTDVII
-YQGDAADFEAKKAAF---------------------DEEYED---MEEEYTGPDEDKIYTRFETVLSCSQGYQELNEKH----------G--RHKKTVA
AREQLSKGLSDLRLAPKLVSTMMEVICDRVAQIKKQEKVIQNACLYAGMERAQFFEIFAGNETNYDWLKNAKLD--EKLASALDSVKDEIFYAQKNLHEY
EEEMQLTVAELKALNKLYRKGDRRAKKAKSQMIEANLRLVISIAKKYANRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVRRQLLQKFGREASPEELAVEMELPEYKIIKILKIAKEPLSMETPVGDDEDSNIGDFIEDTNLSSPVEITTKESLRETTGDL
LANLSPREAKVLKMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRAHKLQSFLD-
>tr|W6LZ35|W6LZ35_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Contendobacter odensis Run_B_J11 GN=rpoD PE=3 SV=1
----------------------MSEQQQSQLKKLIARGKEKGFLTYAEVNDHLPDDI--PEQIEDIISMINDMGIEVHEFVPDTETLLNENPVSA---DD
VVAEEAAAA---------L--AAVDSDFGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGMSQVLSALSSYPLTIGELLRAYHSISDNGTRLSDIIS
GFNDIDEVVPVLPDEALL---L-------A-DEDEDEEGASVVESGPD-------PQETANRFTELHTLYQETLNRADE-----------LGLQHDQTRM
LRQQLGDRFLQFRLVPKTLDSLIARLHEMAERIRTREKEVMHCVNRAQMPRKTFISSFPQNETRLDWIDEHIQS--RKHSALLAEQREAILDAQQRLQAI
EQQARLTIHEIKDINRHMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPDELARRMEMPEDKVRKVMKIAKEPISMETPIGDDEDSHLGDFIEDLNVMSPVDAATVEGLREATREV
LSTLTPREAKVLRMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPNRSEQLRSFLD-
>tr|A0A0N9M1G3|A0A0N9M1G3_9GAMM RNA polymerase subunit sigma-70 OS=Beggiatoa leptomitiformis GN=AL038_07740 PE=4 SV=1
---------------------MNYEQEDSQLKLLIAKGKEQGFLTYHEVNDHLPDDL--PEQIEGVISMINDMGIMVHEYVPDADSLMSDNAVAP--DDD
-AAEEAAAA---------L--ANVDSEFGRTTDPVRMYMREMGTVDLLTREGEIKIAKRIEEGLTQALTALATHPDIIGEFLGLYDKVAIEEIKLSDLIS
GFADHTNPDDEVP-ASAL---A-------DNGGEEDEEGGMLEEVTLD-------MEEASNRFNRLREAHQQMVATLEK-----------HGLSSNEFQQ
ARQDVTDVFLQFKLVTKLIDDLSLRLQNDVATIREQENIIRDCIKKVQMDKKEFLSSFKNNMTNPEWIPNLLKGNK-AYVENLKKYADDLMQHQSKLIAM
EKQSRLDLAEIKEINRRMSIGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVARQILQEKGREATPEELAEKMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSIPAPLESATFEGLRRATQEM
LHSLTPREAKVLRMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|W6M7F9|W6M7F9_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Competibacter denitrificans Run_A_D11 GN=rpoD PE=3 SV=1
----------------------MSEQQQSQLKKLIARGKEKGFLTYAEVNDHLPDDI--PEQIEDIISMINDMGIEVHEFVPDTETLLNENPVSA---DD
VVAEEAAAA---------L--AAVDSEFGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGMTQVLSALASYPLTSATLLKIYDSISENGTRLADVIS
GFKDVEETAPPLPDVDLL---L-------A-D--DEEGAQAVVESGPD-------PEETARRFADLRGLCTQALEAIDA-----------LGLQNAHPQE
LRQQLSERFLQFRLVPKTLDLLIANLHEIAERIRTQEKEIMACVNKAQMPRKAFITSFPQNETRLEWVDEQIGA--KKHSALLADYRAEILQAQQQLQVI
EAEARLSIHEIKDINRHMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPDELAKRMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDLSVLSPVEAATVEGLREATREV
LSTLTPREAKVLRMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPNRSEQLRSFLD-
>tr|A0A0K0XSL1|A0A0K0XSL1_9GAMM RNA polymerase sigma factor RpoD OS=Wenzhouxiangella marina GN=rpoD PE=3 SV=1
---------------------MENAPRPSQLKQLIEKGREQGWLTYAQVNDHLPDDI--PEQIEDIINMINDMGIKVFEEAPEDADAILNDSASSD-TDE
TAQQEAEAA---------L--AAVESELGRTTDPVRMYMREMGSVDLLTREGEISIAKRIEDGLNQVNMALSRFPGTVAALLEEAEVWKAGNQRLNELVS
GFIDPTLLAEMDL-ISED---T-------MEEDEDDDKPAPTVNTGPD-------PEQVAQFFDEMSRLHESFIKLYDR-----------YGPNGKKTNE
LKDQISEQFMRLKLPPRMFDHLIDRMRFHVAIIRDIERRIMSCVERAGMPRKEFIKSFQDNESDPEWLAGLVKRQT-KWGRALKDYQDEIAELQERLAKF
ETAQRVSIAELRELNRSMSIGEAMARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPDELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNILSPVDTATTTGLTDTVQKV
LGGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEQLRSFLD-
>tr|X2K342|X2K342_AGGAC RNA polymerase sigma factor RpoD OS=Aggregatibacter actinomycetemcomitans HK1651 GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKLLIAQGKEQGYLTYAEVNDSLPEEL--ADQIEDIIQMINDMGIQVLETAPDADDLLNENITD-----E
DVVEE-ATQV--------L--SSVEAELGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEEGINEVQSAIAAYPEAITYLIEQYDLVENGGVRLADLIT
GFVDPNVLTESETEELAE---D-------FNDNEGGSSDDSDSDNSVD-------PEIAREKFTALKQQHQKTLESIAK-----------HGRTAKKAKD
EIQVLSDIFTQFRLVPKQFDMLVLSIRGIMKRVRGQERFIQRVVDNAKMPKSGFQKSFIGHETTDTWLVKALSAG-KSWSEKLVQYENQLRQAITNLVQI
EQDTHLTIPQIREIGERITQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREASPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATVQSLKAATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|U4TJE6|U4TJE6_PISSA RNA polymerase sigma factor RpoD OS=Piscirickettsia salmonis LF-89 = ATCC VR-1361 GN=rpoD PE=3 SV=1
---------------------MDQQEKRSQFKELIVRGKQQGFLTFTEVNDHLPDDM--PEEVEEIVAMISDMGIPVYETAPDPDSLMNEHASSAE----
DDADDAVA----------A--LDSDAEFGRTTDPVRMYMREMGSVELLTRQGEIELAKRIEEGVKQAFEAIAHYPQSTAIILEEYARFEAEEIRLDDIIS
GYITEEDEAPTSN-IGSM---L-------DDGEGEDDNEEIPVDNTLD-------VEEAAERFAELKAAYDAVIQVQEK-----------HGIHHKKTQQ
RCEELSKVLMTFRLKPNMIDKITNYLHGLLSQVRKHERHIMACINQAKMPRKLFIDIFPGNETNLEWIEYQIKAEQ-SYSEALQSLAPEVTRAQKKLISL
EQESNFDVTAIKEVNRNISIGEAKAHRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMIQELGREATPEELSERMEMPEHKIRKILKIAKEPISMETPIGDDEDSHLGDFIEDTTMQLPVDSTMGDALKQATSDI
LENLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEILKSFLD-
>tr|V8L0V7|V8L0V7_XYLFS RNA polymerase sigma factor RpoD OS=Xylella fastidiosa 32 GN=rpoD PE=3 SV=1
-----------------PIMSNERTAQQSDIKQLISKGLEQGYLTYAEVNDHLPEDL--PDQIEDIIGMINGMGIEVHEVAPDAETLLNEGNTGN-REDD
TAAEEAAAA---------L--SALDTEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLSEVQAALGVFPLSTELLLSEYELHKEGKRRLTEVVV
GFNDLIEEDNSVTSSVDV---T---------DDDSVGNDEDAPTIGPD-------PAEVASRIESLSTEYAKFKKLYAKH----------GP-EHKAVIK
VREDVAAIFVTFKLSLPLTDLLVQQLQNMVNSVKDHERKVLHATNVAKMPRKDFIRSWENNQTNLEWVEDAIKRKQ-KWSSALRDIKDQITAEQQASIDL
EKANSLTLADIKEINRMMVYGEAKASKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNVNLSETVREV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A6VM98|A6VM98_ACTSZ RNA polymerase sigma factor RpoD OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpoD PE=3 SV=1
----------------------MEHNPQSQLKLLIAQGKEQGYLTFAEVNDHLPEDL--TDQIEDIIQMINDMGIQVLETAPDADDLLNENITDT---DE
DAVEE-ATQV--------L--SSVESELGRTTDPVRMYMREMGSVELLDREGEIGIAKRIEDGINEVQSAIAEYPEGITYLLDQYAQVEEGGIRLADLIT
GFVDPTVEESAD--EFSD---D-------LADNNDNSSSSDDNDNSID-------PEVAREKFYALRDQHDKTIATIAK-----------HGRGSAKARE
QMKALSEIFTQFRLVPRQFDVLVIPMRKMMKRIRAEERQIQRAVDYARMPKDEFVKVFSGKETNDAWLTKLLGGK-KPYAEKLAKYADNIRASIARLQNL
EQEAHLTIEQIRNIGDRISQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|D3RUA9|D3RUA9_ALLVD RNA polymerase sigma factor RpoD OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) GN=rpo
--------------------MDQE-QQQSQLKQLIAKGKEQGYLTYTEVNDHLPPGI--TDQIEDIVRMINDMGIMVQETAPDVVDHLSDSAV-S----D
EAAEAAAAA---------L--ASVDSEFGRTTDPVRMYMREMGTVELLTREGELQIAKRIEDGLNQVLNALSVYPRSIEKLIEIFDRVDREEARLTDVIS
GFNDEATETDETLATDVQ---A-------ASSDDDDDSATVEVDTGPD-------PEDAARRANLLRERYQTLKAALEE-----------YGRDDERSRE
AMQAVSEVFLQFKLVSPVFQELAEILRATIERIRAQERAIMSCVEQAGMGRKEFIETFPSNETNPEWLDGLIARG-RPFSVRLQELAPDIQRAQRKLQDI
ERENILTIGEIKEVNRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEMGREATPEELAARMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSGVISPLDSATAEGLREATQNM
LASLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLRSFLD-
>tr|L0GTT2|L0GTT2_9GAMM RNA polymerase sigma factor RpoD OS=Thioflavicoccus mobilis 8321 GN=rpoD PE=3 SV=1
--------------------MDQE-QQQSQLKQLIAKGKEQGFLTYTEVNDHLPPGI--PEQIEDIVRMINDMGIMVHETAPDSIDQLSDSAV-S----D
EAAEAAAAA---------L--ASVDSEFGRTTDPVRMYMREMGTVELLTREGELQIAKRIEDGLNQVLTALSIYPRAIEKLLEIFDRVEREEVRLADVIS
GFNDGDETAEATTPSPAE---A-------PQSDDDEDDDTTVADTGPD-------PEEVARRVQLLREHYAVLKQHLEQ-----------HGRDDQRSRE
AMQEVSEVFLQFKLVASIFHELTDLLRDTIERIRHQEKIVMTCIDTAGMPRKAFIESFPANETNPAWLDDLLASG-KPWAARLTESAADIRRAQRKLQEL
ERENVLTISEIKEVNRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEMGREATPEELATRMEMPEEKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDAGVVSPIDSATMEGLREATQNM
LASLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLD-
>tr|I3YFY9|I3YFY9_THIV6 RNA polymerase sigma factor RpoD OS=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) GN=rpoD PE=3 SV=1
--------------------MDQE-QQQSQLKQLIAKGKEQGYLTYSEVNDHLPPGI--TDQIEDIVRMINDMGIMVQEVAPDVVDHLSDSAV-S----D
EAAEAAAAA---------L--ATVDSEFGRTTDPVRMYMREMGTVELLTREGELIIAKRIEDGLNQVLAALSVYPRTVEKLIEIFDRVEREETRLTDAIS
GFNDGEEEVALHVVH------A-------HVDVDDDDASTAVVYTGPD-------PEDAAQRAALLRERFDVLRAALEQ-----------YGRDDERSRA
AMAEVSEVFLQFKLVAPVFQELTEILRTTIARIRAQERLLMACIEQAGMPRKLFIDSFPKNEANPDWLEQQLASG-QPYAPRLAELAQDIRRAQRKLQEL
ERENILTIGEIKEVNRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEMGREATPEELAIRMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSGVISPVDSATAEGLREATQNM
LASLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLRSFLD-
>tr|G2E2E2|G2E2E2_9GAMM RNA polymerase sigma factor RpoD OS=Thiorhodococcus drewsii AZ1 GN=rpoD PE=3 SV=1
--------------------MDQE-QQQSQLKQLIAKGKEQGYLTYTEVNDHLPPGI--TDQIEDIVRMINDMGIMVQETAPDVVDQLSDSAV-S----D
EAAEAAAAA---------L--ATVDSEFGRTTDPVRMYMREMGTVELLTREGELTIAKRIEDGLTQVLTALSVYPRSIEKLIEIFDRVEREETRLTDVIS
GFNDLEEEPETPVPSSPA---A-------ASD-DDDDDDAAVVDTGPD-------PEEAARRAALLRDGFEVLRVSLEQ-----------HGRDDERSRA
AMAAVSEIFLQFKLVAPVFQELAEILRGTIERIRSQERLIMSCVDQAGMPRKQFIETFPRNETNSEWLDQLLASG-HSYATRLEENASEIRRAQRKLQEV
ERENYLTIGEIKEVNRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSGVISPVDSATAEGLREATQNM
LSSLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLRSFLD-
>tr|W0DYH4|W0DYH4_MARPU RNA polymerase sigma factor RpoD OS=Marichromatium purpuratum 984 GN=rpoD PE=3 SV=1
--------------------MDQE-HHQSQLKQLIARGKEQGFLTYAEVNDHLPPGI--AEQIEDIVRMINDMGIMVHETAPDSDDQLSDSAV-S----D
EAAEAAAAA---------L--ASVDSEFGRTTDPVRMYMREMGSVELLTREGELIIAKRIEDGLNQVLAALSVYPRAVERLIELFDQVEREEKRLTDVIS
GFNDATDDEPATPVQHGQ---S-------AQADDDDDEDDTPVDTGPD-------PEDAARRAKLLREHFAVMREALEQ-----------YGRDDERSRK
AMAETSEVFLEFKLVAAVFQELAELLRGTIERIRAQERQIQSCVRQAGVPRKAFIEGFSGNESSPEWLDKLLASG-KPYAARLEPLAVDVRRAQRKLQDL
ERENFLTITEVKDVNRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMIQEMGREATPEELAIRMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDAGVVSPVDSATSEGLREATQNM
LASLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLD-
>tr|A0A0A8ULQ5|A0A0A8ULQ5_LEGHA RNA polymerase sigma factor RpoD OS=Legionella hackeliae GN=rpoD PE=3 SV=1
-----------------MTTMNDQEQQHSQITKVIRLGKEQNYLTYAQINDLLPN-I--TEHFDVIISMLEGMNIKVFEVSPSEDELLLGTTED----AP
DDVEEAAAV---------L--ASVDKETGRTTDPVRMYMREMGTVELLTREGEIRIAKRIEEGIYQVLKSLAHYPETVQLVLEDYDRVVTEEIRLSDIIS
GFADVEEE-APASSIGSM---L-------DEEGEEGEGGLGEADEGPN-------PEQAKIYFDELRECYANAMEALKK-----------HGRTAPKTLT
QLEAMSESFLKLKLTSRQVDKLTRHFRQLRNHIREFERSIMRCIEKARIPRKLFIDTFPGQETDLTWLETIISKHTKLDMARIEEYREEILRLQSKLASF
EEEFGLIISEIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQIMQETGREATPEELAAKMDLSEDKIRKVLKIAKEPISMETPVGDDDDSHLGEFIEDTNIESPIERATAEGLREATLEI
LETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLE-
>tr|A0A098G807|A0A098G807_9GAMM RNA polymerase sigma factor RpoD OS=Legionella fallonii LLAP-10 GN=rpoD PE=3 SV=1
------------------MTMNDQEQQSSQITKVISLGKEQGYLTYSQINDLLPN-I--TEHFDVIISMLEGMNIKVFELPPSEDELLLLNTEE----VP
D-IEEAAMV---------L--ASVDKETGRTTDPVRMYMREMGTVELLTREGEIRIAKRIEEGIYQVLKSLAHYPETVQLVLDDYDRFNAEEIRLSEIIS
GFADSDEEIAPAANIGSM---L-------NEEEGEGEGGLGEVDDGPN-------PEQAKIYFDDLRIHYNDAIKTLKE-----------HGRTNPKTIK
MLDAMSDSFLKLKLTSRQVDKLTRHFRQLRNHIREFERGIMRCIEKARIPRKLFIDTFPGQETDLKWLEALVAKNGKLDVQRIEEYTDEILRLQSRLASF
EIEYGLSISEIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQETGREATPEELAEKMELSEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDNNIESPIDMATAEGLREATLEI
LETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLE-
>tr|I2NDS1|I2NDS1_9PAST RNA polymerase sigma factor RpoD OS=Haemophilus paraphrohaemolyticus HK411 GN=rpoD PE=3 SV=1
-----------------EQHVDQQLEQQSRIELLIAQGREQGYLILSEVHDHLPEEL--AEQIEDIIQMITDMGIQVLETAPDTDELLAENITD-----E
DVVEE-ATKV--------L--STVESELGRTTDPVRMYMREMGTVELLTREDEIQISKRIEEGINEVQCAVAEYPEALEGVLSCYAEVEAGNMRLVDLIT
AFVDPNAQEENPVADDDS---I-------HLEDGDSGNADSGDDNSID-------PELAREKFTALKEQYENALLAIRK-----------HGRTHAKARE
QINALSDIFREFRLVPKQFDLLVETMQKLMKQVRSEERQIQRAVEYAGMKKADFLKNFQGNETSEAWMEKAINAK-RGGVPKLANYVEKIRVNITNLQNL
EQNSGLTITQIREIGGRIANGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRIATNEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|J4TWN6|J4TWN6_9PAST RNA polymerase sigma factor RpoD OS=Haemophilus sputorum HK 2154 GN=rpoD PE=3 SV=1
-----------------QQLVDQQLEQQSQIALLIAQGREQGYLILSEVHDHLPEEL--AEQIEDIIQMITDMGIQVFEVAPDTDELLAENIAD-----E
DVVEE-ATKV--------L--STVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAVAEYPEALSGVLACYEQVEEGTMRLADLVT
AFIDPNLEAATEEHLDPD---L-------HHDEDASDSSDSSDDNSID-------PEVAREKFTKLKEQHEKALLAIQK-----------HGRTHKKARE
QIHALSDIFREFRLVPKQFDLLVETMQKLMKQVRAQERQIQRAVEYAGMKKGDFLKAFQGNETSEEWIEKAINAK-KGGAPKLANYIEKIRVNIAALQEL
EQSSGLTIAQIREIGGRIANGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRIATNEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A0A6TWA8|A0A0A6TWA8_9XANT RNA polymerase subunit sigma-70 OS=Xanthomonas axonopodis pv. phaseoli GN=PK68_06095 PE=3 SV=1
-------------------MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDL--PEQIEDIISMINGMGIDVHEVAPDAETLLNDGNTGN-REDD
TAAEEAAAA---------L--TALDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVV
GFNDLIEEADAAAAALAA---A---------DGDDDAAEEEAGPTGPD-------PVEVATRMENLANEYAKFKKAYAKN----------GA-EHKLVVK
AREDVAAIFTTFKLPLPLTDALVTQLRGVVNGIKDHERKVLHATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQ-KWSSALRDVKDQIISEQQGSIEM
EKANYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|H8L2A4|H8L2A4_FRAAD RNA polymerase sigma factor RpoD OS=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) GN=rpoD PE=3 SV
-------------------MNSKAHEQQSEIKQLISKGLEQGYLTYAEINDHLPDDV--PEQIEDIMAVLKGVGIEVHDAAPDSD--LSDNSNGGG-TDE
AAAEEAAAL---------L--SAVDAEVGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQTALASFPLTIELLLEEYSQHQEGKRRLSEVLA
GFTDLEEAAAAEA-ESAD---D-------DSSNG--SDDDDNASSGPD-------PEEVRRRMDELRGFYEEFQKVSPEA----------ASIDDPRIVA
LRGQMAEAFLRLKLPSALIDGFVRRLREVVGDIRSHERVLMELVKHVKMPKTEFLKTFPNNEGNLEWAEELGRKRQ-KWSANIKLHREAIDAEQEKLAGI
EKTLFLPLTDIKEINRTMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREPTPEELAKEMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDANASSPVESATETGLMETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A076U2Z4|A0A076U2Z4_MORCA RNA polymerase sigma factor RpoD OS=Moraxella catarrhalis GN=rpoD PE=3 SV=1
-----------------NHINEDHDTSSSQLGALIRLGKEQGYLTYAEVNDQLPESV--SDQIEDIIQMLTDVGIQVFEVAPDDDDILSDTGS-----DD
IATDEAAAV---------L--ASVETEPGRTTDPVRMYMREMGTVDLLTREGEIGIAKRIEEGTREVQYIMAYWPGTVKFVLDEYQQVLLGEKKISDIVS
GFLNGDDGDFILNEEEIE---L-------DLGESDGTELDDTDDSSLD-------PEEVRVRFEEIQRLYDVAQEALAK-----------HGRGSEAVKV
AYDELANHFMLIKLNNRLSDQVMSLMREVYEDVRSNERRIMKVIRHGKMPMDEFKKTFPSNETNLEWLSHRIKGGP-AFAETLAKIEPEVVALQQKLLAH
EQALQMDIRDMKAVARQMAIGEAKARRAKKDMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLDMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTISSPIENATAEGLREATREV
LDNLTEREAKVLKMRFGIDMPSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLE-
>tr|A0A066UEF5|A0A066UEF5_9GAMM RNA polymerase sigma factor RpoD OS=Moraxella bovoculi 237 GN=rpoD PE=3 SV=1
---------------------MSEQHSNSQLATLIQLGKEQGYLTYAEVNDQLPESV--SDQIEDIVQMLTDVGIPIYEVAPDDDDILTDTSS-----DE
MAADEAAAV---------L--ASVETEPGRTTDPVRMYMREMGTVDLLTREGEISIAKRIEEGTREVQYIMAYWPGTVKFVLDEYAQIETGEKKISDIVS
GFLNLEDDEFELKEDNDI---E-------PEEEDLDGASGGDDDSNLD-------PEEVRARFEEIEQLFNQSQKALEK-----------YGRGSPEAKA
AYDELASHFMLIKLNNRLSEQVITLMREVYEDVRNSERKIMRVVRRGKMPLEEFKKTFPSNETNLEWLPLRISGKP-AFAETLQRVLPEVVALQERILAH
ENDLQMDVKNMKAVARQMAIGETKARRAKKDMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLDMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTISSPVDSATAEGLREATREV
LDNLTEREAKVLKMRFGIDMASDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLE-
>tr|A0A0H5BWG5|A0A0H5BWG5_9ENTR RNA polymerase sigma factor RpoD OS=Candidatus Westeberhardia cardiocondylae GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLITRGKEQGYLTFSEINDYLPNDI--SDQIEGIIQMINDMGIQVTEDAPNSEDLLISDASNA---DE
ESLEVVTAQV--------L--SSVDSEINYTTDPVRMYMREMGSVELLTREGEVDIAKRIEDGINQVQRSLSEFPLVILYLLGQYKHVVSNKIRISDLVL
GFSDTNFNENVMSNSNS----I-------STENSNNRDVNEEDNNIVD-------LELAKNKFMELQKQYYVTHKIIQM-----------YGRKHIKSSR
EILNLSDIFKQFRLAPKQFDYLVNIVRTIVCRVRTQERFIMKCVDVSKMPKKKFIFLFSGNESSEFWFKKALLEK-EPWAENLQNVGEDVYCSLNILHEI
EKETGLSIEQIKDINRRMLIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRKMLQEIGREPTPEELSERMLISEDKIRKILKISKEPISMETPIGDDEDLHLGDFIEDVSLELPLDSATAESLRSATHSI
LSGLTAREEKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEILRSFLD-
>tr|I4VXS1|I4VXS1_9GAMM RNA polymerase sigma factor RpoD OS=Rhodanobacter spathiphylli B39 GN=rpoD PE=3 SV=1
------------------MNSKAPHEQQSEIKALISKGLEQGYLTYAEINDHLPDDI--PEQIEDIMAVLKGVGIEVHDAAPDTDTIDGAAPGGG-TGDD
SAAEEAVAL---------L--SAVDAEVGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQTALASFPLTIELLLEEYDQHLDGKRRLSEILA
GFLDLEEAADLARKEKEA---A-------ALEDESSEDEEEAGPSGPD-------PEEVKRRMELLRDYYGKFQKAAPKA----------ASITDKKIVK
LRDQMAEEFLKLKLPSALIDGFVRKLREVVGDIRHHERVLLDFVKQVKMPKAEFIKTFPSNEGNLEWAAELGRKRQ-KWSPNIKTHREAIDAEQEKLAAI
ERKLFLPLIDIKDINRAMASGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGNASSPIDSATETGLMETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0K2BL76|A0A0K2BL76_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Baumannia cicadellinicola GN=rpoD PE=3 SV=1
----------------------MEQNKHSQLKLLVTRGKEQGYLTFAEVNDHLPEDI--SDQIEDIIQMMNDMGIQVMEEAPYADDLLAETTSDT--TDD
DAVEAAAQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAIAYLLKQYDRIAYGEIRISDIII
DFFDNNNIEEID-MMANT---S-------HIDIDHHDHANEDSDSSID-------PELANQKFIELREQYEITKHIINT-----------KGRSNTKAIE
EISKLSYIFKQFHLVPKQFDYLVKNMRMMMDRVRTQERLIMKCVEISHMPKKYFVKLFLGNEASEIWLQTALTMN-TPWSEKLHKVNEMVRSSIKQLRKI
EEETGLSIEHVKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRLMLQEIGREPTPEELAERMLMPEEKIRKVLKIAKEPLSMETPIGDDEDSHLGDFIEDTNIELPLESATSESLRSATHNV
LAGLTAREAKVLRMRFGIDMNSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|E1VNE5|E1VNE5_9GAMM RNA polymerase sigma factor RpoD OS=gamma proteobacterium HdN1 GN=rpoD PE=3 SV=1
--------------------MSDTEQQKSQLKQLIARGKEQGFLTFADVNDHLPPDI--PEQVEDIIAMINDMGIPVHEAAPGAEGLRGGANP-----NE
DASDEESPA---------N--AVIDAEPGRTTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIREVMSALAFWPDAVDVVLDEYSKVDSQERRLNDIIS
GYLDLAECEVEESDFQAN---A-------PAEGESGDSSEEEDAGSLD-------PEEARVRFGALLDALNAAKTTREE-----------KGRKSKPFTN
AQEELANQFITFKLVPRLFEQLVGGVRETLERVRENERAIMTCIRIAKMPRKDFVKQFPGNETNIEWVDKIAGGK-TAYAERVGALKDDIIKLQQNLLGL
ESTLSLSIAEIKEINRRISIGEAKAARAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTMQSPVDAATAESLREATRDV
LASLTAREAKVLAMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|A0A0H1ATF8|A0A0H1ATF8_9GAMM RNA polymerase sigma factor RpoD OS=Luteimonas sp. FCS-9 GN=rpoD PE=3 SV=1
-------------------MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDM--PEQIEDIIGMINGMGIDVHEVAPDAETLLAGESSGN-REDE
TAAEEAAAA---------L--TSLDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLNQMMASVASFPWSVQLLLEEYELHKAGKKRLAEVVV
GFNDQLLEELAAEEEAAA---G-------NADDDSGDEEESTGPSGPD-------PAEVARRMDVLADLFNKFQKAYAKN----------GA-SAKPVVK
LRGEMADQFMTFKLPLPLSDLLVRKLRDVVGELKDHERRILDSTRVAKMPRKDFIRAWDGNQTNTGWADEMIKRKQ-KWSSGLKDVRDQIVAEQEATLAI
EKAMGVTLGDLKEINRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEHRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDATTNTNLMETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|Q13K37|Q13K37_BURXL RNA polymerase sigma factor RpoD OS=Burkholderia xenovorans (strain LB400) GN=rpoD PE=3 SV=1
-----------------VHVSMEQDSREMQLRALMKLGKERGFLTHTEIVDHLPDCV--ADAIEGIVKAFNDVGIAVRDFAPTGDALLGDAAQQS-APDD
VAEDETATA---------L--TIAISEPGPAADPMRAYLREMGATPLLTREGEIAVARRIEACLREMLEVIALRPATVDAILSRADRVAAGELDIDDLVD
GFLEQQPDEMLPAMQGA----------------VPTSASESAGAIEADEARIARLTAGCNAIFSQVREQLASWRAAVAGR-----------TG--EEAQS
TLVLIASTLGQIRFSARTIGELSADVRRAVEEIRGIERNVLRAVNQGGMARDMFVETFVGSETDPEWLARAAAAAP-ACSAALMRCAPSIHSQQEKLAQI
EAREGLSLQELKWISRKMNVADRELQDARRAMIEANLRLVVSVAKKYVQSGMPLLDLVQEGNIGLMKAVDRFEYRRGFKFSTYATWWIRQSVSRAIADYG
RTIRVPVHMADAMHRVKRVAGEMRQETGRPARSSELAARLGMSEEKVRSVQRVTRQPVSLDVPIGEEADTTLGEMVEDSSTLAPLDALLQADLRVAIDAA
LGVLTPREAKVIKLRFGVDAVSEHTLEELGDQFDVTRERVRQIQNKALQKLRHSDGISTLKNYLD-
>tr|A0A099CSM0|A0A099CSM0_9GAMM RNA polymerase sigma factor RpoD OS=Oleiagrimonas soli GN=rpoD PE=3 SV=1
------------------MENNKSHEQQSEIKQLITKGREQGYLTYAEVNDHLPDDV--SEQIEDIISMINGMGIEVHESAPDSD--INPDAAS-G-NDD
TAAEEAVAL---------F--SAANAEVGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLLQVQTALASFPWAIQLLIEEYDLHKDGKKRLSEIIA
GFNDVEDPNDVMS-NSNS---D-------DQEDGDDDDSKKNTNNGPD-------PEEVERRIEALRTLYGKFQRAAGK-----------YEIEDKKVSK
IRDQMAEDFMALKLPSVLIDGFVRKMREVVNNIRRHERTLMHMVKQCRMPRSEFLKTFPANEGRIDWGAELARKRQ-KWVPALKKHLEEIDAEQQKLSDI
AAALYLPLADIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKVMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNVDLPVDAATATGLIENVRDI
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|D4G901|D4G901_RIEPU RNA polymerase sigma factor RpoD OS=Riesia pediculicola (strain USDA) GN=rpoD PE=3 SV=1
----------------------MDRNPKSQLKVLVNKGKEKGYLTYSEVNDNLPEDI--SDQIEDIIQTIIDMGIRVTEEVPDEDELLTDPTSST---DE
ETVEA-ATQV--------L--SSVEQEIGRTTDPIRMYMREMGTIELLTREGEIDIAKRIEDGINQIQRSISEYPKSISYILKQYFLFESGEMKLSDIIT
GLSSEDTFSSSKNVDKNF---S-------S-SQNSTRTNVEDEWNHID-------PKIARKKFLELQNQYEKVTHSLKE-----------NGIKSSQSIL
DIQDLCEIFKQFRLVPKQLDFLISDIRKTIEKIKIQEKLIINSFKEYKIPKKYFLNLFSNPKEYD--LKELIVSNRNKKDEKKFKLDSTIVQALNELNEI
EKDTGISISKIKEIGRKISIGETIARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNHISRQILQETGREPSPEELSERMLIPEEKIRKVLKIAREPISMETPIGDDEDSHLGDFIEDTTLELPLESATSESLRSATNEV
LSGLTTREAKVLRMRFGIDMHTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSELLRSFLD-
>tr|B0VSJ3|B0VSJ3_ACIBS RNA polymerase sigma factor RpoD OS=Acinetobacter baumannii (strain SDF) GN=rpoD PE=3 SV=1
--------------------MSDMHSPTSQVAALISRGKEQGYLTYAEVNDHLPDSI--SEQIEDIIQMLQDVGIPVHERAPESDDTFGES-ADA---TD
EVAEEEAAAV--------L--ASVENEPGRTTDPVRMYMREMGTVELLTREGEISIAKRIEEGIRDVLNSIAYWPNAVEVVLKEYNDFLTGERRLADILS
GYLDPETETDEDIPEVLE---D-------VEEEESEGDDDSEGDSGPD-------PEVAKVRFAELEAAWAQTKAVIEK-----------HGRNSPEANE
ALESLATVFMMFKFTPRLFDIISEMIRGTHEQIRANEREIMRAVRRGRMDRNQFRTSF-KQESNPAWLDEQIAKAPAEIKAHLEKVRPDVLAFQQKIADI
EKELGLNVSEIKDISKRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQNITSPIDAATSKGLKEATREV
LENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLE-
>tr|A0A0K2ZG85|A0A0K2ZG85_XANCT RNA polymerase sigma factor OS=Xanthomonas translucens pv. arrhenatheri LMG 727 GN=XTALMG727_0553 PE=3 SV=1
-----------------PLPRPDDAEARERLRLVLLRAVREGSVPRFAIEDLINNNDPDAEASKLLTMVINDLGAEADERFEYSAPH---------APDE
EEEEAVAEA---------L--AFLDNLATRRNEPLRLYQRDLRRQSLLTAEAEVALGQAMELGVEKALDALAAWPSGVAVLLNAARQVAEGTRPLRSMYF
APQADLLE---------------------------------AGAAPIADDAAVS-LEAALEL----P----DLEGEA--T-----------GS--RDLQS
DTKESTDELAEFCTNAELLSELAVDERQNTPTWESCRRVLAS----LGL-----------------------------TRGFLMELAN------SDLAG-
EADAAL----------AFAHAMTTYRRARDQMVVANLKLVYSISKKYLSSGQPLDDLLQEGNIGLIKAVDRYDWRRGFKFSTYGTWWIRQHVGRFVADKG
NTIRLPVHVYEKIRRIAQTAKDFELRHGHTPTLEEISALVEMPVHKVDALVRMDLEPLPLHELPDIDNLIAVEQF----AVRDAAEFVEDIQFGDSVDRF
LSTLKLKEANVVRMRYGIGLLDSMTLEEVGACYGVTRERIRQIEAKALGRLRHPVRLEQFLTEVG-
>tr|A0A060A1D9|A0A060A1D9_9GAMM RNA polymerase sigma factor RpoD OS=Acidithiobacillus caldus ATCC 51756 GN=rpoD PE=3 SV=1
-----------------SDSTVDNESQRSELKRLIARGKEQGYLTYREINDLLPEDVFDPEQMENVITMINDMGIEVFEEAPDDETLMDNEGNPIVA-AQ
EAEEAAEEA---------L--AVVEADIGRTSDPVRMYMREMGTVELLTREGEIEIARRIEDGLLQVLRAVSTCPTTIALLLEAAQKVEQGELRLDEVVD
AFIDPNAINEAAAEDEDL---G-------LAADDGDEDEDEEDGAGLSVADKGPQLEEALERFAAIRAGYEHLLALHKA-------------GRSPEYQE
QRQLLADRFMEMKLNVRQIDLMADALRNLTEEVRLAERELMACIDRAGFPRKEFVRSYPGHESDIAWVDAQIA-AGRPYSPMMLVLRDEIVAVMTQLADI
EERAGLPIAEIKEASRLMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAARMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDRNVAAPTDAAVNAAIREVVEEL
LDGLTPREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLRSFVD-
>tr|B5ELK3|B5ELK3_ACIF5 RNA polymerase sigma factor RpoD OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpoD PE=3 SV=1
-----------------GESVVDNESQRSELKRLIARGKEQGYLTYREINDHLPEEVFDPEQMENVISMINDMGIEVFEEAPDDDTLMDGEGGTVVA-AQ
EAEEAAEEA---------L--AVVEADIGRTSDPVRMYMREMGSVELLTREGEIEIARRIEDGLMQVLRAVSTCPTTISLLLDAAARVERGETRLDEVVD
AFIDLSALDAETVSEAEE---S-------VLLD-VDEDEEESEDGDIEVVDKGPQLEDALERFAVIRAAYTALLASHAE-------------GHGESYQR
QRRELAERFLEIKLNGRQIDVMTDALRGLTEEVRQCERELMECIERARFPRKEFVRSYPGHEGDIGWIDQQIA-AGHAYSTRLVEFRDDIVAIMKRLANI
EKRAGLPIAEIKEASRLMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDRNVTAPADSAVNAAIREVVEEL
LDGLTAREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLRSFVD-
>tr|B3PKA1|B3PKA1_CELJU RNA polymerase sigma factor RpoD OS=Cellvibrio japonicus (strain Ueda107) GN=rpoD PE=3 SV=1
-----------------SRMSDDVQQQQSRIKELIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIQMINDMGIRVYETAPDADTLMTDG-DAA---DE
IAAAEAAAA---------L--VAVETETGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGVRELMHALAYWPGAVEHVLNEYALVAKEERRLADVII
GWLDPIEDIPSAT-SDDD---T-------ELDEEGGSEDEEEAITGVD-------PEEARARFEELQKQYEKTTKALAK-----------HGYGSKQAEK
ELNALGDLFKFFKLPARQFDPIYNNAREALDKVRKHERRVMDCTRKAQMQRKTFIKEFPGNETNADWLPDLLKGK-IEGADKLQVVLPNVQAEQQQLAQI
EAESSLSLASIKDINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIISPVESATMEGLMEATREV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLD-
>tr|A0Y847|A0Y847_9GAMM RNA polymerase sigma factor RpoD OS=marine gamma proteobacterium HTCC2143 GN=rpoD PE=3 SV=1
--------------------MSETEQQQSRLKTLIAKGKEQGYLTYAEVNDHLPQDI--PDQVEDIIQMINDLGIQVFETAPDADEILTEE-DS----DD
IAAAEAAAA---------L--AAVETEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGIRDIMAAVAYYPGAVQDVIDDYDKVATEERRLADILV
GYLNPTDVVPPAA-QQAA---A-------AV----TDDDDDETPSGPD-------PEEAKKRFTALRKQHNKLDKAIEK-----------HGRYSKESAK
ELQKLGEVFKFFKLTPKVFEPLSIRVRSKLNVIRSNERLIMNCVRQAKMTRRDFVKSFQGQETNLDWIEQQIKAH-EDVAPVLEANKEEILRAQRKIAQI
ETQTGLTILDIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTIAQPVDSATGQGLQEATKDV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLD-
>tr|F3LG17|F3LG17_9GAMM RNA polymerase sigma factor RpoD OS=gamma proteobacterium IMCC1989 GN=rpoD PE=3 SV=1
---------------------MSNNKQESRIKLLIARGKEQGYLTYADVNDHLPQDI--PDQVEDIIQMINDMGIRVYENAPDAEELMTDG-DSS---DE
IASAEAAAA---------L--AAVETEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGTRDLMHALACWPNVVQILIDEFDLLVKEERRIPDLIA
GWLDPADDVPAAG-PAAQ---K-------NK---DDDEDEDEVDTGLD-------PVEVNERFGALKKQLAKTDKIIKK-----------HGRESKEAEA
ELSELGDIIKFFKLPPRQFDPMYKKARGVLESVRREERRILSCVRTAKMPRKTFIKEFPGNETDPTWIPGVIEKK-RDYSANFEEVKEEILRAQRKLDQI
QNTVGIELSMIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEEKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTITSPVESATDVGLTESTRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLD-
>tr|A0A0F2P6L8|A0A0F2P6L8_9GAMM RNA polymerase sigma factor RpoD OS=Gammaproteobacteria bacterium BRH_c0 GN=rpoD PE=3 SV=1
--------------------MSESPQQQSRLKELIAKGREQGYLTYAEVNDHLPEDI--PDQVEDIIQMINDMGISVFETAPDADTLMTSG-DTA---DE
IAAAEAAAA---------L--AAVETEQHRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGIRELMSSLAEWPKTVDYIISEYDLVASGERKLSEIIS
GYLNPMEHVPSAL-EQSA---A-------AA---EPEVETNQDEDGLD-------IDEARERFEALRKQNDKTKRALSR-----------HGRNSDAAKK
NLEELGELFKFLKLPPRQFDPLIVEVRDVLEQIRREERNIMSCVRRGKMPRTDFIKSFPGNETNEKWLATILKKK-LPYSDRLKEAEEDILRSQRRLQHI
EETSGISVAQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNIMSPIESATTESLTEATREV
LNGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFIE-
>tr|Q21MV1|Q21MV1_SACD2 RNA polymerase sigma factor RpoD OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpoD PE=3 SV=1
--------------------MSEQAKKQSRIKELINRGREQGYLTYDEVNDHLPDDI--PDQVEDIIQMINDMGIRVYEVAPDADELMTDG-DSS---DE
IAAAEAAAA---------L--AAVETEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLRELNHAIALWPEAVQQYVNEYDLVEKEERRLADVIS
GWLDPAEDVAPPV-VAAE---T-------AEDDDDTDTEDEEESTGID-------PEYARERFDELKAALLKVEKAIAK-----------HGFESKAAGK
EMEALGEIFKYFKLPPRQFDPIYQGIRQILTRVRAEEREIMRCTRLGGMPRKTFMKEFPGQETDEDWIPATIGKG-RDYSDSLKPYAEDIIRAQRKLKQI
QEESGLSLGHIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIDSPVDSATIQGLTEATRSV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFLD-
>tr|F3KCU1|F3KCU1_9GAMM RNA polymerase sigma factor RpoD OS=gamma proteobacterium IMCC2047 GN=rpoD PE=3 SV=1
-------------------MSDTSEQQRSRLKELIARGKEQGYLTYAEVNDHLPQDI--PDQVEDIIRMINDMGITVDEVAPDQDTLLNEN-T------D
DAVEEAAAA---------L--AAVETEVGRTTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIREVMCALASFPGAVDVILEAYAQTIEEEGRISDILS
GFLEDEVEEPVIQGQQAP---Q-------PVTDDSDDEDEDEVERGPD-------PVETAERMSALKKQFEIVNKAIEK-----------HGRGSKQVLE
AQEELGEIFCPIKLTPRYFDRLVQNVRETLEFIRAQERLILHCTRTVRMPRKAFIKEFMGSETDPAWLDRAIEGG-HDYSEGLAEHREDIVRAQRKLKTT
EESIDAPIHEIKEINRHMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNIDSPIDSATAEGLSEATRGV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFLD-
>tr|A0A0C5W2K3|A0A0C5W2K3_9GAMM RNA polymerase sigma factor RpoD OS=Gynuella sunshinyii YC6258 GN=rpoD PE=3 SV=1
--------------------MADKQKQQSRLKVLIARGKEQGYLTYAEVNDHLPDDI--PEQVEEIIQMINDIGIQVFEQAPDADQLMEGASSPA---DD
DASEEAAAA---------L--AAVESDTGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGLRDVMQALALFPGNVEQILAAYAMSQ-EEGRLSDVLV
SFLDPDDNSSIAVPVTDD---S-------QDDDDDTTTTDEEEDVGID-------PEYAKERFNELANIYKQCNSIIEK-----------HGRASKEAGV
ALKELGEIFAPFKLAPKQYDDIMLRTRGAMAIIREQEQKFLECVRKVKMPRKEFLSGFIGNEMNEEWLESLLN-N-PAYEDALVRYEVELRRAQRKLRQL
QDKVGLSIAEIKDIHRSISIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSERMDMPEDKIRKVLKIAKEPISLETPIGDDEDSSLGDFIEDGSMDSPVDTATGSSLEESTREV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLD-
>tr|C5BMY7|C5BMY7_TERTT RNA polymerase sigma factor RpoD OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rpoD PE=3 SV=1
----------------------MSEQQQSRIKELINRGREQGYLTYDEVNDHLPDDI--PDQVEDIIQMINDMGIRVYEVAPDADELMTDG-EAS---DE
IAAAEAAAA---------L--AAVETEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLRELMHALAFWPNAVQQIMDEYDLVEKEERRLNDVIS
GWLDPAEEVEAAT-PVDS---T-------DNEDDDSSSDEDENNSGID-------PEYARERFDELRVQLVAANDAIAK-----------HGLDSKETGV
ALEALGEVFKFFKLAPRQFDPIYNYVRDVLARIRAEEKEIMRCVRMAGMPRKTFVKEFPGNEINEDWIPEIIRKK-RDYSDSLRPVEGDILRSQRKLQQI
EEETGLELTAIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTITSPVESATSQGLMEATKAV
LAGLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFLD-
>tr|K4KLN1|K4KLN1_SIMAS RNA polymerase sigma factor RpoD OS=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) GN=rpoD PE=3 SV=1
-------------------MVDIGKQQQSRIKELIARGKEQGYLTYSEVNDHLPEDI--PDQVEDIIQMINDMGIKVFETAPDADTLMTDG-DSS---DE
IAAAEAAAA---------L--AAVETEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGIRELMHSLAYWPGAVKQLLDEYELVEKEERRLVDVIA
GWLDPADEVPTAA-EQAQ---M-------REDDDDSSSDDDSNDGGVD-------PEEARQRFAALRDAHVKYEKSLAK-----------NGRAHKSTDK
ALNDMGEIFKYFKLPPRQFDPLYGRVRGMLDRVRAEERSVMSCVRTAGMPRKTFIKEFPGMETNDSWVADIIKKK-RDYSDALAAVEPEIVRSQRKLQQI
EQESELDLASIKEINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVTITSPVESATVEGLIEATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLD-
>tr|L2F6W3|L2F6W3_9GAMM RNA polymerase sigma factor RpoD OS=Moraxella macacae 0408225 GN=rpoD PE=3 SV=1
--------------------MSDYEHSTSQLATLIQMGKEQGYLTYAEINDQLPDSV--SDQIEDIIQMLSDVGIKIFEIAPDEDDILSDNSN-----DE
IAADEAAAV---------L--ASVESEPGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEDGVRDVQYAMTFWPGTVELVLSEYQETFEGEKKVSDIVT
GFLDASSDDVEIGEGS-----D-------KITDEIGDDGETDDTIGLD-------LEEVKNRFIELEKLYQVAKTATEK-----------HGRASEQSTQ
AYQDLANYFMLFKLTGRIADIIMDMMRAVYEDVRKHERHIMKVIRRGKMPKDEFRKTFPNNETNLDWLPNRIAGKP-DFADNLSKILDEVLLHQGKIADY
ETKLGMDINQMKKVARNMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGCRLDMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSSINSPVDEATAQGLKEATREV
LANLTDREAKVLKMRFGIDMATDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLE-
>tr|A0A0L0J8J4|A0A0L0J8J4_9GAMM RNA polymerase sigma factor RpoD OS=Enhydrobacter aerosaccus GN=rpoD PE=3 SV=1
----------------------MSEHSTSQLATLIQLGKEQGYLTYAEINDQLPESV--SDQIDDIIQMLTDVGIKIFETAPDEDDILSDDAD-----DE
IAVDEAAAV---------L--ASVESEPGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEDGIRDVQHAMTFWPGTVAMLINEYHQTFEGEKKVSDIIT
GFLDPEAADVIPLADDEE---V-------EIDGEVSEDADTEEASGLD-------PEEVRLRFEELEQLFTKVKDLLAT-----------HDRDSEVVKA
AMNELANCFMLFKLNSRVSDNIMDMMREVYEDVRKNERHIMKVIRRGKMPKDEFRKTFPHNETNLDWLPNRIAGKP-AFADTLERVLDEVLQYQGRIQQH
EQNLGMSIDQMKVVARNMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSSISSPVDEATAQGLKEATREV
LANLTEREAKVLKMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLE-
>tr|A0A095SCH1|A0A095SCH1_9GAMM RNA polymerase sigma factor RpoD OS=Alcanivorax jadensis T9 GN=rpoD PE=3 SV=1
-------------------MTTQKQQQQSQLKQLIALGKEQGYLTYAEVNDHLPESI--TDQVEDIIQMINDMGITVVEKAADADQLIEES-ADS---DE
VAAEEAAAV---------L--ASVESEPGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGTREVLHALAFWPGAVDMLITEYARVENEERKLTDIIA
GYLDPNDDGAAATNANKE---P-------TFKKDSDDDDDDEDEGGLD-------PVLAAERFAELKKLHEKAERALKR-----------NGRDHASSAK
ALEALAEHFTLFKLVPRIYDEMLVGARNNLDLVRKFERQIMTAIRRGGMDRRDFIKLFPGNETNMGWVDQQLKTKKKSIADKLSVVKEDIQRAQRKITTV
EEIIGLPVGDIKEINRRISIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVQRQMLQEMGREPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNMESPVDSATSLGLEEATRDV
LANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|A0A0B4XM93|A0A0B4XM93_9GAMM RNA polymerase sigma factor RpoD OS=Alcanivorax pacificus W11-5 GN=rpoD PE=3 SV=1
-------------------MTSQKEQQQSQLKQLIALGKDQGYLTYAEVNDHLPDSI--TDQVEDIIQMINDMGIPVVEKASDADQLMDEN-ADS---DE
VAAEEAAAV---------L--ASVESEPGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVLHAMAYWPGSVEVVLGEFDKITTEERRISDLIA
GYLDPNDDGAAAPSQPTE---A-------QFEDDDSDDDSDEDDGSID-------PVLAAERFNELRARWEKVQRSLKR-----------NGRDHATTGK
QLEQMAEMFTLFKLVPRVYDELLRQVRNTLDVIRRHEREVMAAIKRGGMDRKDFIKTFPGNETNVEWADDMLRNKKKLDQDRFNVVKDDILRTQKRILQI
SEAAGLPVADIKEINRRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVQRQMLQEMGREPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDANIESPVDSATMLGLEEATREV
LANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|U7HY55|U7HY55_9GAMM RNA polymerase sigma factor RpoD OS=Alcanivorax sp. PN-3 GN=rpoD PE=3 SV=1
-------------------MTTQKQQQQSQLKQLIALGKEQGYLTYAEVNDHLPESI--TDQVEDIIQMINDMGITVVEKATDADEIMGEG-ADS---DE
VAAEEAAAV---------L--ASVESEPGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGTREVMHALAFWPGAVEMVLDEYDRILSEERKLTDVIA
GYLDPDDDGAAATNANKE---P-------RFDSTDSDDDGEEDEGGLD-------PALAAERFGELKKRYEKAERALKR-----------NGRDHASSAK
ALEALAEHFTLFKLVPRIYDQLLQGARTHLDIVRKFERQIMAAIRRAGVPRKDFVQQFPGNETNLEWVAAHAKTKKKDYSERLLAVAEDIQRNQRKIITV
EEVIGLPVADIKEINRRISIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVQRQMLQEMGREPTPEELGQRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNVDSPVDSATSLGLEEATREV
LANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|K0NP22|K0NP22_DESTT RNA polymerase sigma factor RpoD OS=Desulfobacula toluolica (strain DSM 7467 / Tol2) GN=rpoD PE=3 SV=1
------------------KSGENLIMTKKELQKLIKKGEKTGSLSFAEINDAISHDL--LDHIEDIVMQFKELGIKLVDTEKETIKKAKKSTAKIK-KDD
DNKDLFSAK---------K--DRSDMEFGAVTDPVKMYLKEMGMVTLLSREGEIEIAKKIERGERDVLRAMLDCPIALSTIFMYGEKMEKKSMRPKHVLR
DVDEGDGV--VDE------------------------------------EKFLSSLNVIKELHRENQEKRDILLQE--NK-----------RSVSKEIYS
NTEIIFEELKKWRFESNVIDNIEKSIRNTITWFDKVDDLLEKCAKTFNVKTRKMLDQVSDETSFVQWATSI-SNSD-ITKDRAVILYQDICSILTQVAL-
KNEVKGDSKSLKQIVDCVDKGRRDADFSKRELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEMGKEPSPEEIAEKMEIPIEKVRRVLKIAKEPISLETPIGEEEDSHLGDFIEDKKFSIPSDAAIDFSLAEQTRKI
LATLTPREEKVLRMRFGIGEKSDHTLEEVGKDFTVTRERIRQIEAKALRKLRHPTRSKKLKTFIE-
>tr|E1Y9X1|E1Y9X1_9DELT RNA polymerase sigma factor RpoD OS=uncultured Desulfobacterium sp. GN=rpoD PE=3 SV=1
-------------------------------MDLISKGKKQGYITYDDLNEEMSDNI--IDKLDETFEVLDSNDIEIIDDNGKKADD---KT--------
-EK--KANQ---------S--ELAAANFGTVTDPVKMYLHEMSLVTLLSREGEVDIAKKIEDGEQEVLKAMVSTPIGMECIIDLGIQIECGSLRPKHVLK
DFDESDSY--VDE------------------------------------DNFVKMIYSIKDIHQKNNELFEQLYSLK-PD-----------KKIKKLISA
NNNEIFNLLKEWRLESGVLDRIESLMKGHIDWFESVVKNIMDCAAKINMSVTELKSNINSRINFLKCARSS---CK-LGKDDILSIYDEINKYSSMIDE-
EKKIRTDCQALKKVMSSVAEGRLNAKIAKSELTRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEQGREPSPEEIAEKMEIPLEKVRKVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMLPSDAAINQNLAEQTRKV
LATLTPREEKVLRMRFGIGERADHTLEEVGQDFQVTRERIRQIEAKALRKLRHPTRSRKLKNFIE-
>tr|S7U6K8|S7U6K8_DESML RNA polymerase sigma factor RpoD OS=Desulfococcus multivorans DSM 2059 GN=rpoD PE=3 SV=1
-----------------VN--GENAEDKAALKALIAKGKEQGYLTYDEINAVLPDEA--PDQLDETMVLFNDLDIDILGDKKQPMSNTKVKK--------
-DK--ASLD---------T--DTSVSEFGTVTDPVKMYLREMGMVTLLSREEEVEIAKKIETGEQEVLRALLDTTVGVDSILELGNEIESGTLRPRHVLR
DLDEGDTC--VDE------------------------------------KNFLSTIQSIREVDNENRAYREQLFSS--AP-----------DPIRRNISR
RNGKIFDYLKEWRLESSVIDNIETAIKEDIRWFTFMQGELVKCAESLGISVAEIRKGLEDKSVLAEDVRRK---GV-PDVAEIDVLIDKLQTIQDKIDA-
EFELKANCKALKRTMSNVEEGRQRAKDAKAELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMEISLEKVRKVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMLPSDAAVSLNLSEQTRKV
LATLTPREEKVLRMRFGIGEKADHTLEEVGQDFAVTRERIRQIEAKALRKLRHPTRSRKLKSFID-
>tr|A0A0A0DWN8|A0A0A0DWN8_9SPIO RNA polymerase sigma factor RpoD OS=Spirochaeta sp. JC202 GN=rpoD PE=3 SV=1
-----------------DAKTSKKKTTPKAIKSLLAKGKKQGYLTYDEINELLPEDM--PEQIDETLMLFYANNIEIIEEKHQKKVV--LKK--------
-EK--KTVA---------K--GVASSDFGTVTDPVKMYLREMGLVTLLSREGEVEIAKKIEAGEQEVLRALLESPVGVESIIALGGDIEDGALRPKYVLR
DIDEGDTY--ADE------------------------------------EKFLETIRGIKKLHEENKAFREKLYGR--KI-----------DAVKKSIAR
RANKIFELLKDWRLESSVIDDIENKIWHQIGWFDAKIRRSGEIADRLDVSVKELLENLNSKTKFVKWAGGK---IK-ISKDELGLFYRELKNGQEEIDA-
ELEIKANLRSLNKIMTNVDEGRFRAKLAKSELTKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEQGREPTPEEIAEKMEIPLEKVRKVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMLPSDAAVNMNLAEQTRKV
LATLTPREEKVLRMRFGIGEKADHTLEEVGQDFAVTRERIRQIEAKALRKLRHPTRSRKLKNFID-
>tr|A0A0F2QUQ7|A0A0F2QUQ7_9DELT RNA polymerase sigma factor RpoD OS=Desulfatitalea sp. BRH_c12 GN=rpoD PE=3 SV=1
-----------------TGGKSDRHMTEKAMKALIAQGKKQGFLTYEEINTALPDDM--SDQVDDTLMMFDDMGIDIIDENNRNLAK--KSK--------
-DP--DLKS---------D--EAGLTDYGSVTDPVKMYLREMGLVTLLSREGEVEIAKKIEAGEQDVLKALLETTLGVDFILDLGRRIESQLLRPKHVLR
DVDEGDTY--QDE------------------------------------EAFMSTIKAIAEVHAENMEFRQQLFDDQ-KL-----------KPIRRCITR
RNQKIFDMLKEWRLEGSVIDQIEEDIRTLIDWFDAMNRMVTAMAETLNVPVAVFRENLSAKNKFNKMVGKQ---GD-LTRNELEHLFDYVNDAQNQITT-
ESDIKANSRILKRILSSVDEGRARAKLAKSELIKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPRPEEIAEKMEIPLDKVRKVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMLPSDAAVSLNLAEQTRKV
LATLTPREEKVLRMRFGIGEKADHTLEEVGQDFTVTRERIRQIEAKALRKLRHPTRSRKLKSFIE-
>tr|A0A0M9E884|A0A0M9E884_9DELT RNA polymerase sigma factor RpoD OS=Candidatus Magnetomorum sp. HK-1 GN=rpoD PE=3 SV=1
-----------------KKTTRRKEALKKEIMALIEKGKNKGSLTYDEINEALPDEL--PEKIEETLLMFQSMNISIVDDTKKKSKEAPQKKA-------
-SV--SANA---------V--ATSLSDYGSVPDPVKMYLREMGIIGLLSREGEIEIAKKIETGEQEVLKALLETTIGIESIIILGEKLGEGEIRLKNVLR
DVDEGDTY--VDE------------------------------------ENFVKAIGDVKKIHEENKKYREILFGP--PI-----------DRVRRCINR
RNKKIFRQLKDWRLESEVIDVIEQKIREQIAWFDKQNKKLSEYASQMNITISELRSFWTDDNSFEEWITEK---TE--NKAQLTEYYLYAEGIHNQMQA-
EKFVKTNNQILKRVMNSVYSGRQNTKLAKSELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEMGREPTPEEIAEKMEFPLDKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFILPADAAISLNLAEQTRRV
LATLTPREEKVLRMRFGIGEKADHTLEEVGKDFAVTRERIRQIEAKALRKLRHPTRSRKLKSFIE-
>tr|B8FBL3|B8FBL3_DESAA RNA polymerase sigma factor RpoD OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpoD PE=3 SV=1
-----------------KAKSEEIKQAQAGLQELISKGKKQGYLTYDELNEALPEDM--SDQIDDTLMMFDEMDIEILDGKKITVSDSKMDDD-------
-DQDSEPEV---------P--KPDLLDAGGSSDPVKLYLREMGMVSLLSRDGEIEIAKKIEEGEQEVLKALLETTIGVEHLIDLRTEMAEGEVRLKDVLR
DVDEGENF--VDE------------------------------------ARISEILDSIAAIHQENMEFREKLFGSGPPL-----------DPVRRSVNR
RNRRIFALLKDWRLEHQVVSEIESKIYRQIDWFEAQHEGLNCCAQNLGVAVSDLRSHCSCLEDFCSWAGEC---CD-LEESQLKVCYYQVVEIQTSIRD-
ELALKANSLALKRVRACIWTGRGKAKDAKAELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAQKMEFPLEKVRRVLKIAKEPISLETPIGEEEDSHLGDFIEDKKFMLPSEAAISLNLAEQTRKV
LATLTPREEKVLRMRFGIGEKADHTLEEVGKDFSVTRERIRQIEAKALRKLRHPSRSQKLKSFID-
>tr|S0FW14|S0FW14_9DELT RNA polymerase sigma factor RpoD OS=Desulfotignum phosphitoxidans DSM 13687 GN=rpoD PE=3 SV=1
------------------SSEESGMIGKAEMEKLIEKGKKAGTLSFTEINDAISGNL--PEQIEDIVDQFKELGITLVDLDPPKNKPGTR--SSD-----
-KKDPFASV---------R--ERADLEFGAVTDPVKMYLKEMGMVTLLSREGEIEIAKKIEVGERDVLRAMLDCPISLNTIFLYGKKMERRSMRPKHVLR
DVDEGDGV--VDE------------------------------------EKFLESLAVIKQIHESSQDRRDQLYGL--RK-----------STLHQEINE
GTEQIFEELKRWRFESNVMDTIEKSIRNTIVWFDTVDKLLENCARTFNVMKDTMLKQASDPEKFVQWVTAR---AD-MSPERALLLHQDIQAVMDQVAS-
KALIKGDADDLRAITQGIDKGRRNADFAKRELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEMGKEPSPEEIAEKMEIPIDKVRRVLKIAKEPISLETPIGEEEDSHLGDFIEDKKFSIPSEAAIDFSLAEQTRKI
LATLTPREEKVLRMRFGIGEKSDHTLEEVGRDFTVTRERIRQIEAKALRKLRHPTRSKKLKTFIE-
>tr|C0QJZ9|C0QJZ9_DESAH RNA polymerase sigma factor RpoD OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rpoD PE=3 SV=1
------------------ETQENKAVSKEVLKKLIERGKKEGSLSYAEINEAISENL--SDQIDDIMVKFKQLGIDLIDTDKGEKPK-----------AD
DGKKSKFGK---------A--TAADMEFGTVTDPVKMYLREMGMVTLLSREGEIEIAKKIEVGEREVLKGLLASPIAVDHLLSLGGRMEASRLRPKHILR
DVDEGDGM--VDE------------------------------------EKFLACLDEIKALHLLNQEKRTQILAG--GL-----------EPMRDDIRS
KNEKIYELLKCWRFESGVVDKIEKSIRANIRWFDTMDDLLKRCSASFKARRDDMVDMLEDHDDFVAWVLER---SE-MDEARARVLHQDLCAITAQISV-
KDNVKGDAATLKKIIKGIDKGRMVAKYAKSELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEMGKEPSPEEIAEKMEIPLDKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFSLPSEAAINLNLAEQTRKV
LATLTPREEKVLRMRFGIGEKADHTLEEVGRDFTVTRERIRQIEAKALRKLRHPTRSRKLKSFIE-
>tr|I5B6C7|I5B6C7_9DELT RNA polymerase sigma factor RpoD OS=Desulfobacter postgatei 2ac9 GN=rpoD PE=3 SV=1
------------------RSEEGVMIGKDEMRRLIKKGEETGVLSFSEINDAISDDL--FEQIDDIVIQFQELGIELVGDRDEDTSANQGRAQSP--DDD
EGRDALSSR---------R--ERPDMEFGAVTDPVKMYLKEMGMVTLLSREGEIEIAKKIEVGEQDVLRAMLDCPLALNTIFMYGKKMEDKAMRPKHVLR
DVDEGDGM--VDE------------------------------------EKFLESLARIKTLHTQSQSYRDELENT--RK-----------GTLTEQIDC
NTEEVFELLKNWRFESNVIDNIEKSIRSTIIWFKTVDNLLARCAKTFNVQPSTMMKQTKDQAVFVEWATSR---SE-MTPDRAGTIFNDINSLCEQVAE-
KGLVKGSVDDLNAIVQGIEIGRKKADAAKRELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEMGKEPSPEEIAEKMEIPIDKVRRVLKIAKEPISLETPIGEEEDSHLGDFIEDKKFSIPSEAAIDLSLAEQTRKI
LATLTPREEKVLRMRFGIGEKSDHTLEEVGKDFTVTRERIRQIEAKALRKLRHPTRSKKLKTFIE-
>tr|A0A0G3G5R0|A0A0G3G5R0_9GAMM RNA polymerase sigma factor RpoD OS=Thioalkalivibrio versutus GN=rpoD PE=3 SV=1
---------------------MNREEQQSQLKELIAKGKEQGYLTYTEVNDHLPDSI--SDQVEDIIAMINDMGIAVHEQAPDADSLLSDGSVSA---DD
--AEDAVAA---------L--ASADSDFGRTTDPVRMYMREMGTVELLTREGEIRIAKRIEEGLMQVLFALAHHPGAIERLIREYDRIVENNGRLTDLVV
SFIDPNDHANGEAVARGL---V-------TPDAEEDEEAAEPVDTGPD-------PEEARERFEKLRKLHAKAHKAFEK-----------G--NREAYAV
AREATAKYFMEFKLIPRMVDQLTTQLHGSIDHVRRHERRIMAAVEQAQMPRKAFIDSFPKNETNLDWIKEACKA--GKYTNALAQHEEEIVRLQKKLAEI
EREASLNIAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREATPEELAERMEMPEDKIRKVLKISKEPISMETPIGDDEDSHLGDFIEDEKVASPSDSAAQESLTEATREI
LSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRAELLRTYTD-
>tr|L0E3B6|L0E3B6_THIND RNA polymerase sigma factor RpoD OS=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) GN=rpoD [H] PE=3 S
---------------------MNREEQQSQLKELIARGKEQGYLTYTEVNDHLPDSI--SDQIEDIIAMINDMGIAVHEQAPDADTLLSDGSVSS---ED
--AEDAVAA---------L--AAVDSDFGRTTDPVRMYMREMGTVELLTREGEIRIAKRIEEGLMQVLFALAHHPSAISQLLEQYQRLIENNTRLTDLVV
SFISPEA-GDGEAVARGL---A-------EPDSDADDSDEEVEDTGPD-------PEEARVRFARLAELHNAAQEACQR-----------K--DYEAYAR
AREETARYFMEFKLVPRVVDELTSNLHATIAQIRRYERQIMQVVAQARMPRKTFLDSFPKNETNLDWIEQAQKG--GKYTEQLAEVADEVVRLQKKLLEI
EKQANLSIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREATPEELAERMEMPEDKIRKVMKISKEPISMETPIGDDEDSHLGDFIEDEKVMTPVESAARAKLSEATREI
LATLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRAELLRTYMD-
>tr|Q2S8V3|Q2S8V3_HAHCH RNA polymerase sigma factor RpoD OS=Hahella chejuensis (strain KCTC 2396) GN=rpoD PE=3 SV=1
---------------------MSGNSRKSRLKELIARGKEQGYLTYAEVNDHLPEDI--PDQVEDIIRMINDMGIMVCEEAPDADTLITDGDS-T----E
SVAAEAAAA---------L--ASVENDVGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGLRDVMATLVYYPGTVSNILAAFDATQGEGGRVSDVIT
GFLDPVEDGVIPEANDEI---E-------SDEGDDNSDSDDDNDSGPD-------PEIARGRFAELREAFNTLNAAIDK-----------HGRASREAQE
CFDEVSRIFAPFKLAQKQFDEIINTIRVTNDSVRKYEREILNCTRDCKMPRKNFIKMFPGNETNLEWVKGLGARS-EEWAKTAQTKEEEITRLQRRIVSI
QNEVDLPVADIKEIHRRISIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRHMLQEMGREATPEELAKKMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSHAESPIDSATTEGLKESTRRV
LAGLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFID-
>tr|A0A017T7M1|A0A017T7M1_9DELT RNA polymerase sigma factor RpoD OS=Chondromyces apiculatus DSM 436 GN=rpoD PE=3 SV=1
-----------------AARPERAEKDRKALEKLVETGKSKGFLTYDEVNDALPPDV--PDQIDDVVGALGDEDIEIVDGA-TQV--IAPKRIADE--SD
--------R---------E--EEDVDYYSKSNDPVRMYLRKMGSVSLLTREGEVEIAKRIETGEQKVNAAILDSPIAVREIIDLGEKLRKHKIRVKEIIK
DAENDDQE--FDEEEAD--------------------------------RRIIRLIDKVKRLDKRKAELLDERKEGV--K-----------ADIDAEISQ
VNGELVTTLEEMRLNKRTIDKIVQKLKGLISKVEKAEAGATELEKRTGLSKGEIKRELAKVKGNRIAEARLARKLN-VTREDLLEWEATIKNAQKGLKKV
EEELNIDVEAIRRTYENIREGERMAEKAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSIISPADAVINMNLAEQTRKV
LKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKQLKSFID-
>tr|A0A0K1Q8V2|A0A0K1Q8V2_9DELT RNA polymerase sigma factor RpoD OS=Labilithrix luteola GN=rpoD PE=3 SV=1
------------------MANKNRNGNGKDTQQLMENGKSKGFLTYDEVNESMPADV--ADQMDDVMSVLGDEDIEIVDAA-TQV--IAPKRIVEEAGGE
--------K---------E--EDDGSYYSKSNDPVRMYLRKMGSVALLTREGEVEIAKRIEQGEHMILGAILNSPVAVREIIDLGDKLRKHKIRVKEIIR
DADDENAE--FDEEEAD--------------------------------RRILRLIDKVKHLDKVAQDLVAQLEA----S-----------AAVQEEIEA
NRSKMVETLEEMRLNKKTIDKIVLKLRTLIQKVERAESGSTELEKRTGVDWDVLRKEARAAKGDANGERKFKRKFG-IAPEEVLQNH---SASLKNLKKV
EEELQLDIKALRDTYHEIYTGERLAEKAKAELVSANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSIISPQENVINANLAEQTRKV
LKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKQLKSFIE-
>tr|I4C865|I4C865_DESTA RNA polymerase sigma factor RpoD OS=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) GN=rpoD PE=3 SV=1
---------------------MVDSKTKTEFKELFDLAKSKKYLTYDEINEHMPSSV--PAQIDELLVMMTDFNVEFVASEKKIPVLKKVRKLDEDKAEE
D-------D---------L--AADPESVVRGNDPVKMYLHEMGCVSLLTREGEVEIAKRIEHGEQQVFSVIIGCPVTIKEVLTLGDKLQKGTIRLKEVIR
GFEEEEMPDGDD-------------------------------------ERVLKLINEMKDFDAKYHSLEAKRSEE---T-----------DPLEQEMKS
CREQIVVCLKNVNLNTNMIDHIAGKLKFLVKKLETAQDELRAVCYELRVPPEKIEEHFAFLK-QMIERKPLKKVTN-LSPQKVFDLEKKYENSVRRIQKL
RAEAAMDEENLKAALMSCEEGEYLARKAKSELVQANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMEFPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKILSPSDAVVGMSLTEQTRKV
LATLTPREEKVLRMRFGIGERADHTLEEVGQDFDVTRERIRQIEAKALKKLRHPSRSKRLRPFIE-
>tr|H5SJD0|H5SJD0_9DELT RNA polymerase sigma factor RpoD OS=uncultured delta proteobacterium GN=rpoD PE=3 SV=1
-----------------VPNGQVKNRDRKEVQQLIELGKSKGHLTYDEINEALPADV--SDQIDELMGILGKEDIEVVDAQMIQM--VAPKRAAES-PDE
--------E---------D--DDLDGYASRSNDPVRMYLRKMGSVSLLTREGEVEIAKRIEEGENKVLESILQSPIAVQEILKIGEKVKNNKLRLKDVVR
DTDDE-EG--YNEEEVR--------------------------------KRIARVTDKVRKLWTHKTDLERELQENK-KL-----------SDIQEEIAK
IQREMVESLMELRLNKKQIDNVVAVLKRLIDQLERAEAPVTEAAKRLGVDPKELKKQLRTFEGADGRRQKIARQLG-TTVQELEELVETAKASSAKVRTV
AKEHGVTLEQLRKTYREIREGERMAEKAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSAISPSDAVINNNLSEQMRKV
LKTLTWREEKVLRMRFGIGEKSDHTLEEVGQGFEVTRERIRQIEAKALRKLRHPSRSKQLKSFIE-
>tr|B9YZG4|B9YZG4_9NEIS RNA polymerase sigma factor RpoD OS=Pseudogulbenkiania ferrooxidans 2002 GN=rpoD PE=3 SV=1
-----------------EQESMSLEDQRKRLRLLIALGKERGYLTYAEINDHLPEDVSDTEQIENIVTMITGLGIQVYDEAPDADTLMSDATPA-VA-DE
DAVEEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMIEAISACPGTISEVLALLERVEAGDIRVDEVVD
GFIDPNAEVEE-EVPFAE---P-------VDEEEEA---EEEDAEAISNANLEELKLQSLEHFALVRALFEELVVVLRK-----------QGNQSEEYRQ
LQGAITESFMKVRFATRQIESLCESLRSRVNEIRSYERDIQDCVTRVRMDRAHFIKYFPGNEINTDWVEDEIS-SGKPWSEALTRFKYAIIEKQTKLAEL
QDRAMLSIKDLKEINRQMSAGESKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGHEPDPAELAERMEMPEDKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDQNNLAPSDAAMYSSLKDATKEV
LETLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLD-
>tr|A8PL36|A8PL36_9COXI RNA polymerase sigma factor RpoD OS=Rickettsiella grylli GN=rpoD PE=3 SV=1
---------------------MDFEQQQSRLRELITHGKKQGFVTYAEINDHLLEDIISQLQLDEIILMLNDIGIPVYEVPPDMETLSSSIVNN--A-EE
ENSSENVTI---------L--GNITTELGRTTDPVRMYMREMGTVELLTREGEIKLAKRIEDGLQAILAALAQYPVNISHILNEYTRYEQQEIRLNDIIS
GFLDLEELSIPLELPSGK---N-------ITK--ISATDDD---EGFGELDGGPDPELAHTRFAELKAHYEAYIAAQKK-------------WHDKKTIK
QAVLLADAFTKFKLIPRQLDKLTRNMRGLLEKIRLQERIIMRCVNEAKMPRLLFINTFPKNETNENFLKKHIH-AKKSYSSRLKELLAPITAAQNKLHEL
EKTIGMTITEIKEINRQMSAGETKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQATGKEPSPEDLSKKMGLPEDKIRKILKIAKEPISMETPIGDEGDSHLGDFIEDAAALSPIDAATIEGLRETAQRV
LASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEPLRSFLD-
>tr|H3KGL4|H3KGL4_9BURK RNA polymerase sigma factor OS=Sutterella parvirubra YIT 11816 GN=HMPREF9440_01896 PE=3 SV=1
-----------------VDVPEEGAVSRNGYGALVRLGRARGWVTLSDVNDHLPESAT-TEHLQEVTEQLGRLGIQVFETPPDEDDIINGMMGDS----E
DVDDDDAAV---------M--LTPEESAGLSKDPLRAYLRGVGSHKLLTRAGEIEVAKSIEQFTGKLVAAMVQYPIAVEEILRVGETLRDENTPVDTIVD
GFLDGMVDAEGEPL------------------SDQDDNATDIGAAAMTTEQLEALRSRVLEMFDRCRIYLDIVKETYGDP-----------D-REKEYRT
ALTAMSKELGSVRFSVKLVTQISEHINTHMNGVNDTLKHMRSLVDRCHYSQKEAVQILTRNVTDKNLFPRLAEQDT-YAALNVARHMAILQEEQAKLVAA
EKAGFLSLDEQRDLGRAMKLAQANLMQAKAKMIEANLRLVISIAKGYVNRGLAMTDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWWVRQSVTRAVADFG
NTIRIPVHMTESYNKLRRQKQKFLQQNGRQPTEQELADLAGLPLAKVVLLTQAMRGVESIDAPIGDEEDATKLDFVRGDEADDPGIAFQDRSMIDCVKKS
LDELSPREAQVLRLRYGIGTNQDHTLEEVGRTLGLTRERVRQIESAAIRKLRGPEFQERLRDYLG-
>tr|Q7MP03|Q7MP03_VIBVY RNA polymerase sigma factor RpoD OS=Vibrio vulnificus (strain YJ016) GN=rpoD PE=3 SV=1
-----------------SWIPSMDHNPQSQLKLLVIRGKEQGYLTYAEVNDHLPAEI--SEQVEDIIQMINDMGIKVVETAPDADDLLSDETNIT---DE
DAAEAAAAA---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSSVAEYPGTIPYILEQFDKVQAEELRLTDLIS
GFVDPNADET---AAPTA---T-------HIDEDGDSSSDSEEDVGID-------PEMALEKFTQLRNSYQNLQLAVNE-----------HGRESAQTAQ
AHELMLDVFKEFRLTPKQFDHLVNELRTAMDRVRTQERLIMKAVEIAKMPKKSFIALFTGNESNEEWLDQILASD-KPYVEKIKLHEEDIRRSIAKLRAI
EEETSLSVNNIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATKDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A0A0ERI1|A0A0A0ERI1_9GAMM RNA polymerase sigma factor RpoD OS=Lysobacter concretionis Ko07 = DSM 16239 GN=rpoD PE=3 SV=1
-------------------MANERQAPQSDIKTLISKGLEQGYLTYAEVNDHLPDDM--AEQIEDVIALINGMGIEVHEVAPDADTLLGDSSASG-REDE
SAAEEAAAA---------L--TGLDAEGGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLNQVQASLGLFPSTIQLILQDYELHKAGKKRLAELLV
GFLDQLEDPTVAPPPAEA---M-------SVEDEEEDEVVDEGPTGPD-------PAEVTSRFEHLSELYAKFEKAYAKH----------GP-SHKSVTK
LREDMAEIFVTLKLPLPLTDVLVDNMRATQAEIKRHERRILEATRVAKMPRKDFIRSWDGNQTNLEWVDELLKRKQ-KWASGLRDVKDQIIAEQEATIAT
EQAMRMTLNDLREISRTMAYGETRARKAKREMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEHRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMEMPEDKVRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPVDATVNINLMETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0A0EX79|A0A0A0EX79_9GAMM RNA polymerase sigma factor RpoD OS=Lysobacter arseniciresistens ZS79 GN=rpoD PE=3 SV=1
-------------------MANERQAPQSDIKQLISKGLEQGYLTYAEVNDHLPDDI--PEQIEDIIGMINGMGIQVHEVAPDAETLLAGESGSG-RDDD
TAAEEAAAA---------L--TGLDAEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLNQVQASLALFPGTIDLVLQDYELHKAGKKRLAELLV
GFLDQLEDPTVAASPVTA---E-------TEDDEDEGGAADEGPTGPD-------PAEVEVRFEALSALYAKFEKAYAKH----------GP-AHKSVVK
LREDMAEIFVTFKLPLPLTDVLVRNMRDTVGQIKLHERRILEATRVAKMPRKDFIRSWDGNQTNLEWVDELLKRKQ-KWASGLRDVKDQIIAEQEATLAL
EQAMRLSLSDLREISRTMAYGEAKARKAKREMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEHRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVMSPVDATTDINLTETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0A0M774|A0A0A0M774_9GAMM RNA polymerase sigma factor RpoD OS=Lysobacter defluvii IMMIB APB-9 = DSM 18482 GN=rpoD PE=3 SV=1
-------------------MANERPAPQSDIKQLISKGLEQGYLTYAEVNDHLPDDI--PEQIEDVIAMINGMGIEVHEVAPDADTLLGDSSSSG-NEDE
STAEEAAAA---------L--TGLDAEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLNQVQASLALFPSTIELVLQDWELHKAGKKRLPELLV
GFLDLLEDPTVAASPATL---V-------DEDDDTASATTEEAPTGPD-------PAEVEHRFEALAELYGKFEKAYAKH----------GP-AHKTVTK
LRQDMADIFVTFKLPLPLTDVLVQNMRDTLADIKRHERRILEATRRAKMPRKDFIRAWDGNQVNLEWVDELLKRKQ-KWASGLREVRDEIIAEQQAILDI
EKQIRMTLGDLREVSRIMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEHRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREPTPEELAKEMEMPEDKVRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNAESPVETTTNINLSETVRDV
LGGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0J0YQG3|A0A0J0YQG3_9NEIS RNA polymerase sigma factor RpoD OS=Neisseria sp. KH1503 GN=rpoD PE=3 SV=1
-----------------DIRPLSLEEQRARLRQLIIMGKERGYITYAEINDALPDDMSDAEQIDNIVTMISGLGIQVTEQAPDAEDILSDNTAN-LTDDD
A-VEEAEAA---------L--SSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILALIERIRADEIKVDEVVE
AIIDPNEVLLNELGLSHL---E-------GTDDTDEDDSEGTDSEAMSAANLEELKQKVLEHFAGIQQDYDKMISALDK-----------HDSKHPSYLA
HRDAIAAKLLETRFATRQIESLSSNLRTRVDNIRKLEREIRDCLNNVHMDREYFINNFLPHATNLKWVEDEIT-KGRVWSDALGRFRHDIIEKQSEMAQM
EKEARISIEELKEINKNMVVSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDVNNVAPADAAMYSSLREVTKDV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLD-
>tr|C1DC42|C1DC42_LARHH RNA polymerase sigma factor RpoD OS=Laribacter hongkongensis (strain HLHK9) GN=rpoD PE=3 SV=1
-----------------AAPLDNTEERRKRLKQLIVQGKERGFLTYAEINDSLPEDVLDAEQIESIIGMITDMGIQVYDEAPDAEQLMSDATPV-VA-DE
DAVEEAESA---------L--SSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMVQAISACPGIVKDVLDQIEKVENDELRIDEVID
GIIDPNAPDEADARAEAE---L-------AADDGEEEENAEEGTPAAPGTNLEELKAQALEHFANVRKLYEKMVKALVK-----------HGPQSKQYLE
VQAEITETFLLVRFSARQVEALSDRLRSVVDDIRRNEREIQDCVQKCKMPRDVFLHTFVNNETNLEWVDAAMS-LGKAFASAIERYQHAIREKQSNLIAL
QDSSMLPIRELKEISRQMATGEAKARKAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPAELARRMDMPEDKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDLATMAPSDAAMYASLKEATKEV
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLD-
>tr|A0A0K0SY58|A0A0K0SY58_9PROT RNA polymerase sigma factor RpoD OS=Methylophilus sp. TWE2 GN=rpoD PE=3 SV=1
-----------------ATQALDAEARRTRLKTLIVLGKERGYLTYAEINDHLPDDVQDSEQIESIIGMINDMGIQVYEEAPDAEVLMSDAPPA-VT-DD
DAAEEAEQA---------L--ATVDSEFGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLKHMVQAIAACPTTIAQLLEMVDKVEKDEMSVDELVD
GLIDSDLGLDDALAAADV---E-------EEEDEDEDEDSDAKASAMSAEALAKLKDEVLSRFAVIRAANAKMNTIRQA-----------KGTNDGEYKT
LHQQVLDELTAFRFSAKQVEALCDQVRNMVEEVRTHERKIMECVDKANMPRQQFIKSFVGNEINLNWLDDELA-GKPAYGERLERFRHSILDQQERLQNL
QNRVGLPIKELREINKQMTTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMDMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDNTTLAPMDAAVYASLRDATSEV
LESLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLE-
>tr|A0A0B7IWE8|A0A0B7IWE8_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Methylopumilus turicensis GN=rpoD PE=3 SV=1
-----------------DKNEEQAVDGRTRLKLLIVLGKERGYLTYAEINDHLPDDVQDSEQIDGIIGMINDMGIQVYEEAPDAEVLMSDAPAA-VA-DE
DAVEEAEQA---------L--ATVDSEFGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLKHMVQAIAACPTTIAELLAMVDKVEADELSVDDLVD
GLIDSDVGMDDVITA--A---S-------DEEEEEEEDDDGAKAAAISAEALAKLKEEVLVRFAVIRESNKKMTVILAS-----------KGSQDPEYQA
LQAAILEELTVFRFSAKQVEGLCGQVRDMVERVRGHERKIMECVDKSGMPRPHFIKSFPGNECELTWLAGELA-VDKPYVEKLERFKHSIVDQQQRLLDL
QADVGLPIKELKDINKQMTTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKILKISKEPISMETPIGDDDDSHLGDFIEDNTTLAPVDAAVYASLRDATSEV
LESLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLE-
>tr|C6XA76|C6XA76_METGS RNA polymerase sigma factor RpoD OS=Methylovorus glucosetrophus (strain SIP3-4) GN=rpoD PE=3 SV=1
-----------------ETQISDADIRRTRLKSLIVLGKERGYLTYAEINDHLPDDVQDSEQIDGIIGMINDMGIQVYEETPDAEALMSDAPPP-VA-DE
DAVEEAEQA---------L--STVDSEFGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLKHMVQAIAACPTTIAELLAMVEKVEKDELSVDDLVD
GLIDSDVGLEEDIPVEAA---E-------AEDEEDDGDEDGAKAAAISAEALAKLKEEVLTRFAVIRQSHQKMTVILQE-----------RGSQDKEYQA
LQNAILEELTAFRFSAKQVEALCDQVRNMVEEIRGHERKIMECVDKSGMPRAHFIKVFPGNEGNLDWLAGELT-VNKPYVERLERFKHSIVDQQQRLLDL
QDRVGIPIKELKEINKQMSTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKILKISKEPISMETPIGDDDDSHLGDFIEDMTTLAPVDAAVYASLREATKEV
LESLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLE-
>tr|Q1GYU8|Q1GYU8_METFK RNA polymerase sigma factor RpoD OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpoD PE=3 SV=1
-----------------DITLNDADIRRTRLKSLIILGKERGYLTYAEINDHLPDDVQDSEQIDSIIGMINDMGIQVYEEAPDAEALMSDVPAP-VA-DE
DAVEEAEQA---------L--STVDSEFGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLKHMVQAIAACPSTIAELLAMVDQVEKGELGVDDLVD
GLIDADDGLGAEIVAEEA---A-------DADEEDEEDDDGAKAAAISAEALARLREEVLTRFAVIRSAHEKMTVLLAS-----------KGSQDKEYLK
LQATIIEELMAFRFSAKQVEALCDRVRGMVEEIRSHERKIMDCVEKAGMPRAHFIKSFPGNEGNPEWLAAELA-VNKPYVERLERFRHSIDDQQQQLLAI
QERVGIPIRELKEINKQMSTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKILKISKEPISMETPIGDDDDSHLGDFIEDVATLAPVDAAVYASLRDATKEV
LESLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLE-
>tr|D7DMS2|D7DMS2_METV0 RNA polymerase sigma factor RpoD OS=Methylotenera versatilis (strain 301) GN=rpoD PE=3 SV=1
-----------------ELQEASAEERRSRLKSLIVLGKERGYLTYAEINDHLPDDVQNSEQIDGIIGMINDMGIQVYEEAPDAEVLMSDAPPA-VT-DE
DAVEEAEQA---------L--ATVDSDFGRTTDPVRMYMREMGTVDLLTRESEIEIARRIEDGLKHMVQAIAACPTTIAALLALVDKVENDELSVDDLVD
GLIDSDVGAVADVVIEAA---E-------DEDIDEGEDEDGAKAAAISAEALAKLKEEVVNRFTVVRAANKKMTEILPL-----------RGSQDPQYQA
LLSEILVELTAFRFSPKQVEGLCDQVRDLVETIRSHERKVLDCVEKSGMPRLHFIKSFPGNESNLGWLAEELK-ADKPYIEKLIRYNHSILDQQQRLIDL
EKNVGIPIKELKEINKQMTTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGVEPDPALLAEKMEMPEDKIRKILKISKEPISMETPIGDDEDSHLGDFIEDGQTLAPVDAAIYASLRDATSEV
LESLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLE-
>tr|C6WZ16|C6WZ16_METML RNA polymerase sigma factor RpoD OS=Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) GN=rpoD PE=3 SV=1
-----------------QLQEVSAEERRIRLKSLIVLGKERGYLTYAEINDHLPDDVQGSEQIDGIIGMINDMGIQVYEETPDAEALMSDAPPA-VT-DD
DAVEEAEQA---------L--ATVDSEFGRTTDPVRMYMREMGTVDLLTRESEIEIARRIEDGLKHMVQAIAACPTTIAALLEMVDKVERDELSVDDLVD
GLIDSDIGLDDAMTEDTQ---D-------DEDE-DEGDEDGAKAAAISAEALAKLKEELLKRFEVVRAAHQKMTVILPV-----------KGSQDPVYLA
LLSEILVELTAFRFSPKQVETLCDQVRGLVETVRGHERKVLDCVEKAGMPRPYFIKSFPGNESNLAWLDDELK-LDNPYNEKLARFNHSILDQQQRIIDL
ETKVGISAKELKEINKQMTTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGIEPDPALLAEKMEMPEDKIRKILKISKEPISMETPIGDDEDSHLGDFIEDSTTLAPVDAAVYASLRDATSEV
LESLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLE-
>tr|A0A0D6EWL3|A0A0D6EWL3_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Methylopumilus planktonicus GN=rpoD PE=3 SV=1
-----------------DANPQAVEERRARLKTLIVLGKERGYVTFAEINDHLPDEIQESEQIEGIVSMINDMGIMVYEQAPDAEALMADVPPP-VT-DE
EAAEEAEQA---------L--ATVDSEFGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLKHMVQAIAACPTTITELLAMVDKVEANELSVDEVVD
GLIDVEVEAPI--V--AA---E-------AEDVEEDDDADGAKAAAISAEALAKLREEVLTRFAKIRKTNQKMNDIRIK-----------KGIDAPAYKK
LHESVLKELMEFRFSAKQVEALCDSVRNRVNQIRIHERKLMDSVEKSGMPRTHFIKSFPGNETNLNWLTDELK-LDKAYNAKLERFKHSIVDQQDQLIAI
EKEAGLSIKDLKEINKQMTTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQSTGAEPDPSVLAEKMEMPEDKIRKILKISKEPISMETPIGDDEDSHLGDFIEDAATLTPIDAAVYGSLRDVTAEI
LESLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLE-
>tr|Y0KK43|Y0KK43_9PROT RNA polymerase sigma factor RpoD OS=Methylophilaceae bacterium 11 GN=rpoD PE=3 SV=1
-----------------ALQAMDAEARRTRLKSLIVLGKERGYLTYAEINDHLPDDVQDTEQIDSIIGMINDMGIQVYEETPDAEVLMSDAPPP-VA-DE
DAVEEAEQA---------L--ATVDSEFGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLKHMVQAIAACPTTIAELLALVDKVEKDEISVDDLVD
GLIDSDIGLEDALAVEDA---E-------HEDDEEDDDEDGAKAAAISAEALAKLKEEVLARFAIIRTANAEMNVIRDT-----------KGSQDAKYKA
LHQSVLDELTAFRFSAKQVEALCDQVREMVEEVRSHERKVMDCVEKSGMPRPHFIKSFPGNEINMAWLDEELA-QNKPYAERLSRYRHSILDQQDRLMTL
QNRVGIPIKELKEINKQMTTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKILKISKEPISMETPIGDDEDSHLGDFIEDNTTLAPMDAAVYASLRDATSEV
LESLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLE-
>tr|E5UIK2|E5UIK2_NEIMU RNA polymerase sigma factor RpoD OS=Neisseria mucosa C102 GN=rpoD PE=3 SV=1
-----------------DNRPLSIEEQRARLRQLIIMGKERGYITYSEINDALPDDMSDAEQIDNIVSMISGLGIQVTEQAPDAEDILSDNAAA-LTDDD
A-VEEAEAA---------L--SSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILALIEQVRNDEIRVDEVVE
AIIDPNEVLLNELGLGHL---E-------NTDE-DDEDDSGSDSEAMSAAHLAELKQKVLEHFAFIESEYGKMIKQLEK-----------HGSQHANYLK
HRDAIANKLLEVRFATRQIENLSSNLRSRVENIRKLEREIRDCIDRVRMERDYFIENFLPAITDLEWVEKEVA-KGRVWANALDRFRHAILEKQAELANM
ETETRISIEELKEINKNMVLSEKETSAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPAEAAMYTSLHEVTKEI
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLD-
>tr|A0A0N0GQ86|A0A0N0GQ86_9NEIS RNA polymerase sigma factor RpoD OS=Amantichitinum ursilacus GN=rpoD PE=3 SV=1
-----------------EDQQLDAEARKAKFKSLIVLGKERGYLTYAEINDHLPEDMLDAEQIEGVISMISNMGIQVYDEAPDAEDLMSDATPA-VA-DD
DAVEEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMIQAISACPTTITQILELVDKGLNDEIRIDDIID
GFIDPNAVEEVAQPPVEV---V-------E-AEETEEEDEDADGSAVSAANLELLKGQAREHFDVVRELYAQMVASLQK-----------DGVQGKGYQA
AQQGIADQFQNIRFSARQVEALCDQLRSMVDEIRGYEREIMDCTQKVRMPREHFIKTFPGRETDLDWVQEELS-SGQKYAEVLERYQHAIVEKQGRLKEL
QEKAMLPIKELKEINRQMSTGEAKARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRIQRQILQETGLEPTPDELATRMEMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDAVTVAPAEAAVYAGLREATREV
LDTLTPREAKVLRMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLKSFLE-
>tr|A0A0K6GSX8|A0A0K6GSX8_9NEIS RNA polymerase sigma factor RpoD OS=Gulbenkiania indica GN=rpoD PE=3 SV=1
-----------------SQAPMSLEEQRKRLRQLIALGKERGYLTYAEINDHLPEDVSDAEQIENIVTMIQGLGIQVYDEAPDAETLMSDATPA-VA-DE
DAVEEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKYMIQAISACPGTIAEVLALYERVEKEELRIDEVVD
GFIDPEAEAAEEEVPFAE---P-------AEEDEE--EGEEADPSAVNSANLEELKRQAAEHFTRVRALFEKMIKALKK-----------EGHKGENYLA
LQEAITEEFMKIRFSTRQIESLCDSLRSSVNEIRSYERDIQDCVSRVRMDREHFIQTFPGNETNLEWVEGEID-SGKPWSEALQRFQYAIIEKQSKLAAL
QERTMLPIKALKEINRQMSTGESKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGREPDPAELAEKMEMPEEKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDSVTMAPSEAAMYSSLKDATKEV
LDTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLD-
>tr|A0A0J5GEI0|A0A0J5GEI0_9NEIS RNA polymerase sigma factor RpoD OS=Vogesella sp. EB GN=rpoD PE=3 SV=1
-----------------ATEPMSIEEQRKRLRMLIALGKERGYLTYAEINDHLPEDVSDTEQIENIVTMIGGLGIQVYDEAPDAETLMSDSTPA-VA-DE
DAVEEAEAA---------L--SSVDAEFGRTTDPVRMYMREMGSVELLTREGEIVIAKRIEEGLKNMIQAISACPGSVAQVLGLIAKVEAGEMRIDEIIE
GIIDPNAEEATEEVPFAE---P-------AS-EEESEEDEEANQARINEANLEELKQQALAHFAEVRTLYDQLLKTLAK-----------HGFGSKQYNE
VQDAISAQFMLVRFSTRQIESLCESLRSSVNDIRKLEREILDCVSRVRMDRKHFVSQFPGNECNLDWVEREIA-AGKPWSDVLSRFKYAIIEKQSKIAEL
QTLSMLTINELKEINRQMSSGETKARLAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGREPDPAELAEKMEMPEDKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDSVTVAPAEAAMYSSLRDATKEV
LDSLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLD-
>tr|A0A0J6RDX2|A0A0J6RDX2_9NEIS RNA polymerase sigma factor RpoD OS=Chromobacterium sp. LK11 GN=rpoD PE=3 SV=1
-----------------ETEVMSLEEQRKRLRQLIALGKERGYLTYAEINDHLPEDVSDAEQIENIVTMISGLGIQVYDEAPDADTLMSDATPP-VA-DE
DAVEEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKYMIQAISACPGTIAEVLELVERVGRDEVRVDEVVD
GFIDLNAPSED-EAAFAE---P-------ADEEEDEEEDEDGDAADAAGVNLEELKQQALEHFTGVRMLFDKMVKVLSA-----------KGAQSKEYLE
LQDAITTEFMLVRFSTRQVESLCDSLRSRVNEIRTYERDIQDCVSRVRMERAHFIKVFPGNETNLDWVEDEIH-SGKAWAEALTRFKYAIIEKQTKLSEL
QDRAMLPIKALKEINRQMSAGESKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGHEPDPAELAEKMEMPEEKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDQNNLAPSDAAMYSSLKDATKEV
LDTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLD-
>tr|A0A066TJ96|A0A066TJ96_9NEIS RNA polymerase sigma factor RpoD OS=Snodgrassella alvi GN=rpoD PE=3 SV=1
-----------------DSRPLTAEEQRARLRQLIIQGKERGYITYAEINDALPDEMSDADQIDNIVSMISGLGIQVTEEAPDAESLMGDNTAN-MTDDD
A-VAEAEAA---------L--SNADNEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALRNMIQAISACPGSVAEILTLIDAIRKDEIKVDEVVE
AIVDPHEELLDELGIGLN---S-------KNVDDTEEESDEENAALVASANLEELRQKTLEHFDGIQSLYEAMVVVLQE-----------KGSRHADYLK
LQQEIAEQLLQVRFATRQIESLCDNLRMRVNQVRQLEREIRDALNRVHMERDYFIKSFANRTTDLGWVDEELS-LNRVWNEALSRFQYAIVEKQTELANL
EQTAQISLDELKQINKNMIKSEQETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQENGEEADSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPSDAAMYSSLREVTKDV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLD-
>tr|A0A0P7LAK2|A0A0P7LAK2_9NEIS RNA polymerase sigma factor RpoD OS=Neisseria sp. 74A18 GN=AKG43_08740 PE=4 SV=1
-----------------DNRPLTLEEQRARLRQLIIMGKERGYITYSEINDALPDDMSDAEQIDNIVSMISGLGIQVTEQAPDAEEMMSDNTAA-ITDDD
A-VAEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILELIKRIREDEIKVDEVVE
AIIDPNEVLLNELGLGHL---E-------SAGD-SDDDEDDSSPEAIAATNLEELKQKVLEHFERIQEDYDKMIAALSK-----------HDSRHETYLQ
HRDAIASKLLEVRFATRQIESLSSNLRERVESIRRLEREIRDCLDRVHMDRDYFINYFLPEITRLDWVEEEVA-KNNVWSNALDRFRHAIIEKQAKLAEM
ETETRISIEELKEINKNMVISEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDVNNVAPADAAMYSSLHEVTKEV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLD-
>tr|C0DX87|C0DX87_EIKCO RNA polymerase sigma factor RpoD OS=Eikenella corrodens ATCC 23834 GN=rpoD PE=3 SV=1
-----------------SNRPLTPEEQRARLRQLILQGKERGYITYAEINDALPDDMSDAEQIDNIVNMISGLGIQVTEETPDSETLMADNTAN-MTDDD
A-VAEAEAA---------L--SSADSEFGRTTDPVRMYMREMGQVDLLTREDEIVIAKKIETALRNMIQAISACPGSVAEILELIEKVRNDEIRVDEVVE
DIIDPHEELLDELGIGVD---K-------AEEDADEEDADEEDAGAISAANLEELKQKVLAHFEDIQATYKKMVAALQK-----------HHSQHKTYLN
LRNYIADQLLNVRFTTRQIETLSNNLRTRVDSIRRLEREIRDCLNRVHMDRDYFINNFLPNITDLNWVEAEIG-KNRVWSEALSRFQYAIIEKQNILIEQ
EQHAQISIAELKEISKNMVANEKETAAAKREMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEDPDAAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDVNNIAPADAAMYSSLREATKDV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLD-
>tr|L1NQL3|L1NQL3_9NEIS RNA polymerase sigma factor RpoD OS=Neisseria sp. oral taxon 020 str. F0370 GN=rpoD PE=3 SV=1
-----------------ENRPLTPEEQRLRLRQLILQGKERGYITYAEINDALPDDMSDAEQIDNIVNMIQGLGIQVTEEAPDADTLMNDSGTG-MTDDD
A-VEEAEAA---------L--SSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMIQAISACPGSIAEILDLIEKIRADEIKVDDVVE
AILDPNEVLMHELGVSDL---E-------IIGDGEEGDEDESSEENLESINLEELKQEVLAHFSGIGESYGLMIAALNE-----------HNSRHPDYLK
HRDAIAHKLLEVRFATRQIESLSNNLRQKVDNIRKLEREIRDCLDRVQMDRDYFISQFLPNITDLDWLEGEIG-RKRVWSNALERFRHAILEKQTEVAEM
EKTAQISIEELKEISKNMQSSERETARAKEEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQEHGEDPDSAKLAELMEMPEEKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDVNNVAPAEAAMYSSLREVTADV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLD-
>tr|G4CEX2|G4CEX2_9NEIS RNA polymerase sigma factor RpoD OS=Neisseria shayeganii 871 GN=rpoD PE=3 SV=1
-----------------GNRPLTPEEQRARLRQLILLGKERGYITYAEINDALPDEMSDAEQIDNIINMISGLGIQVTEEAPDAESLMGDNTAN-MTDDD
A-VAEAEAA---------L--SQADSEFGRTTDPVRMYMREMGQVDLLTREDEIVIAKKIETALRNMIQAISACPGSVAEILELVEKIRKDEVRVDEVVE
DIIDPHEELLDELGIGVA---A-------KEEDGDD-DEEESDSSAISAANLEELKQKVLNHFEGIAGSYKKMVAVLKK-----------HDSRHANYLA
LRSEIADQLQNVRFATRQIEALSSSLRKRVDNIRRLEREIRDCLDRVHMDRDYFIASFLPQPTNLAWVEEEIA-KKRVWSEALARFQYAIIEKQTELADL
EKQAQISIEELKEISKNMVVSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEDPDAAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDVNNVAPADAAMYSSLRDVTRDI
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDRLKSFLD-
>tr|G2DPD0|G2DPD0_9NEIS RNA polymerase sigma factor RpoD OS=Neisseria weaveri LMG 5135 GN=rpoD PE=3 SV=1
-----------------DNRTLSPDEQRTRLRQLIIMGKERGYITYSEINDALPDDMSDAEQIDNIVSMISGLGIQVTEQAPDAEDILSDNAAG-MTDDD
A-VAEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSISDILELIERVRADEIKVDEVVE
AIIDSNEVLLNELGLGHL---E-------QSSDPDEEDVDEADAEAISATNLEELKAKVLDHFEQIRTDYDKMVVQLKK-----------HDSRHPSYLK
HRDAIAAKLLEVRFATRQIENLSSSLRNRVENIRKLEREIRDCLERVHMERDYFIQNFLPSITDLDWVNNEIN-KGRVWSNALDRFRHAIIEKQTFLSDM
EKQAQISIEELKEINKNMVVSEKETSAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQENGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDINNVAPADAAMYSSLREVTKDV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLD-
>tr|G4CPV2|G4CPV2_9NEIS RNA polymerase sigma factor RpoD OS=Neisseria wadsworthii 9715 GN=rpoD PE=3 SV=1
-----------------DNRPLTPEEQRARLRQLIIMGKDRGYITYAEINDALPDDMSDAEQIDNIVNMIQGLGIQVTEEAPDADTLMNDNSTG-ITDDD
A-VEEAEAA---------L--SSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMIQAISACPGSIAEILALIEQVRNDEIKVDEAVE
AIIDPNEVLLNELGLGHL---E-------TASED---EDEEDNGGTLENTNLEELKQKVLEHFDGINESYEKMIAALDK-----------YDSKHPKYLK
HRDAIANKLLEVRFSTRQIENLSSNLRNNVDQIRKLEREIRDCLDRVHMDRDYFIASFLPNTTNLDWVGEEIS-KNRVWSDALSRFQHAILEKQTEMAGM
EKQARISIDELKEINKNMVVSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRIARQYLQDNGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDINNVAPSDAAMYSSLREVTKDV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLD-
>tr|Q3SGA9|Q3SGA9_THIDA RNA polymerase sigma factor RpoD OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpoD PE=3 SV=1
-----------------ELTPVEAEARRTQLKNLIILGKERGFLTYAEINDHLPDEVLDADQIEGVISMINDMGIQVYDEAPDAETLMQEAAPA-VA-DE
DVVAEAEQA---------L--TTVDSEFGRTTDPVRMYMREMGSVDLLTREGEIEIAKRIEEGLRHMVQAISSCPLTIQQILDMAAQVEKDELRIDELID
GFVEAETEAAAEEETAAG--------------DDETDEDDEDASAAVAAANLAQLKAEALAQFDYIRKAYKKAQNAHVK-----------YGL-SAQHMK
AQAEVTELLMAIRFSVRQVDNLCEQIRSAVEEVRSHERKIMECVNRSGMPRAHFIKAFPGNETNLAWLDREIA-AKKAYCSTLSKVQYEVKAHQEALIAM
QDRVGLPIKNLKDINKQMSTGEAKARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGIEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDEDSHLGDFIEDASTLSPDDSAIYANLRDATREV
LDSLTSREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEKLKSFVG-
>tr|E6QWG8|E6QWG8_9ZZZZ RNA polymerase sigma factor rpoD (Sigma-70) OS=mine drainage metagenome GN=rpoD PE=3 SV=1
-----------------LAAQEEAELRRARLKSLIIIGKERGYLTYAEINDHLPDDMLDAEQVEGVVGMINDMGIQVYDEAPDVEVLMSDAAPA-VA-DE
DVVAEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMVQAISACPTTLEQILSLVDKVERDEIRIDEFVD
GVVVCEAELVEAAANLAA---A-------AAAIEEDVEDEDADGSALAAANLAQLKTDAMERFVRLREAVKRKQSALKR-----------HGHTSKQYLD
IQAEVSGILMELRFSAKQVEALCNMIRELVETIRSREREILDAVRRAGMPREYFIKVFPGKETDLEWLQEQAN-TGSVWCEGLLRQKYAIHERQNSLRDL
QERVGLPIAALKEINRQMSAGEVRTLRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPDPSELAEKMEMPEDKIRKILKISKEPISMETPIGDDEDSHLGDFIEDTSTLAPMDAAIYDSLQEVTKDI
LDSLTQREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDRLRSFVD-
>tr|R7IH14|R7IH14_9BURK RNA polymerase sigma factor RpoD OS=Sutterella sp. CAG:351 GN=rpoD PE=3 SV=1
--------------------------------------------------------MVEQDDIDQVVATLSDLNIQVFDQAPDAESMLNDNAVT-DS--D
S-DDEADAA---------L--SSMDGEFGRTTDPVRMYMREMGSVELLTREGEIAIARRIEDGLGHMVTAISTSPTTIREILADAKRIREGTLSIDEVVD
GINDPENEKKD-DFA-------------------------DIGASGMTAGQLEELKERVLKIFDRVGKQFEEIKAIYER-----------DRSRSPAFIE
KQEEIRKELSQVRFTAKAVDRLCGTLRKTIEQIRNIEKEIKGAVDRSGIDLNFFLSDFMKHETDLNWGKRLLE-SGKPFVPVFRRNLPAIEQLQQRLIDM
EVEALLPIQDLRDIYKQMATGEAKARNAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRITRQVLQETGQEPDPSELAEKMQIPEDKIRRILKIAKEPISMETPIGDDEDSHLGDFLEDTETEAPAEAAQNENLEEAIKQV
LDSLTPREAKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFID-
>tr|S6AN61|S6AN61_9PROT RNA polymerase sigma factor RpoD OS=Sulfuricella denitrificans skB26 GN=rpoD PE=3 SV=1
-----------------ELRMSDVDARRMRLKTLIVLGKERGYLTYAEINDHLPDDMLDAEQIEGIISMIGDMGISVCDEAPDAETLMSDAAPT-VT-DE
DVVEEAEAA---------L--STVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVQAISACPTTITEILALVDKVERDEMRVDELVD
GLMNADGE--LEEDIADS---A-------VEAEELTEEEEEEAGAAVAAANLAQLKADALERFAVIRKAFDKMQQSLAK-----------KGPKAKGYKE
WQEQVSGELLSIRFSAKQVEFLCESLRSLVEEVRSYEREIMECVTKSGMPRTHFIKTFPGNENNLDWVLTEIA-TKKPYCEKLTRFQHSIVDQQQRLLDL
QERVRIPIKDLKEINRQMSTGEAKARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPDPSELAEKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDSTTLAPADAALYASLREATKEV
LESLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLRSFLD-
>tr|B6BW94|B6BW94_9PROT RNA polymerase sigma factor RpoD OS=beta proteobacterium KB13 GN=rpoD PE=3 SV=1
------------------SNPKEAENRRNQLKALIILGKERGYLTHAEINDHLPDEISETDQVDEIISIIHDMGIRTYDEAPDAENLMDDAPAP-VT-DE
EAAEEAEQA---------L--ATVDSEFGRTTDPVRMYMREMGKVGLLDKKEEIEIAKRIEDGLKHMVQAISACPGIIDDLMQMGDKVKAGELSVDEFVD
GLIDLEAEKELNEALGMN---D-------EEDDDDDDSSSSDNGKGMSSEDLKVLTEEVLKRFKKIKSAHKKLALLREKN----------KWIDDPEYKK
HQDVIQKELLNFRFSAKLVEVLCDKVRQFIVQIRSHERTIMDCVNQAKMPRTQFIKSFPGNETSNKWLKVEMK-EDKPYIANLEKLKHSILDQQAQLKEL
EDFSGIPIKNFKEINRQMTRGESRARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQATGQEPEPAVLAEKMEMPEDKIRKILKISKEPISMETPIGDDEDSHLGDFIEDLGTLTPDDAAVYSSLRNVTNEI
LEGLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLE-
>tr|A0A0R2V7F2|A0A0R2V7F2_9GAMM RNA polymerase subunit sigma OS=OM182 bacterium BACL3 MAG-120920-bin58 GN=ABS29_04130 PE=4 SV=1
-----------------VNNPEEAENRRLQLKALIIMGKERGYLTYAEINDHLPDEVSESEQVEGIIGIINDMGIMVYDQAPDAESVMSDDRPP-VT-DE
EAAEEAEQA---------L--ATVDSEFGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLRHMVQAISACPGIIDDLMNMADKVKKEELGVEEFVD
GLIDMEAERELAKVEAAL---A---------DEDDDDENDSGKASGMSVEDLAILTKEVLSRFGKIKKAHKKLSELREQK----------KWTDDEEYKK
HQDIILKELINFRFSSKFVEVLCDKVRVFVKQIRGHERSVMECVDESKMPRAHFIKSFPGNETNLKWLKEEIK-SDKKYVEGLEKLKHSILDQQSKLIAL
EELAGIPIKNFKEINRHMTTGEARAKRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQSTGQEPEPSELAEKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDVGTLTPDDAAVYGSLRSVTSEI
LEGLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLKSFLE-
>tr|A9H1N5|A9H1N5_GLUDA RNA polymerase sigma factor RpoD OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpoD PE=3 SV=1
-----------------DNDTTLLDTQSGAVKRLIARGKERGYITFDELNAVLPQDQ--SEQIEDVMAVLSEMGIQVVENEDNDDSENREEK----EADT
E--EAGGAA---------G--NVDTESLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHERLKAGEMLLRDIVD
LQSGGAEAEAGAEGGEQ------------ED-APESEDGEEGDSAGLSLALEEKLKPEILAQFEEIEELYSRLQKLQSKR----------LGASEKSYEK
LREELVGKVQQVHLHNTRIEVLVQHLKEIFQRLNGLEGRMLRLAESTKVSREDFLIKYRGSELDPGWMDMVSALPGKAWKNFVAKHSASVLDLRGQVASL
SQETGLPVGEFRRVYATVSRGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|G2I5L2|G2I5L2_KOMMN RNA polymerase sigma factor RpoD OS=Komagataeibacter medellinensis (strain NBRC 3288 / BCRC 11682 / LMG 1693 / Kondo 51) GN=rpo
-----------------DNDTTLLDTRSGAVKKLIARGKERGYITFDELNAVLPQDQ--SEQIEDVMAALSEMGMQVVENEDNDDTEPAAPE----TAEE
E--SEEPAA---------G--NVDTESLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHERLKAGEMLLRDIVD
LQSGGNDPAEAAEGEDA------------FAEETEGEGEGEGEGAGLSLALEEKLKPEILEQFEEVEALYQALHRVQAER----------LGSEESRYEH
LRLELVGKVQQVHLHNARIEVLVEHLKEIFQRLNGLEGRMLRLAESTRVSRDDFLLKYRGRELDPGWMDMAAALPGKSWKNFIAKHGETVIRLRNQVADL
TQETGLPVGEFRRVYATVSRGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKAAVIPLDAAIQTNLREATTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A4EDG1|A4EDG1_9RHOB RNA polymerase sigma factor RpoD OS=Roseobacter sp. CCS2 GN=rpoD PE=3 SV=1
------------------DGDISLDMSQTAVKKMIADARERGYITYDQLNAVLPPEQ--SDQIEDVMSMLSEMGIQVTEEEESEETE---NQGN------
-AGSREVTL---------G--GAEAEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILLRDVID
LFGNQLGEDGEEETVVA------------APKDD---DDDEEDQANMSLAMEAALKPRVLETLELIARDFAALSDMQDAR----------MDSQEKKYQK
LRSEIVELVNSLHLHNNRIEALIDQLYGINRRIMSIDSSMVKLADQARINRREFIEAYRGRELDPNWLDDMGEKSGRGWQMMIEKSTGKIEELRGDMAQV
GQYVGVDITEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|M9RKT1|M9RKT1_9RHOB RNA polymerase sigma factor RpoD OS=Octadecabacter arcticus 238 GN=rpoD PE=3 SV=1
------------------DADHSLDMSQAAVKKMIAEARERGTITYDQLNAVLPPDQ--SDQIEDVMSMLNEMGIQVTEEEESEEVD---DGTS------
-AGRRDVIL---------G--GAEAEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILLRDVID
LFGDQLAEETGESAVVS------------A-KDD---DDDEEEAANLSLAMEAQLKPQVLDTLEVIAKGFAKLSDMQDSR----------MDDEEKKYQK
LRSEVVALVVSLHLHNNRIDALIDQLYGINRRIMQIDSNMVKLADQSRINRREFVDAYRGRELDPTWLEEMGQKAGRGWQMLIERSTTKIEELRAEMAQV
GQYVGVDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRRLRSFLD-
>tr|A0A0Q5NVK9|A0A0Q5NVK9_9BURK RNA polymerase subunit sigma-70 OS=Burkholderia sp. Leaf177 GN=ASG35_10610 PE=4 SV=1
-----------------TVSPEQADERQKQMRALIQLGKQQGYLTHAEINDHLPGNFAQTSAIETIVSTFRDMGVAVYEEAPDSETLLNDSTPT-AVSDE
QSDEEAEVT---------L--ATVDSEFGRTTDPVRMYMREMGSTELLTRAGEIEIAKRIEDGLGEMIKAAFACPSTVVTLLTTVDKVVAGELRIDELVD
GFKDVSTLDEAAVDESDA---E-------IDSDDEEGETEDEQATRANATRLKHLLRDCLPLFVNVRDQFDAFHAAYSA-----------DDARTGDWPT
VQEHIQNELATVRFTARTIDRLCAEVHEQVEQVRAIERRILKAVDLAGMPREKFVEVFPGHETDLEWTMRHAS-ASNSYGKALERALPAIQAEQQKLIEI
EAQLMLPLSQLKALNKQMTSAEHKMRQAKREMTEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQG
RTIRVPVHMIETINKLNRVSREILQQTGQEAHPSVLAVRLDLSEEKVRSILKIARQPVSLETPLGEDGDTTLGDMVEDSATESPADAAMHADMRLAIKDA
LDSLSPREAKVLRMRFGIDTVSDHTLEEVGKQFDVTRERIRQIESKAMRKLVHPSRSEKLRSFLA-
>tr|A0A017HQ83|A0A017HQ83_9RHOB RNA polymerase sigma factor RpoD OS=Rubellimicrobium mesophilum DSM 19309 GN=rpoD PE=3 SV=1
------------------DGDISLDMSQAAVKKMIAEARERGYITYDQLNAVLPPDQ--SDQIEDVMSMLSEMGIQVTEEEESEEVE--ELQGS------
-GGNRDVAL---------A--GAETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFHAITIWRDELLSEDILLRDVID
LFGTQLDTDQDMEPLVD------------AGRED---EEEDDDQSNMSLAMEATLKPRVLETLESIARDFATLSEMQDAR----------MGGDEATYQK
LRGEIVALVNSLHLHTNRIDALIDQLYGINKRIMTIDSAMVKLADQARINRREFIDEYRGSELDPAWLDRMGQKAGRGWQMLLERSREKIEELRGEMAQV
GQYVGVDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D6TFA6|A0A0D6TFA6_9RHOB RNA polymerase sigma factor RpoD OS=Paracoccus sp. 361 GN=rpoD PE=3 SV=1
------------------DNAHTLDMSQAAVKKMIAEARERGYITYDQLNAVLPPEQ--SEQIEDVMSMLSEMGINVIEDDDAAEES-----EG------
-SGSRELAV---------S--ASETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFKAITLWREELLDEEILLRDVID
LFGQSMDDEEAEEVELTV---E---------VEDD--ED-EDEGANLSLAMEASLKPKVLETLEAIAHHYEGLADMQDQR----------MDNAESDYQN
LRSEIVVLVNSLHLNSGRIEALVDQLYGINRRIVTIDSGMVKLADAARINRREFIDAYRGSELDPNWVDRMSAQAGRGWQALFDRSRDQVERLRGDMAEV
GQYVGVDIEEFRRIVAQVQRGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|F9Y7E3|F9Y7E3_KETVW RNA polymerase sigma factor RpoD OS=Ketogulonicigenium vulgare (strain WSH-001) GN=rpoD PE=3 SV=1
------------------DSDISFDMSQAAVKRMIADARERGYITYDQLNSVLPPDQ--SDQIEDVMSMLSEMGIQVTDEEETEEVA--D-GTS------
-VGARELTL---------A--GPEVEKTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFNAITIWRDELMDEAVLLRDVID
LFGNQMGEDDDAPVVDA------------AGRDD---DDEDDDQNSMSLAMEATLRPRVLEALDTIAEQAMALEELQEAR----------MGAEEGQYQV
LRQKIVEVVNSLHLHSNRIDALIDQLYGINRRIMSIDSSMVKLADQARINRKEFIDEYRGSELDPSWLERMGQKPGRGWAMLIERSREKVEELRAEMAQV
GQYVGVDINEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A059IR62|A0A059IR62_9RHOB RNA polymerase sigma factor RpoD OS=Defluviimonas sp. 20V17 GN=rpoD PE=3 SV=1
------------------DSDVTLDMSQAQVKRMIADARERGYITYDQLNQVLPPEQ--SEQIEDVMSMLSEMGINVIENEEAEDDEEQ---SK------
-STSREVAV---------A--TSSSETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFHAITIWRDELLNEDILLRDVID
LFGRSMDDDVDDDVPAV------------DGSDDD--EDE-DDQSNMSLAMEAALKPRVLETLEQIAHDYTALSEMQDQR----------MDNAEQAYQT
LRSEIVLLVNELHLHNNRIEALIDQLYGINRKIMSIDSNMVKLADQARINRREFIDEYRGYELDPAWLDRMAEKDGRGWNALIDRSRDKVENLRAEMAQV
GQYVGVDISEFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|G0EUZ1|G0EUZ1_CUPNN RNA polymerase sigma factor RpoD OS=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) GN=rpoD1 PE=3 SV=1
-----------------PDPSTEAAARSQQLRALIQLGRQRGYLTHADISDHLPENFTDTAAMESIVSTFAEMGVKIYEQTPDAETLLSDGPV--VASDD
QADEEAEVA---------L--ATVDSEFGRTTDPVRMYMREMSSATLLTRKQEVEIAKRIEEGLNNMVHAISACPFTIAAILELSAKVASNEISIDDLVD
GLSDESIAEAAVAAAADE---T-------DDEDDSEDSDDEGSTQQSNEKALAQLREECLKRFARVTAQFELMCQESAA-----------NGAGSAAFLA
ARDAVREELRTIRFTAKTIERLCANVQAMVDEVRTVERQVVQLVERCGMEREEVIARFPGNETNLAWGQELVA-QSRPYSAAVARALPDLEAHQQKLIDI
QARAALSLPDLKGVNRKMLAAERQMRQAKHEMTQANLRLVISIAKKYTNRGMLFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRAIADQA
RTIRVPVHMIEQINKLNRLSREIMQQTGKEPDPAVLAERLEMTEDKVRSIMKIAKEPVSMETPVGEDGDTSLGDMIADSDTATPADAALQAGLRAVVREM
LDELTPREAKVLRMRFGIDMSTDYTLEEVGKQFDVTRERIRQIESKAMKKLRHPSRADQLITYLR-
>tr|A0A0F6YJT8|A0A0F6YJT8_9DELT RNA polymerase sigma factor RpoD OS=Sandaracinus amylolyticus GN=rpoD PE=3 SV=1
-----------------SGGRRLLGRERKEVQALLDKGRSKGFLTYDEVNEALPPEM--SEQIDDLMMLLGDESIDVVDSANEGKATAKARRERPDASDD
DRQATSAAP---------P--SVDDAMNTKSNDPVRMYLRKMGSVSLLTREGEVEIARRIEEGENKVFEVILSSKVGLGEVIELGEKLKKGKIRVREICK
EEETTEEGQEVDEEEW---------------------------------NRVVRLIDKVKRLEGQHQKIKEELEAAK-KV-----------SDAEQQMDK
IRRERFDTLRELRLNRKQIDRLVNTIKGFVRRVERAETQINEAERRAGGTEKAIRQALREMQDNA-AAKRLSKKIG-AEPDQLKEILEEIAEARRGIKKV
EEELGLPVDNLRATYRELHEGERDAEKAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMEMPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVVSPIEAVINMNLEEQTRRV
LKTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKQLRSFIE-
>tr|T0R2J1|T0R2J1_9DELT RNA polymerase sigma factor RpoD OS=Bacteriovorax sp. Seq25_V GN=rpoD PE=3 SV=1
------------------MSSAMTFLKSRDFLKLLEKGRDNSYLTPEEINDAIPASI--PELVDEIMLALQEAQVDVQEDVF-EEEDGIK----------
-EVIEETLS---------K--EERAELKSASTDPVKLYLKRMGSVALLTREGEVVIAKEIEDGEREIILSSLKSAHALEEIVKLKEKIESHTEFVRDLVR
GLDEESSQKEVDKV-----------------------------------DQIFAICDRVQKLLSEI-------I-----D-----------EDLTAEQSK
NMNDLSEQLADLTFNRKIINSFVEPVKRYYLQFKDLYEQQDRIFKFLEVDYEQYKLLYDKIMEDDAFKRSLAKDLF-TTDAKIEQLVRNQEDILRKLRRI
SIEAGMSFEDIETVYKIILKGEEKADRAKAQLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKMVRTQRQLIQELGREPTPEEIAEKMEMPVDKVKKVQKISKEPISLETPIGEEEDSSLGDFIEDKKIISPADAVMSITLSEQTRAV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFFVTRERIRQIEAKALRKLRHPSRAKMLKSYLD-
>tr|E1X3Y1|E1X3Y1_HALMS RNA polymerase sigma factor RpoD OS=Halobacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) GN=rpoD PE=3 SV=1
------------------MSIVTVFINSKDFSKLLIKGKDQSFLTAEEINDAIPASI--PEAIDEIMLKIQEMRIDIQDETS-EEEDGIR----------
-EIIEETLS---------K--EERAELKSASTDPVKLYLKRMGSVALLTREGEVVIAKEIEEGEREIILSAVKSTHAIKEIIKLKEKVETQNEFVKELVR
GLDDESSNADIAKV-----------------------------------DEIYSVCDNLETLLNRV-------E-----N-----------EDYTQEEKK
KMDTIALRLADLTFNRKIINSFVEPVKKYYLQFRELYEQQERIFKFLEVGQDDYKVLYEKVLEDDAFKRRLAKDLY-TTDAKIEQLIRNQEDVIRKLRRL
SLDAGMEFTDIEDVYNIILKGETKADVAKSQLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKMVRTSRQLIQELGREPTPEEIAERMELPVDKVKKVQKISKEPISLETPIGEEEDSSLGDFIEDDKIISPADAVMSVTLSEQTRSV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFFVTRERIRQIEAKALRKLRHPSRAKMLKSYVD-
>tr|T0DED8|T0DED8_9DELT RNA polymerase sigma factor RpoD OS=Bacteriovorax sp. BAL6_X GN=rpoD PE=3 SV=1
------------------MSSAAQFLKSKGFEKLIARGKDQDSLTPEEINDAIPASL--PEELDLIMLAISESEIEVTEAEV-EEEDGIK----------
-EIIEETLS---------K--EERAELRSASTDPVKLYLKRMGSVALLTREGEVVIAKEIEEGEREIILSSLKSSHAIAEIITLKDRINEPTEFVRELVR
GLDDESTQKDVDKV-----------------------------------KTIIKVCDELKEIYDSA------LN-----E-----------DDFSKTEKT
KMDAIATELADLTFNRKIINSFVEPVKKYYLQFKDLYEQQDRIFKFLEVTIEAYRDLHEKIMEDDAFKRAFAKELY-TTDAKVEQLVRNQEDILRKLRRL
SQEAGMSFDDIETVYKIITNGEERADRAKAQLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKMVRTQRQLIQELGREPTPEEIAEKMEMPVDKVKKVQKISKEPISLETPIGEEEDSSLGDFIEDKKIISPADAVMSITLSEQTRSV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFFVTRERIRQIEAKALRKLRHPSRAKLLKSYIE-
>tr|A0A0J6YWN7|A0A0J6YWN7_9BACT RNA polymerase sigma factor SigA OS=Nitrospina sp. SCGC_AAA799_A02 GN=sigA PE=3 SV=1
------------------MSNLEKITEVREINQLISQGKQKGYLTYEEVNDVLPSDV--PEQIDDLMHLFGENEIHIVDSAKKGEKLANK------GSSS
T-------E---------A--SPSRTESISIDDPVRMYLREMGTISLLTREGEVEIAKKIEAGQNEVITAVANCTVTINEIVDLGDQTKKGTISVFDVVM
VGEPEEKKAELEKSET---------------------------------KKFLKNIRSLKQQGQKLQKLQKRLG--S-KL-----------TDLEKEEII
QKKALEESIRTINLDPDVMDGIIERIYEIAASIRVAGKLERNLEREWGMTLAEVKKQAGNWSRQ---SVKLPRGKT-VTHKQYDNQLKLVQPGRRKIKKI
EKETNTSKDHLLATVRSIARGRVKEKTAKRELAEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRVSRHLVQELGREPTPEEIAKKMILPIDKVRKVLKIAKEPISLETPIGEEENSHLGDFIEDKKILSPIDSVVKRNLKEQTLRV
LSTLASREERVLRKRFGIGLDSEHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRSKKLRSFVE-
>tr|T0ST94|T0ST94_9DELT RNA polymerase sigma factor RpoD OS=Bacteriovorax sp. BSW11_IV GN=rpoD PE=3 SV=1
------------------MSILSVFLNSKEFSRLLVKGKDQSYLTAEEINDCIPASI--FETLDEIMLKLQEARIDIQEDSAEEEEEGIR----------
-EVIEETLS---------K--EERAELRSASTDPVKLYLKRMGSVALLTREGEVVIAKEIEEGEREIILSCLKSTHALKEIAKLSERIDTQSEFVKELVR
GLDDESTQADIKKT-----------------------------------DEICAVCDKIDKLLKEC-------E-----Q-----------EDFNQKQQK
EMNDISQTLADLTFNRKIINSFVEPVKKYYLQFSELYEQQDRIFKFLEVDIEDYKKIYDKVMEDDSFKRRLAKDLF-TTDAKIEQLIRNQEDNLRKLRRL
SLDCGMSFEDIQDVYNIILKGEEKADRAKSQLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKMVRTQRQLIQELGREPTPEEIAEKMELPVDKVKKVQKISKEPISLETPIGEEEDSSLGDFIEDTKIISPADAVMSITLSEQTRKV
LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFFVTRERIRQIEAKALRKLRHPSRAKMLKAYQN-
>tr|A0LHK2|A0LHK2_SYNFM RNA polymerase sigma factor RpoD OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rpoD PE=3 SV=1
------------------RDPALSKPEMDDIKRLITVGKEKGYLTYDEVNEALPEDL--PEKLDDMMMIFDEMDIEIVDSEQQVQVVETSGADS------
-EE----DE---------L--QIEADVTSRVTDPVKMYLREMGQVSLLTREGEVEIAKRIEAGEREIFNAIMESSIGIKEIMNLKHKLEDDNARVSDVLR
EVDDEITV--EEE------------------------------------ERVVGILREVQSLDESNKILQTRLLSD--SL-----------TRLKSQVQQ
NKEQIVSLLKGLQLSKRHIDSIIDKLHLCLDVIERSEDELRNCLLLSGKPLQELKPLYETAIEDRGKARACADQVN-MEEKDFLELANKAIEAKQRIEE-
EIEAKMDSRSLRLILRRVEDGLIRAKLAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMEFPVEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKRVASPVDAVINLNLSEQTRKA
LATLTPREEKVLRMRFGIGEKADHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRRKELKSFIE-
>tr|M4V626|M4V626_9DELT RNA polymerase sigma factor RpoD OS=Bdellovibrio exovorus JSS GN=rpoD PE=3 SV=1
-----------------LSIAEQEALAKEEVQKLIKLQKEKGRVTIEEINESLPPEV--MGVLDAFMQSLEANGVVITEHTETTR--------S--VDKE
-------DD---------E--DVATGEDVKGSDPVRLYLRKMGSVSLLTRDGEVEIAKRIERGEREIVKSMLLSPLGTYEIINLGKRLDEGRIKVKSIFR
GLEDEDTQ--YDEKEYI--------------------------------EKIHQLMNIVTEYQTATEKYFIQLRDEG--L-----------NLVMEELKV
LNQQLMSNFESINFNRKTINRVVIKFKNLVSRMGTLRRRIKDGVEKTFSDVPSMVERLKLIESNEK-LAKMTRDTG-LSFGRFRSYVIQAQEAEVRLKRL
HEDTAMNFKWIQETYTAIWKGEREADLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLVRTQRLLIQELGREATPEEIADKMDMPVDKVRKVLKIAKEPISLETPVGEEEDSHLGDFIEDKKVINPAEAIVNLNLAEQTRRV
LSTLTPREEKVLRMRFGIGEESDHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRSNKLKTFVD-
>tr|K7YJV2|K7YJV2_BDEBC RNA polymerase sigma factor RpoD OS=Bdellovibrio bacteriovorus str. Tiberius GN=rpoD PE=3 SV=1
-----------------LSLQEQETLIKEEIQRFLKLAKEKGALTIEEINELLPPEI--PSVLDSFMQGLEAGGVVISDLSESSK--------E--VDSE
D------DD---------E--EKAESEDVKGNDPVRLYLRKMGSVSLLTREGEVEIARRIEKGEREIVRAILLSPLGTYEIIQLGKRLDEGRIKVKSIFR
GLEDEDTQ--YDEKEYI--------------------------------DKIHELIGRVTEYQKAAEKLFLTLRKEE--T-----------NTAMKELVV
MNDKLMANFESVNFNRKTINRVVIKFKNLVNRIGTLRRRIKDGVERTFSDVAAMAERMKLIDANEK-LTRMTRDTG-LNYQKFKSYVLQAQEAEKRISRL
DSETEMNHNWVKETYTAIWKGEREADAAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLVRTSRYLIQELGREPTPEEIADKMDMPVDKVRKVLKIAKEPISLETPVGEEEDSHLGDFIEDKKVINPAEAIVNLNLAEQTRRV
LSTLTPREEKVLRMRFGIGEESDHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRSNKLKAFVD-
>tr|H0PZ49|H0PZ49_9RHOO RNA polymerase sigma factor RpoD OS=Azoarcus sp. KH32C GN=rpoD PE=3 SV=1
-----------------PVGALDAEVRKTRLKTLISLGKERGYLTYAEISDHLPDDVADAEQIEGIIATFNNMGIRVFDEAPAAEDLMSDAVPS-TVDED
VAEEEAEQA---------L--SSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMVQAISACPTTITEMLEIVDKVAGDEMRVDELVD
GLIDPNAAAEEEAAALAE---V---------DD-DDESSDEEKEAAANAASLAQLKADALARFAVIRKFNESKLEALAK-----------NGSQDLSYLA
LQQQISDELLNIRFTAKAIERLCDTVRHMVEQVRSHERQILQCVDRAGMPRQHFIKVFPGREVDLNWLKDEIG-VGKSYAEGLMRVHPAVLEEQQKLIDL
QSRIGISLKELKDVNRQMSTGEAKMRRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPDPATLAEKMDMPEEKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDQATLAPADAAMYSSLREATGEV
LDSLTAREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLRSFLD-
>tr|A0A0C3J2W7|A0A0C3J2W7_9RHOO RNA polymerase sigma factor RpoD OS=Thauera sp. SWB20 GN=rpoD PE=3 SV=1
-----------------AATPLDAEVRRTRLKTLITLGKERGYLTYAEISDHLPDDVADAEQIEGIIATFNNMGIQVYDEAPAAEDLMSDSVAT-NVDED
VAEEEAEQA---------L--SSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVQAISACPTTIAEMLGIVDRIAADDAKIDELVD
GLIDPNAGSAEEAAAEEE---S---------EG-DDEEDSAESAERANAASLLQLKNDALARFDVIRGLYEKKMQALEK-----------RGSQDLSYLA
LQQQISDELLNIRFTAKAIEKLCDSVRHMVEQVRSHERQILQCVDRAGMPRQHFIKVFPGQEVNLDWLKDEIA-AGKNYADGLMRIHPAVLEEQQKLIDL
QDRIGIPLKELKDINRQMSTGEAKMRRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPDPATLAEKMEMPEEKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDTATLAPAEAAMYSGLRDATCEV
LDSLTQREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLD-
>tr|S9ZQ13|S9ZQ13_9RHOO RNA polymerase sigma factor RpoD OS=Thauera terpenica 58Eu GN=rpoD PE=3 SV=1
-----------------VAAPLDAEVRRTRLKTLITLGKERGYLTYAEISDHLPDDVADAEQIEGIIATFNNMGIQVYDAAPAAEDIMSDNVAS-NVDED
VAEEEAEQA---------L--SSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVQAISACPTTIAEILGIVDRIAADEAKIEDLID
GLICPETGNEEVPGENIT---E---------SD-IEEETDEEIAARVNAASLLQLKNDALARFAVIRDLYAQKIDVLEK-----------RGSQDTHYLL
LQQQISDELLNIRFTAKSIERLCDSVRQMVEQVRGHERQILRCVDRSGMPRAHFIKNFPTRETDLNWLKKEIA-AGKSYAENLSRAHPAVLEEQQKLIDL
QEHLGIPLKELKDINRQMSTGEAKMRRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGSEPDPATLAEKMEMPEEKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDTATLAPAEAAMYSGLRDATGEV
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLD-
>tr|K0DSF0|K0DSF0_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia phenoliruptrix BR3459a GN=rpoD PE=3 SV=1
-----------------ELPPQQAEERQRQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAETLLNSNAPA-VVSDD
QADEETEVA---------L--STVDSEFGRTTDPVRMYMREMGATELLTRAGEIAIAKRIEDGLHEMVQAIAGCPLAISAILASAQQVADGELRIDELVD
GLNEDNVAAEEENVSAEA-------------DSDGDDDVGPADSSAADEARLKQLTSDCLEIFAQVGILYDQMNASHTR-----------GDVSSKAYQK
AREEIQQHLAKIRFTARTIDRLCGDVQHQVAQVRAIERNILQVVTKSGMPREKFIESFSGHEADLGWTERAAR-GNTSYGAALERHLPAIQSEQQKLIDI
EATVSLPLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQA
RTIRVPVHMIETINKLNRISREILQQTGQEAHPSVLAERMDLSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRAAIDDA
LDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPSRADRLKSFLD-
>tr|U3QG97|U3QG97_RALPI RNA polymerase sigma factor RpoD OS=Ralstonia pickettii DTP0602 GN=rpoD PE=3 SV=1
-----------------VSAHEMSENLRTNLLALIALGKERGFLTRGELSDQLPDCD--SGAIDRTLAMLADLGIEVVDRAPAEAPALTQDAAPS-ANEE
DVAEEAAAA---------I--TQSDGRLTRTTDPTQMYLREIGAIPLLTREEEVAIARRIKDALAEMMAAMVACPVVVSELLAMADRVACNEMAFDDLVD
HIVEPQAEAGGSLLPE---------------AGLDDGDPVPT--TSS--------ESESLRWRGIAFERFAAIRRQADAF----------AVADPIQYVR
GLATLQSELAAFRFSPPAIAELTQILEALIGEVRQTEHHVAELIDQCGITREVFLEGFRDQAANLDWMKALAAEHP-AIRAHLIRWTPEVRALQQQLRAL
EARAAMPLGDLRETAKRVAKAKTKALQARSEMIGANLRLVVSIAKKYQNRGLPLPDLIQEGNIGLMRAVDKFDYRRGYKFSTYATWWVRQAVIRAIADKA
PSIRIPMHLVEAIGKINRHSREIFRDTGAMPTPSMLAARLAMSEKQIKSILNVVKQPISLETPLGESGDALLGDTLADEGAISPVDAAAQVALQQEMEAA
LARLTPREAKILRMRFGVGLQTDYTLDEIGAQFGLTRERIRQLESQALRKLRKPEMTARLDGFVE-
>tr|H1SGE3|H1SGE3_9BURK RNA polymerase sigma factor RpoD OS=Cupriavidus basilensis OR16 GN=rpoD PE=3 SV=1
----------------------MNDNQQTNLLTLIALGKERGFLTHGEISDHLPDGK--AGIADGILAMLVELGIEVVDRAPADTML-SEDAPAA-SADE
VTVEEATAA---------I--TQSDSRFGRTTDPVQMYLREIGAVQLLTRDNEVEIATRHEEAIMEMVDAMARCPTVVSELLAMAEQVARDELTIDDLVA
HVVDAQAVPTDNSGMD---------------AEPDDCAQSPD--TASPAKSSAALKRDVLEWFAIVRARYLELTGSEEP--------------GTLRGER
ALAAIRCVLAKLRLSPIAIERLIRVLTVHLEDVRQTERRLAGLIDQCGMTRDEFVRRFKGR-EKFDWPAALGEDCP-TINGLLPRQILEIRALRQQLLAI
ESRAAIPLEDLREVGRLVTSAQVKAGQARAEMIEANLRLVVSIAKKYVNRGLPLLDLIQEGNIGLMRAVDKFDYRRGYRFSTYATWWIRQAMTRSIADKA
PTIRIPIHLVEVVGKINRASRECFRETGAMPTPDVLAAKMGMSEKKIKSILNVVKQPVSLDMPVGESGDALLGDTLADEITASPLDAAVQAGLKRDLEAV
LATLSVREAKILRMRFGIDTATEYTLDEIGRQFGVTRERIRQLETQAMRKLRKSEGAIRLHAYRD-
>tr|Q1LEA3|Q1LEA3_CUPMC RNA polymerase sigma factor RpoD OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=rpoD2 PE=3
----------------------MNNTHPESLVALVALGSERGFLTHGEISDALPDSD------GQIQRVLEELGVQIVERTLANEPILEEHADAL-VVDE
AVIEEAAAA---------V--MQADGREARTTDPVQLYLREIGTIPLLTREDEVAIARRHEIAVTEMVAEMVSCPLVVYELLTMADEIERGEMAVDDLID
HWDEVPAAAVNVPAIEM--------------VDLEETDPVST--GASTARSSAALESEVIARLAIVRARFLDWSRQSRQQ----------A--ATSDAFV
ALNAIRAELAVYHFSAAAVARLGQVLSTHIAAIQQAERRIAGVIDRCGIAREQFLQTFPGHEIDLGWSEALAAERISGAADALVRAIPEIQAIQREMRVL
ENRAAMSLGDLKNLGQRVAKARARAQAARDEMIRSNLRLVVSNAKKYLHRGMPLLDLIQEGNLGLMRAVDRFDYRRGYKFSTYATWWIRQGITRAIADKG
PTIRIPIHLVEVVGKVNRASRELFHETGEAPAPEALAARLSLSVKKVKAILDLVKEPLSLEMSVGESGDALLWDTLTDECSASPDESAMRVSLRKDLDEA
LATLKPREAKIVKMRYGVDAGTDYTLEEIGQQYGLSRERVRQLERQALRKLRNPDRAPRLQAHRD-
>tr|A3U217|A3U217_OCEBH RNA polymerase sigma factor RpoD OS=Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597) GN=rpoD PE=3 SV=1
------------------EQDVSLDLSQAQIKKMIAEARERGFITYDQLNQVLPQDQ--SEQIEDVMSMLSEMGINIIEDEEAEEEEK-----S------
-TSNREVAL---------G--SGSQEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LFGDQME--GDEDAPVV------------DPKDE---DEDEDEQANMSLAMETALKPRVLETLDTIARDFAVLSEIQDNR----------IDDDEAEYQK
LRAEIVELVNGLHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRREFIEEYRGHELDPNWMERMSEKSGRGWQMFIDRFSDKVEDLRSDMAQV
GQYVGLDISEFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|I1B2X7|I1B2X7_9RHOB RNA polymerase sigma factor RpoD OS=Citreicella sp. 357 GN=rpoD PE=3 SV=1
------------------EDAHSLDMSQAAVKKMIAEARERGYITYDQLNQVLPPDQ--SDQIEDVMSMLSEMGIQVTEEDEEADEDNSPSKGS------
-RGK-DVAL---------S--SGGAEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWREELLSEDVLLRDVID
LFGNQLDEEGGLEEPVI------------DADNDD--DEDDDEQANMSLAMETALKPRVLETLDRIAQDYETLAAMQDAR----------IDNDEATYQK
LRSEIVELVNGLHLHNNRIEALIDQLYGINKRIMSIDSAMVKLADQARINRREFVEEYRNHELDPSWLERMSEKPGRGWQMFIERFSDKIEGLRTDMAQV
GQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|K2JH47|K2JH47_9RHOB RNA polymerase sigma factor RpoD OS=Celeribacter baekdonensis B30 GN=rpoD PE=3 SV=1
------------------DQDGMLDVSQTSVKKMISEAREKGYITYDQLNKVLPPEQ--SEQIEDVMSMLSEMGINIIEDEEVEDEDGDAKGGA------
-TGSRDVAM---------A--ASETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWHDELLSEDILLRDVID
LFGTGVDGDD--EESVV------------GGTDDD-DDEDDDEQANMSLAMEAALKPQVLETLARISEDFANLSEMQDQR----------MDNEEAIYQK
LRSEIVVLVNSLHLHNNRIEALIDQLYGINKRVMSIDSNMVKLADQARINRKEFIDEYRGYELDPSWLDRMAEKGGRGWQMFVERHTPKVEELRSEMAMV
GQYVGVDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDAAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|L1K7A4|L1K7A4_9RHOB RNA polymerase sigma factor RpoD OS=Rhodobacter sp. AKP1 GN=rpoD PE=3 SV=1
------------------DAETSLDMSQAAVKRMIAEARERGYITYDQLNTVLPQDQ--SEQIEDVMAMLSEMGINVIENEEAEEGE-----PA------
-SGSREIAV---------A--GTQGETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LFGRSLDGDGDDEIDGPE---I-------DERAEE--EDEDDEASAMSLAMEAALKPRVLETLELIARDYGKLAEMQNRR----------MHIDEAAYQK
LRSEIVLLVNELHLHNNRIEALIDQLYGINRKIMSINSAMVKLADAARINRREFIDEYQGYELDPMWAERMAAKSGRGWQTLMEKSRDRVEDLRGEMAQV
GQYVGVDISEFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0R2WMF2|A0A0R2WMF2_9RHOB RNA polymerase subunit sigma OS=Rhodobacter sp. BACL10 MAG-120419-bin15 GN=ABR97_00365 PE=4 SV=1
------------------DSETSIDMSQAAVKRMIADARERGYITYDQLNAVLPPEQ--SEQIEDVMSMLSEMGINVIENEDGEDGE-----SV------
-SSSREVAV---------S--SGSSEVLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWREELLNEDILLRDVID
LFGRSGEGDDDLEEAGL--------------NNDD--DEDDDEDNAMSLAMEAALKPRVLETLEVIARNYANLADMQDLR----------MTADETEYQT
LRSEIVLLVNGLHLHNNRIEALIDQLYGINRKIMSINSAMVKLADAARINRREFIDEYQGYELDPLWADRMATKPGRGWQALMEKSRDKVDELRTEMSSV
GQYVGVDISEFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A086Y765|A0A086Y765_9RHOB RNA polymerase sigma factor RpoD OS=Paenirhodobacter enshiensis GN=rpoD PE=3 SV=1
-----------------VDEDTSFDMSKAAVKRMIAEAKERGFITYDQLNAVMPPDQ--GDQIEDVMSMLSEMGINVVEAEETEEPEPV-----------
-NGSHALAV---------A--SSTNETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLNEDILLRDVID
LFGRSLEGEDDLE--GPV---E-------GMTE-E--EDEDDEGSNMSLAMETALKPKVLETLEAIAGDYARLAEMQDLR----------MDGEEAAYQK
LRSEMVALVNELHLHNNRIEALVDQLYGINKRIMSIDSAMVKLADTAKVARREFIEEYRNYELDPTWAERMKAKGGRAWATLFEKSGDKVDELRAEMAQV
GQYVGVDISEFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|K8R8Z8|K8R8Z8_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia sp. SJ98 GN=rpoD PE=3 SV=1
-----------------AMTAEQNEERQRQMRALIQLGKERGYLTHAEINDHLPDNFAETAAMETVVSTFHDMGVAVYEQAPDAETLLSDNAPS-AVTDE
QSDEEAENA---------L--STVDSEFGRTTDPVRMYMREMGATELLTRAGEIAIAKRIEDGLHEMIQAIAACPSTVATILADAAQVESGELKIDELVD
GLKEEDTADEDMSASDTT---D-------SA-DDDDDLDGAGDSAASNEARLKQLKADCLEIFARVRELAEQASSPKGS-----------GAAAAKAVEK
ARAEIQRELGSIRFTAKTIDRLCANVQQQVAQVRDIERRVLQAVDRCGMPRDKFVESFVGHETDLEWTARASA-ASKQYGASLERSLPAIQAEQQKLIDI
EGVVEMPLQQLKKINRQMTAAELKMRQAKREMIEANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQA
RTIRVPVHMIETINKLNRISREILQQTGLEAHPSVLAERMEMPEEKIRGILKIAKQPVSLETPVGEDADATLGDMIEDQGAASPAEAAVHANMRAAIDDA
LNALSPREAKVLRMRFGIDTASDYTLEELGKQFDVTRERIRQIESKAMRKLMHPSRADKLRPFLD-
>tr|D5WNE0|D5WNE0_BURSC RNA polymerase sigma factor RpoD OS=Burkholderia sp. (strain CCGE1002) GN=rpoD PE=3 SV=1
-----------------VS---PDEEQQRQMRALIQLGKERGYLTHAEINDHLPDNF--TAAIETIVSTFNDMGVAVYEQAPSAEVLMNDATPAT-MLDD
QADEEAEVA---------L--SSVDSEFGRTTDPFRMYMREMGATGLLTRAGEIEIAKRIEGGLHEMVQAIAVSPATVSAILLSAKQIEAGELRIDELVD
GINAETESVEQSSTDFA--------------GGDEHSEIEDRDTARSNEARLKQLTSDSLVIFARVRELFEQISGSQAAQ-----------GK--VARAD
LREAIQRELAPIRFTARTIDRLCNAVQQQVAQVRAVERHILQAVDRCGMPREKFVESFQGRETDLAWSESTAAASR-EYGAALERSLPAIQAEQRKLLDI
ETKVGLPLQQLKKINRQMMAAESKMLQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQA
RTIRIPVHMMESINKLNRISREILQQTGREAHPAVLAQRMEVPEEKVRAMLKIGRQPLSLETPVGDEADTTLSDVIEDPMATSPADAAVQANLRAAINTA
LDALSPREAKVLRMRFGIDTASDCTLEELGKQFDLTRERIRQIESKAMRKLMHPNRTAKLRPFLD-
>tr|F0EYZ6|F0EYZ6_9NEIS RNA polymerase sigma factor RpoD OS=Kingella denitrificans ATCC 33394 GN=rpoD PE=3 SV=1
-----------------DNRPLSPEEQRERLRRLILQGKERGYITYAEINDALPDDMSDAEHIDGVVNMIQGLGIQVTEEAPDADTLMSDNSSA-MTDED
A-VAEAEAA---------L--SQADSEFGRTTDPVRMYMREMGQVELLTREDEIKIAKEIENALKNMIQAISACPGSVGEILALIDQVKKDEIRVDEVVE
AIIDPNEVLLNELGLGHL---E-------NNEDGGEDDEDADSGSLESQQNLEELKAQVLEHFKHIEKSYGLMVKALDK-----------HHSKHDTYLK
HRNNIAQKLLEVRFSTRQIENLSENLRGRVEQIRRLEREIRDCLDRVRMDRDYFIEHFMPNATNLAWLEEEIG-KNRVWSETLARFKHDILEKQAKMAEL
EAHARISIAELKEISKNMVKSEKETAAAKQKMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMDMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDVNNVAPAEAAMYSSLREVTADV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLKSFLD-
>tr|V9HDP3|V9HDP3_9NEIS RNA polymerase sigma factor RpoD OS=Simonsiella muelleri ATCC 29453 GN=rpoD PE=3 SV=1
-----------------DNRPLTPEEQRARLRQLIIFGKERGYITYAEINDTLPDDMSDAEQIDNIVNMIQGLGIQVTEEAPDAETLMSDNSAA-VADED
A-VAEAEAA---------L--SQADSEFGRTTDPVRMYMREMGQVELLTRADEIIIAKKIENALKNMIQAISACPGSVGEILALIDQIKKDEIRVDEVVE
AIIDPNEVLLNELGLSHL---E-------NGADDDEEDEEDASGSNLEGQNLEELKAQVIEHFKQIGKSYGLMIKALEK-----------YDSKHTKYLE
HRDAIASKLLEVRFSTRQIEKLSESLRGRVDLIRKLEREIRDCLDRVRMDKDYFISSFLPNATNLNWIEDEIN-KNRVWSETLQRFKHDILEKQTEMSNL
EAHARISIEELKEISKNMVVSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDEDSHLGDFIEDANNVAPSDAAMYSSLREVTKDV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLKSFLD-
>tr|H8DYU1|H8DYU1_9NEIS RNA polymerase sigma factor RpoD OS=Kingella kingae PYKK081 GN=rpoD PE=3 SV=1
-----------------DSRPLTPEEQRERLRRLIMLGKERGYITYAEINDSLPDDMSDAEQIDGIVNMIQSLGIQVTEEAPDADALMNDNSTG-ITDDD
A-VAEAEAA---------L--SQADSEFGRTTDPVRMYMREMGQVELLTREDEIKIAKEIENALKNMIQAISACPGSVGEILELIEQIKKDEIRVDEVVE
AIIDPNEVLLNELGLGHL---E-------SSSDEDDDSDSGDAGGMDNQQNLEELKAEVLEHFKQIEKSYGLMIRALDK-----------NDSKHAKYLE
HRNNIAQKLLEVRFSTRQIEKLSDNLRSRVEQIRKLEREIRDCLDRVRMDREYFIEQFMPNATYLEWIDEEVA-KNRVWSEALGRFKHAILEKQTEMAAL
EAHARISIAELKDISKNMVKSEKETAAAKQKMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEEPDSAKLAELMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDVNNVAPADAAMYSSLREVTSDI
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLKSFLD-
>tr|C4GJP4|C4GJP4_9NEIS RNA polymerase sigma factor RpoD OS=Kingella oralis ATCC 51147 GN=rpoD PE=3 SV=1
-----------------DNRPLTPEEQRERLRRLIIQGKERGYITYAEINDALPDDMSDAEQIDNIVNMIQGLGIQVTEEAPDADSLMNDNSTA-ITDED
A-VAEAEAA---------L--SQADSEFGRTTDPVRMYMREMGQVDLLTREDEIKIAKEIENALKNMIQAISACPGSIGEILDLINQIKKDEIKVDEVVE
AIIDPNEVLLNELGLGHL---E-------SSDESGDDDDSEGDSAAIESQNLEELKAQVLDHFKQIEKSYNLMIRALDK-----------SGSSSAKYLE
HRGNIANKLLEVRFSTRQIEKLSDSLRSRVEKIRKLEREIRDCLDRVNMDRDHFIAHFLPNATNLDWIEEEIA-KKRAWSETLDRFRHAILEKQTEMAEL
EQHARVSIAELKDISKNMVKSEKETAAAKQKMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQYLQETGEDPDSAKLAELMEMPEDKIRKIMKIAKEPISMESPIGDDDDSHLGDFIEDVNNVAPAEAAMYSSLREVTAGV
LESLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLKSFLD-
>tr|G4E410|G4E410_9GAMM RNA polymerase sigma factor RpoD OS=Thiorhodospira sibirica ATCC 700588 GN=rpoD PE=3 SV=1
-----------------KRVFMDQEEQQSRLKELIAKGKEQGFLTYAEVNDHLPDTI--PEQIEDIIFMINNMGIAVHEQAPDADTLLSDTGVTA---DD
A-AEEAAAA---------L--ASVDGEFGRTTDPVRMYMREMGTVELLTRDGEIQIAKRIEEGLAQVLFALAHYPQSIASLLAEYEKVQSEEIKLSDVLV
GFMDITTGDVVNSSA---------------PDEEVASAEDDLVDAGPD-------PEEAQERFSKLREMYERAVGFAEK-----------K--QKEKYRQ
AREELAHYFMEMKLVPRLVDQLTIDLHGVVERIRSHERAVMDCINRCKMPRKDFIHSFPENETNLKWLDGLVKE-KP-YAAALQQNKDEILRIQKQLVAI
EEETGLSISEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELSRRMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNVMSPIESATRESLSETTRDV
LSSLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEMLRSFLD-
>tr|A0A0B0H990|A0A0B0H990_SOVGS RNA polymerase sigma factor RpoD OS=Solemya velum gill symbiont GN=rpoD PE=3 SV=1
------------------MSQMNQAQQVSQIKLLIDKAREQGYLTYAEVNDHLPDTI--PEQIEDIIRMINDMGINVYETAPDLDETMDEA----A-PDD
DAAEAAAAA---------L--ASVDTDFGRTTDPVRMYMREMGTVELLTREDELRIAKRIEDGLRQVSTAASMYPPVIEDLLERFEIAQSEEGKLTDVIS
GFIDFDDVTPATP-VSKA---D-------QE---SSDDDDTPADTGPD-------PEETKRRVTGLKRNYNALRKAMDAG----------D---AAKAQK
SQEKVTEFFTEFKLIPAVFIAITMRVKSAVNNIRTYEREIMACID-AGMERKQFITSFPENETNSDWIKIQAKAKG-APKAALLEIADEVQKIQNRLLIV
TEHASLGITQLKELNRMMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQIVQEQGRDATPEELAVKMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNAVTPIDSATIEGLREATQNM
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLD-
>tr|A0A094MZS3|A0A094MZS3_9GAMM RNA polymerase sigma factor RpoD OS=Thiobacillus prosperus GN=rpoD PE=3 SV=1
-----------------MFHSMQHEEQQSRLKELIAKGKEQGFLTYAEVNDHLPDSI--PEQIEDIIGMINDMGITVHEVAPDSDSLLSDSDVAA---ED
V-AEEAVAA---------L--TSVDSEFGRTTDPVRMYMREMGTVELLTREGEIKIAKRIEDGLSQVLFALAHYPQAISGLLAEYDRIEAGDAKLTDVVQ
SFLDRDAMENEVIPT---------------PSDDDDDDDEEPADTGPD-------PVEARERFTKLRELYTKAMKAQSK-----------N--QKEKYDE
LRKEIATYFMEFKLTQRVIDDLINQLRTTIELIREQERRIMDCIRRAHMPRRAFIDSFPGNETRIEWLAERLEAPNQKYAEALTEVADEVRHAQKKLKAI
ETNASLQIGEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGNVMSPIDTATRDSLSETTREV
LGSLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSELLRSFLD-
>tr|B8GPV7|B8GPV7_THISH RNA polymerase sigma factor RpoD OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=rpoD PE=3 SV=1
---------------------MDHAEQQSRLKELIAKGKEQGFLTYAEVNDHLPDTI--PEQIEDIIAMINDMGIAVHEQAPDSDSLLSDSTVST---ED
A-AEEAAAA---------L--ASVDSEFGRTTDPVRMYMREMGTVELLTREGEIKIAKRIEDGLGQVLFALAHYPQSISTLLAEFDKVEAGEMKLTDLVV
SFIDPNADDVPAVAA---------------NDEDDDDTASEPEDTGPD-------PEEARERFTKLRAMYEEAMGFAAK-----------K--HTAKYRK
VREEMASYFMEFKLLPRFVDQLTADLHEMVERIRMQERTVMDCVNRCNMPRKEFITAFPENETNLKWLDTQTKG-KK-HAKLLAEHKDEILRIQKKLVAI
EDESNLTISEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELSERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNVMSPIEAATREGLSEATRDV
LASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEMLRSFLD-
>tr|H1G6C6|H1G6C6_9GAMM RNA polymerase sigma factor RpoD OS=Ectothiorhodospira sp. PHS-1 GN=rpoD PE=3 SV=1
---------------------MNHEEQQSRLKELIAKGKEQGFLTYAEVNDHLPDTI--PEQIEDIIAMINDMGITVHEQAPDSDSLLSDSSVST---DD
A-AEEAAAA---------L--ASVDGEFGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEDGLSQVLFALAHYPKSIASLLAEWDQVEAGETKLTDVVV
SFIDPNADEIAAVSL---------------PDDDGDDEAAAPEDTGPD-------PEEARIRFTHLKAMYEKAIAHAGA-----------D--KREEYRQ
AREELARYFMEFKLVPRLVDQLTADLHEMVERIRNQERAIMRCVDTCQMPRKDFIRTFPENETNLEWLDGCLKG-KSKYKELLAEHRDDILRAQKRLVTI
EEESSLTIGEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELSQRMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNVQSPIESATRESLSETTREV
LASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEMLRSFLD-
>tr|I3BZ90|I3BZ90_9GAMM RNA polymerase sigma factor RpoD OS=Thiothrix nivea DSM 5205 GN=rpoD PE=3 SV=1
--------------------MSQEEQQQSSLKELIARGKEQGYLTYAEVNDHLPDTI--PEQIEDIVAMINDMGITVYEHAPDADSLLNDDAVQA---DE
A-AEEAAAA---------L--ANVDSDFGRTTDPVRMYMREMGTVELLTREGEIQIAIRIEEGLNEILRALAQYPASTEVLLEKSELIDSEEIRLTDIIN
GFVNPNEDLNVFAVAAPV---V-------DEDEDDDDEASDPVDTGPD-------PEEARIKFAELRDLYEASKVACDS-----------N--NESAYTA
ARDAVATKFMEFRLAQPIIDQLTIQLNEIVDRIRQNERHIMKCVQKGGMARQDFIDSFPQNETDLEWLNRYCADKRG-DTSKLLALLPKVREAQEQLLEI
ERECNLSIAQIKDINRSMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRKLLQEKGREATPEELAEAMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGNILSPIESATTSSLSEITREV
LSSLTSREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDMLRSFLE-
>tr|A0A0N0K354|A0A0N0K354_9PROT RNA polymerase sigma factor RpoD OS=alpha proteobacterium AAP81b GN=rpoD PE=3 SV=1
-----------------GADAPLLDLNEASIKKLIARAKKRGYITVDELNEALPPDQ--GDQIEDVMASLSEMGINLIENEEPAEDPEARAADE------
-NEMGVAAV---------V--AAPKAPLDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRNTMIAGLCESPMTFTAIIDWSEALNEGRMQLREILD
LLAKDPVEGEAEA----K---D-------DNRRTPRPTEEEEEDQTLSLAMEEQLKPAALETFAELTALYKRFLKLQEAR----------LGNDEKKYQK
LREELTRGVQSIHFHNNKIEVLVDQLYTQNRRLLALGGQIMRLADKHKINRKTFLDEYAGHELDEAWLTRVAGLD-KRWAAFAAVEAVAVDDMRREIAGI
AEATGVELNEFRRITNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQILHEIGREPTPEELAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIHANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|Q39N28|Q39N28_BURL3 RNA polymerase sigma factor RpoD OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 / 383) GN=rpoD PE=3 
-----------------ASLARQNEERQRQMRALIALGRERGYLTHADINDHLPDNFAQTAAMDTIVSTFSDMGVAVYEQAPDAEALLTEAAPA-VASDD
QADEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGASELLTRAGEIEVAKRIEDGLQDMIQAIAACPSIVSTILADVDRIVAGELRIDELVD
GISVDTDESEMTPES---------------QSDEDDVETDAGDSEKVNAARLEELTNDSLVIFARVRALFEQLPDVPVT-----------GEARSAAAAQ
VRAAIQRELAPIRFTAKTIDRLCEIVHGQVTEVRAIERSVLAAVDRCGMPRDAFVESFPGHETDLDWTSRTAA-TSQQFGAALERHQPAIQAAQQKLVDI
ESRVSLPLQQLKQINRQMSAAELKMRQAKREMIEANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRALADQA
RTIRVPVHMIETINKLNRISREILQQTGQEAHPAVLAKRMEMSEEKVRSILKIAKQPVSLETPVGDDADATLGDMIEDVSASSPAEAAIHANMRAAIDEA
LNGLSPREAKVLRMRFGLDTNSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPSRADKLRPFLE-
>tr|A0A063B5V4|A0A063B5V4_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia sp. lig30 GN=rpoD PE=3 SV=1
------------------------------MRALIALGRERGYLTHADINDHLPDNFTQTAAMETIVSTFGDMGVAVYEQAPDADTLLNDASQA-VASDD
QADEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGASELLTRAGEIEVAKRIEDGLQDMIQAIAACPSIVSTILADVDRIVAGELRIDELVD
GISDDANESDMSPAS---------------DSDEDDVETDAGDLEEANAARLEQLTNDSLAVFARVRALFERLPDGPVT-----------GQSRSAAVVQ
VRAEIQRELAPLRFTAKTIDRLCAIVREQVTEVRSIERSILQAVDRCGMPRETFVESFPGHETDLEWTSRMAA-TSQQFGAALERHLPAIQAGQQKLIDI
EARVALPLQQLKQINRQMSAAESKMRQAKREMIEANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVSRALADQA
RTIRVPVHMIEAINKLNRISREILQQTGKEAHPAVLAERMEMSEEKVRSILKIARQPVSLETPVGDDADATLGDMIEDAAASSPADAAIHANMRAAIDEA
LDALSPREAKVLRMRYGLDTTSEHTLEEVGKQFDVTRERIRQIEGKAMRKLMHPNCSDKLKPFLE-
>tr|Q46NC6|Q46NC6_CUPPJ RNA polymerase sigma factor RpoD OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpoD PE=3 SV=1
-----------------MAMARQDEERQRQMRALIALGRERGYLTHADINDHLPDNFTQTAAMETIVSTFSDMGVTVYEQAPDADTLLSDTAPA-GASDD
QADEEAEAA---------L--STVDSEFGRTTDPVRLYMREMGASELLTRAGEIEIAKRIEGGLQGMIQAIAACPSVVSTMLADVDRIVAGELRIDELVY
GISDDVNDSEIALAS---------------DPVGDDVEPDAGDSEKANAARLEQLTLDSLAIFARVRALFEQLPDAPVT-----------GKARSAAVEQ
LRSKIQSELAPIRFTAKTIDRLCASVHEQLTEVRAIERSILEAVDRCGMPRKVFVESFPGNETDLKWTSKMAA-TSRQFGAALKRHLPAIQAGQQKLIDI
EAKVTLPLQQFKQINRQMSAAELKMRQAKRELIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRALADQA
RTIRVPVHMVEMINKLNRISRDFRQQTGREAHPAVLAERMEMSEEKVRSILRSARQPVSLETPVGDDADATLGDMIEDVSASSPAEAAIHADMRAAIDEA
LDGLSPREAKVLRMRFGLDTTSDRTLEEVSKQFDVTRERIRQIESQAMRKLLHPSRADKLRPFLE-
>tr|G8ML68|G8ML68_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia sp. YI23 GN=rpoD PE=3 SV=1
-----------------SDRQQGTDEHEWAIRALIRIGKDQGFVTHAQINDHLPGDL--MTMVEDISRAFHEMGLAVYEHAPSTETLLDDAVSND-TLDD
QSGEDDEFA---------L--SAVDSEFGRTTDPVRMYMREMGAKQLLTRKAEVEIARRIEDSLNEMIQAIASCPPTISMILASAQLVAEGKLGIDEMID
GIDDESMPAAAEVDESA------------------NCQSDSEAEDNADQLRLTRLMTDGLALFGRVRECVDQLREAGET-----------------HAPN
ALETIRKELGRVRFTARIVGQACDDMQQRLARVRQIEQRISSAIDRCSMPREQFIALFPGHETDLDWTTKTAAKSL-DYGASLERSVAAVRAEQYQLMDI
ERHAAMPIQRLKQTSRHLLAAESRMRRAKDEMIEANLRLVISIAKKYVNRGVHFLDLIQEGNIGLMKAVDKFEYKRGWKFSTYATWWVRQAVTRAVADQA
RTVRIPVHMMEIINKLNRISNELRQHTGKPALPAALAERMELPEAQIRGIQKMAMHPISLQTPANDDADATLGDLIEDANVKSPLEVVVRTGMRVAIDDA
LNTLLPREARVLRMRFGINVPTEFTLGEVSSHLGVSRERVRQIESQAIRKLMHPSRADKLRSFID-
>tr|A0A0A6QF52|A0A0A6QF52_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia sacchari GN=rpoD PE=3 SV=1
-----------------MDGGSQLEKRQHQMRALIKLGRERGYLTHADINDHLPDNFAQTAALETIVATFNDMGVQVYEQAPDADTLLNEDTRADSQADD
EADEEVEVA---------L--STVDSEFGRTTDPVRMYMREMGSSELLTRAGEIEVAKRIEDGLQEMIQAIAACPSIVATILADSDRVAADEMRIDELVD
GIGSDEAAQEPAAADA-D------------ASDNEDGDDEDADNSKANEALLAQLKADSLVIFARVRALFEQMACTTDA-----------NARASAAEMQ
ICADIQRELAPIRFTARTIDRLCTLLHEQVAQIRAIERNVLAVVDRCGMPREAFIEQFPGHETDLEWGVRAAA-ASSKYGPAIERSLPAIQAEQRKLAEI
EAAASLSLQQIKGINRRMTAAEAKMRQAKGEMVKANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRALADQA
RTIRVPVHMIETINKLNRISREILQQTGMEAHPADLAARMGMTEEKVRGILKIAKQPVSLESPVGDDGDATLGDMIEDAGSASPADAAIHANMRAAIDEA
LKALSPREAKVLRMRYGIDTTSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPSRADKLRPFLE-
>tr|A0A022GSI7|A0A022GSI7_9BURK RNA polymerase sigma factor RpoD OS=Cupriavidus sp. SK-4 GN=rpoD PE=3 SV=1
-----------------ASMARQEEERQRQMRALIALGRERGYLTHADINDHLPDNFTQTAAMETIVGTFSDMGVAVYEQAPDAETLLNDAAAA-AASDD
QADEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGARELLTRAGEIEIAKRIEDGLQDMIQAIATCPSVVSTILVDADRIVAGELRIDELVA
GISDDVNESEMTLES---------------EPDRDDVEMDAGDPETTNAARLEQLTSDSLAVFARVRALFEQLPDVPVT-----------GKTRSAAVAQ
LRSAIQRELAPIRFTARTIDRLCASVRAQITEVRAIERGILEAVDRCGMPRDAFVESFPGHETELTWTSRMAA-TSRQFGTALERHLPAIQAGQQKLIEI
EARVSLPLQQLKQINRQMVAAELKMRQAKREMIEANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRALADQA
RTIRVPVHMIEMVNKLNRISREFLQQTGQEAHPAILAERMEMSEEKVRSILRIARQPVSLETPVGDDADATLGDMIEDVSASSPTEAAIHANMRTAIDEA
LDELSPREAKVLRMRFGLDTTSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPGRAGKLRPFLE-
>tr|I5CD63|I5CD63_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia terrae BS001 GN=rpoD PE=3 SV=1
-----------------ECPFQQAEHTQNQMLALIQLGKERGLLTHADINDHLPDGF--TDAIESIVHTFSDMGVAVYEKASDAQTLLNDTAPTV-ALDA
QADEESEVA---------L--SAIDSEFGRTTDPVSMYMREMGAIELLTRAGEIEIAKRIEDSLREMIQAIAACPATVSALLASAEQIAAGELRIDELVD
GLYEDTMQDDLPPSDSD--------------DSDEDGRLEAAGATPANEAQPKQLTSACLAIFTRVRELFEQLPRPYSTK-----------DI--AEFAR
VRGEIQRELASIRFTARTIDRLSTDVQQQVAQVRAIERRILQAVVRCGMPRETFVESFPAHETDLGWTAWTAATSS-AFGAALEGSLPEVQAEQQKLINI
EAKLALPLQQLKQVNRQMTVAEAKMLQAKREMIEANLRLVISIARKYVNRGVQLLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVKQAVTRALADQG
RTIRVPVHTSATVKKLNRIAHEILQQTGQEAHLKMISVRMGMPEKKVLGIMKIVKEPLSLETPVGEDADATLGEIIEDSSATSPADAAEHADMRAAVQEA
LDSLSPREAKVLRMRFGIDTTSAHTLEEIGKKFDVSRERIRQIESEAMRTLTHPSRSNKLRSLLN-
>tr|W6WEM1|W6WEM1_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia sp. BT03 GN=rpoD PE=3 SV=1
-----------------ALLESLVEERQRQMRALIALGRERGYLTHADINDHLPDNFTETAAMETIVSTFGEMGVSVYETAPDAETLLNDGPSA-AASDD
QADEEAEVA---------L--STVDSEFGRTTDPVRMYMREMGASELLTRAGEIEIAKRIEGGLQDMVQAIAMCPSIISTILADVDRVVAGEIRIDELVD
GISDTSEAAELDEEAA-D---A-------AASDEDDGDLSDDGGEKANAARLEQLTVDSLAIFGRVRDLFASVPDMPVT-----------DKRRATAIAN
LRESIQQELTPIRFTAKTIDRLCAEVQAQVAQVRAIERHILQAVDRCDMPREAFVESFPGNETDLDWTMRIAA-KSKSYGPALERHLPAIQSEQQKLVDI
EASIALPLQQLKQINKQLGSAEGKMRQAKREMIEANLRLVISIAKKYVNRGMHFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAITRAIADQA
RTIRVPVHMIESINKLNRIQREIVQQTGQEPHPSVLAERMDMPEAKIRSILKIAKNPASLDSPVGEDADTTLGDMIEDTSATSPADAAVHANMRRAIDEA
LDALTPREAKVLRMRYGIDTASELTLEEVGRQFDVTRERIRQIEGKAIRKLNHPSRADKLRPFLE-
>tr|H0HPM3|H0HPM3_9RHIZ RNA polymerase sigma factor RpoD OS=Mesorhizobium alhagi CCNWXJ12-2 GN=rpoD PE=3 SV=1
-----------------ATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEE--SEQIEDTMSMLSDMGINVVEDDETGEEAGEPT-------AA
DQTGTAVAA---------T--TTKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEAKILLREIID
LYAGPEAKQAPTPERQE--------------RGLAEDEDEDEDEASLSLAMEAELRPQVMETLDVIADTYKKLRKLQDQQ----------VAGQDRRLKE
LKDQLITAVKSLSLNNARIESLVEQLYDINKRLVQNEGKLLRLAESYGVRRESFLQEYQGSELDPNWIKSISNLSARGWKEFTRNEKDAIRDLRSEIQNL
ATETAISIAEFRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAILPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0B2BWI6|A0A0B2BWI6_9SPHN RNA polymerase sigma factor RpoD OS=Porphyrobacter mercurialis GN=rpoD PE=3 SV=1
-----------------AEDAPLIDLNEASIKKLIAKAKRRGYITVDELNEALPEDQ--TDQIEDVMSAISEMGVNIVENDEDAAEEEEGERRA------
-EAASANVP---------E--KKRKETTERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMIMGLCESPITFHAIIQWSEALNNGEMQLREILD
LLSKEPPVEKMEA---DE---D-------DDGTSRRREEEEEEDNTLSLQMEAALKPDALERFARITDLFNAFEKLQAER----------VGNKERRYEE
LREQLTAEVESVQFHATKIEYLVDNLYAFNRRLTMLGGQMLRLAERHKVKRVDFLNAYLGNELDDAWLGSMVKKD-KKWTAFATTEAEPVERIRAEISDI
AAQTGMSLGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|B1FEU4|B1FEU4_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia ambifaria IOP40-10 GN=rpoD PE=3 SV=1
-----------------PGTAEELEERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAETLLNDNAPA-ASSDD
EVEEEAEVA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVD
GLLDPNASDSADTDG-FS---A-------KEEEEEEEDDDGAAQATANAAQLEALKRASLDKFSQISEWFDKMRRAFEK-----------EGYKSKSYLK
AQETIQTELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHVVDKCGMPRSEFIARFPGSETDLDWAEKIAA-EGHSYSAVLSRNIPAIREQQQRLLDL
QARVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTVAPADAALHASMRDVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|C6XRI0|C6XRI0_HIRBI RNA polymerase sigma factor RpoD OS=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) GN=rpoD PE=3 SV=1
-----------------NQDGPVLDLSNASVKKFIAAGKARGFITHDELNKVLPSDE--PDQIEDVMSALSEMGINVVDSDEEGEGDDEAS--------S
DKAKSTAAA---------T--GGRSDRYDRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDAMIRGLCESPLTFEAIMVWRQELEDERVLLRDIID
LYAAANGGVPDNSAAAVA---L-------EKGKEDDDDDDFDDGGAMSMAMEAELREGVTDILDNVASEFQAYRRLQEKL----------VGKDSEEYVK
LQDDIIENLKKLHLNNARIETLVEQLYAINKRLMGLEGGLMRLADAHGVPRKSFLDNYFGTELEPDWGTRVSLIS-AKWKKFIAAETNKVEEMRSEISSL
AQEMGVPIEDFRRIVATVQKGEREARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTQRQMLHEIGREPTPEELAEKLGLPLEKIRKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|R7KL95|R7KL95_9BURK RNA polymerase sigma factor RpoD OS=Sutterella sp. CAG:521 GN=rpoD PE=3 SV=1
------------------YQNGASELRLQKLRALIVSAKRNGFVTYEQLSEVLPEQVE-DEAIAKLEHAFSFLGIQVLEQPPAEDEILNDSPLSL-VQED
DDEDDDEDV---------L--SLVESDVSRTSDPMTMYTREMGAVPLLTREEEISIARRIENGFQAMMEAIADSPSALKTLVDMADMLRADEVSVEAIVD
GVTDEDIDSISMAEEKM--------------EADDDVQEVSIGASAMSSEQLKVLKETTLDILDTCKGYFDCMSQLPVDS---------------DQYRQ
LEVAVKEQLMRVRFTASTVRTLSDLLHDKAEAFKRIEQDAQRLVDVVGMPKAEFGRLFRDEGFSEVALRACLKSDR-PYVLALEKNFDSILHVQSVYSSL
AREARLPAQRMRELYAQMCKAEQSVREAKQEMINANLRLVISIAKHYLNRGLQFLDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWWIRQAITRALADQG
RTIRIPVHMVETLNKITRISKQYQQEYGHEPSYAYLAQEVGLTERRVRTIMRARREPVSIDSPVGDEEDSHLVDFIEDKTSLGPLERAENDNLKEVVHEV
LASLSPREAKVLMLRYGIDTSTEHTLEELGRQFVVTRERIRQIEAKALRKLRHPSRANKLRGFLD-
>tr|A0A0M3TA36|A0A0M3TA36_9SPHN RNA polymerase sigma factor RpoD OS=Altererythrobacter epoxidivorans GN=rpoD PE=3 SV=1
-----------------KDDAPLIDLNEAQIKKLISKAKKKGYVTYDELNEALPSGE--PDQIEDIQTALSEMGVQIVENDEEAEAEEQDAEVE------
-TAKKTTAA---------A--AKKTATGERTDDPVRMYLREMGAVELLSREGEIAIAKRIESGRDMMIMGLCESPITFHAIIQWSEALNNEDMQLREILD
LLSKEPPADKLADDAEDD---D-------DDGSSKRREEEDEEDNTMSLQMEAALKPDAIERFARITKLFKTFEKLQAER----------VGDKERKYEA
LREELTAEVESVQFHATKIEFLVDNLYAFNRRLTALGGQMLRLAERHKVKRIDFLNAYVGNELDENWLSEKAKKD-KKWAAFAEKEADAIDRIRTEIADI
ASQTGMSLEEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEEGREPTPEEMAARLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A5P797|A5P797_9SPHN RNA polymerase sigma factor RpoD OS=Erythrobacter sp. SD-21 GN=rpoD PE=3 SV=1
-----------------KDDAPLIDLNEASIKKLITKAKKKGYVTYDELNDALPQGE--SDQIEDIQSALSEMGVQIVEHDEDAEPEEVEEIAP------
-KEKDVKKA---------P--AKKAATEGRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMIMGLCQSPITFHAIIQWSEALNNEEMQLREILD
LLSKEPPADKLNDDAEDD---D-------DDGSS-KSDDDEDEDNTMSLQMEAALKPDAIERFARIKDLFGKFEKLQKER----------VGEKEKKYEA
LSDQLTAEVESVQFHATKIEFLVDNLYAFNRRLTALGGQMLRLAERHKVKRIDFLDAYIGNELDDSWMDDRVKKD-KKWAAFAEKEADAIDRIRTEISDI
ASATGMALPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRCSRQFLHDQGREPTPEEMAEKLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A074MEZ1|A0A074MEZ1_ERYLO RNA polymerase sigma factor RpoD OS=Erythrobacter longus GN=rpoD PE=3 SV=1
-----------------KDDAPLIDLNEASVKKLMTKAKKKGYITYDELNAALPSGE--PDKIEDIQTALSEMGVQIVENDEEAEAEEQEAEVE------
-KPAAAAKP---------A--AKKTGTGERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMIMGLCQSPITFHAIIQWSEALNSEDMQLREILD
LLSKEPPPDKMEEENEEA---E-------KGGEGSKKDDEEEEDNTLSLQMEAALKPDAIERFARITKLFKSFEKLQLER----------VGGKENKYEK
LSEELTAEVESVQFHAAKIEFLVDNLYAFNRRLTALGGQMLRLAERHKIKRIDFLKSYVGNELDDAWIAERAAKD-KKWAAFAEKEEGALDRIRTEITDI
AANTGMALEEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEEGREPTPEEMAARLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0D5LQ19|A0A0D5LQ19_9RHIZ RNA polymerase sigma factor RpoD OS=Martelella endophytica GN=rpoD PE=3 SV=1
-----------------GHDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSSE--SEQIEDTMAMLSDMGINVIEDEDEVDHDDSDNS----SDDN
DTTGTAVA----------A--TKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIESGRETMIAGLCESPLTFQALIIWRDELNEGTTLLREIID
LYSGPEAKAAPQFQSPE--------------V-QPEEDEEDEDESNLSLAMEAELRPQVMDTLDTIAETYVKLRKLQDQQ----------VTGQERRYKE
LKEGLITAVKSLSLNQNRIDLLVEQLYDINKRLVENEGKLLRMAVNRGVKRDDFLEHYHGAELDPNWMKSIGNLSAKGWKEFASRDGADIKALRTEIQSL
ATETGISIAEFRRIVHMVKKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLNMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0N1AAB3|A0A0N1AAB3_9RHIZ RNA polymerase sigma factor RpoD OS=Rhizobium sp. AAP43 GN=rpoD PE=3 SV=1
-----------------ATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEE--SEQIEDTMSMLSDMGINVIEDEDAEETAA--------DSDD
DAAGTAVA----------T--AKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWRDELNEGTTLLREIID
LYSGPEAKAAPQFQSPE--------------M-PPEEEEEDEDESNLSLAMEAELRPQVMETLDVIADTYKKLRKLQDQQ----------VAGQERRYKE
LKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYSGTELDPNWMKSIANLSARGWKDFAREESQTIRDIRGEIQNL
ATETGISITEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A074JV55|A0A074JV55_9PROT RNA polymerase sigma factor RpoD OS=Thalassospira permensis NBRC 106175 GN=rpoD PE=3 SV=1
-----------------TADGPLLDTYKAAIKKLIAKGKEKGHISVDELNAALPSEH--SEQIEDVMSNLNEMGINVIDGED-GDDSDD-----------
---KDSDPS---------G--NISEDDVGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGICESPLTIRAIVNWHDQLQAGNLLLRDVID
LYGGGPDAEIAAAEGDE------------AEGDGDDEDDDENEQVNVSLKMEEELTEQVLEKFELIAKTYEKLHKAQEQR----------LGETEKRYAK
LKGEMVDLMEDVHLNNFRIEELLDHLTGLNNRLLGLEGKLLRFADRCKIKRPDFVKQYQGHELDPNWMERVSELPGKGWKAFIERYPDEIAQLREQVGGV
SAEVGLPIGEFRRVYGVVNKGEREAARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A8TZS5|A8TZS5_9PROT RNA polymerase sigma factor RpoD OS=alpha proteobacterium BAL199 GN=rpoD PE=3 SV=1
-----------------TPDGPLMDNINQAVKNLIKKGKERGFLTYDEVNAALPQEE--SEQIEDIMSALNEMGVNVVENEDDGDQSEK-----------
---TEAKLA---------G--NVSDDDVGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTLRALVNWRDQLKEGTVLLRDIID
LYGAEVETNDTS--------------------EGENDDDSDDEENNPSLAMEQQLLPQVLETFDKIADTYGKMVRMQKRR----------FGETERKYEK
LKGELIEGMESVRLHNARIEALVEQLYTLNRRLSQVDIRLWKQADRVGVSRKSFMEEHFGNELEPDWLERVATVD-ARWRKFAETAAEEVSEAREHLAMI
SADAGLTIGEFRRIVQTVQKGEREAGRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLVMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAIHANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|K2EIM6|K2EIM6_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
-----------------EKENKNAALGEKAVKQLLAQGKQRGYITYEELNETLPEDK--SEQIEDIMSMISDMGINIVEDEEAEQEDTKQTA--------
---KDNEEE---------E--TVEASEVGKTDDPVRLYLREMGSVELLSREGEIEIAKRIESGREMMIGAICESPLTIRAIVTWRDALNKDQMLLRDIID
IYTNGPSEEDADNFDEE--------------EEIEEESEYDDESAGLSVAMEDSLRPKVVETFNQIAKTYTQLRKLQEQR----------LGATEKKYEE
IRKELIELMEGIHLNSSRIEQLVEQLYTLNRKLVGLEGRLLRLAEAAGVKREVFLENYYGSELAPEWFDKLETLSSKGWKTFLDKHKEEALTIRKIIAEV
ADESGLPISEFRRILGTVQKGERDSTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELANKLKMPLDKVRKVMKIAKEPISLETPIGDEEDGHLGDFIEDKNAVVPVDAAVLSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFAVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|E0XRN2|E0XRN2_9PROT RNA polymerase sigma factor RpoD OS=uncultured alpha proteobacterium HF0010_30A23 GN=rpoD PE=3 SV=1
-----------------DAAGGAQDTVLIAVRKLTERAKANGSVTYDDINEFLPEDQ--SDQIEDVMAQLSEAGVTVTESENADAEKEST----------
---DLANPT---------G--NIKDEDVGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREDMIAGICESPLTFSALMSWRQSLQEEVVLLRDVID
LYAAYMRSIAGDDEDPND---P-------A-AAASDDDDDDDEDNSVSLAMEGILREDVMEALDVIAGAYGGLHKVQKDR----------MGEIEAAYEE
GRDTVIRAMKLIRLNNNLIDQLVDQMKSINKAIIGHEIKLMKLSDRCKIPRDEFIDEYFENEIDPSWLERMAEAD-ASWKMLYERYGSMAKEIREDIADI
IHQVDLPVSEFKRIVEKVQKGERDSNRAKAEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREATPEELAARLGMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIKDENAIIPVEAAINNNLRESTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|D5BP42|D5BP42_PUNMI RNA polymerase sigma factor RpoD OS=Puniceispirillum marinum (strain IMCC1322) GN=rpoD PE=3 SV=1
-----------------ASQASSADAAQQTIKTLIKIGKERGFVTHDELNAALPAED--SEQIDDVMSSLSEMGVSVVDSAETDENNEE-----------
-QAEGGKAA---------G--NLSDSDVSGTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRALMHWRDQIADGVVPLRDIID
LHTKLNGGPITDQNVINA---M-------NDSTRDSHDDEDSEDINMSLAMEDAVRDDVMAMFDEIATVFKAFTKSQDRR----------LGESEVAHLE
LKIKLCELMEGVIFNTGRIEALSEQLFTLNRHVTGIEGRLMRLAIDSGIPRAQVLEAWSWREVIEGWPG--SDFSTKAWQKLDKNHSEEITELQDKIRLV
VDDVSLAIPEFREVIQTIQRGQREAARAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLSMPIDKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAIHANLRETTTRV
LASLTAREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLE-
>tr|E0MJ58|E0MJ58_9RHOB RNA polymerase sigma factor RpoD OS=Ahrensia sp. R2A130 GN=rpoD PE=3 SV=1
-----------------AADRPLLDLNDDKVKKMIKAAKKRGFVTVDELNAVMPSDE--PDQIEDTMSMLSEMGINVVEEEESEEAPEV-----------
-EAGKKAVA---------T--VAKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELLEENILLRDIID
LYAGPDAKQNVPVNPNA------------PANKTDDDDDDEDDEAALSLAMEAELKPKVLEIFDSIAGNYKKLRKLQDTY----------V-EQEKRLVA
LKEEIVVSVKSLELNLNRIEALVEQLYDINKRLVQSEGRLMRLAEKHGVARELFLEEYRGAELDPNWIRRIANLGAKGWKEFCANEKPEIKELRADIQML
SHETGLDTGEFRRIVHQVQKGERESRIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSTKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|R5QUT4|R5QUT4_9PROT RNA polymerase sigma factor RpoD OS=Proteobacteria bacterium CAG:495 GN=rpoD PE=3 SV=1
-----------------SADAPLIDSLGSAVKRLIDKGKLRGYITVEELNKALPPER--SEHIEDIMAGISDMGISIIAEADVDSFEDMVEDD-------
-EIDEEDEA---------G--NFDEKELGRNDDPVRMYLKEMGTVELLSREGEIAIAKRIEAGKTVMIDGLCESPMTIKAIAGWRDELLDGTMQLRDIVD
LYGDDVDDLAFEEDDAAA---N-------VDHGEDDDLDGNGNRAAASVAMEEALKEPVLDILNKISSYYDDLKKIQNQR----------VGKVEKKYLQ
VKKELVELMSSIHLNATRVEQLVEQLNSLNKRLMGLEGKLLRYALSCKIKREDFLDAYQKSELDPNWLEEVSHKKDKHWQAFVEKYGLEITELRDSVAQM
AQECGLPITEYRRMVDTIKKGEREAERAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLAEMGREPVPEELAQRLSMPLEKVRKVMKIAKEPVSLEAPVGDEEDSSLGDFIADDSALQPLDSAIHSNLKETCTRI
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|R5XSX3|R5XSX3_9PROT RNA polymerase sigma factor RpoD OS=Acetobacter sp. CAG:267 GN=rpoD PE=3 SV=1
-----------------TSDAPLLDSFGSALKKLIAKGKELGYITIEELNQALPSEK--SDQIEDIMAAISDMEISIISADETEDFDEGGETE-------
-VLEDDDAV---------G--NLDAKDLMRSDDPVRMYLKEMGTVELLSREGEIAIAKRIEAGKTVMIGGLCENPMTLKAISKWRDELVAGTMQLRNIID
LYGVDSEAIVYDDDAAP----V-------DDDGELDDEDEEGGHSTTSIAMEAALFEPVLDILNKISSYYDELSRIQAQR----------MGRLEKKYIN
IKKELIELMSSIHLNSARVEELVEQLNELNRRLMGVEGKLMRLALNARVKREDFLEAYQRSELDPHWVEKMAEKKDKHWQNFINDNRAEITELRNSLAEM
SKECGLPISEYRKMVDTIKRGEREAERAKKEMIEANLRLVISISKKYTNRGMQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMMLEMGREPIPEELAKRLSMPVDKIRKVMKIAKEPVSLEAPVGDEEDSSLGDFIADENALQPIDSAIHSNLKETCTRI
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSKKLRSFLD-
>tr|Q13JY0|Q13JY0_BURXL RNA polymerase sigma factor RpoD OS=Burkholderia xenovorans (strain LB400) GN=rpoD PE=3 SV=1
-----------------SGKENENESGRADLKALIKLGTERGFVIRGEISDCLPERL--PDAIENVVRAFSEMGIAVFEQAPDAESMMNDHPAAV-ATDE
QIEEEAVTA---------I--SSVDAEFGRTTDPVRMYMREMGTTELLTRQGEIALAQRIEEGRNGMIRAISSCPATIAEILAIADGVACGETAIDEFVD
GLVDPAATATDDMIAVP--------------GDEDDDGA----EAEPADQHIETLKHDALAKFAKVADWFSQLRDAYETQ-----------GY--ARYRA
AQAAIEAELMTIRFTARTIERLCGALRLSADEVRTIEREIARAVERCGVPRDTFIAHFRGNETDPAWARQLAAAGQ-PFSSVLERNLPAIGLEQEKLLAL
QKRVVLPLDEFREVCRALSASEAKTLRAKGEMIEANLRLVISIAKRYTNRGLLFLDLIQEGNIGLMRAVDKFEYRRGYKFSTYATWWIRQAVSRSIADQA
RTIRVPVHMIESLNKLKRISRKILQETGNEPDAALLAQLMEMQEQKVRAMLRIVKEPVSLDASVGENDDTSIGDLIEDSAAILPDDAALHAGMRDAISEA
LMTLTPREAKILRLRFGIESSRDHTLEELGEQFELTRERIRQIEVKALRKLRHPARSARLKSFLD-
>tr|Q0AMR6|Q0AMR6_MARMM RNA polymerase sigma factor RpoD OS=Maricaulis maris (strain MCS10) GN=rpoD PE=3 SV=1
-----------------NSDGPLLDLTDQSVKNMVKTAKKRGYVTHDELNAVLPSEE--SEQIEDVLAQLSEMGINVVDNDSDVDDDAETPKPAKGDSDD
EA-SKTAVT---------G--LNTPSSADRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNAMIRGLCESPLTFEAIMVWRDELQEGQVLLRDIID
LYGGQQAEAAEDDDENAD-----------GTSSSDDDDDDDEDGVSLSLAMEAELRDGVMETLDSIATDFAAFRKLQDKL----------VGKSREKYEG
FQNAIVTNLNTMHLNNARIEALVEQLYAINKERMALEGKLLRMADAHGVPRAQFMDSYFGNELNPEWPTSMASTS-KAWARFIDREGVDAGKIRDDLADL
TQRAGVPIEDLRRIVRTVQKGEREARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A3UFU4|A3UFU4_9RHOB RNA polymerase sigma factor RpoD OS=Oceanicaulis sp. HTCC2633 GN=rpoD PE=3 SV=1
-----------------NQDGPLLDLTDQTVKAMIKTAKKRGYVTHDELNKVLPSEE--SEQIEDILAQLSEMGITVVDSEEDVDNESSS------E-DD
EKAKSEVAA---------G--QNTTSAQDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNAMIRGLCESPLTFEAIMVWRDELQEGQVLLRDIID
LYGGVREDATAVSDDEEE-----------GEGESDEDGDDEDDGANMSLAMEAELRDGVMETLDAIATDFDVFRQLQDRL----------VGKDQAAYDD
VFERIVANLNSLHLNNARIEALVEQLDAINKKLMGLEGKLLRMAEAHGVPRTDFLKSYQGHELDPNWLKDMAGKS-KAWGRFVEREEKEAGELREQIATL
AQESGVPIDDYRRIVATVQKGAREARVAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIHSNLRETTTLV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0P7V3F4|A0A0P7V3F4_9RHOB RNA polymerase primary sigma factor OS=Oceanicaulis sp. HLUCCA04 GN=rpoD PE=4 SV=1
-----------------NQDGPLLDLNDLSVKAMVKAAKKRGYVTHDELNKVLPSEE--SEQIEDVLSQLSEMGITVVDSEEEVDDAPAG------DEEE
EKSK-TAVA---------G--QNTTSAQDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNAMIRGLCESPLTFEAIMVWREELQSGQVLLRDIID
LYGGVREDHSETGAPD-A-----------GRNAAGEEEEDEDDGANLSLAMEAELRDDVMETLDAVASDFTSFRKLQDKL----------VGKDRDTYEG
VRESIVANLNSLNLNNARIEALVEQLDAINKRLVVLEGKLLRSAEAHGVPRHEFMSAYQGHELDPNWLDDWKAKS-APWKKFAEREEKEAAQIRENIAEL
ATESGVPIDDFRRIVATVQKGAREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIHSNLRETTTLV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A084SNE2|A0A084SNE2_9DELT RNA polymerase sigma factor RpoD OS=Cystobacter violaceus Cb vi76 GN=rpoD PE=3 SV=1
-----------------DEVDEEPIADRKEVKDLLAAGREKGFLTYDEVNDALPADI--SDQIDDVMSMFGDNDIEIVDAQKAAQSTIKPTVAVEEADED
--------E---------K--DEDDEPGGKSNDPVRLYLRKMGSVSLLTREGEVEIAKRIEDGEKEVLRALLACRVAMMEILDIGNRLKNGKLRVRDVIK
DAPEEAQS--EGEEPEV------------------SEEGAEGEGQPAQLEQINKQIERIRKFAKDCEALEAELSGKK-KL-----------TDLKQEVKD
LRTKMMEVLEEMRLNKKQVDRIVLNLKGLIERVEKAESELREQERRYGVPMDTLRELLREAKEDPEAMKKAQRKLN-ATSEQIEAVERDVRTATRNIKRV
EEEANLEVDELRRNYEAIRLGERRAERAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPSDAVINMNLAEQTRKV
LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLRSFVE-
>tr|F2NIX3|F2NIX3_DESAR RNA polymerase sigma factor RpoD OS=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) GN=rpoD PE=3 SV=1
---------------------MGKGVSLSDLGEYIHLEDPHGFISFGEYTEEGEAEP--KETAGDTIV-LDDLDFDLLELPTKVNFS-------------
-GYEPAEIL---------V--DLEAGASVRLDDPVKMYLREMGTVSLLTREGEIEIAKRIEEGCKEIVSALLETKFGIRAILEIAHRLEQEKPSHSEECK
ELL---------------------------------EDGLEQGIQP---DRLQQVIQGIYRLNDLIKRLQSCLASK--TL-----------SELQTRLER
YRQRMVEQFKSLKLPQHQLNRIIRQINDYSYAVRASQKEIDRCLQKIGLDAPEFRHLCRKLQEKLLSGISPELDGE-LSIVEIAQLAESWRGAQRRLQKI
ESETGLSAEKLLEIQKRVQRGDRQASRAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYERGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLLRTSRYLVQEIGREPTPEELAEKMEYPLEKVRKVLKIAKEPISLETPIGEEEDSYLADFIEDKKISSPTEAVENLNLAEITRKV
LSTLTPREEKVIRLRFGIGEKTDHTLEEVGKKFMVTRERIRQIEAKALRKLRHASRLKRLQSFAE-
>tr|H8MN05|H8MN05_CORCM RNA polymerase sigma factor RpoD OS=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) GN=rpoD PE=3 SV
-----------------DDVEEDPVAERKEVKDLLAAGREKGFLTYDEVNDALPADI--SDQIDDVMSMFGDNDIEIVDAQKAAQSNIKPTVAVEEQDED
--------E---------K--DEDDEPGGKSNDPVRLYLRKMGSVSLLTREGEVEIAKRIEEGEKEVLRALLACRVAVADILDISNRLKTGKLRVRDVIK
DAPEEAQS--ENAEEPA--------------------EAAE-GEAPAQLEQISKQIERFRKFAKDCEVLEEELSGKK-KL-----------TELKQEVKD
LRTKMMEVLEEMRLNKKQVDRIVLNLKGLIERVEKAEEELGDLERRYQVNMKDLRPQLKESRENPNIAKKLQKQLN-FTPEQLEVLDRDVRTAVRKIKRV
EEEANLPVDALRRNYDAIRLGEKRAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPADAVINMNLAEQTRKV
LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLRSFVE-
>tr|W0SHY7|W0SHY7_9RHOO RNA polymerase sigma factor RpoD OS=Sulfuritalea hydrogenivorans sk43H GN=rpoD PE=3 SV=1
-----------------EAKLIDLDTKRTRLKNLIALGKERGYLTYAEINDHLPDDLVDAEQIESIISTFNDMSIQVFDEAPAVDDLLNESAPA-PVDVA
EVEEEAEQA---------L--STVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMIMAISACPTTIAEMLETAGKVARDEMRIDELVD
GLIDPNATDEDIEALAED---E---------VE-EDTEDDEDDGGARISASLLQLKQDALERFSVIHALFAKLQPTLAK-----------KGSQDKGYLR
LQKQISDELMNIRFTAKSIERLCDSVRGMVEAVRSHERKILHCVDKAHMPRAHFIKVFPGHEIDMEWLKHEVQ-SGKPYAAQLMRAAPNILEEQQRLIDL
QTRIGIPLKELKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDQATLSPGDAALFASLREVTKEV
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEKLRSFLD-
>tr|A0A0C5JR40|A0A0C5JR40_9RHOO RNA polymerase sigma factor RpoD OS=Rhodocyclaceae bacterium PG1-Ca6 GN=rpoD PE=3 SV=1
-----------------QAAPLDMDAKRSRLKTLIALGKERGYLTYAEINDHLPDELVDAEQIESIIATFADMSIQVFDEAPAVEDMLNQTTPA-PVDAE
EVEEQAEQA---------L--STVDSEFGRTTDPVRMYMREMGSVGLLTRESEIEIAKRIEDGLKHMVMAISACPTTIAAMLDMAARVARDEMRIDELID
GLIDPNASDEELEAAAAE---E---------E----DFADGDDGSAQVSASLLKLKQDALERFSLIHALYGKLQQTLSK-----------KGSEDKSYLR
VKKQIADELLNIRFTAKTIERLCGSVRSIVDAVRSHERKILHCVDKSHMPRQHFIKAFPGNEVNMDWVKKEIQ-SGKPYAALLMRNAPNVLDEQHKLIDL
QNSTGIPLKELKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPLPAVLAEKMEMPEDKIRKILKISKEPISMETPIGDDDDSHLGDFIEDQATLLPNEAALFSSLRDVTKEI
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEKLRSFLD-
>tr|A0A0E9MAW8|A0A0E9MAW8_9PROT RNA polymerase sigma factor RpoD OS=Ferriphaselus amnicola GN=rpoD PE=3 SV=1
-----------------TDAVQNVEERRTRLKALIALGKERGYLTYAEINDHLPE-MLEAEQIEGVVSMINDMGITVCDEAPDAEALMSEATAP-VA-DE
DAVEEAEAA---------LS-STVDSEFGRTTDPVRMYMREMGTVELLTREDEIEIARRIEDGLKHMIQAISACPATIIEILALVEKVTKDELRIDEVID
GFIDTDVEEEVVAEVEP------------E--------EEEEDGEAVSAANLAQLKVDALERFAIISDLFAKLNKATEK-----------HGYRSKQYNQ
FQEQISTELMQFRFSAKQVDALCDTMRNLVDEVRGHERGIQDCVTKSKMPRPHFIKLFVGNEDNLEWIPSEIA-ANKAYSSTLDRFKYDIMERQQKLLDL
QKRIGLPIKDLKEINKQMTNGEAKARRAKRDMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGGEPDAATLAEKMEMPEDKIRKILKIAKEPISMETPVGDDDDSHLGDFIEDHNTTVPVDAAVYESLRTVTKDI
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLKSFLD-
>tr|D5CMJ7|D5CMJ7_SIDLE RNA polymerase sigma factor RpoD OS=Sideroxydans lithotrophicus (strain ES-1) GN=rpoD PE=3 SV=1
-----------------VDPSQEIEARRTRLKALILLGKERGYLTFAEINDHLPD-MLEVEQVEGVVSMINDMGITVCDVAPDTESLMNETAPP-VA-DE
DAAEEAEAA---------I--STVDSEFGRTTDPVRMYMREMGVVNLLTRQDEIEIAKRIEDGLKHMIQAISACPATIAEILALADKVAKEELRIDELID
GFIDTQDEAMVSEVAEEE---E-------T--------ESEEDGEAAAAANLAQLKEDALVRFALISDLFTKLGKAYEK-----------YGYRSKQYDK
LQQQISDELMQFRFSAKQVDALCETMRGLVEEVRSCERSIQECVTKAHMPRTHFIKVFPLNEGNLEWVKHEMA-SKKAYSETLSRYEAAIVDQQKKMLAL
QQRVGIPILDLKEINKQMTNGEAKARRAKRDMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGMEADAATLAIKMEMPEDKIRKILKIAKEPISMETPVGDDDDSHLGDFIEDANSLAPIEAAVYDSLRNVTKDI
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLKSFLD-
>tr|D9SJR0|D9SJR0_GALCS RNA polymerase sigma factor RpoD OS=Gallionella capsiferriformans (strain ES-2) GN=rpoD PE=3 SV=1
-----------------AELQQDIDARRTSLKALIVLGKERGYLTYAEINDHLPD-MLEVEQIESVASMINDMGIRVCDVAPDAEALMTDSAPT-AA-DE
DAAEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVDLLTREKEIEIAKRIEEGQRNMIQAISACPVTIAEILSLAAKIEIDEIRVNELID
GFVDIELEDESGLTASDD---Q-------EQGDEEDEEAMAAASAAAAAADLAQLKADALARFAVIADLFSKMGKAYEK-----------YGYLSAQYNV
HQAGITEELMAFRFTAKQVDALCNTMRGLVEEIRTNERGIQDCVTKSKMPRPHFIKSFVGHEVDMDWLAQEIK-AAKPYSELLVRYQHAIVEKQQNLINM
QKRVGLPITDLKEINRRMTNGEARSHRAKRDMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEADAATLAEKMEMTEDKIHKILKIAKEPISMETPVGDDDDSHLGDFIEDSNTTVPIEAAVYESLRSATSDI
LDSLTQREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLKSFLD-
>tr|Q47IP8|Q47IP8_DECAR RNA polymerase sigma factor RpoD OS=Dechloromonas aromatica (strain RCB) GN=rpoD PE=3 SV=1
-----------------TPEPLDAEARKMRLKALIKLGKERGYLTYAEINDHLPDDVVDAESIEAIISTFSEMSIQVFDEAPAAEDLMSDTAAV-AADDE
EVEAQAEQA---------L--STVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGLKHMIQAIAACPTTISDILELAAKVESDEMRIDELVD
GLIDPNAVEEAPAAEMPE---A---------EE-DGDDDGEGAGGGAAAASLLQLKTDALERFKNIKGIHAKMQKMLPT-----------KGSHDKVYIK
LLQQVSDELMNIRFTSRSIERLCDSVRGMVEQVRGCERKIQQCVDRVKMPRPHFIQSFPGNEINLDWADAEVAAAPKTYVAILTRNAPDIKEEQKKLLAL
QDRIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAKKMDMPEDKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDSGTLAPADAAMYSSLRGVTKEI
LDTLTTREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDKLRSFVD-
>tr|F5RCX5|F5RCX5_METUF RNA polymerase sigma factor RpoD OS=Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 / FAM5) GN=rpoD PE=3 SV=1
-----------------NALPMDADQRRLRLKTLIALGKERGYLTYAEINDHLPDDIVDAEQIESIISTFNDMGIRVFDEAPASEDLMGENAPA-VVDAS
EVEEEAEQA---------L--STVESEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMIQAISACPTTISEILDMADRVARDEMRIDELID
GLIDPNAIEEEAAAASAE---A---------EE-EGEEEDEDGEGGAMSASLIQLKADALERFESIRTLYTKMQSTLDK-----------KGSQDKTYLK
LQKQLSDELMNIRFTARMIEKLCDSVRNMVESARKHERKILECVDKGNMPRAHFIKVFPGNETNIDWLKGEIT-AAKANGAQLLRAAPAIIEEQGKLIDI
QDRIGLPLKELKDINKQMSTGEAKMRRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIRMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATLAPTDAALFASLRDITKEV
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLD-
>tr|A0A0K6IX93|A0A0K6IX93_9PROT RNA polymerase sigma factor RpoD OS=Tepidiphilus thermophilus GN=rpoD PE=3 SV=1
-----------------NHSPADAEKRRTQIKALIALGKERGYLTYAEINDHLPDDIVDSEQIEGIITTFNNLGIQVFEEAPAPEELMAEAPAV-GGADD
DIEEEAEQA---------L--SSVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGLKNMVQAIAACPLTIAHMIETIGKIERDEIRIDEVVD
GLIDHEDLAPLAEEDSEA---E-------AAGD-LDDESDEDRAARIQAANLAELKRGAMQHFERMRSLYAELDRALEA-----------YGSEDPRYTA
LRDQIAGELLHIRFTARYIEQLCDVIRSMIEQVRQHERAVSKCTEIGTMPRDYFIKVFPEHETDLDWITREIE-AGKPWSESMVKIYPSVLEEQNRIREI
EQRARIPLKELKDINKRMSMGEAKMRAAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGEEPDAAELARRMEMPEEKIRKIRKIAKEPISMETPIGDDEDSHLGEFIEDTSVLAPVDAALIADLREATREV
LETLNPREAKVLRMRFGIEMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLD-
>tr|M1LMH5|M1LMH5_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Kinetoplastibacterium desouzaii TCC079E GN=rpoD PE=3 SV=1
-----------------PISQEEYESRRNNLKNLIKLGKEKGYLTFSEINDTLPDDLFDDEVVDTIVSTFNDMGISVYEQAPDVDTLMSETAPI-ISNDD
DVEDETEVA---------L--TTVDSDFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLSLMIASISACPTTLNEILLDIDRVSSGQIQIDEVVD
GLIDPDDGEEY-AGIGF---------------IEEE-EFDEDTTGVMSSKQLENLKTKSLQKFSEVSKLLEQMKFAYYN-----------HGYCSKDYLE
AKDSIQKELMGVRFNAKMVEKLADSIRSHMKEIRIIERNILDCVEKAGMPREDFISFFVGKESNLNWLIEDPV-INSKYFKLLEPFSLMIQSVQKKLLEI
QEKIILPIKDFKEINKQMTSGESKARKAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGMEPDPSVLSKQMDIPEDKIRKILKIAKEPISMETQIGDDDDSHLGDFIEDTTTLAPSDSALHGSMRDIVKEV
LDSLTPREAKVLRMRFGIEMNTDQTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLD-
>tr|M1M1D2|M1M1D2_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Kinetoplastibacterium galatii TCC219 GN=rpoD PE=3 SV=1
-----------------PISQEEYEERRNILKSLIKLGKDRGYLIYSEINDSLPDDLVDAEAIDSIVSTFGDMGITVYEQAPDVDTLMNENAAL-VSNDD
DVEDEAEAA---------L--TTVDSDFGRTTDPVRMYMREMGIVELLTREGEIEIAKRIEDGLKHMIMAISSCPIIVDDILQNIEKIHNEQVSIDDVVD
GLIDPEDGEEY-AGIGV---------------ADNN-NFDDPVAGGMSIKQLEELKTKSLIKFSNISKIYKKMEEDYNE-----------KGYRSEEYFI
MLKSIQEELLGVRFTAKIAERLADYIRSYIDKIRQIERAILNCVDKAGMSRDYFIGSFVNNEVDLNWIINEIN-INNNYSESLRNYVPMIQDLQKKLVDI
QNEILLPISEFKEINKKMTMGEAMARKAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGFEPDPSVISQKMDIPEDKIRKILKIAKEPISMETQIGDDDDSHLGDFIEDTTTLAPSDSALHGSMKNIVKEV
LDSLTPREAKVLRMRFGIEMNTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLD-
>tr|M1LU87|M1LU87_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Kinetoplastibacterium crithidii TCC036E GN=rpoD PE=3 SV=1
-----------------PISQEEYENRRNNLKNLIKLGKEKGYLTFGEINDSLPDDLADDEVFDTVVATFSDMGIAVYDKTPDIDTLMSENNT--VISND
DVEDEAEAA---------L--TTVDSDFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLSLMISAISACPTTVNEILLDIEKVNNDQLQIDEIVD
ALIDNSDCDPNISFHL-----------------SENEELLDMSSGIMSAKQLEELRTKSLEKFSAVTSHFKKMQKAYVE-----------NGYNSEDYLE
AKNLIQQELMGVRFNAKMIAKLADSIRSHMQEIRSVEKSIINCVDKVGMPRELFLQCFIGNESNTQWMFAEPI-INSKYFQALEPLVLLIQNKQKKLLEI
QERIVLPIQEFKEINKQMTTGENKSLKAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPSVLSKKMDIPEDKIRKILKIAKEPISMETQIGDD-DSHLGDFIEDTNTLAPSDSALHSSMKNIVKEV
LDSLTPREAKVLRMRFGIEMHTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKLKSFLD-
>tr|A0A0F7KG12|A0A0F7KG12_9PROT RNA polymerase sigma factor RpoD OS=Nitrosomonas communis GN=rpoD PE=3 SV=1
-----------------SSAPQDIEARKMRLKKLIVQGKERGYLTYAEINDHLPDDMLDAEQIEGVISMINDMGISVHDEAPDAEALMSDTATA-VT-DE
DVVEEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGSVELLTRESEIEIAKRIEDGLRHMIQAISACPTIIADILDLATEVENDRLRVDELVD
GFLDDDAQEILNEEMSDE---P-------LE-------MEDESGVAVASASLIKLKNDVLERFLEIREAYNEMQKIIEK-----------N-GEDKKYKA
LQEKISSELMAMRFSAKMVEKLCDSQRDLVNEIRNCERKIMDCVTKANMPRNYFIKGFPGNETNLEWVKSEVE-SNKPCGQSLRHFMPAIMEQQQCLLSL
QEQAKIPIKELKEINRRMTTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPEPALLAEKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDSSTVAPADAAVYASLRNATKDV
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPARSDRLRSFLD-
>tr|Q2Y7C0|Q2Y7C0_NITMU RNA polymerase sigma factor RpoD OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpoD PE=3 SV=1
-----------------AAASQELEARRMRLKNLIVQGKERGYLTYAEINDHLPDDMLDAEQIENIISMINDVGISVYDEAPDAETLMSETAPT-VA-DE
DVVEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGSVELLTRESEIEIAKRIEDGLKHMIQAISACPTTIAGILEFADRVSKDEMRVDELVD
GLLDPSTEEIISEEISDE---S-------LE-------AEDEDVTAVANANLLKLKNDALERFAVVQKAYDEMQKVLEK-----------KGSGNKAYKD
IQEQISSELMAIRFSAKMVERLCDTQRALVDEMRGYERKIMECVSKVGMSRNHFIKTFPGNESNLNWVDEEIA-LGKPYSAALERYRPEIVEQQQNLLAL
QKQVGIPLKELKEINRRMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPEPAVLAQKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDSATMAPADAAVYASLRDVTKDI
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLRSFLD-
>tr|F9ZDD3|F9ZDD3_9PROT RNA polymerase sigma factor RpoD OS=Nitrosomonas sp. AL212 GN=rpoD PE=3 SV=1
-----------------NSQPQDIEARRMRLKILIGLGKERGYLTYAEINDHLPDDMLDAEQIEGIISMINDMGISVHDEAPDVETLMSDAATT-VA-DE
DVAEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGSVGLLTRESEIEIAKRIEGGLRHMIQAISACPPIIAKIIDLAVEVEKETMRIDEVVD
GLLDANAQDIINEELSEE---A-------IELAGDEDEDEDSDGAAIASADLLKLKADALERFAVIRQMHNEMQALLES-----------DGPYHQGYIE
LQDKISSELMAIRFSAKMMEKLCDTQRELVGDVRNYERKIMDCVSKAKMPRNHFIKTFPGNETNLDWIAQEIK-VGKPYSQALEHYKPAILEEQHNLLAL
RSKIGIPIKDLKEINRKMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPEPAVLAQKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDAATMAPADAAVYASLRGVTKDI
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPARSERLRSFLD-
>tr|Q0AJ87|Q0AJ87_NITEC RNA polymerase sigma factor RpoD OS=Nitrosomonas eutropha (strain C91) GN=rpoD PE=3 SV=1
-----------------ISSGDDVELRRMRLKKLIMQGKERGYLTYSEINDHLPDDMLDADQIESIISMINDMGISVHDEAPDAEALMSDTATA-VA-DE
DVAEETEAA---------L--SSVDSEFGRTTDPVRMYMREMGSVGLLTRESEIEIAKRIEDGLRHMIQAISACPTIIENILGLAADVESGQLRADELVD
GFLDDDTEEIIGKGMPEE---S-------LD-------TEEE-QIASANADMLKMKNEVLERFAMIRQTYDDMKKIIDK-----------KGGQDKKYKQ
LQEKISAELMAMRFSAKMVERLCDTQRAIVNDIRSCERKIAECVVRAKMPRNHFIKAFPGNETNIDWINSEVD-ANQPYSQSLEHYRPAVMEQQQKMLTL
QEQAGIPIKELKEINRRMTTGEAKARSAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPEPAVLAEKMEMTEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDVSTMEPADAAIYAGLRTVTKDV
LDSLTPREAKVLRMRFGIEMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPARSDRLRSFLD-
>tr|A0A089TKM7|A0A089TKM7_ALCXX RNA polymerase sigma factor RpoD OS=Achromobacter xylosoxidans C54 GN=rpoD PE=3 SV=1
-----------------PVSAEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLMSENAPVASNDDD
DVEDEAEAA---------L--TTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHVLRVREGQAQIDEVVD
GLVDPEDGEEYAGAGVS----------------ADEDESDDGPAGGMSSKQLEDLRVKALAKFDEVGKQFDKMRLSYEK-----------DGYKSDIYVR
AQESIQNELMGIRFTAKMVEKLADTLRNQVEEVRQLERAVLHCVDRAGMPRTHFIKVFPGNETNLQWVVDEVA-AGHPYAETLERQIPAVQELQQKLIDL
QTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTSTLAPSDAALHGSMRDVVKEV
LDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLE-
>tr|W8WX75|W8WX75_CASDE RNA polymerase sigma factor RpoD OS=Castellaniella defragrans 65Phen GN=rpoD PE=3 SV=1
-----------------QMTPEEQEARRNRLKILIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGISVYDQAPDAETLMSDNVPTAASD-D
DVEDEAEAA---------L--TTVDSDFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVMAIAACPTTVNEILEHVRRVREGSAQIDEVVD
GLIDE-EGEDYAGSGVA----------------SDE---DDGPAGGMSSKQLEYLRTKALKIFDEVEVWFDRMRQAFEA-----------EGYRSAAYVQ
AREAIHAQLMGVRFTAKMVERLADALRAQVAEVRAQERAAMACVTRAGMPRNHFIKAFPGNETNLGWVDEEVA-AGHDYSETLARHAPAIQEIQQKLIEL
QRNVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRINRQILQETGAEPDPATLAQKMDMPEDKVRKILKIAKEPISMETPIGDDDDSHLGDFIEDTGTVSPSDSALHGSMRDVVKEV
LDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLE-
>tr|A0A0F5JWL6|A0A0F5JWL6_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia andropogonis GN=rpoD PE=3 SV=1
-----------------PGTAEELEESRTKLRALIKLGKERGFLTFSEINDHLPDGIVESDAIEGIIGTFSDMGVRVYEQAPDAETLLNDNAPA-ASSDD
EVEEEAEVA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMVQAISACPTTIADILGMAERVANDEIRVDELVD
GLLDAEAAEAAANEAELA---S-------EDDEDEEDGDEGARQASANAAQLEALKRAALEKFGKISTEFSAMRDAYEK-----------EGYQSPAYLH
AQEAIQQELTSIRFTARTVERLCDTLRAQVEEVRSVERQLLAVVDRCGMSRAEFIQRFPGNETNLEWAQAIVD-ERHPYSAVLERNIPAIREQQQKLIDL
QARVVLPLGDLKETNRQMASGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNTVAPSDAALHSGMRDIVKDV
LDSLTPREAKVLRMRFGIEMSSDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|G2J956|G2J956_9BURK RNA polymerase sigma factor RpoD OS=Candidatus Glomeribacter gigasporarum BEG34 GN=rpoD PE=3 SV=1
-----------------ANNAAGLEERRAKLRALIKLGKERSFLTHAEINDHLPEDIVETEAIDTIIGTFSDMGIAVVDQAPDAEALLNDNAPA-ATSDD
E-VEEAEVA---------L--THVDSEFGRTTDPVRMYMREMGSIELLNRESEIEIAKRIEDGLKHMIQAISACPTTIAQILELAAHVKQDQLRIEELVD
GLIDLEEDADG-FSADF---------------SEDENEDDEEAAERANAAQLAELKRVSLDRFTRVGRWFDKMRRAYEK-----------EGYQSKAYLK
AQKTIQNELELIRFTARTIERLCDTLRAQVEEVRVIERRTLHVVDKCRMPRDEFIASFPDNETNLDWAPSLIH-ARRPYSVALERYLPEIHEHQQKLIEL
QARIVLPLKDLKEISRQMNAGELKARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDSSTLAARMEMPEDKIRKILKIAKEPISMETPIGDDEDSHLGDFIEDTHTVAPADAALQAGLQDAVKEL
LETLTPREAKVLRMRFGIEMSTDYTLEEVGKQFDVTRERIRQIEAKAMRKSRHPSRSDKLKPFLE-
>tr|E7RXV3|E7RXV3_9BURK RNA polymerase sigma factor RpoD OS=Lautropia mirabilis ATCC 51599 GN=rpoD PE=3 SV=1
-----------------GVTEEEMEARRSRLRQLIKLGKERGFLTYAEINDHLPEGLTEVEAIDQMIGTFSDMGISVYEQAPDTDSLLNDRTVT-SS-DD
DTEEEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGSVELLTREGEIVIAKKIEEGLKDMMHAISACPTTIAEVLEQADKVRAAQLRVDEIVD
GLLDPDADDEEMSFGPAR---S------------DGDDDDEASVAAMNNAKLEELKEEALSRFDSIGAAFEQMRQALET-----------DGYKSPAYLA
AQESVQRQLMSIRFTAKVVEKLCDMLRAQVDEVRTVERTILDCVNRVGMSREHFIKSFPGNETNLAWVENELA-GNPPYADVLARSIPDIQDLQQKLIDL
QVRVVLPLPDLKEINKRMAMGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEFRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGVEPDPATLAEKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTTTLAPSDAALHDSMREVVKEV
LDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLE-
>tr|E6PT41|E6PT41_9ZZZZ RNA polymerase sigma factor rpoD (Sigma-70) OS=mine drainage metagenome GN=rpoD PE=3 SV=1
-----------------NVTEEELGRRRQRLKNLIKLGKTRGFLTYGEINDHLPDNLADPDLLETIISMLNDMGIAVYEQAPDAQTLLNQHGPT-ASSEE
EAEEEAEAA---------L--SSVDSEFGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGLRKMMLAISASPATVAEILAMAARIAGNQLPVDEVVD
GMVSDDESDDYVAEEDVD---F-------A-LADEAEEDDEEAAAAASSVKLEELKAKALERFAQVHDAFMKMRRSYDK-----------DGYRSPSYLK
AQDQISKNLMEVRFTARTVEKLCDLLRSQVDEVRRHEREIRRVVDRCGMPQEEFIKSFPGHQLDLKWAEKLAA-SNKPYAPILARNLPSVQELQQRLIDT
QTRVVVPLQDFKDINAQMSRGEQEAREAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKVNRISRQYLQETGTEPDAAMLAEKMEMPEDKVRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTGMLAPTDAALQASLREVVKDI
LDSLTPREAKVLRMRFGIEMANDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPTRSDKLRSFLD-
>tr|A0A078BQD5|A0A078BQD5_9BURK RNA polymerase sigma factor RpoD OS=Thiomonas sp. CB2 GN=rpoD PE=3 SV=1
-----------------NITDEELGRRRARLKSLIKMGKTRGFLTYGEINDHIPDNLADPELMETIVSMLNDVGIAVYETTPDAQTLLNQHGPT-ASSEE
EAEEEAEAA---------L--SNVDSEFGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEDGLRQMMLAISASPSTVAEILAMAARIHNGELPVDEVVD
GMVSDDESDDYVAEEDVD---Y-------S-LDESGEED-EDGGAGATSMKLEELKGKALEAFADVHDAFMKMRRAYDK-----------DGYRSASYLK
AQEAISAALMEVRFTARTVEKLCNLLRAQVDEVRRYEREIRRAVDRCGMPQEEFIKSFPGHQLDLKWVDKHVA-SGKSYSVILSRNVPAIKELQQKLLDI
QTRVVVPLDDLKEINTQMSLGEQAAREAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKVNRISRQHLQETGTEPDAAVLAEKMEMPEDKVRKILKIAREPISMETPIGDDDDSHLGDFIEDSGTLAPTEAAMQAGLRDVVKEI
LDSLTPREAKVLRMRFGIEMANDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPTRSDKLRSFLD-
>tr|A0A0A2N2U7|A0A0A2N2U7_ALCFA RNA polymerase sigma factor RpoD OS=Alcaligenes faecalis GN=rpoD PE=3 SV=1
-----------------QLSPEEQEARRNRLKALIKLGKDRGYLTYSEINDHLPDDLVDVEAIDGIIGTFSDMGISVYDQAPDADTLMSDNAPMASSD-D
DVEDEAEAA---------L--TTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAIAACPTTVNEILAYVQRVREGVMQIDEVVD
GLVDD-DGEEYAGSGVT----------------ADD--EDEGPAGGMSSKQIEYLRNKSLKKFDIIGEWFDKMRVSFES-----------EGYKSAGYVQ
AQETILNEFMGIRFTAKMVEKLADTMREQVAIVRQHEREILNCVDRADMPRAHFIKAFPGNETNLDWVVQEVA-AGHPYSSILERHIPAIQEVQQKLIDL
QTSVVLPLKDLKEVNKRMTTGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRINRQILQETGVEPDPATLAQKMDMPEDKVRKILKIAKEPISMETPIGDDDDSHLGDFIEDNNTVSPSDSALHGSMRDVVKDV
LDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLE-
>tr|F4GUU3|F4GUU3_PUSST RNA polymerase sigma factor RpoD OS=Pusillimonas sp. (strain T7-7) GN=rpoD PE=3 SV=1
-----------------QMTPEEQEARRNRLKVLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGISVYDQAPDADALMSDNAPVASSD-D
DVEDEAEAA---------L--TTVDSDFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVMAIAACPTTVNEILQYIQRVRDGAAQIDEVVD
GLIDQ-EGEEYAGAGVS----------------VDNDENEDGPAGGMSSKQLEHLRTKSLKKFENISVWFSKMRTAFER-----------DGYQAQEYAE
AQEAILNELMGVRFTAKMVEKLADTLREQVAQVRKLERTVLHCVDRAGMPRAYFIKVFPGNETNLNWVLEEVA-AGHPYSETLERHIPAVQEIQQKLIDL
QTSVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRINRQILQETGAEPDPATLAQKMDMPEDKVRKILKIAKEPISMETPIGDDDDSHLGDFIEDTGTLSPSEWALHGSMRDVVKEV
LDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLE-
>tr|A0A095ZBY8|A0A095ZBY8_9BURK RNA polymerase sigma factor RpoD OS=Oligella urethralis DNF00040 GN=rpoD PE=3 SV=1
-----------------NASPEMLEERRSRLRQLIKLGKDRGYLTFSDINDTMSDDLVDTDAMDSIIGTFDEMGIKVYDQAPSAEDLLSDANP--ISDDD
DVEDEAEVA---------L--TTVDSDFGRTTDPVRMYMREMGQINLLDREGEIEIAKRIEDGLKHMVMAIATFPATIEEILNSITKVREGEAAIDDFVD
GLINEEGEDYAGSGVT-----------------A---EGEEAQTGAMSSKQIENLELQTLEKFDIIEQCYKKMQAEVDA-----------GNIRSKVYLE
EQAKMLDELVGIRFTAKMTESLCDLLRHKMESVRALERSILAVVDRVKMPRSDFISTFHGNETNLDWVHQVLA-KKPPYAEVLERAIPDIQDDQKKILEI
EDEMMMSVQELKEINRRMVNGENKAKKAKSEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRITRQILQETGAEPDPATIAQKMDITEDRVRKILKIAKEPISMETPIGDDDDSHLGDFIEDTTTMSPEEASTYKSMQEVFDEV
LNSLTEREGKVLRMRFGIGLSSDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLD-
>tr|A0A0Q8J5U3|A0A0Q8J5U3_9BURK Uncharacterized protein OS=Achromobacter sp. Root170 GN=ASD87_22170 PE=4 SV=1
-------------------MKPSAAEDLEPLRIFLLQGLRDGSVSSQAFSNVIPSEE--VASETRLRNLLGDLGIIISDDLPGWSESRI----SD-EWND
DMETLADEA---------V--SFWTQLSRQDNEPVWLFLKEASAFELLTAEAEISIAKRIEEGTRNSVSAIAACPATIDEILASMRAVRNGSVSIDQVID
GFNDDDNEDSDEAEPEL-------------------YDS----DHAAAGKLTEQLRLKSLAKFAVIESWHLRMSDAFESQ-----------GP--EAYLE
AREAIQAELMNVRFTPGMVERMTDTLRSCLAELRTHEQAAMSCVERVGMPREHFAKSFRVNATNLDWAPQEVAAGG-DYVEALGRHVEAIQETQQHLIEL
QRRLALPLIRLKDISQRMTAGEATVRKAKHEMTVANLRLVFSIAKKYFNRGMDISDLVQEGCLGLMKAVDKFDYRRGFRFSTYATWWIRQAITRSIADQG
STIRIPVHMVETINKMDKARRELSNATGFEPNITELADKMEISREAASKIAKVIRRPVSLEEFADDAQQQSFDCHIHGSTLASPEELVSEREMKDIVREV
LDALPPREAKVLCLRFGIGWGADMTLEQVGAQFDLTRERIRQIEATALRKLRHPGRKAKLTGLLE-
>tr|A0A059KRF3|A0A059KRF3_9BURK RNA polymerase sigma factor RpoD OS=Sphaerotilus natans subsp. natans DSM 6575 GN=rpoD PE=3 SV=1
-----------------TLTEEEVAKRRQELKTLIKMGKTRGYLTHQEINDHLPEKLVENEILEAIISMLNDMGIAVYEQAPDAATLIAGGNTT-TATEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLQAMMLAISASPATIDEILAMAGRIRAGEMTISEVVD
GFVSSEEADDYVAEEDFD---E-------F---DED-EEEGAGTSKALTKKLEEMKNQALTRFDAIRDENAKMRAAIES-----------KGYRCDAYNA
AQEAISAQLMTIRFTVKTIERLCDLLRSQVDDVRRYERELRKVVDRCGMPQEHFIKVFPPNMLNLAWAEGEVA-IGKGYSAVLGRNLPAVQELQQKLIDL
QKRAIVPIDDLKAINKRMNEGEANSREAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRLSRQHLQEFGYEPDAPVLAEKMDMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNNTAPIEAAMQSGLRDVVRDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSRSDKLRTYLD-
>tr|A0A0K8P5M5|A0A0K8P5M5_9BURK RNA polymerase sigma factor RpoD OS=Ideonella sp. 201-F6 GN=rpoD PE=3 SV=1
-----------------TLTEEESARRRAELKALITLGKTRGYLTQQEVHDHLPDRL--AEVIEATIRLLGDMGIGVYEQAPDDATLVAGGSTGG-SSDE
EAEEAAESA---------L--SSVDSEFGRTTDPVRMYMRDMGAFDLLTREGEIEIAKRIEAGRQAALLAASEVPAVVAAALELADAIARGETEISEVVD
GFVLADEADDY-----V---------------AFDDEDEGADGAAPALSRRQSELKAEALQRFAELREAFAALRAAFEAK-----------GV--PAYRA
AQQRVSQHLGGFRFTIKVGDRLAEVVRQLVEDVRRCEREVRKCVERCGMPQAHFIASFPARSLDLAWGEAEA-ANR-RWGAVLRRQLPAIQAQQRRLAEL
QARAVVSLDMLKATERRLLAGERQTLDAKREMIEANLRLVISIAKKYNNRGMQFLDLIQEGNVGLMKAVEKFEYRRGFKFSTYATWWIRQAITRAIAEQA
RTIRVPVHMIESMNKINRVARVHLQQHGVEPDAAMIAAELSMPEAKVRQIMSIAKEPISMEMPLGEDGEATIGDMIEDTQRTAPLQAAMQANLRSAIGEL
LEGLSVREAQVLRMRYGIDMASDHTVEEVGKQLDMTRERIRQIEAKAMLKLRHPSRADRIRTFAD-
>tr|A0A0Q7A834|A0A0Q7A834_9BURK RNA polymerase subunit sigma OS=Rhizobacter sp. Root404 GN=ASC76_17360 PE=4 SV=1
-----------------ALTEEEATKRRQELKTLIKMGKTRGFLTHQEINDHLPEKLVDNEILEAIVSMLNDMGIAVYEQAPDAATLIAGGGTT-TATEE
EAEEAAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLQAMMYAISASPTTIAEILSYADRIRAGDMKISEAVD
GFVSEDEADDYVAEEDVD---F-------F---DEEDDDDGQGGSKALTKKLEELKTAALVKFETLGVNFDKMRKAFEK-----------DGYQSPAYNK
AQQAISSELMTIRFTVKTIEKLCGILRSQVDDVRRYERELRKLVDKCGMPQEYFIKHFPPNILNLKWAEKEVA-SGKPYSAILARNLPPVQELQKKLTDQ
QARAVVPLDDLKRINKRMNEGEKASRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRLSRQHLQEFGFEPDAPTLAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNNTAPIEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSRSDKLRTYLD-
>tr|A0A0A0DLF6|A0A0A0DLF6_9BURK RNA polymerase sigma factor RpoD OS=Aquabacterium sp. NJ1 GN=rpoD PE=3 SV=1
-----------------TLTEDEVNKRRQDLKTLIKLGKTRGFLTHQEINDHLPEKLVENEILEAIISMLNDMGVAVYEQAPDAATLISNSAQS-TATEE
EAEEAAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLQAMMLAISASPTTIAEILSLSDKIRAGELPISDVVD
GFVAADEADDYVAEEDFD---E-------F---DEDEDDDGNGGSKALTKKLEEMKNQAMTKFDALRANFDKMAKSFEK-----------DGYKSNPYNK
AQEAISQELMTIRFTVKTIERLCDVLRSQVDDVRRYERELRKVVDKCGMAQEQFIKSFPPNILNLDWAVKESN-AGKNYSAVMGRSLPAIQELQQKLIDL
QAKAVVPIEDLKSINKRMNEGEKASRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDAPTLAAKMEMPEDKVRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNNTAPIEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSRSDKLRTYLD-
>tr|W7W5N1|W7W5N1_9BURK RNA polymerase sigma factor RpoD OS=Methylibium sp. T29 GN=rpoD PE=3 SV=1
-----------------ALTEDEVAKRRQELKTLIKMGKTRGFLTHQEINDHLPEKLIEAEILEAIVSMLNDMGIAVYEQAPDAATLIAGGSTA-TSTDE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLQAMMLAISESPTTIAEILVLADKIRAGEMQISEAVD
GFVSNEEADDYVAEEDFD---E-------F---DEEDDDDGNGGSKALTKKLEELKTQALVRFDELRTHFDRMRKAYEK-----------EGYKSPAYNR
AQMGVSSEIMSLRFTVKTIERLCQILRSQVDDIRRYERELRKVVDKCGMPQDHFIKTFPPNSLNLKWAEKEIA-ANKSYSAVMARNLPPIQDLQQKLIDL
QSRAVVPIDDLKLINKKMNQGEKASRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRLSRQHLQEFGFEPDAPTLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNNTAPIEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSRSDKLRTYLD-
>tr|B1Y6J1|B1Y6J1_LEPCP RNA polymerase sigma factor RpoD OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpoD PE=3 SV=1
-----------------MLTEEEVAKRRSELKTLIKMGKTRGFLTHQEINDHLPEKLVEAEILEAIVSMLNDMGIAVYEQAPDAATLIAGGGTT-TSTEE
EAEEAAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLQAMMLAISASPATIAEVLEMANKIRAGTDPISSVVD
GFVAADEADDYVAEEDFD---E-------F---DEEEDDDGNGGSKALTKKLEELKNQALVKFDALQLDFDKMRKAYDK-----------DGYKSPAYNK
AQEAISGQLMTVRFTVKTIEKLCDLLRSQVDDIRRFERELRKVVDRCGMPQEYFIKSFPPNILNLEWAENEIA-ANKPYSAVMSRNLPAIQELQQKLTDL
QTKAVVPIDDLKQINRRMNEGEASSREAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRLSRQHLQEFGFEPDAPSLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNNTAPIEAAMQSGLRDVVRDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAIRKLKHPSRSDKLRTYLD-
>tr|A0A0Q7L8T4|A0A0Q7L8T4_9BURK RNA polymerase subunit sigma OS=Variovorax sp. Root473 GN=ASD34_18810 PE=4 SV=1
-----------------VLSEEDLAKRRSRLKTLITLGKTRGYLTHGEISDHLPDKLVDAETMEVVVTMLNDMGVAVYEQTPDAETLLNNTAPT-ATTVE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMAMMEAISASPATIAAILEMAATIREGKVVISTIVD
GFSNPNEADDYVAEEDFD---E-------F---DEEDDDDGKGGSKALTKKLEELKNEALSRFDRIAEMFEKIHKIYEK-----------EGYGTPAYTK
AQQAVSDELMTIRFTAKTIEKLCDLVRTQVDDVRKKERELRRIVDKCGFPQDEFIRDFPSNLLNLKWIEKQAA-AGKSYSAVLARNIPPVQELQQKLTDI
QSRVVVPLTELKDINKRMNEGESSSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDAGILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSSNTAPIEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFID-
>tr|Q21Y63|Q21Y63_RHOFT RNA polymerase sigma factor RpoD OS=Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) GN=rpoD PE=3 SV=1
-----------------VLSEEDMAKRRQRLKALIKLGKTRGYLTHGEISDHLPDKLVDAETLEVVISMLNDMGVAVYEQTPDAETLLNNNVST-AATEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMAMMEAISASPATIAEILRLSEDIREGKVVITTIVD
GFSNPNEADDYVAEEDFD---E-------F---DAADDDDGKGGSKALTKKLEELKNEALSRFDRLRELFEKIHTIYNK-----------EGYGTPSYIK
TQKALSEELMSIRFTAKTIEKLCDLVRSQVDDVRKKERELRRIVDKCGYPQENFIADFASQLLNLKWIEKQAA-SGKHWGPIMARNIPPVQDLQQKLTDL
QSKVVVPLDQLKDINKRMNEGEYSSRAAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDASVLAERMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDAANTAPMEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFTD-
>tr|A0A016XKB6|A0A016XKB6_9BURK RNA polymerase sigma factor RpoD OS=Hylemonella gracilis str. Niagara R GN=rpoD PE=3 SV=1
-----------------VLSEEDLAKRRERLKLLIKLGKTRGYLTHGEISDHLPDKLADAETLEVVVAMLSDMGVTVFEQTPDAETLINNTAPT-AASEE
EAEEEAEAA---------V--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISASPTTIAALLGMAEEIREGKVVISTVVD
GFVNAEESDDYVAEEDFD---E-------Y---DEADDDDGKGGSKALTKKLEELKNQALERFDRIRSLFEKVHKAYDK-----------EGYGTPAYVK
AQKALSDELMTIRFTAKTIEKLCDLVREQVADVRHKERELRRIVDRCGYPQEQFVLEFKSHLLDLKWVEKQAS-AGKPWSGIMSRNVPPIQDIQQKLIDL
QARVVVPLEQLKDINKRMNQGEAASRAAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDASLLAQKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTANTAPVEAAMQAGLREVVKEI
LDGLTPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFTD-
>tr|A1WJK1|A1WJK1_VEREI RNA polymerase sigma factor RpoD OS=Verminephrobacter eiseniae (strain EF01-2) GN=rpoD PE=3 SV=1
-----------------VLSEEDLARRRSRLKTLIKLGKTRGYLTHVEISDHLPDKLVDAETLEAVITTLNDLGVAVYEQTPDAEALITDNAPT-GASEE
EAEEAAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMAMMEAISASPATIAEILNMGEEIRAGKVVISTIVD
GFSNPNEADDYVAEEDFD---E-------F---DEADDDDGKGGSKALTKKLEELKKQALERFDKLRDLFEKMHKVYDK-----------DGYGTLAYVQ
AQQALSAELMTIRFTAKTIEKLCDMVRGQVDDVRRKERELRRIVDKCGMPQETFIKDFPPNLLNLQWVEKQAA-MGKPWSSIIARNIPPIQDLQQKLMDL
QSRVVVPLTELKVINKRMNEGEATSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDASLLAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDASNTAPIEAAMQAGLRDVVKDI
LDGLTPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFID-
>tr|F4GCJ4|F4GCJ4_ALIDK RNA polymerase sigma factor RpoD OS=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) GN=rpoD PE=3 SV=1
-----------------VLSEEDMAKRRSQLKKLITLGKTRGYLTQVEISDHLPDKLVDAETMEVVVAMLGDMGVAVYEQTPDAETLQNNVAPT-ATTVE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISASPATIAEILNMGEEIREGKVVISTVVD
GFSNPEEADDYVAEEDFD---E-------Y---DEEDDDDGKGGSKAMTRLLEKLKTEALDRFDELRSLFEKMHKIYDK-----------EGYGSPAYMK
VQHEISAKLMTIRFTAKTIEKLCDMVRAQVDDVRKKERELRRIVDKCGMPQETFIKEFPPNLLNLQWVEKQAA-AGKPWSAVMQRNIPPIQELQQHLIDL
QSRVVVPLAELKAINKRMNQGEANSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSNNTAPIDAAMQAGLRDVVKDI
LDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFID-
>tr|A0A060NKP4|A0A060NKP4_9BURK RNA polymerase sigma factor RpoD OS=Comamonadaceae bacterium B1 GN=rpoD PE=3 SV=1
-----------------ILTEEEAKARRDHLKALIKLGKTRGYLTHGEINDHLPDKLAEAETLEVVVSLLNDMGVAVYEQTPDAETLLSNAGPT-SATEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLNEMMAAISQSPATINEILNMAEEVRAGAVVISTFVD
GFSDADEADDYVAEEDFD---D-------Y---DEASDDDGKGGSKAVSRKMEELKREALARFDALRELFEQLHSSYDQ-----------HGYASPAYQQ
AQAQLTAKLMTIRFTAKAIEKLCDTVRQQVESVRKKERELRRIVDKCRMPQDKFVADFPPNLLNRQWVEKQAA-AGKPWSASMGRHIPPIQELQQQLIDL
QTSVVVPLEQLKAIHKRMNDGERMSRNAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRLSRQHLQEHGFEPDASMLAEKMEIPEEKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSANTAPIDAAMQAGLREVVKEI
LDSLTPREAKVLRMRYGIEMSTDHTLEEVGKQFDVTRERIRQIENKAVRKLKHPSRSDKLRSFMD-
>tr|W7WU33|W7WU33_9BURK RNA polymerase sigma factor RpoD OS=Hydrogenophaga sp. T4 GN=rpoD PE=3 SV=1
-----------------VLSEEEAKNRRERLKTLIKLGKTRGYLTHGEINDHLPDKLVEAETLEVVVSLLNDMGVAVYEQTPDAETLLNNTGPT-AATEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLNDMMAAISESPATIADILAMAEDIREGKVVISTVVD
GFADADAADDYVAEEDFD---D-------Y---DEADDDDGKGGSKALTRKLEELKREALTRFDTLRTLFEKLHKTYDK-----------EGYGTPTYLK
TQLAITETLMSIRFTAKAIEKLCSTMRSQVDEVRKKERELRRIVDKCGMPQDKFIADFPANLLNLKWVEKQAA-AGKPWSVIMQRNIPPVQELQTGLMNI
QSSVVVPLAHLKDIHKRMNSGESTSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEHGFEPDASILAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDQANTAPIEAAMQAGLRDVVKEI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLKHPSRSDKLRSFID-
>tr|J3D3H3|J3D3H3_9BURK RNA polymerase sigma factor RpoD OS=Polaromonas sp. CF318 GN=rpoD PE=3 SV=1
-----------------VLSEEDMLKRRLRLKTLIKLGKTRGYLTHGEISDHLPDKLVDAETLEVVVNMLNDMGVAVYEQAPDAETLLNNTGPT-VATEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMKMMEAISESPATIAEIMRLGEEIREGKIVISTVVD
GFSNPNEADDYVAEEDFD---E-------F---DEEDDDDGKGGSKALTKKLEELKKEALSRFDKIAALFEKVHKTYDK-----------EGYGTPTYVK
AQKALSDELMTVRFTAKTIEKLCDMLRGQVLDVRKKERELRRIVEKCGMPQEVFIKDFPPNLLNLKWVEKQVA-AGKPWSVVMARNVPPIQELQTKLAEL
QARVVVPLAQLKDINKRMNEGESNSRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRLSRQHLQEFGFEPDASILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSANTAPLEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFID-
>tr|V5AE92|V5AE92_9PROT RNA polymerase sigma factor RpoD OS=Betaproteobacteria bacterium MOLA814 GN=rpoD PE=3 SV=1
-----------------DLSEEETLSRRANLKALIKMGKTAGYLTHGEINDHLPDKLVNQETLEVVVSLLSDMGVSVYEQTPDAETLLNNTTGT-AATEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEQGLTDMVESISESPATIAAIFAMVEEIREGKVVISAVVD
GFADANENDDYVAEEDFD---E------------EYDDDDGKGGSKSLTKLLEKLKNEAITRFDNMREQFEKLHKAYDK-----------EGWGSPAYLK
AQKAITEQLMTIRFTAKTIDKLSNMVRDQIDTVRTKERMLRRLVDKCGLPQERFIKDFPANLLNTKWIEKEVA-AGKPWSVIMERNIPPVQELQTDLSTI
QASVVVPLHQLKSIHKRMIQGEINSRGAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRLSRQHLQEFGFEPDASVLAEKMEIPEEKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTANTAPLEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIESKAVRKLKHPSRSDKLRSFMD-
>tr|D8DD41|D8DD41_COMTE RNA polymerase sigma factor RpoD OS=Comamonas testosteroni S44 GN=rpoD PE=3 SV=1
-----------------VLTEEEMNTRRQRLKMLIKLGKTRGYLTHAEINDHLPDKLVDAETLEVVISMLNDMGVAVYEQTPDAETLLNNTGQS-ATTEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISASPATIAEILNMAEEIREGKVVISTVVD
GFVNANENDDYVAEEDFD---E-------Y---DEEDDDDGKGGSKALTKKLEELKNEALGRFDSMRELFDKMHKVYDK-----------EGYGTEAYMK
VQKAITEELMTIRFTAKTIEKLCDLVRAQVDDVRKKERELRKIVDKCGMPQEQFIKDFPPNLLNLDWVIKQVA-AGKNYSAVLERNIPPVQELQQNLIDL
QARVVVPLEELKHINKRMNSGERASRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGNNTAPIDAAMQAGLRDVVKDI
LDGLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFID-
>tr|A0A0N7J9T9|A0A0N7J9T9_9BURK RNA polymerase sigma factor RpoD OS=Limnohabitans sp. 103DPR2 GN=rpoD PE=4 SV=1
-----------------VLSEEDMAKRRQRLKALIKLGKTRGYLTHGEISDHLPDKLVDAETLEVVIATLNDLGVAVYEQTPDAETLITDNAPT-GSTEE
EAEEAAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMTAISASPATIAEILRLAGEIREGKVVISTVVD
GFSNINEADDYVAEEDFD---E-------F---DESDDDDGKGGSKALTKKLEELKNQALERFDRITELFEKVHKISAK-----------EGWGTPAYQK
AQKELSEELMTIRFTAKTIEKLCDMVRGHVDDVRKKERELRRIVDKCGYPQDQFIADFASHLLDLKWIEKQAA-AGKPWSAVMGRNIPPVQDIQQKLTDL
QTRVVVPLDELKDINKRMNAGERASRHAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDASILAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSANTAPIDAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFID-
>tr|A0A0K1NE85|A0A0K1NE85_9BURK RNA polymerase sigma factor RpoD OS=Ottowia sp. oral taxon 894 GN=rpoD PE=3 SV=1
-----------------VLSEEELNLRRANLKALLKLGKTRGYLTHGEINDHLPDKLVDPETLEAVVTMLNDLGVAVYEQTPDSETLLTNQGNN-TATEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMQAISASPSIIAEILQMAAEIREGKAVINTIVD
GFVDHDENDDYVAEEDFD---E-------Y---DD-DDDDGKGGSKAMTKLLEALKTQALERFDRIAQLYEKVLKAHSK-----------DGWGTPAYVK
AQEALSAELMTIRFTAKTIEKLSDMLRGQVDAVRRHERDLRRIVDKCGYPQEQFIAEFPSHLLDLRWCEKQAA-SNKPWSAVMGRNIPPIQDLQQKLIDL
QQLVVVPLDELKDIHKRMNQGEAASRFAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRFSRQHLQEHGFEPDAALLAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTSNTAPVDAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFMD-
>tr|K1KGK5|K1KGK5_9BURK RNA polymerase sigma factor RpoD OS=Sutterella wadsworthensis 2_1_59BFAA GN=rpoD PE=3 SV=1
-----------------SDEEDSTEDRRSKLFTLIRMGRERGYVTYGEINDNLPNSL--DDAIETVVAILSNLHIQVFESAPDEDTLMMGNESVA-SE-E
DADAEAEAA---------L--STVDSEFGRTTDPVRIYMREMGSVELLSREGEIEISKRIEDGLKHMVLAISRCPVTVAAIVGYAHEIREGTLPIDDIVD
GLVAADDTGNVLG----------------------NDDETDMGASAMTVDQLEDMKQRSLAIFAVVEEHFNTLKTVVREE-----------GY--DRLDP
LKDSIQRELMAVRFTAKTADKLCELLRTTIDEVRTRQKTIYNLVRRVGLDRTWFLATFADHATDLDWMSAIVRDNP-EKAAYLEHLRPTVEEEQRKLAEL
VSNACMTVPELFDTYKQMATGEAKARNAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINRMNRITRQILQETGVEPDSRELAKLMELPEDKILKIMKIAKEPISMETPIGDDDDSHLGDFLEDTQTVAPAEAIQNTSLSETVRQV
LDSLSPREAKVLRMRFGIEMQSDHTLEEVGKQFDVTRERIRQIETKALRKLRHPSRADKLRSFVE-
>tr|H3KGL7|H3KGL7_9BURK RNA polymerase sigma factor (Fragment) OS=Sutterella parvirubra YIT 11816 GN=HMPREF9440_01899 PE=3 SV=1
-----------------VE-EESQEDRRSKLLKLISMGKERGYVTYSEINDNIPNSL--DDAIETIVSILSNLNIEVHEVAPDEEQLMQGSGTPV-SE-E
DAEAEAEAA---------L--STVDSEFGRTTDPVRIYMREMGSVELLSREGEIEISKRIEDGLKHMVLAIARCPVTIEEVLKSAAAIREGTMSIDDVVD
GITSTDDVGSVIR----------------------ADDETDMGASAMTVGQLEELKRRSLEVFDRVDAKFKDLCERFREA----------SGYVKADQEA
LKDGIQQDLMGLRFTAKTADRLCETLRVTVGRLRASERIVYDLVRGAGIDRAWFMERFIDHATDVAWLDEVAAAFP-EKRAQILRRRAPIAEEQHKLAEL
EQTTFMTVHELLDAYKQMATGEAKARNAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINRMNRITRQELQETGVEPDSRRLAELMDMPEDKILKIMKIAKEPISMETPIGDDDDSHLGDFLEDTQTTAPAEAIQNSSLSETVKQV
LDSLSPREAKVLRMRFGIEMQSDHTL----------------------------------------
>tr|S3BL55|S3BL55_9BURK RNA polymerase sigma factor RpoD OS=Sutterella wadsworthensis HGA0223 GN=rpoD PE=3 SV=1
-----------------GAAEESTEDRRSKLIKLISLGKERGYVTYSEINDNIPNTLLDEDAIETIVNILGNLNIAVHEVAPDEEQLIQGGAE--GVSDE
DAEAEAEAA---------L--STVESEFGRTTDPVRIYMREMGSVELLSRQDEIEISKRIEDGLKHMVLAIARCPVTVHEILESAERIRSGETPIDEVVD
GIVTPDDQKNVVGAVED--------------------ET-DMGASAMTVGQLEDLKEKSLAVFDRVEAHFRSLVETFDG-----------KGPHAPELEG
LKDQIQRELMEIRFTAKTADRLCESLRRTIGIVRGSERTVYDYVRHLHLPREWFLANFISNATRIGWVDEVAA-AYPDKAQVILHMRATVEEEQRRLAQL
ERESHMTVAELLDTYKQMATGESKARNAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINRMNRITRQELQETGVEPDSRRLAELMEMPEDKILKIMKIAKEPISMETPIGDDDDSHLGDFLEDTQTVAPAEAVQNASLSDTVKQV
LDSLSPREAKVLRMRFGIEMQSDHTLEEVGKQFDVTRERIRQIETKALRKLRHPSRADKLKSFLD-
>tr|A0A0N1LBH8|A0A0N1LBH8_9PROT RNA polymerase sigma factor RpoD OS=beta proteobacterium AAP99 GN=rpoD PE=3 SV=1
---------------KHAGTPEDLETKRNKLKALIKLGKDRGYLTYAEVNDHLPDDAVDAEAIEAIISTFNDMGIAVYDQAPDETLLMSDNTP-VAGGDD
DAEEEAEAA---------L--QTVDSEFGRTTDPVRMYMREMGQVELLTREGEIEIAKRIEEGQKHMIMAISACPTTINEILGFAEKIRAGTDSPAAYVD
GLIDPNADDDFNPSA-EAF----------------GDEEDETEGGGLSAKQLEELKNGSLEKFDRISKHFDKMRKAFEV-----------EGYKSAAYNK
AQEAISSELMLIRFTAKTVERLCDTLRSQVEQVRSLERAILSIVDKCGMPREYFIKSFPGNETNLKWADKEVKS-GKNYVVILERNLPAVHELQQKLIDL
QSSVVVPLADLKEINKQMAMGEAKARKAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGIEPDPQTLAAKMDMPEDKIRKILKIAKEPISMETPIGDDEDSHLGDFIEDQATLAPAEAALHNSMHEVVKEV
LDSLTPREAKVLRMRFGVEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLE-
>tr|A0A0C5K1U4|A0A0C5K1U4_9BURK RNA polymerase sigma factor RpoD OS=Pandoraea vervacti GN=rpoD PE=3 SV=1
---------------HQPGTAEELEERRGKLRTLIKLGKERGFLTFAEINDHLPDDVVEGDALEGVIATFNDMGVAVYEQAPDETLLLNDNAP-NAATDD
EVEEQAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMVQAISACPTTIAEILAMAEKVEREEMRIDEVVD
GLIDPNAEANAAAAADEDFDADEE--EEE-EEEGDEEEDSGGSGGAASAAQVEQLKRDSLAKFAVIADWFGKMRRAFEK-----------EGYQSKPYVK
AGESIQAELMTIRFTARTVERLCDTLRSQVDEVRNIERAILNIVDKCGMPRADFVSRFPGNETNLDWIYTVVAD-NKAYSSVVERNVPAVQELQQKLIDL
QARVVLPLAELKDVNRKMSEGERRARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGVEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTGTVAPADAALHGSMRDVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|A0A0G3EY08|A0A0G3EY08_9BURK RNA polymerase sigma factor RpoD OS=Pandoraea thiooxydans GN=rpoD PE=3 SV=1
---------------HQPGTAEELEERRTKLKALIKLGKERGFLTYAEINDHLPDDLVETEALEGVIGTFNDMGIAVYEQAPDETLLLNDNAP-AATSDD
EVEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMVQAISTCPTTIAEILAQADRVANEEIRIDEFVD
GLIDPNAEENALAAAEEEFEADET--E------EADDEDDGDGGASANAAQLEQLKRDSLEKFQSIADWFQKMRRAFEK-----------EGYQSKPYMK
AREAIQTELMSIRFTARTVERLCDTLRSQVDEVRKIERAILHIVDKCGMPRADFVSRFPGNETDLNWVHSVVAD-GKPYSAIVERNVPAVQELQQKLIDL
QARVVLPLPELKDVNRKMSEGERRARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTGTVAPADAALHGSMRDVVKDV
LDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|A0A0D5ARV1|A0A0D5ARV1_9RALS RNA polymerase sigma factor RpoD OS=Ralstonia mannitolilytica GN=rpoD PE=3 SV=1
---------------QQGGSEEELEARRQKLKALIKLGKSRGYLTYAEINDHLPDDMVDVESMETLVATLNDIGVAVYEQAPDETLLLNDNAP-SVTTEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTISEILAMGERVANDEAKIDEFID
GLIDPNAEAEAAAAADEDFEDEEA--EEE-GDEEEDEDDDGAGASAASARQLEELKQAALEKFRIIADQFDKMRRAFEK-----------EGYKSKPYLK
AQEAIQNELMTIRFTARNVERLCDTLRGQVDEVRKLERAILNIVDKCGMPRADFVARFPGNETNLDWIQSVVAD-GKPYSAIVERNVPAVHELQQKLIDL
QARVVLPLAELKDVNRKMSEGERRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGQEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAALHGSMRGVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|A0A0C4YBV8|A0A0C4YBV8_9BURK RNA polymerase sigma factor RpoD OS=Cupriavidus basilensis GN=rpoD PE=3 SV=1
---------------TQQGTEEELEVRRQKLKALIKLGKSRGYLTYAEINDHLPDDMVDSETIDTLVATLNDIGIAVYEQAPDETLLLNDNAP-SATSEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTISEILALAERVASDEIKIDEFVD
GLIDPNAADVPVAPPVAA---A-L--ESD-GEESDEDEDEDAGGLAASARQLEELKLAALEKFRVIAEQFDKMRRSFEK-----------EGYKSKSYVK
AQEAILNELMSIRFTARNVERLCDTLRGQVDEVRKLERSILKIVDKCGMPRADFVARFPGNETNLEWIDTIIKD-GKPYSTIVERNVPAVRELQQKLIDL
QMRVVLPLKELKEVNRKMSEGEKRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAALHGSMRDVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|I9W257|I9W257_9RALS RNA polymerase sigma factor RpoD OS=Ralstonia sp. PBA GN=rpoD PE=3 SV=1
---------------TQPGTEEELELRRQKLKAVIKLGKSRGYLTYAEINDHLPDDMVEADALDTLVATLNDIGIAVYEQAPDETLLLNDNAP-NVTTEE
EAEEEAEAA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTIAEILAIADRVANDEIKIDEFVD
GLIDPNAEEAGDIDFTAA---AQD--EDS-DEESDEDESDEAAAAGASARQLEELKQASLEKFRIIADQFDKMRRAFEK-----------EGYKSKPYVK
AQEAIQAELMTVRFTARNVERLCDTLRGQVDEVRKLERAILNIVDKCGFPRSDFVARFPGNETNLDWIQTLVAD-NKPYSEIIERNVPAVQELQQKLIDL
QARVVLPLPELKQVNRKMSEGEKRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAALRDSMRHVMKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLE-
>tr|A0A087NYK8|A0A087NYK8_BURPY RNA polymerase sigma factor OS=Burkholderia pyrrocinia GN=JM78_11960 PE=3 SV=1
-------------------HRGADAERAAHLHALIALGIDRGYVTRGEIVDALPDEAAEDADFDAAASMLGELGIEMREHVDSRSAWTLDRHFARATAAT
SPLAEASPP---------L--ATADLLAGRTNDPVRIYLREMGATPLLEREEEITLALQLESGRAACIAAMSRDPAALSVIASIAADIRAGKAAASVYVT
GFVRDSDTHAEMPA-----DSP------ASDAPDPDFDSSPLDDESDQSADDTASRDAVAESLDRAAALASRMSETLRT-----------AGFASAGYRS
LMREAAELTGGIRFTARAIERIGSVIRERATQARRLEKRITATLAEAGIVNAPHHGLFEPCDDVRAWLDACTTAHPGC-GTALARHAPVLLEARTALAQL
AGQPGLPLDIAIAIDARLSRIDRAMQPARKKLFQSNLRLVVSIAKRYPDRGLQFLDLIQEGNIGLMKAVERYDHRRGFKFGTYATWWVRQAITHAIADQG
RTIRVPAHTVDAINKLSRLARTHRQRTGGVADAPALAAQLQVPVGKVRDLMSIVREPVSADTPVSPDHDLTLCDVVIDHDAPTPEEAASAGQLRAAVATL
IDNLPAREAWILRLRYGIDVESEYSLREIGRQLNLSAERVRQIEAAALERIRQFRHAPALRSLIA-
>tr|A0A071MK09|A0A071MK09_9BURK RNA polymerase sigma factor OS=Burkholderia cenocepacia GN=DT99_02650 PE=3 SV=1
-------------------RRGTDAEYAVRLHALIALGIDRGYVTRGEIADASPGDAADGPDFDAAASILRELGIDVREHADARTAWTLDRHFARVSEVA
APLADASTP---------L--AADDLPAGRTNDPIRLYLRELSATPLLERDEEIALALRLENGRAACIGALSRDPAALAVIAAIADDIRAGKVAASVYVT
GFVGDAEPSARASTML-PGDPP------VSD------------DGAGLALDSPAWRDTIVDALERAAAPASAMQHALHA-----------NGFASAAYRA
LLRDAAASTGRIRFTSRAIERIAQANGLRATQARTVEKRLADTLAASGIRESARHDLFTRCDDVRAWLHACSAAHPGC-AAALARHAPALLEARSALARL
AAQSPLPLDIAIALDGRLSRIERAMQPARTKLFQSNLRLVVSVAKRYADRGLPFSDLIQEGNIGLMKAVDRYDHRRGFKFSTYATWWIRQAITHALAELG
RTIRVPAHTVDSLNKLSRLARLHRQRTGDVADARSLATQMRLPVDKVRELMSIVREPISADLPVSPDHDLTLGDVTIDADAPTPEEAASAGQLRTAVAAL
IDCLPVREAWILRLRYGIDVKSEYSLREIGRQLNLSAERVRQLEVSALERIRQFRHAPALRSLIA-
>tr|U1XR38|U1XR38_9BURK RNA polymerase sigma factor OS=Burkholderia cenocepacia BC7 GN=BURCENBC7_AP3127 PE=3 SV=1
-------------------CRGAHADRAAHLHALIALGIDRGYVTHGEIADALPDDAADGADVDAAASMLRELGIDVREHAGAHTAWTLDRHFAQVTEVA
SPLADASTP---------L--AADDLLAGRTNDPIRLYLREMSATPLLERDEEIALALRLESGRAACIDALSRDPAALAAVAAIANDIRAGKVAASVYVT
GFAGDAESAASVPTTL-PDDPP------APD------------DDAGLALDSPAWRDTVVEALERAGAPASAMQHALHA-----------DGFASTAYRA
LLREAAASTGRIRFTSRAIERIRQANGERATQARTLEKRLVDTLVATGIPDAARHELFAPCDDVRAWLHTCSAAHPDC-AATLARHAPALIDARGALARL
AAQSPLPLDITIALDARLSRIERAMQPARTKLFQSNLRLVVSVAKRYADRGLPFADLIQEGNIGLMKAVDRYDHRRGFKFSTYATWWIRQAITHALADLG
RTIRVPAHTVDSLNKLSRLARIHRQRTGDVADARALSPQMRLPVDKVRELMSIVREPISADLPVSPDHDLTLCDVTIDADAPTPEEAASAGQLRAAVAEL
IDSLPVREAWILRLRYGIDVDNEYSLREIGRQLNLSAERVRQLEVSALERIRQFRHAPALRSLLA-
>tr|A0A0J5VCV0|A0A0J5VCV0_BURL3 RNA polymerase sigma factor OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194 / 383) GN=VL00_30700 PE=3
-------------------RGGTNAERTDRLNALVALGIGRGYVTRGEIVDALPDDAADGTDFDAAASMLGEWGIEVREHVDSRSAWTLDRHFARAADTT
SPLADASAP---------L--ATADLLAARTSDPVRIYLREMSATPLLDREEEIALALHLESGRAACIDALSRDPAALDAVASIAGDIRAGKVAASVYVT
GFVGDAESLDEARATL-PGESP------ANAAPDSTVAPPEGDDDTDRAPDSPAWRDSVVASLDRAGALAAGMQHALRT-----------GGFASAGYRA
LLREAVASTGRIRFTARAIERIGHAIRDRATQARKFEKRIVDILAESGIRDSPRRDLFMPCDDVRAWMTDCIAAHADR-AAALTRRAPALIEARTALAGL
ARESSLPLDIAIAIDARLSRIERAMQPARTKLFQSNLRLVVSIAKRYPDRGLQFLDLIQEGNLGLMKAVDRYDHRRGFKFATYATWWVRQAITHAIADQG
RTIRVPAHTVDAINKLSRLARTHAQRTGEVAGAPTLSAQMRIPVDKVRDLMDIVREPISADLPVSPDHDLTLCDVAIDHAAPTPEESASARQLRAAVAAL
IDRLPAREAWILRLRYGIDVESEYSLREIGRQLNLSAERVRQIEVSALERIRQFGHAPALRSLIA-
>tr|A0A0G3YKC0|A0A0G3YKC0_9BURK RNA polymerase sigma factor OS=Burkholderia contaminans GN=NL30_00610 PE=3 SV=1
-------------------RRATDAEHAAHLHALIALGIDRGYVTHGEIADALPDDAAERTDVDAAAATLRALGIEVRAHAGSRTAWTLDRHFAQAPEVT
LRLADASAP---------L--APDDLLAGRTNDPVRLYLRDMSATPLLERHEEIALALHLESGRAACIDALSRDPDALAGLAAIADDIRAGKVAASVYVT
GFAGDAEWLTQAPVMP-PDDSP------GNDAPDPAME----SGDTGRSPDSPAWRDAVAESLERASALAPAMRHALHA-----------DGFASARYRA
LIREAAAVTGRIRFTSRAIERIGHANVERATRARQVEKRLVDTLAASGIRGSTRCDRFAPCDDAHAWLRACIAAHPEC-AAALARHTPALIDARIALARL
AGQSPLPLTIAVALDARLSRIERAMQPARTKLFRSNLRLVVSIAKRYPDRGLPFLDLIQEGNIGLLKAVDRYDHRRGFKFSTYATWWVRQAITHALADQG
RTIRVPAHTVDALNKLSRLALTHRQRTGDVADAPALSAQMQLPVDKVRELMRVVREPVSADSPVSPDHDLTLCDVTIDPDAPNPEDAASAGQLRSAVAAL
IDSLPAREAWILRLRYGIDVDSEYSLREIGRQLNLSAERVRQIEVAALERIRQFGHAPALRSLLA-
>tr|J4RVD3|J4RVD3_9BURK RNA polymerase sigma factor OS=Burkholderia multivorans CF2 GN=BURMUCF2_B0431 PE=3 SV=1
-------------------HDDTLASASTRFAGLIALGLSRGFVTRSDVIDALPDDDAHDAGIDAATAVLAELCIAVSDDAHAETGWSLDRYFRPAPL-S
RAAAERNGA---------L--AAFELLVPRTTDPVRLYLREMGTVPLLTHDEEIAYAQRIERGRAASVAVLCGDPEALDALASIRREIAEGRAAASAYLM
FVDAGGHADAAAALD---P----------------HGQ------HDDMQPGELHVCDAALARLSSLDALARDMRAALTS-----------GGTASPAYRA
AVRDAAALLRPLRLSARAVERIGAPLRGRARRHREQHARMTRVLRHAGIPQTTWRYHDAHDDDHARWLAAGIAAHPEC-EPALKRSAPALFEARDALASE
ARASVLPPRTVALLDARLDAIERATRAAKTALFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIDRYDHRRGCRFSTYATWWIRQSITHALADLG
RTIRVPTHTVDAINKLARLAREHRQRAGATATPDELAAQMGEPVDKVRDLMAIVKEPVSADLPIAPDGDMTFVDVVPDASTPSPEDAADAAQRRAAIAAA
IDRLPPREALIVRLRYGLHAGEGCSLRDIGRRLNLSAERVRQIEASALARLRASDALAVLRPFVG-
>tr|A4JT57|A4JT57_BURVG RNA polymerase sigma factor OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=Bcep1808_6565 PE=3 SV=1
-------------------HDGDAPPHAAHLHALISTGLTRGFVTHGDIIDALPDDDAHQGGVDATAAMLRELGIAVSDGAH-AAGWTLDRYFQPTPS-A
RAWAEGAGA---------L--AAAELSAPRTTDPVRLYLREMGMTPLLTRDEEIMHAQRIERGRAASVAVLCGDPQALDALVAMRIEIAEGRTAASAYVL
SIADISDMAPAGGAAA--AS-----------TPADAGTRDD-----DAPADDGLCRHTVLARLAPIDALTAAMRAALET-----------DGAHGLAYRA
CVREAAALLGTLRMSMRALERMSEPLRTHARRQRTLHGRLARTLAEAGVPGAAAACV-QRDGDHARWLASCIAAHPEC-EPALTRRAAELVDARDAIARA
ARTSPLPPDTIALLDARLDTIERAMQPARMGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIDRYDHRRGFRFSTYATWWIRQAITHALADLG
RTIRVPTHTVDAINKLTRIAREHRQRSGAAATPHELAVQMGEPLDKVRDLMSIVKEPMSADAPVSPEGEMTFVDVAPDVSTPSPEDAAGAAQLRDTIAAM
IGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRASDGLDVLRAFIA-
>tr|D0LP36|D0LP36_HALO1 RNA polymerase sigma factor RpoD OS=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) GN=rpoD PE=3 SV=1
-------------------AKGRGTSSETLKKKLIELGRSKGFVTYDEVNDHMPEDVIS-EQIDSWLSALGEEGIDIVDSAASARKKAPADDDDSSG--D
ELEKEEE--------------EEDYS-YSRTSDPVRMYLRKMGSVSLLTREGEVEIAKRIEEGERRMLAAVLNSSVAVEELIDLGKQLADGKARAKEIIK
DIDEEDS-----------------------------------------DEQWH--IAKVRGRATDNEGIREKLADR-T-LGE------VKKKKYRDSIQA
NKEAMFEDLSELQLNKSVVDRMVANLKAIIVKLDRAETEIRAVENRLGMPAK-EIRKTLRDMKASTKTRS---VGFALTVDDFDAFEAAIKNAQKKIKVL
EEECRSSVEELRQTFREMSDGERMAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLVRTSRYLVQELGREPTPEEIAERMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSVTSPSDAVISVNLAEQTRKV
LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLKAFVE-
>tr|K1XAN1|K1XAN1_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
---------------------MGKEIESDEFKKLLTLGEEKGFLTYDDVNDLLPSDVVS-DQIDDIIMLFGEKNIDIIDSDKGE---K--LIVKKAPDDR
-E-I-KGEG---------L--MNLLPALGKTGDPVKMYLREMGMVSLLSREGEVEIAKKIEEGARESMEAVFSVVSSIRDVINIGVEIKNETLRVKNVVG
NLEDEDGVVEE--DM---H------------------------------------IDKITLLEGKNALIRKKL--NAKGLGA------EERLALKGAYEK
NIANIVKLSRKVRFGRKQIDRMVANLRVYLNHVEKAEEDIRRCKAEIGLSLAQLEGAFSKMKK--AKAPE---VAMRVPLTKLLSCEQIVKEANRSFKKI
TQDTGLSVTALKKAMIAIETGERKAEIAKRKLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPNPEEIANKMEFPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKIMSPSEATISMDLAEQTRKI
LATLTPREEKVLRMRFGISERGDYSAEESRESLEMSRERAKQIE-ASVRKLRNPSRRRILRTLDK-
>tr|A0A0Q0W3V3|A0A0Q0W3V3_9DELT RNA polymerase subunit sigma-70 OS=Smithella sp. SDB GN=APR62_04780 PE=4 SV=1
---------------------MAKEVQSDEVNKLILLGEEKGFLTYDDVNDTLLSDVTS-EQIDDIIMLFGEKNIDIIDTEQGE---K--LTVKKPDKDM
GT-A-NFKE---------M--LALVSSADKTGDPVKMYLREMGSVSLLSREGEVEIAKRIEEGARETMSAIFRLPVSINEVFNIGEKLISGEIKSKHVVD
NIEDEEGFMEE--DE---H------------------------------------IGRIKKFNDENNVLRTKF--KSGTLST------KKRELFKAEFEK
NSKNIVTLCRKIRFSKKQIHRFIDRLRNYADEIEAAEKVTAQYKKETKKTAV----------K--KKDKR---VAEIVQAKPSKKNDAAIKDAQKKIRQI
EKEVGISATALKTIIKTIEEGERKSEIAQRTLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIANKMEYPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKIISPSEATINIDLAEQTRKI
LKTLTSREEKVLRMRFGISDRINSLVGEDRAVPDLMETLTEVPEVHELKKAKEKTKKRFAK-----
>tr|Q2LVE8|Q2LVE8_SYNAS RNA polymerase sigma factor RpoD OS=Syntrophus aciditrophicus (strain SB) GN=rpoD PE=3 SV=1
---------------------MGKNIQSEEFKKLISLGEEKGFLTYDDVNDFLPSDITS-DQIDDIIMLFGEKNIDIIDTEKGE---K--LLVKSPVEER
-T-A-KEGE---------L--IDMMSVAGKTGDPVKMYLREMGYVSLLSRDGEVEIAKIIEEGAQEAMGAVFGVTASVKEVVDIGNKLKSDEIRIKNVID
NLEDEDGYVEE--DS---Q------------------------------------LDKVAMLDGKNDQILQKL--RAKDLSE------DGRKALKIQMEK
NKKAIIKLCRKVRFGKKQIDKLVANIKRYLAELEKAEDEIQKCKEETGLSLTQIEKACSRLKK--PQDEA---ILYGITMEKLKSVEAMIREANRKLKNI
TKETGYSVTAFKKILFNIEHGEKKAEEAKRKLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPSPDEIANKMEYPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKIMSPSEATISMDLAEQTRKI
LSTLTPREEKVLRMRFGISERIEYGEEELEQGEEE-GEFPGPIE-GAYRKLRNPSRRRTVKQV---
>tr|A0A091B726|A0A091B726_9DELT RNA polymerase sigma factor RpoD OS=Smithella sp. F21 GN=rpoD PE=3 SV=1
---------------------MAKEIQSDEFKKLLSLGEEKGFLTYDDVNDMLPPDLNS-DQIDDIIMLFGEKNIDIIDMEQGE---K--LVVKKPVEDV
-P-S-KFPE---------A--LALVPGAGKTGDPVKMYLREMGLVSLLSREGEVEIAKKIEEGARETMWAIFSLTVSIAEVLSIGEKLESGEIRVKNVVD
NIEDEEGFMEE--DE---H------------------------------------IARIRLFNDRNKVLHEKL--KSKTMKP------KQRELLTAELAK
NTKNIITLCRKIRFSKKQMHRFIARLRFFTDEIERSERVVNYFKRESGLTLTQMEKAWSRMKK--KQDER---AAAKVSVDWLHKSQAAVTEAQKRIKHV
AREVGIPTATLKTVVYSIEDGEAKAEIAKRKLVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIANKMEYPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKIMSPSEATISMDLADQTRKI
LSTLTPREEKVLRMRFGISDRLGAAVSDETAPVEVPESDIEELEIETPKEGKSASRKRAGK-----
>tr|S5ZVE7|S5ZVE7_9SPIO RNA polymerase sigma factor RpoD OS=Treponema pedis str. T A4 GN=rpoD PE=3 SV=1
-------------------DL----EKNPAIIKLLEYAKRKRIIGLDDLSDLLPEDLTSEII-PDILDILEAAGIQVKADEIEESIKDDDDDTE----PQ
PEKED-TSK---------K--LVKTSREAGVDDPIKLYLQEIGKEILLTAEEEVVLSKSMEDGETIIKKVIKNSGILIPEFFGIFAKLDPA-----ESNK
PRKELSEEMAEKKRL----------------------------------------RQVYGDSLRHIYPEIKQYISLKKHYY--------D----------
--RETL-------ASRKKIFNSLKRISIESEEIEKISDRFLQAT-------EKVQDYQTKKERREIKSYSDLRLELSMSVNEVKDIYSQIQILARKIRRI
EYDFEAPVDDVIEMTSEIRKGQTMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVNRESRQLMQKLGREPNDDEIAMQLGWSVEKVKQVKNVAREPISLETPIGEEEDTLLGDLIEDKGVENPSNRTELTLLQEQLGSV
LASLPDREQEVLKMRFGIDGGYPLTLEEVGLYFDVTRERIRQIEAKGLRRLRHPKRSRKLKDYLD-
>tr|A0A0A0X0K6|A0A0A0X0K6_9SPIO RNA polymerase sigma factor RpoD OS=Treponema sp. OMZ 838 GN=rpoD PE=3 SV=1
-------------------DI----SEDPIVIKLIAHAKERKSLTWDELTDLLPEKMTSETVMDEIIDLLEQEQIQVVDDVSEEADD-----------EP
SKPEE-THK---------K--LLNNDREAVVDDPIKLYLRDIGKENLLTAEQEVILSKAMEDGENIIKNAIKNSGVLISEVQMIFAKISSS-----ENNK
PRKELSYEDAEKKRL----------------------------------------RQSYGEQLKPIYSDIKAYILLKKKLY--------D----------
--KETL-------KTRKKILNYLQKIEFQTEEIEKISDHFLEAA-------RKIREYRRRREKKQIRAYSDLRLELGMTANDIRDIYTHIQTLIRKVRKI
EYDFEAPTEDIIALAKEIRHGHAMLKKAKDKLINANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVTRESRQLMQKFGREPTDEEIAAQLGWNVERVKQVKNVAREPISLETPIGEEEDSSLGDFIEDKDVENPSNLTEYILLQEQLRGV
LSCLPLREQEVLKMRFGLDEGYALTLEEVGLYFNVTRERIRQIEAKALRRLRHPKQSCKLKDYLD-
>tr|A0A0F6MMA0|A0A0F6MMA0_TREDN RNA polymerase sigma factor RpoD OS=Treponema denticola OTK GN=rpoD PE=3 SV=1
-------------------DL----EKNPAIIKLLEYAKRKRTIGLGDLDDLLPEDLMSETI-PDILDILEGAGVQIKNEGISESNSESDSD------TP
P-RHE-TAK---------K--LVRTSHEAGVDDPIKLYLQEIGKEDLLTADEEVSLSKSMEDGEAIIKKVIKNSGILIPEFFVIFSKLDPA-----ESNK
PRKELSEEMAEKKRL----------------------------------------KQVYGDSLRNIYSEIKQYMSLKKHCY--------D----------
--RESL-------ALRKKMFNSLKRIHIESEEIEKISDRFIEAT-------EKVQDYQHKKERKEIKSYADLRLELNISANEVKDIYTQIQVLTRKIRKI
EYDFEATVDEVIDLTSEIKNGQRMLKNAKDKLINANLRLVVSIAKKYINRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVNRESRQLMQKLGREPNDDEIALQLGWSIEKVKQVKNVAREPISLETPIGEEEDTLLGDLIEDKGVENPSNRTELTLLQEQLEMV
LSSLPEREQEVLKMRFGIEGGYPLTLEEVGLYFDVTRERIRQIEAKGLRRLRHPKRSRKLKDYLD-
>tr|V6DGA2|V6DGA2_9DELT RNA polymerase sigma factor RpoD OS=Candidatus Babela massiliensis GN=rpoD PE=3 SV=1
-------------------DLDG--SNTEVV-DILLEKGRSGIITYEELLEFCDRNNLSS-ETNDIIKILEKENVELIMEEELENETEIGYEKEDNIA--
EDEDEDERD---------L--VREASESAHVSDGVKAYLRDIGKIPLLNKKTESIISLKIAEGKKESIEALSKFPFIHKEVVLLGEKLEKNSISLKEIIQ
FSEYDEEN-------------P------KYS-----------------EERDV-LLKNLIKNEEKIYQSYRGKLDSED-K--------------------
-KQEMLKKI-QEIRLS--------------N---KLIRKLARRIERS------INKINDKLTFIK--NEMLFK-MKSILQLEVQDLDRQIRANYKTARKL
EQELGL-P-DIFKYYNQLRRGQAKDKRAKDDLARANLRLVVNIAKKYVNRGLHFLDLIQEGNIGLMKAVEKFEFERGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLNKINKIKRVFIQEHGREPSYAELSKELNIDEKKIKNIIKISKEPISLETPVGDSEDAYIKDFIESENDFSPADTVANTDLKERVREV
LKTLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKALRKLRHPSRSKKLQTFFE-
>tr|A0A0G1B4X5|A0A0G1B4X5_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWE2_42_60 GN=sigA PE=3 SV=1
-------------------KKIR--LKPQIFEEILERARHGGAITYEEIITLGDENDFSD-EFEQLFKLFEKEHIELFVEGELTTAKRPHEEEPEEAI--
--DDLIEKE---------Q--EIHASETTQISDGVKCYLREIGIIPLLNKKTEKVIADRIAKSKHDSIDALSKFPCIHRDIITIGERLEKNTIPLKDVIQ
FSDFDQEN-------------P------RYE-----------------EEKTG-LIKDLVEHEVEIYRTYRSKLSDSK-Q--------------------
-KKKMLTAI-QQIKLS--------------N---KLIRSLGKKVEKY------IAKIREKNAHLS--ASGELA-LNKKLKARIEELKKQIKISDKLIYKI
EHEMGL-S-RAFELYDKFLIAQINDKNAKDDLARANLRLVVNIAKKYVNRGLHFLDLIQEGNIGLMKAVEKFEFERGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLNKINKIKRTYLQEFGKEPSHEELAKELNLDEKKIKNIIKISKEPISLETPVGDSDDAFIKDFIENENEVSPADTVAINDLKEHVREM
LKTLTPREEKVIKMRYGIDVAAGYTLEEIGKDFGVTRERVRQIEVKALRKLRHPSRSNKLKTFFD-
>tr|V2TS98|V2TS98_9GAMM RNA polymerase sigma factor RpoD OS=Acinetobacter nectaris CIP 110549 GN=rpoD PE=3 SV=1
--------------------MSDMNSPTSQVAALISRGKEQGYLTYAEVNDHLPDSITE-EQIEDIIQMLQDVGIPVHERAPETDDTVFG--ES-ADT--
-AEEEAAAV---------L--ASVESEPGRTTDPVRMYMREMGTVELLTREGEISIAKRIEEGIRDVLHAIAYWPNAVEVVLKEYEDYGNGERRLADILS
G---YLDPESDEEIPE-VLED--------------K-DED---DEDEEDSDDSEG--IARVRFTELQQSWATAKEIIAKHGR------ESKE-----AGV
SLQSLATVFMMFKFTPRLFEIISEMIRGTHDQIRQSEREIMRYARRGRMDRTQFRKSFPGRESSL-WLDEQLE-----VRGYLEKVRPDILAFQQKIADT
EKDLGLSVAEIKDISKRMTVGEAKAHRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVRVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDANITSPVDAATSEGLKEATRDV
LENLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLE-
>tr|G5Q7V0|G5Q7V0_SALMO RNA polymerase sigma factor RpoD OS=Salmonella enterica subsp. enterica serovar Montevideo str. S5-403 GN=rpoD PE=3 SV=1
-------------------YRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVD-DQIEDIIQMINDMGIQVMEEAPDADDLLLAENTT------
-AEEAAAQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLIT
G---FVDPNAEEEMAP-TAT------------SQED-DDE---DEDEED-DAADD--LAREKFAELRAQYVVTRDTIKAKGR------SHAA-----AQE
EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCEQCKMPKKNFITLFTGNETSE-WFNAAIA-----MSEKLHDVAEEVQRCLQKLRQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGEEPISMET----------PIDRRR-----------
------------------------------------------------------------------
>tr|F4ARN3|F4ARN3_GLAS4 RNA polymerase sigma factor RpoD OS=Glaciecola sp. (strain 4H-3-7+YE-5) GN=rpoD PE=3 SV=1
----------------------MVQSKQSQIKLLIAKGKEQGYLTFAEVNDHLPQDIVD-DQIEDIIRMINDMGIKVFENAPDSDELLMQET--------
-VAEAAAQA---------L--ATVESEIGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINQVQCSVAEYPEAITYLLDQWDMYEAEEIRLSDIIV
G---FVDPNEADN-IA--PTA-----------SEEELDGD---DS---DEDEEEE--EAREKFSELRVQYEKTRDVIASEGR------SHAK-----SRK
EIDELSEIFKEFRLVPKQFDRMVKNMRSMMDRIRVQERIVMKHCAAAKMPKKDFIKAFSGNETST-WLYELMA-----SVEELKVHQEELERSIGKMNAV
EEETGLIIADIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIVQPLDSATGGSLKNATQEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>sp|O24744|RPOD_SHEVD RNA polymerase sigma factor RpoD OS=Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) GN=rpoD PE=3 SV=1
----------------------MEHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVD-DQIEDIVQMINDMGIRVYEQAPDADEIMMTED--------
-AAEEAAAA---------L--ATVEAELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIYTVQASVAEYPPAIASILDQFDRYEAEEVRLSDIIS
G---FIDPNAADI-A---PTA-----------SQSERKDD---SKD--EDEEEEG--ESKERFTQLREVHENTLKIIADKGR------GHPE-----ATV
ALFEIGELFKEFRLMPKQFDRLVKNMRATMDKVRVQERLIMKLCEQAKMPKKNFVKGYTADESSI-WFDTELA-----SAEGLKMIEPDVRRCRFKLDII
EKETGLAIASIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESLRNATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD-
>tr|G2GXU8|G2GXU8_9ENTR RNA polymerase sigma factor RpoD OS=Candidatus Regiella insecticola 5.15 GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLVTRGKEQGYLTYSEVNDHLPEDIVD-DQIEDIIQMINDMGIQVLEEAPDADDLMLAENTT--D---
-AVEAAAQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQCSVAEYPEAITYLLEQYDRAEADEVRLSDLIT
G---FVDPNPKEN-ED--I-------------STEQL----------DEGSDAEN--LAREKFSELREQYENTKKAIKKDGR------NHPN-----AKN
EILALSNIFKLFRLVPKQFDYLVNNMRLMMKQIRAQERIIIKLCEQCKMPKKIFLALSTRHETNE-WFDDALL-----ASEKLKEVAEDVDCCRKKLIQI
EEKTGLTVEQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVARQMLQEKGREPTPEELAEQMSMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLGSATSESLRSATHEV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|W7QKF0|W7QKF0_9ALTE RNA polymerase sigma factor RpoD OS=Catenovulum agarivorans DS-2 GN=rpoD PE=3 SV=1
----------------------MEQNRQSQLKLLVAKGKEQGYLTYAEVNDHLPQEIVD-DQIEDIISMINDMGIQVFEAAPDADALLMSEE----TN--
-AAEAAAQA---------L--ASVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQCSVAEFPEAITYLLDQYDKVEAEEIRLTDIVS
G---FIDPNEPDD-VM-APSA-----------SKEELD-----------DDDEEE--LAREKFNELRVAYENVMKVVDEKGR------SHPD-----TRA
KIEDLSNIFKLFRLVPKQFDKLVGHMRGMMDKVRTQERIIMKLAEYSKMPKKEFTKAFAGDETST-WLDSAVS-----GSNKLAEYKDEILRCIQKLKQI
EEETKLSVVSIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEKGREPTPEELAEQMQMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDNTISSPVDAATSENLQGATRDV
LAGLTARESKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|U3U5W7|U3U5W7_9ENTR RNA polymerase sigma factor RpoD OS=Candidatus Pantoea carbekii GN=rpoD PE=3 SV=1
----------------------MEQNSQSQLKLLVTRGKEQGYLTYAEVNDNLPRDIVD-NQINDIIQMINDMGIQVVEQAPDVDDLMLLNENS--TD--
-ATEEAVQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGEFRLSDLIT
G---FVDPNIVEDF------------------STEDR----------DDDENSED--LARQKFLELRNKYETTRTVIKTKGR------NHAD-----AIT
EIQNLSEVFKQFRLVPKQFDYLVKNMRGMMERVRTQERLIMKLCESCKMPKKSFIVLFSGNETNG-WFKTALT-----MSQKLHEVEKDVMRSLKKLLQI
EAEIGLTIDQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLIPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTLELPLDSATSESLRSVTHYV
LAGLTAREAKVLRMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|N2J9Z0|N2J9Z0_9PSED RNA polymerase sigma factor RpoD OS=Pseudomonas sp. HPB0071 GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRLKELIARGREQGYLTYSEVNDHLPEDISD-EQVEDIIRMINDMGINVFETAPDADTLLLAEA--------
-AAEEAAAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAHFPGSVEYILSEYDRVTSEGGRLSDVLS
G---YIDPDDGTL-PE--SES-----------------QS---DDEEEDDSEEET--EARQRFAAVAEQLEKTQKALQKHGR------SSDQ-----AIE
ELVALATLFMPIKLVPKQYEILVGRVRESLDRVRAQERAIMQLCRDARMPRADFLRSFPSNETNL-WVDKVLK-----NAEAIERLRPDIQRNQEKLIAL
QKELDLTVAEIKEINRNMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVATSESLKEATRDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|H5SD20|H5SD20_9GAMM RNA polymerase sigma factor RpoD OS=uncultured gamma proteobacterium GN=rpoD PE=3 SV=1
---------------------MNREQQQSQIKELIARGKMQGYLTYSEVNDHLPSDIID-DQVEDIIAMINDMGIEVVEEAPDDGQLL-PD--V-VVS--
-AEV--AAA---------L--VADDSEFGRTTDPVRMYMREMGTVELLTREGELELAKRIEEGQNQVAEALSRFPKVVEHFIHCFEQVVNGQAKVTDFIS
D---FIEASGLDEDEI-EEDD---------------------------DAEIIAE--EVKAKLELVKTRYQEVLNCLKQYGY------EDKR-----TQE
AYAGLAEIFMEFRRTPQFFKELTEILAAVVAEIRQEEKRILDLCKQAQMPRKLFIETFVGHETDP-WLESHLN-----SAEALKACADEIRRAQSRLLAI
EQANYLSIDQIKDINRRVSIGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELARRMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSKAMSPVEAATIEGLREAMQNV
LSSLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLE-
>sp|Q89B10|RPOD_BUCBP RNA polymerase sigma factor RpoD OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLVTYGKEQGYLTYSEINDHLSDNIIN-DQIEDIIQMINDMGIQVVEKAPDSDDLILHEIKR--NN--
-IVEATAQV---------L--STVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITHLLEQYNRVELGELRLSELIH
G---FVDPNAEAVHTS-IT-----------------E----------HTEENNDD--LAREKFIALKNQYHITNYAIKTKNR------NHQD-----TLI
EINNLSEIFKQFRLVPKQFDHLVINMRKMMQKIRIQERNIAKLCEYGNIPKKALLNFFSLQKTNQ-WSKIVQN-----IIDKFNTIKPDIQMILKKLQKV
EEETGLTIHQVKNINKRISLGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQEIGREPTPEELSERMLIPEDKIRKVLKIAKEPISMETPIGEDDDSHLGDFLEDTNIELPLDSATSASLRSATKNV
LSGLTTREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLD-
>tr|A0A094RAR2|A0A094RAR2_COBMA RNA polymerase sigma factor RpoD OS=Cobetia marina GN=rpoD PE=3 SV=1
--------------------MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIAD-EQVEDIISMINDMGIKVAEEAPDADTLMMS--DS---S--
-AAEEAVAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIKIAKRIEEGTREVMSSLAFLPGAVDSILEAYDGTLGDGGRLSDLFS
G---FIDPDEGVPGVA-EVEV----------------EG---------EDDDSAS--LARVRFEQIREQNEATKAAIEKYGS------GSAE-----AKA
EQDRLAELFSPIKLVPKHFERLVGQVRVSVEQVREQEKVILQIFKRGKVPRKSFIKAFPGHESDM-WFDSFIG-----GADKLEPFRADVLRAQRKIAFE
QDMVQLPVSELKEVNRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERLEMPEDKVRRVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMVSPIDSATGEGLIEATRGI
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSESLRSFME-
>tr|W1N889|W1N889_9GAMM RNA polymerase sigma factor RpoD OS=Halomonas huangheensis GN=rpoD PE=3 SV=1
--------------------MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIAD-DQVEDIIGMINDMGISVVEEAPDEDTLMMS--DH---S--
-AAEEAVAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGTREVMSALAYLPGAVDSILAAYDATQDAPGRLSDLFS
G---FIDPDEGIPGVA-EADV----------------EGD---ED---AEEEDDS--EARARFEQIREQSALADAAIEANGR------KSAQ-----AQE
ELARLAELFSPIKLVPKHFERLVGQVRISVEQVRAQEKSVMQLLKQAKVPRKTFIKAFPGNESRL-WLDDFMA-----AAERMKDLRGDVQRAQRKISFE
EEMVRLPVSEIKEVNRKLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTMVLPIDSATGEGLIEATRNV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEPLRSFLD-
>sp|P52327|RPOD_PSEPU RNA polymerase sigma factor RpoD OS=Pseudomonas putida GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISD-EQVEDIIRMINDMGINVFESAPDADALLLAEA--------
-AAEEAAAA---------L--AAVETDIRRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAHFPGTVDYILGEYDRVN-RGCRLSDVLS
G---YIDPDDNIAAPT--EEV----------------EAD---DDEEEGDDEEEP--LTRSSQPSVSVRYPS--SFSDHQGP------EEKRSYPQGKRR
ALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCRDARMPRADFLRMFPSNETDQ-WSGDLAK-----RAAALGEKDAAIVACQQKLIDL
ETETGLTVAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIYVATVESLKEATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAWRKLRHPTRSEHLRSFLD-
>tr|A0A077LC60|A0A077LC60_9PSED RNA polymerase sigma factor RpoD OS=Pseudomonas sp. StFLB209 GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISD-EQVEDIIRMINDMGIPVHESAPDADALMLADA--------
-AAEEAAAA---------L--AAVESDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAISHFPGTVEYILSEYTRVTSEGGRLSDVLS
G---YIDPDDGIA-PP--AEV----------------GDD---DEDEEGDDEEEA--VAQQRFGAVADQLAIALKALK-KGR------DDKQ-----AIA
EMLALADLFMPIKLVPKQFEVLVERVRGALERLRAQERAIMQLCRDARMPRADFLRQFPGNEVDL-WSDSLAN-----SGEAIVRFQPDIKRCQQKLRDL
EEETGLTVAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|U1JWX6|U1JWX6_PSEO7 RNA polymerase sigma factor RpoD OS=Pseudoalteromonas piscicida JCM 20779 GN=rpoD PE=3 SV=1
----------------------MDQSPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIID-DQVEDIISMINDMGIQVSENAPDADELMMQET--------
-AAEAAAAA---------L--ATVEKEIGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGINQVQISVAEYPEAITYLLEQWDKYEAEEMRLSDIVS
G---FFDPNAIEEDEA-PISA-----------SDEDLDE------D--DDDSEEG--EAREHFEQLRTLYNKAREIFESKGR------SHPD-----AKA
AIQEIGDHFRTFKLVPKQFDRMVNNMRDMMDKVRVQERIIMKQAQIAKVPKKVFVKHFANNETDT-WIDAEIA-----SSAKLAEVKPEIERCVNKLKAF
EDSTGLSIERIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIESPIDSATMESLRGATNEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDLLKSFLD-
>tr|A0A084CMS8|A0A084CMS8_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Photodesmus blepharus GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPEEIVD-EQVEDIIQMINDMGIKVVETAPDADDLALNDDST------
-VAEAAAAA---------L--SSVENEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGISQVQNAVVEYPGTIPYILEQFDRVQAEELRLTDLIS
G---FVDLNDDGTA------------------TESDLE--------------EDG--LALEKFTDLRKSYQELQLVINKYGV------ESTK-----VFQ
ATKILQEVFSEFRLTPKQFDYLVNELRISMDRVRTQERLIMHQTEYGKMPKKSFIARFTGNESSQ-WLDEVFA-----SVEKIKSSEDNIRRSIEKLDII
ENETSLTVQSIKEISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSTSLKVATRDV
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|U4K8C4|U4K8C4_9VIBR RNA polymerase, sigma 70 (Sigma D) factor OS=Vibrio nigripulchritudo GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPQEIVD-EQVEDIIQMINDMGIQVVETAPDADDLMMNE--A------
-AAEAAAAA---------L--STVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPGTISYILEQFDKVQAEELRLTDIIS
G---FVDPNDEETA------------------AEQDLDDS---D----DDDDEEE--LAAEKFNELRTAYQNLQLAINEKGR------ETAL-----ASE
SATELLDVFRQFRLIPKQFDYLVNELRTSMDRVRTQERLIMRSCEYGDMPKKSFVALFTGNESSE-WLDEVLA-----SADKIKRNEEEIRRSILKLKTI
EEETSLPVQSIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSTSLRVATKDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A090IJN5|A0A090IJN5_9GAMM RNA polymerase sigma factor RpoD OS=Aliivibrio wodanis GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPEEIVD-EQVEDIIQMINDMGIKVVETAPDADDMSLNDDDA------
-AAEAAAAA---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCSVAEFPGAISYLLEQFDRVQAEEIRLTDIIS
G---FVDPNDDGSA------------------SESDLEEA---E----DDDEDEE--LALEKFTELRTSYHNMQLAFEEHGR------DNAK-----ARS
AISELTDVFREFKLIPKQFDYLVREMRGSMDRVRTQERLIMRMCEYGKMPKKSFIALFSGNEASD-WFNEIIA-----SVERLKRYEEDIRRSIKKIDSI
VKETGLPVVNIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSATSTSLKFATNDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|U3CRB0|U3CRB0_9VIBR RNA polymerase sigma factor RpoD OS=Vibrio ezurae NBRC 102218 GN=rpoD PE=3 SV=1
----------------------MDQNRQSQLKALVLKGKEQGYLTYAEVNDHLPPEIVD-EQVEDIIQMINDMGIKVVENATEIDDDTINDEST------
-AAEAAVAA---------L--STVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQASVAEFPGTIPYVLEQFDKVQAEELRLTDIIS
G---FVDPDDDGTT------------------AKTDLDDA---E----DEDEEEE--LALEKFTNLRNTYQNLQLVSNSEGR------DSKA-----FKV
ATAKVNDVFREFRLTPKQFDHLVTQLRTSMERVRTQERLIMRQTEYGGMPKKEFVKTFTGNESSD-WVDNVLS-----SKEKIRRNEEDIRRSIQKLKSI
EQETSLTVQSIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKFATKDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A090R5J9|A0A090R5J9_9VIBR RNA polymerase sigma factor RpoD OS=Vibrio sp. C7 GN=rpoD PE=3 SV=1
----------------------MEQSPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVD-EQVEDIIQMINDMGIKVVETAPDADDLAINDDNN------
-AAEAAAAA---------L--SSVENEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSAVTEYPGTIPYVLEQFDKVQAEELRLTDIIS
G---FVDPNDDGTS------------------AEADLEGS---DESED-E-EEEE--LALEKFTELRNTFQNRQLAINEHGA------DSSQ-----AKQ
AGELVKEVFAEFRLTPKQFDYLVDELRTSMDRVRTQERLIMRSVEYGKMPKKSFIALFTGNESSD-WLDEVLA-----SADKIRRSEEDIRRCIQKLAII
EEETSLTVQSIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPVDSATATSLRGATRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A1SRR1|A1SRR1_PSYIN RNA polymerase sigma factor RpoD OS=Psychromonas ingrahamii (strain 37) GN=rpoD PE=3 SV=1
----------------------MAQTPQSQLKELIIKGKEKGFLTYAEVNDHLPQDIVE-EQIEDIIQMIGDMGIRVVETAPDADDMLIGADDS---E--
-AVEAAAQV---------L--ATVESEIGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIKEVQTAVSEYPATISGLLDNWDSYEAEEMKLTDLIS
G---FVDPNDDMTQ------------------SKKQL------KADKDEDDEEEG--EAAEKFAELRKLNQVVEDSITKNGR------AHAE-----TRA
AINEQAEFFQQFKLIPKQFDRMVKAIRFAMNAVRVQERLALKICEQCKMPKKEFIKLFKGNETNP-WLEVILS-----NATRISEFEEDLRRCLRKMLAV
EVQSVLTITNMKGISRNMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPQPEELAERMMMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIALPANCATSESLKNATNDV
LEGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|M4U5Q0|M4U5Q0_9GAMM RNA polymerase sigma factor RpoD OS=Psychromonas sp. CNPT3 GN=rpoD PE=3 SV=1
----------------------MAQTPQSQLKELIIKGKEKGFLTYAEVNDHLPQDIFE-EQIEDIIQMIGDMGIKVYETAPDADEISLGEESN---D--
-AVEAAAQV---------L--ATVESEIGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIKEVQTSVSEYPGTITGLLDNWDSYEAEEMKLTDMIS
G---FIDPNDDMTQ------------------TDAQK---------KDEDEEEEG--ESAEKFTELRRLNTIVEDMIAKHGR------AHAK-----TRT
AINAQAEFFQQFKLIPKQFDRMVKTIRASMNMVRTQERLVLKICEQNKMPKKAFISLFKGNETNK-WLDAIYA-----TAKRIKEFDEDLVRCIRKMALV
ETQTALTIINLKEISRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGRDPHPDELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIALPVDCATSESLKNATNEV
LEGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A078LT51|A0A078LT51_9PSED RNA polymerase sigma factor RpoD OS=Pseudomonas sp. 20_BN GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRLKELIQRGREQGYLTYAEVNDHLPEDISD-EQVEDIIRMINDMGINVFEVAPDADALLLAEA--------
-AAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAHFPGTVDSILADYNRVTTEGGRLTEIFN
G---YIDPDDDGAAAP-QE-A----------------KDE---E-EEEEAEEEEG--VARVRFGAVADQLEVAKKALKKHGR------GSKQ-----ATE
ALQELATLFMPIKLIPKQYDALVLQVRESLSQVRAQERAIMQLCRDARMPRADFLRQFPGNETDL-WADKLAS-----GAEAIGARKEDIQRCQQKLIAL
QEECELDIADIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPIDVATVESLKEATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|N6X0J2|N6X0J2_9ALTE RNA polymerase sigma factor RpoD OS=Marinobacter nanhaiticus D15-8W GN=rpoD PE=3 SV=1
---------------------MSGNSQKSRLKDLIARGKEQGYLTYAEVNDHLPEDIAD-DQVEDIIRMINDMGIQVAEEAPDADTLLMT--DG-DAT--
-AAAEAAAA---------L--AAVETDAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIRDVMAAIAHFPGTTGTVIQAYERIVENEGRLSDIVT
G---FLDPDDAEPFMP-EDTS------------------S---DSDDDNNSDEDT--ETRLRFELLKEKLEIANKALEKHGR------DDQR-----TQD
ALNDLGQVFAPFKLANKAFDELVNVIRSTNEAVRENERAIMTICRESGMPRKDFIKSFPGNETNL-WAPKLAG-----NGEKVAERLDEVVRMQKRILNI
QTDVDLTVAEIKEINRRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATAEGLREATRSV
LAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFID-
>tr|A0A0H4I1J3|A0A0H4I1J3_9ALTE RNA polymerase sigma factor RpoD OS=Marinobacter psychrophilus GN=rpoD PE=3 SV=1
---------------------MSGNSQKSRLKDLIARGKEQGYLTYAEVNDHLPEDIAD-DQVEDIIRMINDMGIQVTEVAPDADTLIMT--DG-DST--
-ATAEAAAA---------L--AAVESDAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIRDVMAAVAHFPGTTGTVIQGYDRIVENEGRLSDIVA
G---FLDPDDAEPFMP-EEPA------------------S---DS-DDDAEEEET--ETRLRFDLLKEKLAVANELLEQHGR------SDKR-----TQK
ALNELGAVFAPFKLGNKAFDGLVNVVRSTNDMIRQNERTIMRICRESKMDRKEFIKSFPGNEINL-WAEKIAR-----SASAISERLDEIVRLQKRIKNV
QLEVDLDVVDIKEINRRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVDSATAEGLREATRSV
LAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFID-
>tr|A0A063Y4P6|A0A063Y4P6_9GAMM RNA polymerase sigma factor RpoD OS=Nitrincola lacisaponensis GN=rpoD PE=3 SV=1
--------------------MSDTSQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIAD-DQVEDIIRMINDMGISVSEEAPDAETLLMT--EG-DSA--
-ADEEAVAA---------L--AAVESDAGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMMALSYFPGSVDAILAAYDATLQEEGRLSDIFS
G---YIDPDAPVPEDE-IDIE----------------DDD---DDEDDDSSDDEK--EARQRFGLIRDCLTAYQQAIATEGQ------DSKA-----AKL
ALEELSIAFAPIKLSPRFYDLLVNRIREYIEKVRTQERTIMRICQRAGMPRKDFIQGFPGNETNP-WFDTLAS-----GADKITQNLGDLKRAQRRLIQI
ETEVGISLAEIKDVNRRLSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAEKMEMPEDKIRKVLKIAKEPISMETPIGDDEDSSLGDFIEDVVMTSPVDTATGEGLREATRSV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRGFLD-
>tr|A0A0F3KVI1|A0A0F3KVI1_9GAMM RNA polymerase sigma factor RpoD OS=Luteibacter yeojuensis GN=rpoD PE=3 SV=1
-------------------MTNKAHEQQSEIKQLISKGLEQGYLTYAEINDHLPDDIVD-EQIEDIMAVLKGVGIEVHDSAPDTDTISDGGAPG-SGS--
-AAEEAVAL---------L--SAVDSEVGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLNQVQTALASFPLTIQLLLEEYDQHLEGKRRLSEILA
G---FADLEAAADEAQ-AAAA----------------ESD---DDDDSSSDEDEG--EVKRRMEELRSLHAKFQKSAPKAEI------ADKK-----VAK
IREQMSEAFLNLKLPSALIDSFVRKLREVVNDIRHHERILMDIFKQVKMPRAEFLKSFPSNEGNL-WAADLSR-----KSPNIKNFREAIDGEQEKLAQI
ERTLYLPLTDIKEINRAMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREPTPEELAKEMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTNASSPIESATETGLMETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|C7BKF0|C7BKF0_PHOAA RNA polymerase sigma factor RpoD OS=Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) GN=rpoD PE=3 SV=1
-------------------YRLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVD-DQIEDIIQMINDMGIQVMEEAPDADDLMLAETTN------
-AVEAAAQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLIT
G---FVDPNAEEDLAP-TAT------------PQEE-DDD---DEDDEDDSDGDD--LARQKFQELHEQYEITRQEIKKNGR------DHAN-----TTA
EILKLSEIFKQFRLVPKQFDYLVNNMRSMMDRVRLQERQIMKMCEQCKMPKKNFITLFSGNETSD-WFTAAKA-----MSEKLLEVEEEIQRSLQRLRQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|E8Q6M6|E8Q6M6_BLOVB RNA polymerase sigma factor RpoD OS=Blochmannia vafer (strain BVAF) GN=rpoD PE=3 SV=1
----------------------MEHNPQSQLKLLVTRGKEQGYLTFSEVNDHLSEDIID-DQLHNIIQMMNDMGIQVMEEAPDSDEFLLTKNCDTVVN--
-ATEAAVQA---------L--SNTDPDLGRTTDPVRMYMKEMGAVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYQRVETGETRLSDLIT
G---FVDLDNFNQNVE-TIPN---------------L----------DNTENEDD--LARKKFIALRKQYETTRQTIKYNGR------NHDK-----SSS
EILKLSEIFKQFRLVPKQFDYLVNNMRSMMDRIRFHERLIMKLCDISKMPKKKFIDLFSGNETNK-WLIQALS-----MAKKLDTVNAEVQQNIWQLYQI
EKETGLTIEQVKNINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQETGCEPTPEELSKRMLISEDKIRKVLKIAKEPVSMETPIGDDEDSHLGDFIEDTNLDLPLDSATSDNLKAATNDV
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLD-
>tr|A0A0H4VD96|A0A0H4VD96_9COXI RNA polymerase sigma factor RpoD OS=Coxiella-like endosymbiont GN=rpoD PE=3 SV=1
-------------------EENIIESQRLGFSTLLEEAKNKGYLVHEDLINLLPNDYAD-TQMEGIIGRLTEMGIKVFEIPPDADSLLLEE--D-TQS--
-KDD--------------V--AEVLATETRTTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIRQVMGAVVQYPELIESFIKEYETTVATESRLSDLLI
G---FFDEERGLPPEA-AK-------------------TE---DQKEEEGADEFG--ITQKNMEELKALYGRYLNAIKRYGK------KTPA-----TLK
HQRNLAEFFSTFKLSIRQFNRLTGRLLRLLKEARSHDRLIMAYCVKAKTPRKKFIASFPHNETNM-WLEQYKK-----EAKRLELYSKEIYRAQRNLIQL
EEKSNLTIQEIKEINRRVAIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQETGMEATPEELGRRMDMSEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDVNMESPIDFATSAGLVEATREI
LATLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKLHSFLE-
>tr|A0A0A8E8D4|A0A0A8E8D4_9COXI RNA polymerase sigma factor RpoD OS=Coxiella endosymbiont of Amblyomma americanum GN=rpoD PE=3 SV=1
-------------------EENISEIQHSGFNALLDEAKNKRYLVHEDLINLLPNDYTD-AQMEGIISRLTEMGIKVFEIPPDADSMLLED---------
-QSDD-EED---------V--AEVLATETRTTDPVRMYMREMGSVELLTREGEIVIAKKIESGIRQVMGAMVQYPKLIESFIREYES-II-EGRLSDLLI
D---FFDEEKLFPLFE-TS-------------KEGDIG--------IEVSDEFVG--VTQKHIEELKILYDRYLQAIKSYGK------TAPI-----TLK
NQKNLAEYFSTFKLSMRQFNQLTGRLRYLLKEVHHYERLIMNYCIKANTSRKKFIASFPYNETNM-WLEKYKK-----ESKQLEFYSRDVYRAQQNLAQL
EKKSNLTIQEIKEINRRIAIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQIFQETGIEATPEELGRHMDMSEEKVRKVLKIAKEPISMETPIGEDEDSNLSDFIEDANIESPIDFATSASLIEAIRDI
LSTLTPRESKVLHMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKLYSFLE-
>tr|A9KDP1|A9KDP1_COXBN RNA polymerase sigma factor RpoD OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpoD PE=3 SV=1
-------------------GENAAESQRLGFGALLEEAKNKGYLVHEDLINLLPNDYAD-SQMEGIIGRLTEMGIKVFEIPPDADSLLLEE--D-TQS--
-NED--------------V--AEVLATETRTTDPVRMYMREMGSVELLTREGEIVIAKRIEEGIRQVMGAVVQYPELIEKFIKEYDTIVATEGRLSDLLI
G---FFDEEESTASPV-APEA-----------------ET---SDEDDGGSDEFG--ITQQHMEELKKLYGRYQNAIKRYGK------KAPA-----TLK
HQKALAELFSTFKLSIKQFNRLTGQLRRMLRAARAQERLIMSYCVKAKTPRKKFIASFPHNETNM-WLEQYKN-----EAKRLEKYSKEIYRAQRNLAQL
EEQNNLNIQEIKEINRRVAIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRMDMPEEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEATREI
LSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKLHSFIE-
>tr|K2ET01|K2ET01_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
-------------------KEEALTKQKTELKNLITKGKDQGYLTFTEVNDNLPPEIVD-DQIEDIIGMLNDMGIPIYEDTPDTEATLLNDNTP-IIT--
--EEEQATP---------V--VAAEDETGRTSDPVRMYMREMGTVELLTRSGEIAIAKRIEEGSKHVLSALAQYPGIIDSILAEYAKTETTDKRLQEIIS
G---FYDIEEWHTPPT-DAQK----------IKKDEDALD---QDESEDDELDLF--VAKERFTELYELNRQYTKALAKNGE------SHKK-----TTK
LHQQLIDAFTKFKLTPKEFHKQTTKLSKILERIRANEHLIMELCKKSKVARKAFINSFPHHETDL-WVDKFAK-----AAAALLHNAKEIHRAQKKLLAI
EKEVNLSIAEIKNISRQVTAGDTKTRKAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQIIQETGVEPSPEELSVRMQMHEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDANTLSPTDSATHGGLREATNDV
LSSLTPREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLQSFVD-
>tr|I9WP57|I9WP57_9RHIZ RNA polymerase sigma factor RpoD OS=Methylobacterium sp. GXF4 GN=rpoD PE=3 SV=1
-------------------DGPLLDLTDASVKRMVKLAKKRGYVTYEEVNEVLPEGQSD-DQLEDVLSQLSEMGINVVEAEETDEAAAGEKTA--NGAAE
-PTRAVAVT------------TTTKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVEGKVLLRDIID
LEATYAGPDGKNAPQI-AEGE----------------------PPA-PGDDEDDLKPRVLETFDAIAANYRKLRKFQTEGAERKAAGEKNSPAQDQKQIE
LKDSVVADVKSLSLNNNRIEALVGQLYSINKQLIGHEGRLMRYAESHGVARDEFLRHYQGYELDP-WMERVGT-----LKNLVERGSKQVSELRAQILDL
ASETGLEIGEYRRIVNMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|Q1N3T8|Q1N3T8_9GAMM RNA polymerase sigma factor RpoD OS=Bermanella marisrubri GN=rpoD PE=3 SV=1
----------------------MAVTQQSRLKELIAKGKEQGYLTYAQVNDHLPDDIAT-EQVEDIIRMINDIGITVSEVAPDADELNMG--EV---T--
-AIEEAAAA---------L--AAVETDVGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIREVMAALSYFPGAVRTVLDAVEESMAEINRLGDVFN
G---FIDASDDDPEPA-TPVS----------------------ADKDSDDDSSDA--EVKRRMAEIEKQLDKTEKAIEKHGR------GSKQ-----ADK
EGEKLAELFAPIKLSPKYFDDLVGTARDNLDFIRVQERQIMVICRKAKMKRQEFIKSFQGNEGND-WIDDLIN-----ASQIIENHGYDLKRAQKKIRQV
KDRVGLEISDIKEINRRVSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREATPEELAERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVNGHSPIDTATETGLTDATRSV
LSGLTARESKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLD-
>tr|A0A0D6PAG4|A0A0D6PAG4_9PROT RNA polymerase sigma factor RpoD OS=Acidocella aminolytica 101 = DSM 11237 GN=rpoD PE=3 SV=1
-------------------DANVLDTQSGAVKRLIAKGKERGYITFDELNAVLPAEQNS-EQIEDIMAMLNEMGIQVVESEENEEAETAAAPK-------
-NEEEEQAG------------NVSEASVSRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDMMIRGLCESPLTFRAIIAWHEALNNGRVLLRDVID
LEAMQNG-AEPTDDSF-EN------------------N-------ENNDEDEDGEKPEIFQNFDEIEKLYDKLSKMQTKRIETLTAGEDVNARNEKAYEK
LRDELVAKVEQVRLHNNRIEELVAQLKVLNQRLNGLEGQLLRLAESTKVSRDDFLAHYRGNEMDP-WLAQMAE-----LKEFVRKHETQANELRTQIGRV
ASEAGLPIEEFRRVYMTVSRGERDSTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKAAIIPLDAAVHANLREAATRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A5FWU9|A5FWU9_ACICJ RNA polymerase sigma factor RpoD OS=Acidiphilium cryptum (strain JF-5) GN=rpoD PE=3 SV=1
-------------------DTATLDIQSASVKRLIARGKERGYITFDELNAVLPSEQNS-EQIEDVMSMLSEMGIQVVEGEEGEEAETAGRAE-------
-EDEEAASG------------NISESSGSRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDMMIGGLCESPLTFRAIISWHESLKDGKMLLRDVID
LEATQGG-GD---GGF-NP------------------A-------AVPEEDEEGEKPEVFETFTEVEKLYEKFMKLQHKRLEALNAGEEMASRSEKTYEK
LRDELVAKVEQVSLHNNRIEELVIQLKELNQRLNGLEGQMLRLAEGCKITRDDFLDAYRGREMDP-WLDDVAK-----RKVFVERYGTQVTELRAQIGRI
AAEAQLPIEEFRRVYSTVSRGERDSTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPLDAAVHANLREAATRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLE-
>tr|Q2ISI7|Q2ISI7_RHOP2 RNA polymerase sigma factor RpoD OS=Rhodopseudomonas palustris (strain HaA2) GN=rpoD PE=3 SV=1
-------------------PSPLLDLSDAAVKKMIKQAKKRGFVTFDQLNEVLPSDTTS-EQIEDIMSMLSDMGINVSEAEESDSEDEDAKDEA----EP
---TQKAVT---------E--TKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIID
LEATYAGPDAKANMNP-AMAE--------T-AQQ-RS---EGGGEGAAM-DDDEFKPKVVETFDKIADNYKKLRKLQEQDIANQLQGPSLSPSQERKYKK
LKDEIIVEVKSLRLNQARIDSLVEQLYDINKKLVSFEGRLLRLGDSHGVAREDFLRNYQGSELDP-WLNRVSK-----LKNFVHFEKDRIRELRQEIQSM
AALTGLEIGEFRKIVHSVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|U4VEP7|U4VEP7_9RHIZ RNA polymerase sigma factor RpoD OS=Ochrobactrum intermedium 229E GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDDAVKKMIKLAKKRGYVTMDELNAVLPSEEVT-EQIEDTMSMLSDMGINVVEDDEQDNDREDNS-------EG
--GGTAVAT---------T--TTKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDQLNDSNILLREIID
LETTYAGPEAKQAPPV-IERV------------RRSR----VGGDMPV-EEEDEDRPQVMETLDLIADTYKKLRKLQDQQVEGRLATGELSSSQERRYKE
LKDQLIKAVKSLSLNQNRIEQLVEQLYDINKRLVQNEGKLLRLAESFGVRREEFLKEYQGHELDP-WVERVST-----LKEFAAKEERTIDRLRSEIQML
ATETAISIGEFRRIVNQVQKGEREATIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRDTTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D6MVT5|A0A0D6MVT5_ACEAC RNA polymerase sigma factor RpoD OS=Acetobacter aceti NBRC 14818 GN=rpoD PE=3 SV=1
-------------------DNALLDTRSGAVKRLIAKGRERGYITFDELNAVLPQDQMS-EQIEDVMAILSEMGIQVVENEDNDETETPAEKTA----AE
-AGTESASG------------N-VSENLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNEMIGGLCESPLTFRAIISWHERLKVGDMLLRDIVD
LEAMQAE-QNGPEGVP-AEGE----------------D-------AEDVDGAEGEKPDILLQFDEIEPLYEKLQKMQDKRLEALVAGEETTDKIEADYQK
LRLELVAKVEQVHLHNNRIEELVMQLKELFQSLNAFEGRMLRLAESCKVSRDDFLLKYRGHELEP-WMDMITT-----LKNLVTKHTDMMNDLRTQVAEL
AQDTGLSVGEFRRVYATVARGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAIIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A099F7T1|A0A099F7T1_9RHOB RNA polymerase sigma factor RpoD OS=Paracoccus halophilus GN=rpoD PE=3 SV=1
-------------------DAHTLDMSQAAVKRMIAEGRDRGYITYDQLNAVLPPEQVS-DQIEDVMSMLSEMDIRVVENDEEAEEGEQG----------
GSGSREVAI---------A--TTETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFKAITMWRQELLDEDILLRDVID
LETTFGRAMDDGEDEE-ELAP----------GNP---LDADGNPIPSADEDDEDDKPKVLETLEAIARGYEELAHMQDNRMSATLEDDTFSASDELAYQK
LRSRIVALVNELHLHNNRIEALVDQIYGINRRIVSIDSGMVKLADAARINRREFIDVYRGAELDP-WVERMME-----NQALFDKSRAQVENLRSDMAMV
GQHVGVDIEEFRRIVNQVQRGEKESRQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELADKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|S5YCU8|S5YCU8_PARAH RNA polymerase sigma factor RpoD OS=Paracoccus aminophilus JCM 7686 GN=rpoD PE=3 SV=1
-------------------DEHSLDMSQTAVKRMIAEGRERGFITYDQLNAVLPPDQVS-DQIEDVMSMLSEMDIRVVESDEDSDDSE-T----------
GSGSREVAL---------A--TTETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFKAITMWREELLDEDILLRDVID
LEATFGRVLDEEGEDT-ELET-----------AR---FDADGNPMRR-DEEDDEDKPKVLETLEQIAHGYEELAHMQDSRMSATLEDSTFSASDELAYQR
KRSEIVLLVNELHLHNNRIEALVDQIYGINRRILTIDSGMVKLADAARINRQEFIKAYRGCELDP-WVDRMSS-----GQTLFDKSRDQVDRLRGDMADV
GQYVGVDIEEFRRIVNQVQRGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLESAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A099GI45|A0A099GI45_9RHOB RNA polymerase sigma factor RpoD OS=Paracoccus sanguinis GN=rpoD PE=3 SV=1
-------------------DDHSLDMSQAAVKRMIAEARERGYITYDQLNTVLPPEQVS-EQIEDVMSMLSEMGINVIEDEE-AEEGEQG----------
ASTSREVAV---------A--TTETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFKAITMWRQELLNEDILLRDVID
LETTFGRAMGDEGEGD-ADLP----------PQW---VDADGNPMRRDADDEDDEKPRVLETLEAIARDYEQLADMQDQRMSATLEDESFSARDEAAYQK
LRSEIVGLVNELHLHNNRIEALVDQIYGINRSIVTIDSGMVKLADAARINRREFIEAYRGSELDP-WIDRMRG-----NQALFDKNLAGVEKLRHDMARV
GQHVGVDIEEFRRIVNQVQRGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|G8PUZ4|G8PUZ4_PSEUV RNA polymerase sigma factor RpoD OS=Pseudovibrio sp. (strain FO-BEG1) GN=rpoD PE=3 SV=1
-------------------DGPLLDLSVAAVKKMIKTAKKRGYITYDELNEVLPPDQVS-EQIEDTMSLLSEMGINVVEAEDAEEGKEEED-------VD
-SSTAV-TK---------T--STAKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMISGLCESPLTFQAIIIWGEELAEGKVLLRDIID
LDATYSGPGDAGGPSD-DDLS----------RKA-NGE-Q--TGEG-GDDDDDEYKPMVVEIFDKITEDYKKLRKLQDQLVENKLANKTLSPSQERRYKK
LKEDIIAEVKSLHLNANRIETLVQQLYSINKMLMGYEGRLLRLADSNGVNRADFIKHYQGSELDP-WIRKVAN-----LKKFVTNDGDMIRELRGEIQSL
ATETGLEITEFRTLVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|B1ZL21|B1ZL21_METPB RNA polymerase sigma factor RpoD OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rpoD PE=3 SV=1
-------------------DGPLLDLTDAAVKRMVKLAKKRGYVTYEEINEVLPDGQVD-DQIEDVLAQLDDMGIRVVEAEESEETATEAKAN--GEAAE
AGSRAVAVA---------T--PTTREPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVDGKVLLRDIID
LEATYAGPDARGAPQG-GEAE----------------------GAV-PGDDEDDMKPRVLETFDNIASNYRKLRKLQNEETDLKAGGGTVTSAQTKKQAE
LKDIVVTDVKSLSLNANRIEALVEQLYDINKRLISHEGRLMRAAEHHGVARDEFLRHYQGYELDP-WMDRVAT-----LKNFVERGGRQVADLREQILTL
ASETGLQIGEYRKIVAMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0E2Z188|A0A0E2Z188_9GAMM RNA polymerase sigma factor RpoD OS=Nitrosococcus oceani C-27 GN=rpoD PE=3 SV=1
---------------------MDFEMRQEELKRLILKGKAQGLLTEEELQDYIIQEVED-DEAETMAHLFHHQGLDEFNEALDSTLLLKNSSE-------
E--EIAETL---------P--TLEGESTGAVSDMVYAYMREMGAHALLTREEEITLAKAIETGLSQSTEALGNCPAAVAELVRWAEEVATGKGRLKDWLT
GFTEPEIE--ETEIKD--G---------------------ES------------SLSRVRT-------LYGNLEATLAQE-----------GVASPRARE
LRRKLAREFQFLRLIPSRINQLTQLVQGWISKAQTQEQIIRSCCIHQGEMQEDFWHNFSSGTTHP-WLDD---LASRIDRQGLQTQAKTLRAAQAVLLQV
EVEAGLPLDELKAIHQRLVRSQFQAQRAKAQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYHRGYKFSTYAHWWIRQAITRAIDDQS
RTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERLALSEQQIHRMHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQTGAQQL
LAALSPREAQVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRRLGHSKALRNFLE-
>tr|D8K4Z8|D8K4Z8_NITWC RNA polymerase sigma factor RpoD OS=Nitrosococcus watsoni (strain C-113) GN=rpoD PE=3 SV=1
---------------------MDFEVRQEELKRLILKGKAQGLLTEEELQEYIIQEVED-DEAETMANLFHHQGLDEFDETLDSTLLLKHGAE-------
E--EIAEAV---------P--SLEGEGTGTVSDMVYAYMREMGSHALLTREEEITLAKAIETGLNQSTEALGGCPAAVAELLRWTDEVAAGKGRLKDWLT
GFTEAEIE--ETGIRD--E---------------------ES------------NISRVCA-------LYSKLETTLTQE-----------GIASPRARE
LRSKLAQEFRFLRLIPSRIKQLTQLVQTWISKAQTQEHIIRNCCIHQGGMQEDSWQVLSSNTTHP-WLDN---LASGIDRQRLQAQAKTIRAAQAVLLQV
EAEAGLPLAELKVIHQRLVQSQFQAQRAKAQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYHRGYKFSTYAHWWIRQAITRAIDDQS
RTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERLDLSEQQIHRMHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQTGAQRL
LAALSPREAQVVAMRFGIGMDTDHTLGEVARQFDLSRERIRQIEAQALGKLRRLGHSKALRNFLE-
>tr|D5C3M3|D5C3M3_NITHN RNA polymerase sigma factor RpoD OS=Nitrosococcus halophilus (strain Nc4) GN=rpoD PE=3 SV=1
---------------------MDFEMRQEELKRLILKGKAQGLLTEEELQEYIVQEVED-DEAEAVVNLFHDQDLEELDEKIDPALLLKNGTE-------
S--EEETAE-------------VVLSSDGAISDMVNTYMREMGAHALLAREEEVALAKAIEAGLSQSTEALGSCPAIAAELLRWADEADAGEARLTDWLI
GFTETETTTPETETED--T---------------------GL------------NLSRIRT-------LHSELEIALTRE-----------GVASAQARE
LRGELAQEFGLLRLVPARLKQLAQPVQEWIRKVQTQEQVLKSCCIHQGGVQEDFWQSFSSNATNP-WVED---LAGQEDRQPLQAQAETIRAAQKVLTQV
EIEVGLPLAELKTVHRRLTRGQIQAQRAKAQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMRAVDKFDYRRGYKFSTYAHWWIRQAITRAIDDQS
RTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERLALSEQQIHHMHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAISAGLQAGTQQL
LATLTPREAQVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALSKLRRLGHSKALRSFLE-
>tr|K1XTS4|K1XTS4_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
-------------------EDSKNSSLDKVIDLIIKKGNVDGQLTFDDINKILEKRKIV-DDLDYILEACDKNGITIIDNSGDDSND----A--------
-----RNKL---------K--KLKKSSSDVLDDPVRMYLKQMGSVPLLTREQEVEICKRIEKTENFLRENIFLFGHIPREAHLLAKKIISGKERFDRIIQ
DSKFLNRE-----------------------------------------------LKDFLAYDKELNDLFEEMQKYSKKSA--------ETEKFLKKFNK
TNAKMSELLSSFYFKQKAIEDFVDVVNEYKFKIRKLMQEIET-----------------------------------EKSSKSEEVQKELKNKKRKLKKY
ELMVRMDAKEYLDKAEEIDKWATEARLAKQEMIESNLRLVISIAKKYTNRGLSFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRASKKLIQEKGREATPEDLADGMKIPVEKIRSILKMAQHPISLQAPIGEGEDSHFGDFIEDKGSDSPADLTGHSLLKEKMDDV
LSTLTPREKKVLMLRFGVGDGTPRTLEEVGKEFAVTRERVRQIEAKALRKMRHPIRSKKLKGFLE-
>tr|A0A0C1QRD5|A0A0C1QRD5_9DELT RNA polymerase sigma factor RpoD OS=Geobacter soli GN=rpoD PE=3 SV=1
---------------------MAKKSTDEVK-QLIDLGKEKGFLTYDEVNDLLPPDI-S-EQIDDVMSMFGEMDIDIVDSAQKVKIPKMKL--DLE----
EVEGEQEDF---------E--YEPGA-LGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEEGERDIAGVILNTPITVKEVISLGDKLLKGQVSAAEISK
EVEEEE------------------------------------------EEDVQ--VEEIAAVDVRLVALNAELDEE-G-LAD------SRREELTAGRQE
LKEKLAEMVAALRLKDRHIAKIAQRLKELSAKVDTIMAEIVAIEKEAGISADI-----LKEIAASAVGKG---VK--LSLEDAQKHEKRLRSAEKKLKKV
EDESGFKARELSDALRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTARV
LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLRSFVE-
>tr|Q39YN6|Q39YN6_GEOMG RNA polymerase sigma factor RpoD OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpoD PE=3 SV=1
---------------------MAKKSSDEVKQQLVDIGKEKGFLTYDEVNDVLPPDF-S-EQIDDVMSMFGEMDIDLVDSSQKVKIPKMKL--DLE----
EMEGEQEEM---------E--YEPGV-LGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEEGERDIARVILTTPITVKEIIALGDKLRKFQISAAEISK
EVEEEE------------------------------------------EEDVQ--IDEIRDLDVRMEAIAEELDAE-G-AAA------KRQKELHAEQHE
IREKFADLVKSLRLKDRHITKIAQRLKELSGKVEAILTEIAAVETEAGINGER-----LKEIVAKD---E---KALKVNLEDAQKLDKKIRAAEKKLKKL
EHESGFKAQELSDALHAIDRGEAKAKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTSRV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLKSFVE-
>tr|A0A0B5B769|A0A0B5B769_9DELT RNA polymerase sigma factor RpoD OS=Geobacter pickeringii GN=rpoD PE=3 SV=1
---------------------MAKKSTDEVK-QLIDLGKEKGFLTYDEVNDLLPPDI-S-EQIDDVMSMFGEMDIDVVDSAQKVKISKMKL--DLE----
EVEGEQEEM---------E--FEPGA-LGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEEGEGDMARVILNTPITVKEIIALGEKLRKFQITPAEISK
EVEEEE------------------------------------------EEDVQ--IDEIRDHDLRLETINGELEDE-A-LAA------ERRDELAGELQE
LKAKVAELVKSLRLKDRHITKIAQRLKELSVKVIKIRAEITEIEAEAGISSGD-----IKTIAAGKVAKD---VELKVPADEVPKLEKRLAGTEKKLKKV
ELESGFKASELASALQAIERGEAKSKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTARV
LATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKKLKSFVE-
>tr|A1ATH4|A1ATH4_PELPD RNA polymerase sigma factor RpoD OS=Pelobacter propionicus (strain DSM 2379) GN=rpoD PE=3 SV=1
---------------------MVKKNMDGVK-QLIDLGKEKGFLTFEEVNDILPPDI-A-EQIDDVMGMFGDLDIEIVDSAQKVKIPKMKL--EME----
EAEGEAEEV---------E--FEPGS-IGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEDGERDVASVILNTPITIKEVLQLGDKLRKFQLNASEISK
EVEEES------------------------------------------EEDLP--IDAISSGDEELTGLSEELEKC-A-AA-------AKKKELEKKIQE
LRESQAKLLISLRLKDRHINKISERLKELSFKVDRLMKELADLEDLIPAE---KLRFFMDSYHKDEKAQA---ELLKLGAEEQDRVDARLLSTARKLKKI
ELESGFKASELSAALQAIEEGECKARIAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQENGREPAPEEIAERMQLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKAVISPIEAVIKANLSEQTSRV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRSKKLKSFVE-
>tr|B5EDQ8|B5EDQ8_GEOBB RNA polymerase sigma factor RpoD OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rpoD PE=3 SV=1
---------------------MAKKSMDEVK-QLIDLGKEKGFLTYEEVNDLLPPDIVS-DQIDDVMSMFGDMDIEIVDSAQKVKIPKIKM--DLE----
EHEGSEEEV---------E--FEPGT-LGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEVGERDVASVILNTPITVREVVSLGERLRKQQIGAIEISK
DVEEEV------------------------------------------EEDLQ--IDEIKEIDLRMNEIQGVLDNE-K-AAA------KEREALGAEHAE
LKVKMAETLKSLRLKDRHIEKIAQRLKELSCKVDTVMQEITELEKESGAERE-PFLAAFEGAKGG--EAE---FQLNLTLEEGQKLEKRFRSSEARLKKI
EQESGFKASELANALLAIEEGEHKAKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMALPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTSRV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLKSFVE-
>tr|A0A0A8WRY0|A0A0A8WRY0_9DELT RNA polymerase sigma factor RpoD OS=Geobacter sp. OR-1 GN=rpoD PE=3 SV=1
---------------------MAKKSMEEVK-QLIDLGKEKGFLTYDEVNDLLPPDIVS-EQIDDVMSMFGEMDIEIVDSVQKVKIPKVKM--GLE----
ELEGEQEEQ---------E--FEPGA-LGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEDGERDVASVILNTPITVKEILSLGDKLRKAQILPAEISK
EVEEEE------------------------------------------EEDVH--IDEIKELDAQMEGISLQLEGT---LPA------ATRTKLAAELQE
HKLKLAELVRSLRMRDRHIEKIAHRLKELALKVESITREISELEHEAGDISAEELDKLFEKMAKGDAEKK---GLLGMTLEDYQKLEKRLRGVERKLKKV
EQESGFHASELASAIKAIDEGERKAKFAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMSLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTARV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLKSFVE-
>tr|B9M0M6|B9M0M6_GEODF RNA polymerase sigma factor RpoD OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN=rpoD PE=3 SV=1
---------------------MAKKNMDEVK-QLIDLGKEKGFLTYEEVNDLLPPDIVS-EQIDDVMSMFGDMDIEIVDSAQKVKIPKVKL--DLE----
EMEGEQEEV---------E--FEPGT-LGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEVGERDVASVILNTPITVKEVISLGDKLRKFQIAAIEISK
EVEEEE------------------------------------------EEDVQ--IDEIRDHDRRMEEIFLALEQT-T-LPA------KEREALLAEQRD
FKAKLAELLKSLRLKDRHIEKISQRLKELSHKVDKMMHEIADLEKEAGVSSA-DLAAMLGKMAKGDEEKK---VLLGISLEDVQKLEKRFKSAERKLKKI
EQESGFKASELSTALQAIEEGEHKAKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMSLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTSRV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLKSFVE-
>tr|B3E612|B3E612_GEOLS RNA polymerase sigma factor RpoD OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpoD PE=3 SV=1
---------------------MAKKNIDEVK-QLIDIGKEKGFLTFDEVNDILPPDI-A-EQIDDVMGMFGDMDIEIVDSAQKVKIPKIKI--DLE---G
EAEGEAEEV---------E--FEPGA-IGRTSDPVRMYLREMGSVSLLTREGEVEIAKRIEDGDREVAGIILNTPITVKEVLALGEKLRKFQITPSEISK
DIEEDAD-----------------------------------------EEDIQ--IDAIAASEQEINELLTALESA-K-AA-------AKKKELEKSLKE
AKEHLAELLRSLRMKDRHITRVADRLKELSSKVNRVKNELAEVHNVVPPD---KLAELLEKFRADAKGMA---ALLKLSDEDFQKVEKRLKNAARKLTKV
EQESGFKATELSKAIRAIREGEHKARIAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQENGREPSPEEIADRMQLPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVNPLEAVIKANLSEQTSRV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKKLKSFVE-
>tr|C7LRM8|C7LRM8_DESBD RNA polymerase sigma factor RpoD OS=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) GN=rpoD PE=3 SV=1
---------------------MSNIKDVQQIQALIAEGKKKGFLTFDELNKALPSEVNT-EQIEEIIVIFDQLDIDIVDEK-LSRGIEIAE-DDGEEP-E
-KLE-LAED---------E--DGADY-SSRSNDPVRMYLREMGAVGLLDRDGEVYIAKKIEAGELEVMYALVEVPVAVEELVRVGEDLKKGRMKLKDVVK
TIEEDDP-----------------------------------------SEEEMNQLEDVKNIYRKKKPLYTRLDECAT-LD-------KRVFGVQKKIMD
YKEGVVQCLRDIKLEKTLIDRIIETVGDYVRQMHNCRRDLSAYILSLGKSQD-EIFGIFKQLEERINPVA---AALGMTMEELFSFKEMVNGKIEILGKL
QENAMHDVDQLEEILWRIRKGNTDALDAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLVRTSRYLVQELGRDPSPEEIAERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPADEVVNTKLAEQIAQV
LSDLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQQLRSYYE-
>tr|D6SQK9|D6SQK9_9DELT RNA polymerase sigma factor RpoD OS=Desulfonatronospira thiodismutans ASO3-1 GN=rpoD PE=3 SV=1
---------------------MRSIKDVQQIKALIAEGKKKGFLTFDEINKALPSDVTT-EQVEEIISIFDQLDIAIVDGK-AGKTISVSSEDTN-SL-L
-ALN-LDRL---------E--DTAEA-VSRSNDPVRTYLREMGAVGLLDRDGEVVIAKKIESGEMEVLYSLVEVPVAIEELIQVGEDLKKEKIKLKDVVK
TIEEDDP-----------------------------------------TEEEMNQLEEIKQCYKKRRSVYEKLNECAR-LD-------RRVYGQQKKILD
YKYEIVEHLKHIKLEKTLIDSIIERVNDYVRQMHNCQRDLSAYILSLGMSQD-ELHSLLNKLHNRINPVA---AALGMTVDELFSFKELIYGKMEIQERL
QQRCMHNVHELEEILWRINKGNEEALRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLVRTSRYLVQELGRDPSPEEIAERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPADEVVNSKLSEQISKV
LAELTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSSSLKTYYE-
>tr|H2CER8|H2CER8_9LEPT RNA polymerase sigma factor SigA OS=Leptonema illini DSM 21528 GN=sigA PE=3 SV=1
----------------------MAIEDLEEIQKIIAIGRANGEITYDQINEYLPEKIIN-EKIEDVFTLLNRLGINVVEEYTPNLPSDDYIPGNSRN---
D--KEAAPR---------K--KKKESSVSASDDPIKLYLREIGKVSLISGDKEVFLAKRIENGEKIIEETILSSTLLRVNYQKLMPKIRSGRLKVSEVIY
SDKANYLNSGELKELE-KL-----------------------------------E-SKEEKRLNDGRSKVRKYPEGSKKW---------------REYQD
I---VEEAVRRMGVSQKEIQRISQKIKSMVFRIKEIQRHFLSLKAKYQKDVKEIKGYNRFIEK----------IEMGVSIDEVREIIKDIRNNERKLRRM
EQDAGCTIQEILQWGEAITKGEREIAQAKRELIKSNLRLVVSIAKKYANRGMQFFDLIQEGNIGLIKAVDKFEYRKGFKFSTYATWWIRQAITRAISDQA
RTIRVPVHMIEQINKVTRESRMYMQEHGREPTIEELAERLGWPVQRVKAVKSVAKEPISLEVPVGSEEDSELGDFIEDKVVESPLNQTANKLLADQIRSV
LNTLPAREQKVLKMRFGLEDGYTHTLEEVGYVFQVTRERIRQIEAKALRRLRHPSRSKKLKDYLD-
>tr|S3W7T7|S3W7T7_9LEPT RNA polymerase sigma factor SigA OS=Leptospira fainei serovar Hurstbridge str. BUT 6 GN=rpoD PE=3 SV=1
--------------------MMENLQSMPEVQKIIAIGKANSEISYDEINEILPDKILN-EKIDDVFTLLHEMGIEIVEEYTRKTLEPSSAVVLKDDP--
MVPAKPARK---------K--KESASAAGGSEDPIRLYLKEIGKVNLISGETEVFLAKKIEKGEKIIEETILGSSILRANFIKLLPKIRSKKTKVYDLVR
VDKMYAMNAEEAKKLE-EL-----------------------------------K-QEQEKVLQEAQSRIRKYSENSKKF---------------K---E
FKEKIDTAIRELGVSQKEIQKISQKIKSMVFRIKEIDRHFLKIKAQYGYDVRDIKAFNRFIEK----------IEMGVSIDEVREVIKDIRNNERKLRRM
EQEAGSSVQEIKDWGEKIIKGEREIAQAKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQA
RTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNEEIAERLGWPVQKVKAVKNVAREPISLEIPVGSEEDSELGDFIEDKDVESPVNSAASSILAEQIRQV
LHTLPAREQKVIRMRFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLRDYID-
>tr|B2V7P9|B2V7P9_SULSY RNA polymerase sigma factor SigA OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=sigA PE=3 SV=1
-------------------MINL--HDRDDVRTLINLARE-GYVTYAEISTYVEEEFFSDENIESLIEYLNELNIDVRDDEKIKSEDED-----------
------GID------------LSDDDVWNKADDPVKLYLREMGKIPLLKRDEEIKYSMEIERGRKKVFRGLLRTSFLTERLLDEWAKVIDGKARVHDILN
LDEPEVKDEEET--S---ESEG------NYD-----------------KITAD-----FIKKGLELAKLYRDLIEKEKKYLETG-SLEDK----------
-KEFVWLNI-KFTKLDKI-----------ADELKELYTKLRKNEKDYEKRIKIISKIHPDIDLMLEKNPEILK-LHGFS-GRYEILRTETLKLKDEIEEI
KQKIGTIP-EFDHVLDLIQLGRNEINNVKQVLVKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKYDYKKGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLLRISRTLVQELGREPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQALRLQLDEV
LSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRHPHRAKYLKPFIE-
>tr|O67464|O67464_AQUAE RNA polymerase sigma factor SigA OS=Aquifex aeolicus (strain VF5) GN=rpoD PE=3 SV=1
----------------------M--LGRESVKALIEMGKE-GYVTYDEINEVLEEDVTSE-LFEELIDILHRMNIQVVESKEEYEE--------------
------VVS------------GS-LTSSSRDGDPVKLYLREMGKIPLLKREEEIYYARQIEIGRKIMRRGLMRTSFLVEKILDDWAKLCNGKLKIQEVMD
LVEYENDDD------------D------RFD-----------------EFKRF-----FIEKGYELAKAYRNLLDVREEYIKNP-SEESR----------
-KKYLYMKI-KYAKFERV-----------TEEIIKIYKEYARKRKDLNARIRKLKALYKDPDYFALTDENLQK-VKNIP-EKVLNLINEYNSLKREVQRI
QNLIGVFPEELPKVMKIIEQGRKKVVQAKQVMIQSNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKIIKASKKLFQENGREPTPEEIAEYLDIPVEKVKKVMKFSQEPISLETPIGDDDDTFLKDFIEDKSIPNPEEQVTRKLLREQLQKV
LSTLSEKEREILMYRYGLVDGTEYTLEQVGKMFNVTRERIRQIENKALRKLRHPARAKYLKDFEF-
>tr|C0QRZ3|C0QRZ3_PERMH RNA polymerase sigma factor SigA OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=sigA PE=3 SV=1
-----------------------MMHERDDVRKVIMLAKEKGYVTYKELSEIIDEDLLL-DELEQLIEYLNELNIDVIEEAKPE--EFSG----------
---ESDYLG---------I--NFSDDAWAKTDDPVKLYLKEMGKIPLLTRDEEIKLAKDIERGRKKVFRGLLRTSFLAERLLDEWAKVADGRMKVKDIIN
IDSNEYDTEDESYDEA--E-----------------------------------IGLTLAH--RELRDLEQAIIENPDDV------------ELKKEFIE
KHAKVNRFIKSLNI-------KFTKLDKIADELKELYMKLKRKEKDLNKRIKRLQKIDPDVEKLLDDPEI-L-KINGFSFGRFEILRTETLKLQEEIEEL
KEMIGTVPTEFDHVINIIQEGRKEVNETKQKIVQSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFDYKKGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESHLGDFIEDKTVMSPEQHVLRQALRQQLEEV
LSTLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLRHPHRAKYLRPFCE-
>tr|M1RF87|M1RF87_9AQUI RNA polymerase sigma factor SigA OS=Hydrogenobaculum sp. HO GN=sigA PE=3 SV=1
----------------------M--GKAKGKDQLLEIGKE-GYVTYDDINEYVSEDLVED-ELESLFDILSEKGIQILEDEAEAAIHHE-----------
------IVS------------ASIVEADLKNNDSVRYYLKEMGKIALLGRADEIEHAKYIEMGRKQLRRGLLRTSFLVDMVLRYWAKVCDGKMRSQEILD
MQEEHTDYD------------E------EAE-----------------HVDSV-----FIEKGIELAKKYKTVIEKRTLFLTYK-DKKTK----------
-AEYLKINI-KFSRYEKI-----------ADEFIKLYKDYKSKLNSLTIQKRRFEAIHPNVEELLDKNKELLN-KKHMP-HTFEISRSNYLALQREIEDI
ERRLGVLP-ELNKIINIIEQGRKRVKESKDIMVKSNLRLVVSIAKKYINRGLHFLDLIQEGNMGLMKAVDKYDYKKGFKFSTYATWWIKQAITRAIADQA
KTIRIPVHMIETINKISKVSKKLFQEYGREPSPEEIAKALNMSPEKVRKILKSIQEPISLETPIGDDEDTHLKDFIEDSSISNPEEATARRLLREQIEKI
INTLSDKEREVIMYRFGLVDGIEHTLEQVGAMFNLTRERIRQIESKAIRKIRHPSRAKYLKDFEI-
>tr|A0A0Q1C3M4|A0A0Q1C3M4_9BACT RNA polymerase subunit sigma OS=Candidatus Cloacimonas sp. SDB GN=APR54_03900 PE=4 SV=1
-------------------MQ----SYNECIKKLIDLGVKQNLLTFKQINNILPNNPIYDKI-DDIINELVDAGIELIDETQKRVTKKTI----------
KK-TK-TKK---------------FQNKRYYDDPVRMYLGEMGRVPLLDREGEVRIAKKIESGQRYINKYEFMSGSTLREMENFLHRYKEKRVKVDQIFK
IEYGTWMDKSQEAKL----------------------------------------INEFEQVIKEAKVIFEELGEILDNSEYDE--NGEV----------
ADQEVIIFN-RLNYNEKLLKRMVYRIRSLADRIKDSHKTIRQLS--------RIRKYS----------IDEICVRTGIEPDVFVETLRKIKNARRKIRRV
ELETKMTAREMIELLAEIERGEKMKERSKNEMIEANVRLVVSIAKRYNNRGLDFLDLIQEGNTGLMRAVEKYDYRKGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIESINKVKRASRKLLQELGREPYPEEIAVKLDLPPEKIKSILAITKEPVSLDKPIGHDEDSLLGDFIEDKGTISPERMAERTLLKKQVDDI
LKTLTPREERVIRLRFGIDDGYHRTLEEVGNIFSVTRERIRQIEDKALRKLRHPTRSSILMKFID-
>tr|C1DV68|C1DV68_SULAA RNA polymerase sigma factor SigA OS=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=sigA PE=3 SV=1
-------------------MINL--QERDDVRTLINLARE-GYVTYSEISTYVDEEFFSDEHIESLIEYLNELNIDVRDDEKIKEEDDD-----------
------GID------------F-DDDVWSKADDPVKLYLREMGKIPLLKREEEIKYAMEIERGRKKVFRGLLRTSFLTERLLDEWAKVVDGKLRVQDLLN
VEETEEKV-DEL--S---DGEE------NYD-----------------KITSD-----FIKKGLELAKLYRDLLEKEKIYLETK-TLEAK----------
-REFVWLNI-KFTKLDKI-----------ADELKELYTKLRKNEKDYEKRIKIISKIHPDLDLMLEKYPEILK-LNGFS-GRYEILRTETLRLKNEIEDI
KAKIGTIP-EFDHVLDIIQQGRNEINNVKQILVKANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKYDYKRGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRVARSMVQELGREPTPEEIAKKVGMPAEKVKKILRTSQEPISLETPIGTDEETHLGDFIEDKSVLSPEAHMLKNALRMQLDEV
LSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRHPHRAKYLKPFIE-
>tr|F0JFP5|F0JFP5_DESDE RNA polymerase sigma factor RpoD OS=Desulfovibrio desulfuricans ND132 GN=rpoD PE=3 SV=1
---------------------MSNIKEIQQIKALIAEGKKKGFLTYEELSKALPSDYNS-DQLEEIHAIFDQMDIALVDSDDSDKKLTDDDDD--K----
-ELEFDDAD---------D--DSSEY-ASRSTDPVRMYLREMGAVPLLDREGEVVIAKKIENGEMDVLYSLVEVPVAVEELISVGEDLEDGRIKLKDVVK
TIEEDDP-----------------------------------------SEDEMNQLAEVKKLYHKKKKIYEKLDYCAC-LD-------KRVYGVQQEILS
YKEEIVTRLRDIKLEKTLIDRIIETVNDYVRQMHNCQRDLSAYVLSVGKTKA-EIEELFQQVDARINPVA---ASLGMTVEEFFSFKEMLAGKLEIMHRL
QDKCCHSVHDLEEVLWRIKSGNQTAMQAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKATAPAEEVVSTKLSEQIASV
LSDLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSALLRSYFE-
>tr|C6BSX0|C6BSX0_DESAD RNA polymerase sigma factor RpoD OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rpoD PE
---------------------MSNIKDIQAIKTLISEGKKQGFLTFEQLGKALPAEFNK-DQLDDVIKIFDQLNIAIVNTPEDGKKIMDAGVDNDD----
-DIDLTESE---------E--ESVDY-VSRSTDPVRMYLREMGAVGLLDREGEVVIAKKIENGEMDVLYALVEIPVAIEELISVGEDLDESRIKLKDVVK
TIEEDDP-----------------------------------------SEDEMNQLDEVKKLYDKKRDLYYKLDDCAT-LE-------KKVAKQQNEIVN
YKTEIVERLRDIKIEKTLIDQIIETVGDYVRQMHNCQRDLSAYILSTGKTQQ-EIKDLFKQIDDRINPVA---ASLGMTVDELFSFKEMISGKMEILVRL
QDKCCHNVHELEEVLWRIKHGNRSAMRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAAAPAEEVVSTKLGEQIATV
LSDLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSALLRSYYE-
>tr|C8X431|C8X431_DESRD RNA polymerase sigma factor RpoD OS=Desulfohalobium retbaense (strain DSM 5692) GN=rpoD PE=3 SV=1
---------------------MSNIKDVQQIKTLIAEGKKKGFLTFDELNKALPNEVNQ-EQIEEIITIFDQLDIAIVDAQ-TGKNLGMVAGDSGGDS-E
-ELE-ITET---------E----EVE-TTRSSDPVRMYLREMGIVPLLDREGEVEIAKKIEDGELEVLYALIEVPVAVEELVGVGDDLQKGTIKLKDVVK
TIEEDDP-----------------------------------------SEDEMNQLEELRKLYKKRVNIYYKLDECAT-LD-------KRVRGVQNKIID
YKHEVVQILRDIKLEKTLIDRVIETLHDYVRQMHNCRRDLSAYVLSVGKTRG-EIEEIFAELDRRLNPVI---AALGMTVEELFSFKEMLAGKMEILQRL
EEKCCHSVTDLEEILWRINRGNYDALRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPQPEEIAERMDYPVEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEAVNSKLAEQISTV
LSELTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQSLRSYYE-
>tr|T2GCE3|T2GCE3_DESGI RNA polymerase sigma factor RpoD OS=Desulfovibrio gigas DSM 1382 = ATCC 19364 GN=rpoD PE=3 SV=1
--------------------MANNLKDIQQIKTLIAKGKVNGFLTFEEVSKALPSEINN-EQIEEIIGIFDQLDIAIVDSEKDGKKMDLAPQESDDEA-G
-QLS-LTED---------E--DGADY-SSRSTDPVRMYLREMGAVPLLDREGEVHIAKKIENGELEVLFALVEVPVAIEEIITVGEDLKLNRMKLKDVVK
TIEEDDP-----------------------------------------SEDEMNQLEEIKTCFKKKRKIYSKLDECAR-TD-------RRVTAVQKEIVC
YKEEVVTRLRDIKLEKTLIDRIIETVGDYVRQMHNCQRDLSAYILSVGKTQV-EIQELFRKLDARINPVA---AALGMTVEEIFSFKEMISGKIEILHRL
QSKCCHNVQDLEEVLWRIRKGSLIAQRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIASV
LADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQVLRSYYE-
>tr|A0A068JMW9|A0A068JMW9_9DELT RNA polymerase sigma factor RpoD OS=Desulfonatronum thiodismutans GN=rpoD PE=3 SV=1
---------------------MSNIKEIQQIKTLIAEGTKKGFLTFEELNKALPSEISN-EQIEEVINIFDQLDITIIDAGKVTKGILTEEIDD--AP-T
-ATGVQFAE---------G--EDAEY-APRGSDPVRMYLREMGAVPLLDREGEVHIAKKIEVGELEVLYALVEVPVVIEELVKIGEDLKQGRIKLKDVVK
TIEEDDP-----------------------------------------SEDQMNQLDEIRAMFKKKRKVYQKIDQCAR-LD-------RRVYGMQMEIVA
FKEEIVASLRDIKLEKTLIDRLIETVEDFVRQMHNCQRDISAYILSVGKNQS-EIKEIFGKLDKRISPVA---AALNMTMDELFSFKEMLAGKMEILERL
REQCQHTVHDLEEVLWRAKRGNIAALAAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDYPLDKVKKVLKIAKEPISLETPIGEEEDSSLGDFIEDKKALAPAEEVVNAKLSEQIAEI
LSELTPREEQVLRKRFGIGEPSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPGRSNVLRSFYD-
>tr|B6WQF4|B6WQF4_9DELT RNA polymerase sigma factor RpoD OS=Desulfovibrio piger ATCC 29098 GN=rpoD PE=3 SV=1
---------------------MSNLKDIQQIQSLIAKGKGMGYLTFDEVNKALPVEMNT-EQFEEIIGIFEQLEIAIVDSEKDGKKISATPTETDDD--G
-SLE-LAED---------E--ESADY-SSRSTDPVRMYLREMGAVPLLDRDGEVVIAKKIEMGEQDVLYALVEVPVAVEELINVGEDLRQNRIKLKDVVK
TIEEDDP-----------------------------------------SEDELNQLDEIKQIFKKKRKIYKKLDDCNT-LD-------RKVTAIQKEIIS
YKEEIVTRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAYILSTGRTQA-EIQEMFTGLEQRINPND---AALKLSVDELFSFKEMIIGKIEILSRL
QEKCCHNVNDLEEVLWRIKRGNTAAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMEYPVEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVINTKLSEQLAAV
LADLTPREEQVLRKRFGIAEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQPLRSYYE-
>tr|A0A0H3AA31|A0A0H3AA31_DESVV RNA polymerase sigma factor RpoD OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rpoD PE=3 SV=1
---------------------MSNIKEIQQIKSLIAKGKVSGFLTFDEVNKALPAEVNT-EQIEEIIGIFDQLDIAIVDSEKDGKKISMSPGESEEEA-G
-GLD-LSDD---------E--ETVDY-SSRSTDPVRMYLREMGSVPLLDRDGEVVIAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVVK
TIEEDDP-----------------------------------------SEDEMNQLEEIRTTFKKKRKVYSKLDECCT-LE-------RRVASVQREIMN
YKEDIVSRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAYILSTGKTQA-EIQALFSGLEARVSPVA---ASLNMTVEELFSFKEMILGKIEILSRL
QDKCCHNVNDLEEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIASV
LADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQTLRSYYE-
>tr|Q1MR05|Q1MR05_LAWIP RNA polymerase sigma factor RpoD OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rpoD PE=3 SV=1
--------------------MGNNVKEIQQIRTLIAKGKAAGFVTFEEVNKAVPIDMNT-EQFEEIIGIFDQLEIVIVDSEKEGKKITVTSPETDGD--N
-CFD-LVDT---------E--DVADF-SSRSTDPVRMYLREMGAVPLLDRDGEVVIAKKVETGEQDVLYALVEVPVAVEELISVGEDLKLNRIKLKDVVK
TIEEDDP-----------------------------------------SEDEMSQLEEIRQIFKKKRKVYLKLDECCT-LE-------RRVAGIQKEILQ
FKEEIVTRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRELSAYLLSTGKTQD-EIKDLFTKLDARLSPRD---AALNMGVDELFSYKEMILGKIEILQRL
QEKCCHNVVDLEEVLWRIKRGNNAAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEFGRDPTPEEIAERMDYPLDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPSEEVVNTKLSEQIASV
LADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQVLRSFYD-
>tr|D8FF29|D8FF29_9DELT RNA polymerase sigma factor RpoD OS=delta proteobacterium NaphS2 GN=rpoD PE=3 SV=1
--------------------MMENKADMVSLKKLINTGKNKGYVTFEELNDDLSEEIISEEQIDDLMMMFEELDIMVIDESTKKKIEKRKKAKKD-----
KQEDKSAAS---------F--DMADS-ASRISDPVKMYLKEMGRISLLTRDGEVEIAKRIEAGEKEALEALLTCGIGVEHIIKLGDRLKDTEVKLKDVIN
DLEDDDA---------------------------------------------GEKIDQIQELNAGIREKRREKAKR-S-CSE------ETRNRLNSQIQE
DQQKILSIVSSFSLEKRQLEKMLESFRELLKIVETADKNVAECMLQAGGKPISYLNRCISQIPDST-DDE---IIINLKKSELLMLKTKADASRRVIRQV
KERTNMTPRELKSELERVERSLEKASRAKSELIQANLRLVVSIAKKYTNRGLMFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLMRTSRYLVQEHGREPTSEEIAEKMEFPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKNILSPGDAVVNFGLAEQTRKV
LTTLTPREEKVLRMRFGIGEKADHTLEEVGRDFSVTRERIRQIEAKALRKLRHPSRSRKLKSFMD-
>tr|D9PI90|D9PI90_9ZZZZ RNA polymerase sigma factor rpoD (Sigma-80) OS=sediment metagenome GN=rpoD PE=3 SV=1
---------------------MANNSDMVNLKRLIDIGKDKGYITYEELNDELPDDVVS-ETIDDLMMMFEELDVMVIDEASKEQIEKSRRIKKR-----
KAVEKESFR---------A--EVADV-ATRVSDPVKMYLKEMGCISLLTREGEVEIAKRIEAGEKEALDALLKCRVGIEYIIELGDLLKKGEIKLKDVIN
DLDDEDS---------------------------------------------GERIGEIQSLYQDSLQLKTQALKK-G-IPA------TKKKRIQTKREN
NRRKVLELISSFKLEKTQLDRMVERLKEMVWRVERAEKDLKEVTSAAGGKPLAFVKKCFTQIPKTK-EAQ---LVLKLRKSDLLALKSKIDAAEKVAKEI
RDRTNMDKEELKKTLELVENQIDRSKLAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEHGREPTPEEIAEKMEFPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKIISPGDAVMNFNLGEQTRKI
LTTLTPREEKVLRMRFGIGEKSDHTLEEVGRDFNVTRERIRQIEAKALRKLRHPSRSKKLRSFLE-
>tr|E1QG39|E1QG39_DESB2 RNA polymerase sigma factor RpoD OS=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) GN=rpoD PE=3 SV=1
--------------------MLKEEKTLADIQMLISKGRSKGFLTYEEINDALDEEV-T-DRMDDMLMVLDEMGIQLVDDEGSLKVKAQDS--SFED--A
EVVEAAEDE---------A--EIPGD-EGRVSDPVKMYLREMGQVSLLTREGEVEIAKRIEKGERQCIDALLECSLCVAEILELGRRLENDELRIRDVVC
DIDDEES-----------------------------------------QQETR--IEKVRGLDERNTATYERLQHR-DPDLD-----AEKRKRLRDEMTK
NRRQIAEELAQVKLDKRQVDQLGEIIRVRLRTIDHCEGVITSAMMETGLPKG-DIGKLAKKVRANACDE----DMCRCDGQRLLAVDESLRVARGRIREV
EMECKMGAPSLRKILDRVGKGQTLAQDAKQELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEFGREPTPEEIAEKMDFPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKVINPADAVISLNLCEQTRKV
LATLTPREEKVLRMRFGIGQKSDHTLEEVGRDFDVTRERIRQIEAKALRKLRHPSRAKKLKAFIE-
>tr|A0A0D2HYG4|A0A0D2HYG4_9DELT RNA polymerase sigma factor RpoD OS=Desulfarculus sp. SPR GN=rpoD PE=3 SV=1
---------------------MLKDNNFAKLQKLISKGRTKGYLTLDEVNDALGSEV-S-ERIDNMLMVLDEMSVDLVEDVSEIKGRLDE----------
DIDDQDSVK---------K--ELLTD-DGKVSDPVKMYLKEMGLVSLLTREGEVEIAKRIEEGERMVISALLESSICVEKIMALGDLLCEGQLQIKNIVC
DIDEEQT-----------------------------------------EEERS--IDKVRCLDNENAKIYEKLANR-KNPVK-----GPERKEMRAFLTS
NRKKISEHLIDLKLDKKQVEQITEILAEHLRGINKADIAVSSVLYESGIPKN-EITKLARKIRAAGKRC----AMCRCTAKRLLELEVHLKEARAEIRQV
ENTCKMSAASLRRLMNRVNKGRTQAKLAKKELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIADKMEYPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKVVSPSDAVVNLNLCEQTRKV
LATLTPREEKVLRMRFGIGQKADHTLEEVGKDFDVTRERIRQIEAKALRKLRHPSRAKKLRAFIE-
>tr|A0A0K9I9I0|A0A0K9I9I0_9DELT RNA polymerase sigma factor RpoD OS=Desulfocarbo indianensis GN=rpoD PE=3 SV=1
---------------------MTKEKKYADLQKLISRGRNKGYLTYEEINKTLSPEV-A-ERMDDMIMVLEEMDIQLVDDEAKLKLKVGDA--DAED---
DVDEDETEG---------T--ELASE-EGRVSDPVKMYLREMGLVSLLTREGEVEIAKRIEKGERMAIGALLESSLGVKEMLHLGEMVEEGAVRIRDVVR
DIDDEES-----------------------------------------AHEER--VDKVRRLDKRNMQSYEKLSKR-DNGIK-----AEERKKLRENLVK
NRRKVSEMLVGLKLEKRQVDQIADAIKARLTAIERSEGLMSTAMMESGLPKA-EITKLARKLRAAGKKV----TMCRCKPERLMELESVMKQCRATIRDV
ENECKMGSKSLRRIVKRVRDGQEMARRAKRELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMDFPLEKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKKVVSPADAVINLNLCEQTRKV
LATLTPREEKVLRMRFGIGQRADHTLEEVGRDFDVTRERIRQIEAKALRKLRHPSRAKKLRAFIE-
>tr|R5LTE3|R5LTE3_9SPIR RNA polymerase sigma factor SigA OS=Brachyspira sp. CAG:700 GN=sigA PE=3 SV=1
-------------------LI----KN-EKIKNLLEKGNENKYLTYKEINNAIDNVD--ADVIDILFQLLNARNIATVEDKKEFDNI-------------
SKSDS-SDK---------F--IHVEEKVGNNDDPIRLYLKEIGKVNLLTHDDEVEFSKKIEAGESEIEGIVLNTHLVVGEVLTTIKNVHLGRVSIHEILE
PPRIYNVSTHEKRKL----------------------------------------ERKYKSFEKEYVVLAEKYLSLDKRIKKITTKKTIQ------NLTK
EQDEIK-LY-KVRLNRMEIDRIAEKLKFYLHRINQIEEYFGKLKKRYYKDIEDFENYYKEIEKGNI-------LVFNINPDAIEAVITSFHNSQVRLADI
YDEVRVDKETLTEWVRKIDSARRHIARAKDHIVKANLRLVIAIAKKYVNRGLHFFDLVQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVTRVLRQYMQQYGREPSIQEIAKALGWPESRVKQVRNVAKDPVSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILQKQIGSI
LGNLPQREQKVIRMRFGLDDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLKATSKKRKLKDFLD-
>tr|A0A0H0UEW8|A0A0H0UEW8_BRAHO RNA polymerase sigma factor SigA OS=Brachyspira hyodysenteriae GN=sigA PE=3 SV=1
-------------------LI----KNNEKIRKLLEKGNTNKYLTFKEINGAIDNMD--TDVMDILFQLLAARKIVIVEDKREFESL-------------
NKIDD-AAK---------F--IHVEDKVGNNDDPIRLYLKEIGKVSLLTHDDEVDYSKKIESGESEIENIILNTHLVVGEVLNTIKNVQIGKVSIHEILE
PPRIYNVSTQEKRKL----------------------------------------ERKYKNFEKEYVALAEKYLSLDKRIKKITTQKTIK------ALTK
EQEEVK-LS-KVRLNRMEIDRIAEKLKFYLHRINQIEEYFEKLKKRYYKEISDFENYYKEIESGNI-------LVFNITPEAIEAVITSFHKAQVRMADI
YDEVRIDKETLVEWVRKIDSSRRKIAQAKDHIVKANLRLVIAIAKKYVNRGLHFFDLVQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVQRVLRQYMQQHGREPSIQEIAKALSWPESRVKSVRNVAKDPVSLNAPIGDEEDTILGELIEDKEFESPQNITTFKILRKQIDSI
LDSLPDREQKVIRMRFGLVDGYSHTLEEVGYVFKVTRERIRQIEAKAIRRLRAQSKKKELKDFLD-
>tr|A0A068EZ06|A0A068EZ06_9LEPT RNA polymerase sigma factor SigA OS=Leptospira sp. GIMC2001:Bairam-Ali GN=sigA PE=3 SV=1
--------------------MIENLQEMPEVQKIIALGKANREVSYDEINEILPDKILN-EKIDDVFTLLHELGIEVVEDYTKEAVEEAIQPEKVHRE-K
EEKE-KVVK---------K---KKEPAGGGSEDPIRLYLKEIGKVSLISGETEVFLAKRIEKGEKIIEETILGSSILRQNFAKLIPKIKSKKIKVYELVK
VDKLYALNQDEAEKLE-KN-----------------------------------D-QQDEKVFNEATNRIRKYSENSKKF---------------R---E
LKERIDEAIRNIGVSQKEIQKISQKIKSMVFRIKEIEKHFLKIKAKYGHDVREIKGFNRFIEK----------IEMDVDIDEVREVIKDIRNNERKLRRM
EQEAGSPVHEIKEWGERIIKGEREISQAKKELVRANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQA
RTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNEEIAERLGWPVGKVKAVKNVAREPISLEIPVGSEEDSELGDFIEDKDVETPVNAAASSILAEQIRQV
LQTLPAREQKVIRMRFGLDDGYAQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKRLKDYID-
>tr|K5BP10|K5BP10_LEPME RNA polymerase sigma factor SigA OS=Leptospira meyeri serovar Hardjo str. Went 5 GN=rpoD PE=3 SV=1
---------------------MENLASLPEVQKIISIGKANREVSYDEINEILPDKILN-EKIDDVFTLLHEMGIEIVEEYSKKSLEESSSLTTTKEE--
ETKEKPARK---------K---RESSVSSSSEDPIRLYLKEIGKVSLISGETEVFLAKRIEKGEKIIEETILSSSILRQNFAKLIPKIKSKKIKVYDLVK
VDKMYALNQEQADKLE-KV-----------------------------------E-QQDEKVLNESQNRIRKYSENSKKF---------------K---E
LKEKIDEAIRKIGVSQKEIQKISQKIKSMVFRVKEIEKHFLKIKAKYGHDVREIKALNRFIEK----------IEMGCDIDEVREVIKDIRNNERKLRRM
EQEAGSPVGEIKDWGEKIIKGEREIAQAKRELVRANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIRAVDKFEYKKGYKFSTYATWWIRQAITRAISDQA
RTIRVPVHMIEQVNKVIRETRLFVQEFGRDPSNDEIAERLGWPVQKVKAVKNVAREPISLEIPVGSEEDSELGDFIEDKEVISPLNSAASSILSEQIRQV
LQTLPAREQKVIRMRFGLDDGYAQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID-
>tr|F3Z2Y9|F3Z2Y9_DESAF RNA polymerase sigma factor RpoD OS=Desulfovibrio africanus str. Walvis Bay GN=rpoD PE=3 SV=1
---------------------MSNLKEIQQIKTLIAQGKQKGFLTFKELNSALPSEVNN-EQIEEIISIFDQLEIAIVDSEKEGKKLQILSADSESEE-D
SVIEIAGND---------E--DAADY-ASRSTDPVRMYLREMGSVPLLDREGEVVIAKKIESGELDVLYALVEVPVAVEELVQVGKDLKDSRIKLKDVVK
TIEEDDP-----------------------------------------SEDEMNQLDEIKASFKKKRKIYTKLDQCAT-LD-------RRVFSLQMEIVS
FKEEVVQKLREIKLEKTLIDRVIETVEDYVRQMHNCQRDLAAYIMSTGKTQS-EIRDLFRRVDDRLNPLN---AALGLTVEEFFSYKEMLAGKMEILVRL
QEKCCHQVSELEEVLWRIRRGNENASRAKRELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPIEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLSEQIGKV
LSDLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQILRSYYE-
>tr|G7Q5Z8|G7Q5Z8_9DELT RNA polymerase sigma factor RpoD OS=Desulfovibrio sp. FW1012B GN=rpoD PE=3 SV=1
---------------------MSNLKEIQQIKSLIVKGKQKGFLTFDEVNKALPSEVNN-EQLEEVIAIFDQLDINLVDTDKDGRKIEVASTEPEE---A
-DLE-LTES---------E--DTLDY-SSRSTDPVRMYLREMGAVPLLDREGEVVIAKKIENGEMDVLYALVEVPVAVEELIQVGEDLKIGRIKLKDVVK
TIEEDDP-----------------------------------------SEDEMNQLDEVKASFRKKRKIYSKLDQCAC-LD-------RRVAGIQKEIMV
FKEEIVVRLRDIKLEKTLIDRIIEIVEDYVRQMHNCQRDLSAYILSVGKSQS-EIQEMFAQLDSRINPVV---AALGLTVEELFSFKEMLSAKMEILDRL
QEKCCHHVHELEEVLWRIKRGNTAAQRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKALAPAEEVVNTKLGEQIGKV
LSDLTPREEQVLRKRFGLGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQHLRSYYE-
>tr|S7TZ01|S7TZ01_9DELT RNA polymerase sigma factor RpoD OS=Desulfovibrio sp. X2 GN=rpoD PE=3 SV=1
---------------------MNNLKEIQQIQGLIAQGKKKGFLTFEELGNALPSEVNT-EQIEEIISIFDQLDIAIVDSEKEATKKDPMAPVDLGEE-D
SIIDIE-ES---------E--DAADY-AARSTDPVRMYLREMGAVPLLDREGEVVIAKKIESGEMDVLFALVEVPIAVEELVQVGQDLKNGRIKLKDVVK
TIEEDDP-----------------------------------------SEDEMNQLEEIKSVFKKKRKIYQKLDSCAT-LG-------RRMTAVQHEIMG
FKDEIVIRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLAAYIMSTGKTQA-EIQEIFRAVDARMNPVK---AALGLTVEEFFSYKEMLAGKMEILVRL
QDKCCHNVLDLEEVLWRIKRGNDAAMRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIAKV
LADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSAILKSYYE-
>tr|A0A081C5E8|A0A081C5E8_9BACT RNA polymerase sigma factor SigA OS=bacterium UASB270 GN=sigA PE=3 SV=1
---------------------MNDALKIPEVRKLITLGKEKGYLNYDEINDYLPADVVA-EQLDDIFVLLDKMDIEITDKQKHVESERLTLTVKDKAKAK
RP-V-K------------E--TVKTEDIGKTDDPVRMYLREMGTVPLLTREGEIEIAKRIEKGRSEVIKAVTSTRIAVREVINLAKRLQANRIKIREVIQ
VSDGDE-IRENRVDEI--E-------------------------------------VELKKSEKEMAKIENIL--STGTVDS------QKRRKLEVIIRE
EMDKCSALLQDISLHPSQVQRVVAKIKGLVKRIERGESEIAECEKQMGMTVGELKKYSRRLKR--EEEER-K-IETGISLEMVEEYERIIRNGRRKIRRV
ELEACMSANRLKKILQRIEVGEARSENAKSELVQANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLIKTSRYLVQELGRKPTTTEIAEKMNLPIEKVRKVMKIAQEPISLETPIGKEEDSHLGDFIEDKGALAPSDAVVGMDLKEQTRQV
LSTLTYREEKVLRMRFGIGENNNAGLSLESAKVDFVREKISDIETFSLRKMAPSNKLGFLHGEAK-
>tr|C1F1D9|C1F1D9_ACIC5 RNA polymerase sigma factor SigA OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 / NBRC 15755 / NCIMB 13
-------------------RLALDDKYEEDLQKLIDAGKEKGYLTYNEVNDLIPGDMT-PEDLDDLMTTIGTQGIDILEGSPKLG---------------
DEDSDDVEL---------D--LTPGT-LEKTNDPVRMYLREMGTVPLLTREGEVEIAKRIERGQLRVMKAVSRSPIVIREIIALGEDLRRGVRSVKEVVI
FDEEEITEEVL------------------------------------------ARIDGIVKHQKKIQALEEKMQAA---KSK-----VKEQRKLRWLIAR
EMVFITRIVRDLKYTNQERKRLLDKVNKTVDSMRTLERQIRS---------------------LD-KYDQ---S----SEELKKEYRRQQKNCKTDLEKL
EEEAGLSIADLKRTQREIIQGDMDAEQAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQELGREPTSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDSQAVSPSEAVISVNLKEYTSQV
LRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSRSRKLRAFVD-
>tr|A0A062XZY7|A0A062XZY7_9BACT RNA polymerase sigma factor SigA OS=Thermoanaerobaculum aquaticum GN=sigA PE=3 SV=1
-----------------------MEEKYPELPRLLQLGKERGYVLVDEILEILPEEVAAPEELDEIYLRFSENDIEVIESQEKAATFEEEA---------
ASNPEAAAA---------P--LL-EEELERTNDPVRMYLREMGTVKLLDKEGEVAIAKRIEAGEAKVFCALASSPKILELFLRANEAARRDRRLNRDLLA
GLSVKLDERSL------------------------------------------GRFAKIHELDTASKEVKEQLRKA---KKG-----SKKAQELEAKLDQ
LAGDISVLVRSTDFTTQTRNRLLAFLGEVERQFSIPIQTIRK---------------------DE-KL-------TERNAERRAFYEERIERYRQELARL
EAEYGVPYEEFKRVVAQVREGERETDEAKQELIVANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLTRCQRQLVQELGREPTSEEIAERMEIPVSKVRKIMKIAQEPISLETPIGEEEDSHLGDFVEDSSVVSPIDAVIAASLRKQAEAV
LRTLTPREAEVLRRRFGIGDGTEHTLEEVGKAFNVTRERIRQIESKALRKLRHPSRAKHLKPYLD-
>tr|Q02AB6|Q02AB6_SOLUE RNA polymerase sigma factor SigA OS=Solibacter usitatus (strain Ellin6076) GN=sigA PE=3 SV=1
---------------------MALDDKYDGLQRLVQMGKEKGYVLYDEVSEVLPGDIN-GNDLDDVLAGLDVAGIEILEEPKDFE---------------
ESSEELIDL---------E--LPAGLGGEKINDPVRMYLREMGTVPLLTREGEVEIARRIERGQNTVLKSLFRAPLVVQEIIGMGEEVINDTLSARDVIQ
IADPMLTDEMVE-----------------------------------------EFTEEIARYYKKTLQCRQKLMAIP--RGMK----PKQYRRQLWEVAR
LIVRTARLCRAVKFQSPVIRHLIDRLRSAVEELRPVENDLAK---------------------TQ-KLET---WP---RAEAIKDLRKEQRSYGQKLQQM
EEQYGASAAELRRTLEIITQAHQEAETAKKELIEANLRLVVSIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWVRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQMVQELGREPSNEELAKRLQLPVSKVRKVLRVAQEPISLETPIGEEEESHLGDFIVDQNGISPSDAVINLNLREQTAQV
LKTLTPREEKIIKMRFGLEDGSEHTLEEVGQNFAVTRERIRQIEAKALRKLRHPSRSHRLRAFLE-
>tr|E6QN15|E6QN15_9ZZZZ RNA polymerase sigma factor rpoD (Sigma-80) OS=mine drainage metagenome GN=rpoD PE=3 SV=1
-------------------ALAIDDKFEDDITSLIDAGKEKGYLTYGDVNDMLPDDMH-ADDLDDLITTIGTQGIDLLDG-PKFG---------------
PEEGEDVEL---------D--LTPGA-MEKTNDPVRMYLREMGTVPLLTREGEVEIAKRIERGQMRVMKSLSRSPVVIREIVALGEDLKRGVRNVKEVVT
FDEEELTEDIV------------------------------------------ARIDAMVRHLKKIALLEEKLPTLN--VKTK----AKEARRTRWTIAR
EKVLVSRIVRELKYTGQERKRLLDKVNKTVEIMRSLERQIKS---------------------LD-KHDA---S----SEDLKKEYRRQQKNCRADLERL
ELEAGVTISDLRRTQREMIQGDMDAEKAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQELGREPSSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDRQAVSPSEAVISVNLKEYTSQV
LRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSRSRKLRAFVE-
>tr|E8X489|E8X489_GRATM RNA polymerase sigma factor SigA OS=Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9) GN=sigA PE=3 SV=1
-------------------MAEELDKYED---EIVEVGKEKGYLTFGEVNDLLPGDIT-PDDLDDLLTTINTQGIELGGDEDRRG-------------EP
GEESEDVEL---------D--LSPGT-LEKTNDPVRMYLREMGTVPLLTREGEVEIAKRIERGQIRVMKAISRSPIVIREIVALGEDLRRGVRNIKEIVT
FDEEELTEEIL------------------------------------------ARIDVIVKHQKKVTALEEKLEQAGALKDAKA--KTKEVRKVRWLIGR
EHVYVNRVIRELKYTNAEKKRLLDKVNKTVDAMRTLERQIKS---------------------LE-KFES---S----SEELKKEYKRQQKNCKLDLERV
EQDAGISIPDLKRTQREMIQGDMDAEKAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQELGREASSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDRMAVSPADAVISVNLKEYTSQV
LRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSRSRKLKAFVD-
>tr|E8UZS4|E8UZS4_TERSS RNA polymerase sigma factor SigA OS=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) GN=sigA PE=3 SV=1
-------------------MAEEIEKYEEDVDRIVDTGKEKGYLTYGEVNDLLPGDIT-PDDLDDLLTTINTQGIDVLGGEDKFD-------------YE
QEESDDVEL---------D--LTPGQ-LEKTNDPVRMYLREMGTVPLLTREGEVEIAKRIERGQLRVMKAISRSSIVIREIMGLGEDLKRGVRNVKEVVT
FDEEELTEEVL------------------------------------------ARIDLLVTHYKKAESLQDRITN-PVGKDAKA--KAKDLRKHRWMAGR
ELVKVTRIVRELKYTNGEKKRLLDKVNKTVDAMRTLERQIKQ---------------------LD-KFEA---S----SEELKKEYKRQQKNCKVDLDRL
EVDAGLTVEDLKRTQREMIQGDMDAEKAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQELGREASSEEIARRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDRMAVSPSDAVISVNLKEYTSQV
LRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSRSRKLKAFVD-
>tr|G8NXL8|G8NXL8_GRAMM RNA polymerase sigma factor SigA OS=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) GN=sigA PE=3 SV=1
-------------------MADELDKYEEDVDRIIDTGKEKGYLTYGEVNDLLPGDIT-PDELDDLMTTINTQGIEVLSGEGRRA-------------DN
GEEGDDVEL---------D--LSPGT-LEKTNDPVRMYLREMGTVPLLTREGEVEIAKRIERGQLRVMKAISRSPIVIREITGLGEDLKRGVRNIKEVVV
FDEEELTEEIL------------------------------------------ARIDELIKHQKKAADFGARVAE-PHGKDAKA--KEKDKRKSRWLMGR
EHVFVNRIVRELKYTNGEKKRLLDKVNKTVDSMRTLERQIRS---------------------LE-KFEA---S----SEELKKEYKRQQKNCRVDLQRV
EADSGISLDDLKRTQREMIQGDMDAEKAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQELGREASSEEIAKRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDRMAVSPSDAVISVNLKEYTSQV
LRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSRSRKLKAFVD-
>tr|Q1IIK4|Q1IIK4_KORVE RNA polymerase sigma factor SigA OS=Koribacter versatilis (strain Ellin345) GN=sigA PE=3 SV=1
--------------------MA-LDDKYDDIKKLIDTGKEKGYLTYSEVNDLIPHDVH-PDDLDDLLTTIGTQGIDVLEGPGKLP-------------YD
EAGEEEMEL---------D--LTPGA-LEKTNDPVRMYLREMGTVPLLTREGEVEIAKRIERGQLRVLKAISRSPIVIRDIIAIGEDLKRGVRSIKEIVI
FDEEEITDEVL------------------------------------------ARIDELNKHYKKSSQLEQKLEEIAPGGVKEIKKKARDVRKVRWTLGR
ELVSISRIIRKINFTNVERKRLIDRVSKTVENLRILERQVSH---------------------LE-RANE---T----SEETKKELKKQSRTLKGDLERM
EQEAGVSIAELKRTQREIIQGDMDAEQAKKELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQELGREPSSEEIAKRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDRSMVSPAEAVINVNLKDQTAQV
LRTLTAREEKVIKMRFGLEDGSEHTLEEVGQSFAVTRERIRQIEAKALRKLRHPSRSRKLRAFLD-
>tr|A0A0B6X232|A0A0B6X232_9BACT RNA polymerase sigma factor SigA OS=Pyrinomonas methylaliphatogenes GN=sigA PE=3 SV=1
-------------------LAIHDKDQDDVMQRLLELGGEKKYLTFDDLNRELPDSIV-PDDIEDVLQKLEGSNIAVSDDERLLE-------------DD
EPIEEDLEL---------D--LSAGA-LDKTNDPVRLYLREMGVVPLLTREGEVAIAKRIERGQIKTQKAIARSPIAVKELLKIGEELEAGSLHIRDVVN
FAEQAEFTGQEV-----------------------------------------EYIENIRKLFKQGLKEWEKLRAEQK-VSRGK--KTKKLLRLRRKVAR
IRLEIAQEIKQLNLTEKAKQRLIEAIRKVHDEVRAAEQEIEE---------------------YT-KLNK---KR---KPEEEKEYRRHINAAKRRLQQI
EAEHYVSPVEIKRSYQAITTGEQETAQAKKELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRALVQELGREPTSEEIAKKMDIPVSKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDKSIQNPADAVVAANLREITDEV
LKTLTPREEKVIKMRFGLGNGSEHTLEEVGQHFAVTRERIRQIEAKALRKLRHPSRSRKLKAFLE-
>tr|W7PVU4|W7PVU4_9GAMM RNA polymerase sigma factor RpoD OS=Halomonas sp. BC04 GN=rpoD PE=3 SV=1
---------------------------------MIARGKEQGYLTYAEVNDHLPEDIAD-DQVEDIIGMINDMGISVVEEAPDEDTLMMS--DH---S--
-AAEEAVAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGTREVMSALAYLPGAVESILDAYDATQDAPGRLSDLFS
G---FIDPDEGIPGVA-EAEV-----------------EG---DE---AEAEEET--EAKARFEQIRQQNELVRAAMEAHGR------HSPE-----ARA
ELTRLAELFSPIKLVPKHFERLVNQVRISVEQVRTQEKAVMQMFKKARVPRKTFIKAFPGNESRQ-WLNDFIS-----NADRLEAMRGDILRSQRRIAFE
EDMVQLAVPELKEINRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMLLPVDLATGEGLIEATRNV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEPLRSFLD-
>tr|A0A0C7DV56|A0A0C7DV56_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Portiera aleyrodidarum GN=rpoD PE=3 SV=1
--------------------------------------------------------------------MFKEKGINLLDKLSEEDTLRYKN---------
-NIEETEEL---------V--SWNKESDIRNNDPVRIYMREMGNIELLNRKGEIEIAKKIEEGTKEIMAAIVYLPGAVDYIIEIYDL-IKSGENFYDLFT
G---FINLEKK------------------------DI---------KNSNNKTYQ--LTNIKFEKIRKQNKKVKKTMFKYGY------KSKE-----TKI
ELKLLSNLFSQIKLLPKHFECLLNKVKFSINNIRSQEKLILKYMKYGNYSRKEFIDSFIGNEANL-WLDKFIY-----KKNSIKKYRSEIVKAQKKILLE
QQQINLSVGELKEINKKFLIGEAKAHKAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYRKGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINRLNRLSRKLLQERGREPTPEELSNRLEISEKKIRKIMKIAKEPISIETPIGEDEDYYLSDFIEDNITASPIEAATDEGLVEATRNV
LSELTAREAKVLRMRFGIDMNTDHTLEEVGKQFEVTRERIRQIEAKALRKLRHPSRSEALRSFIE-
>tr|J3X9J5|J3X9J5_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Portiera aleyrodidarum BT-B-HRs GN=rpoD PE=3 SV=1
----------------------MFEILELNIKELINKGKEQGFLINSEICELFD------EKVDEIICIVKDKGINIIDKISEVENIYKNVEDKNIC---
-----------------------KKENDIRHFDPVRIYMREMGKIDLLDRKGEIEIAKKIEEGTKEIMAALVYLPGAVDYVLEIYDLIIDTEVNFYDLFT
GFMYFKKVKKEEKLKA--K--E------TYN---------------G-H----ILFEKIRK-------QNKQVKINVLTY-----------GYKSKEAKM
ELKLLSKYFSKIKFLPKHFEGLLSKVRLSIKNIRFHENLILKYMVKMVKLRKEIINSFIGNEANL-WLDK---ILEKTISRKN--YRSNILKSQKKILLE
QQQINLSVVELKEINRKLLIGEYKAHKAKQELIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINRLKRLSRKMLQERGIEPTPEELSNRLEISENKIRKILKIAKEPVSIETPIGEDEDYYLSDVIEDNITASPIDAATDEGLVEATRNV
LSELTAREAKVLRMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEALRSFLE-
>tr|M4X4S1|M4X4S1_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Portiera aleyrodidarum TV GN=rpoD PE=3 SV=1
----------------------MLEILELNIKELINKGKEQGFLIYSEIFDLFDDDMTN-EKIEDIICIFKEKGINIIDKISEED----KN---------
-NIEETSER---------N--SWNKENDIRNNDPVRIYMREMGNIELLNRKGEIEIAKKIEEGTKEIMAAIVYLPGAVDYIIEIYDL-IISEGKISELFT
G---FMNLKKE------------------------DK---------KKLNS-ENY--LTKKIFEKIRKQNKKVKITILTYGY------ESKE-----TKI
ELKFLSKVFSQIKLLPKHFECLLSKVRLSIKNIRIQEKVILKYMKYGQVSRKEFINSFIGNEANI-WLDKFIY-----NKNIIKKYRSEILKAQKKILLE
QQQINLSVVELKEINRKLLIGEYKAHKAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINRLKRLSRKMLQERGIEPTPEELSNRLEISEKKIRKIMKIAKEPISIETPIGDDEDYYLSDVIEDNITASPIEAATDEGLVEATRNV
LSELTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEALRSFIE-
>tr|K0C0Y3|K0C0Y3_CYCSP RNA polymerase sigma factor RpoD OS=Cycloclasticus sp. (strain P1) GN=rpoD PE=3 SV=1
-------------------DKEQQKEQTSKIKALISKGHEQGYLTYAEVNDHLPQDV-E-ERIEEIITMISDMGISVSEEAPESDTV--SDGTV-AQT--
-AAEVAAVA---------L--ATVDKELGRTTDPVRMYMREMGTVGLLTRQGELDIAKRIEEGQNEMLAAIVRYPAVVDRFFDVFEKIKSDELRLADYIP
D---FVDLEDDYDYTQ-PAAA----------------------------DESAPE--DVEVRINEIAAKYKECTKVIKKEGY------ASEK-----TQK
EFDELALLFMALKFTPRFFTLLSNEMKQCVELVRAQEKTIIDICKQAKMPRKLFIAGFVKNESDI-WLEEHLK-----TVAVIKENFHEIKKAQVRLANV
ESESSLVTTEIKDINRRLSIGEAKMRRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQEKGREALPEELAIEMEMPEDKVRKVLKIAKEPISMGTPIGDDEDSSLGDFIEDANAVSPVDSATIESLRESTQDV
LAGLTAREAKVIRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRTEHLRSFID-
>tr|K6H0C0|K6H0C0_9GAMM RNA polymerase sigma factor RpoD OS=SAR86 cluster bacterium SAR86E GN=rpoD PE=3 SV=1
--------------------MDKLKKQGSRIAELIEKGREQGYLTYADVNDHLPEDISD-DQVDEIIGMINDLGLQVHETAPDADTLMLSE--S-SDD--
-ALEQAAEA---------L--AAVENETGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEEGMRDLLDASVHYPGIVEHIIDFYEQVKSEDKKLSELLT
G---FLEEMEEVPSAG-PGSE--------------------------AEESDEEV--EVQRRMTNLKRQFNKTHKVVESKGR------HSKE-----AKA
EFAKLGLIFQFLKFSPKMFEDLAFFARSDLAEIRLHEKRIQFLFKSARIPRKDFIAMYKDNITKV-WVDSLMT-----NKKSLEHIKPDVVIAQKAIKGV
EERVGLSIKDIKEINRAMSMGETKMRRAKKDMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMMQDMGREPTPEELSKELDMPEDKVRKVLKIAKEPISMETPIGDDEDSNLGDFIEDTVIHSPLKNATEGSLHFATDDV
LSSLTAREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSSHLKNFLD-
>tr|D8K839|D8K839_NITWC RNA polymerase sigma factor RpoD OS=Nitrosococcus watsoni (strain C-113) GN=rpoD PE=3 SV=1
-------------------LKIMEQDRQSQLKLLIARGKDRGYLSYSEVNDHLPEEVID-EQIEDIITMFNDMGISVHEDMAEADALAIMD-TA-VA---
-AAEEAAAA---------L--VSVDGEFARTSDPVRMYMREMGSVELLTREGEISIAKRIEEGMRQVYTALSRFPGSVAELLRQYEKVEVGEIRLVDVIS
G---FQESEEADLKES-AAEE---------------------------GNAEEEN--RVQEYFAQLRKLYERCQAADHKGN--------DGA-----LEE
L----SEYFLQLKLMPRLSQRLIENLRRVVAEIRVLERSIMKIANSAQMPRKDFLSSFQKQETNL-WVEKHIR-----ASSVLRKQGDAIQKAQEKLIAL
EQRAGMSITQIKEINRSLSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPDELAERVEMPKDKVRKVLKIAREPISMETPIGDDEDSHLGDFVEDAAVISPPDSAIFSGLRETTQLI
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|D5C470|D5C470_NITHN RNA polymerase sigma factor RpoD OS=Nitrosococcus halophilus (strain Nc4) GN=rpoD PE=3 SV=1
----------------------MEQDRQSQLKLLIARGKDRGYLSYSEVNDHLPDDVID-EQIEDIITMFNDMGISVHEDMAEADALAIMD-TA-VA---
-AAEEAAAA---------L--VSVDGEFARTSDPVRMYMREMGSVELLTREGEIRIAKRIEEGMRQVHTALSLFPGSVAELLRQYERVEAGDARLADMIS
G---FHEPEEEDIKEA-VAEE---------------------------DSEEEEN--RAREQFVQLRELYRLRQEAASKDD--------GKA-----LAE
LSEAMSECFLRFKLVPRLSLQLIEGLRAVVAGIRVLERTIMQIANEAHMPRQDFLSSFQGQETNL-WVEKHIR-----ASSVLRKKGEAIRQAQEKLIAL
EQGAGMSVAEIKEANRSLSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPDELAERVDMPKDKVRKVLKIAKEPISMETPIGDDEDSHLGDFVEDAEVVSPPDAAIFSGLRETTQQI
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|B9L8S3|B9L8S3_NAUPA RNA polymerase sigma factor RpoD OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rpoD PE=3 SV=1
---------------------------MALPKELEKLKSNNGIVTYETIVNLLPKVPTK--QSKEILKAAKEYNIKLMTAAEVAKLKNLEDVVK------
KEELAEDIL---------K--DKELLEWSRSDSPVRMYLREMGHIPLLDKDEEIEIFRRIQLGEEIILDAICSIPFLIDLVLKYKEPLLNRERRVKELFK
NFVEEEEVDD--------------------E-----------------DSKEG--QKKISIREKRINELFKNLEKAKKEWEKVLDEYDQVINAKDMDELE
RLHKILALN-ELGYTSKL-----------INEIVKTVETALKGDKDFEKELKKKEY---KLPLFNKLHKEILSELEDIAEHTMVNVYMDIKKLVEAKKAS
ENMFGMEPEKLEVILEQLKRGKKITTEAKEKMARANLRLVVSIAKKYTNRGLPFLDLIQEGNIGLMKAIDKFEFEKGYKFSTYATWWIRQAISRAIADQA
RTVRIPIHMIENINQINKIVRKYVQEEGKEPSLEVIAKEMKMPIEKVKQILKISKEPVSLEAPVGEEEDGKFGDFIEDKTFTNPYEEVVNEDLRKHIEEI
LEQLNERERAVIKMRFGLMDKSERTLEEIGKALNVTRERVRQIESSAIKKLRHPNIGKFLKNYIE-
>tr|G0A535|G0A535_METMM RNA polymerase sigma factor RpoD OS=Methylomonas methanica (strain MC09) GN=rpoD PE=3 SV=1
---------------------MNQEQQQSQLKQLIAKGKAQGYLTYAEVNDHLPSDIID-EQIDDIIGMINDMGIQVYEVAPDDDDSLITADTV-VSA--
-VAE--VAA---------L--ASVDSEFGRTTDPVRLYMREMGSVELLTREQELKIAKRIEEGQRQVVAAVARSGFIVDSFIETFSGVADSSTRLGDLVQ
G---FVDYSDVDEVEV-DEVE----------------------------DADDEE--EVKEKVDLLKKSLKTAMAAVKKHGY------GHDK-----SEK
AFDALSEIFSQFKWTPQYLKRMTSVADELIAAIREQERQVMDACKRTKMPRRDFINAFTENEAQL-WLDQFIQ-----DADALNSNREKIQSAQQKLADI
EAQHGLSIANLKQICRNISLGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQILQEMGREATPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSKMLSPVESATIAGLRESTQNV
LAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCFLD-
>tr|V5BQZ9|V5BQZ9_9GAMM RNA polymerase sigma factor RpoD OS=Methyloglobulus morosus KoM1 GN=rpoD PE=3 SV=1
----------------------MNQDQQSQLRQLIAKGKAQGYLTYAEVNDHLPSDISD-EQIEEFIGTINDLGIQVYETAPDDDS-LITDSAA-VTA--
-AEE--VAA---------L--ASVDSEFGRTTDPVRMYMREMGSVELLTRADELKIAKRIEEGHHQLVKAISRSCVVVEDVLQSFDSISESGFRLTDMIS
G---FVDLSEPEDLLS-SPAA---------------------------A-SPEDD--EVKEKIDQLREQLKTASAAINKYGY------VSEQ-----TDQ
AFDALANLFMEFKWTSQYLKKLSAIIPDGVAIVRTQERLIHDIFKKAKMPRQDFIAAYTDKEISS-WLDHYLD-----DSPVLKLHEKDLRKAQKILSDC
EVQYGLTISGLKDINRRISIGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQELGREATPEELAVRMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSRVLSPVEAATIAGLRESTQNV
LAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCFLD-
>tr|G3IUZ8|G3IUZ8_9GAMM RNA polymerase sigma factor RpoD OS=Methylobacter tundripaludum SV96 GN=rpoD PE=3 SV=1
---------------------MNQEQQQSQLKQLIAKGKVQGYLTYAEVNDHLPSDIVD-EQIEDIIGMINDMGIQVYEVAPDEDS-LITDSAA-VTT--
-AEE--VAA---------L--ASVDSEFGRTTDPVRMYMREMGSVELLTRADELKIAKRIEEGQQQLVKAIARSCIVVEDFLQSFDNISGGGIRLTDLIS
G---FVDLSEPEDFVT-ALPV----------------------------TPAEEE--EVKEKVEALRKQLKTAAAAIKKHGY------SNDK-----TDK
EFEALADLFMEFKWTPQYLKKLTAIIPNGVTAVREQEKLIMDICNYAKMPRKEFIASFPEHETSS-WFDQYLN-----ASETLKEREKEVRKAQKILADI
EAEYGLTISGLKDINRRMSIGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQELGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDAKVLSPVEAATIAGLRESTQNV
LAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCFLD-
>tr|H8GMC6|H8GMC6_METAL RNA polymerase sigma factor RpoD OS=Methylomicrobium album BG8 GN=rpoD PE=3 SV=1
---------------------MNQEQQQSQIKQLIARGKIQGFLTYAEINDHLPSDIVD-EQIDDFIGMINDMGIQVYEVAPDEDS-LITDAAA-VTT--
-AEE--VAA---------L--ASVDSEFGRTTDPVRMYMREMGSVELLTRADELKIAKRIEEGQQQLVKALARSCVVVDDFLQSYNSISAGGIRLNDLIT
G---FADYSETDDLSV-AQTG---------------------------TAPADEE--EVSEKVERLRVQLQVATNACKKYGY------ASAE-----TEQ
AFDVLADLFMEFKWTPQYLKKMSGIIPEGVASVREQERIILDICKHAKMPRPEFIAMFTEDESNP-WLDRCLE-----EAEALKPHEKELRKAIKALGEI
EAKFGLTINGLKDINRRMSIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQELGREATPEELAVRMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSRVLSPVESATIAGLRESTQNV
LAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCFLD-
>tr|A0A0A6R479|A0A0A6R479_9GAMM RNA polymerase sigma factor RpoD OS=Methylomonas denitrificans GN=rpoD PE=3 SV=1
---------------------MNQEQQQSQLKQLIAKGKAQGYLTYAEVNDHLPSDIID-EQIDDIIGMINDMGIQVYEVAPDDDDSLITSDAV-VTA--
-VAE--VAA---------L--ASVDSEFGRTTDPVRLYMREMGSVELLTREEELKIAKRIEEGQRQVVGAIARSGFIVESFIDAFDSVQVSGVRLNDLVL
G---FVDLTEIEDIDV-SGIE----------------------------DAEE-E--EVKQKVDLLRKALKAATTSVKKHGY------GHDK-----TEK
LFDAIDEIFCEFKWTPQYLKKMVSISEELIAAIREEERFILDVCKKAKMPRKDFINAFAENEANL-WLDQFIA-----TAEVFSGHREQIRAAQQRLAEI
ESRFGLSIAVLKSICRSISLGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQILQELGREATPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSKMLSPVESATIAGLRESTQNV
LAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCFLD-
>tr|G4SUH0|G4SUH0_META2 RNA polymerase sigma factor RpoD OS=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) GN=rpoD P
---------------------MNQEQQQSQLKQLIAKGKAQGYLTYAEVNDHLPSDIAD-EQIEDIIGMINDMGIQVYEDAPDEDS-LITDGAA-VTG--
-DDE--VAA---------L--ASVDSEFGRTTDPVRMYMREMGSVELLNREDELKIAKRIEEGQQQVVRAISRSCKVVDEFIRDFDSISDGGIRLTDLVS
G---FVDLSEPETVFS-SQAA---------------------------EDADEDE--DVKEKVEVLRKLHKSAAAAIKKHGY------GDPK-----VNE
KLDELAESFIEFKWAPQYFKRLTATVSEAVALIREKERLIADLCNEAKMTRKEFIIAMTGHETDY-WLVQYLR-----SNQVIAENEQEVKKAQSVLADI
ASTYGLSVSDIKDINRRMSIGEAKVRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQELGREATPEELAERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDAKVLSPIESATIAGLRESTQSV
LAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCFLD-
>tr|A0A0K2G9K6|A0A0K2G9K6_9BACT RNA polymerase sigma factor SigA OS=Nitrospira moscoviensis GN=rpoD PE=3 SV=1
---------------------MPKQELLGEVKKLISIGKEKGFLTYDELNNTLPAEVVS-DQFGSIMTMFGEMDIEIVDAPDGERTSKRSENGDAGDD-D
ADDENEKAI---------D--LTPGA-LSRTDDPVRLYLKEMGSVALLSREGEIEIAKRIEEGKKDIAAVIYSMPMTIEFVLALRDQLKNQKIDVREIVP
VQETEED-----------------------------------------ERDYEELLNAVRKVSLALKALAEKGKHV-G-SDP------VKQKKFKKQFEL
VRQQVVDKIESVNLHGVLKDRMVQRVRDLNVQIRAAEREVISCQRKIGVPGE-AGAELLKKMCRTQDFLA---VKTGVSEEALQEIKKVYLAAKAKIRQL
ETEEAVPAEEIKDAVKHLDVAEEKVKRGKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRHLVQKLGREPLPEEIAERMDLPLDKVRKILKIAREPISLETPIGEEEDSHLGDFIEDKKAISPLEAAIRYDLQRQINSA
LETLTPREEKVLRKRFGIGEATDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKKLRSFVE-
>tr|D8PBZ3|D8PBZ3_9BACT RNA polymerase sigma factor SigA OS=Nitrospira defluvii GN=rpoD PE=3 SV=1
---------------------MPKQELLGEVKKLINLGKEKGFLTYDDLNSTLPADVVS-DQFSTIMTMFGEMDIEIVESAETERAPKAAEGEEAIEE-E
ASEDNEKEI---------D--LTPGA-LSRTDDPVRLYLKEMGSVALLSREGEIEIAKRIEEGKKDIATVVYGLPMTLEFVLNLRDQLKNGKIDVREIVP
VVETEED-----------------------------------------EKDYEELLNAVRKVSASLKDLYDKARHV-G-ADP------EKQKKLRKQIDT
VRGQVVDKMESVNLHGVLKDRMTQRVRDLNLLFRQAEREVTSCQRRLGVGGE-AGAELLRRLCRTKDLLA---VKTSLSEEVLQDIKKHYQAAKGRIRQL
ETEEAISAEEIKDAVKHLDVAEEKVKRGKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRHLVQKLGREPTPEEIAERMDLPLDKVRKILKIAREPISLETPIGEEEDSHLGDFIEDKKAVSPLEAAIRYDLQRQINGA
LETLTPREEKVLRKRFGIGEATDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKKLRSFVE-
>tr|V2Q9I6|V2Q9I6_9BACT RNA polymerase sigma factor SigA OS=Mucispirillum schaedleri ASF457 GN=sigA PE=3 SV=1
---------------------MSKKIKLPEVKQLITLGKEKGFLTFDEINDALPEDAAT-DFLDEIITLLSQLKIDVIDNKSKKGNIFPTNVVIDDE-DD
GL-SSIDGE---------Y--QEDGEEILSTDDPVRLYLKEMGNIPLLNREDEVNVAKEIKKGQRKVIKAILSFPSTAAKFMEFSEGVKNDTMRLKDIID
IEEDDIEMEQLQEDFE--E-----------------------EAVKE-DNKEAQLIDEIVS--REDITLSEEYKRNAKNMSA------DEQKKKKSELEA
SIEELTDKLLDIKV-------NFMTINEISQDIKINYDAVQDSMYELNKVAKILKVDTLYMFSIT--EEI-T-IAHGMREKEINTIINKHTQTLEKINTH
YNNIGIEKEEFEQIYESLLEGEYVTDSAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFDYSKGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKMMKVTRNLQQDLGREPTPEEISEKMDIPVEKIKKVMKIAKEPVSLETPIGEDEDSSLGDFIEDKSAKNPSDEVTYLKLKEHTRNI
LDTLSPREASVLRLRFGIDCDSDHTLEEVGKKFTVTRERIRQIEAKALRKLRHPTRSRIMRTFTD-
>tr|B0VJJ6|B0VJJ6_CLOAI RNA polymerase sigma factor SigA OS=Cloacimonas acidaminovorans (strain Evry) GN=rpoD PE=3 SV=1
-------------------MI----TYNECLKKLVELGKESGYITFKQINEILPPSPFFDKV-DDIIFDLSQDGIEIIDETEKRITKSGA----------
RKPST-AKK---------------FKSKRYYDDPVRMYLREMGRVPLLDREGEVRVAKKIETYQKMINQNVFKCGSTLREMYNFLHRYRERRVRLDQIFK
VDISTWIDKNQDAKI----------------------------------------IEKFKEILKENEEKFEKVGNILDNCEFDD--TGTS----------
SRQEEITFM-QLSYNDKLIKRMVYRIRSLVERIEESYESINNLT--------RIKRYT----------IDEICVLTGIDPNVFVETLRKIKNARRKIRRV
ELETKMTGNKLIFLLREIDRAERNKERAQNEMIEANVRLVISIAKHYNNRGLEFLDLIQEGNTGLMRAVEKYDYRKGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIESINKINRTSRRLMQKLGREPYPEEISEVLDIPVEKIKNIMSISKEPVSLDKPIGHSEDSILGDFIEDRTIISPERLAERSLLKKQVDEV
LKTLTPREERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALKKLRHPSRAAILQQFLD-
>tr|D3PEC3|D3PEC3_DEFDS RNA polymerase sigma factor SigA OS=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) GN=sigA PE=
---------------------MSKKIKTPEVKQLIALGKEKGFLTVDEINEILPKEIL-PEFLDEIFMLLAQLKIDVIDNNSKNAVITD---------DG
MD----DTS---------S--STASEERIGVDDPVRLYLREMGNIPLLSREEEVEVAKRIEEGQKKVIRSVLLFPSTASEIMSLAEKINEGTLRIKDIID
IGDELDFDEIDY---------D-------------------------------NQLNDIVSKLKENIKLTKKLKSN---NIS-----IDNILSIKDQINR
TVDEITDKLVEIKINYKKITEIANEIKRSYEEISDCENDIKKFLNLIGIKDISDISQLNNEEIF--MID------SSFNIRDKNRLKDKYKELKHKLDGF
YKKLGFTKNELEVIYNSLLEGEYEAEKAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYRRGYKFSTYATWWIRQSITRAIADQA
RTIRIPVHMIETINKMIRTIRQLQIELGKEPTPEEIAERMDIPVEKVKKVLKIAKEPVSLETPIGEDEDSSLGDFIEDQSAKNPLDEVVYEKLKEHTRAI
LDTLTPREASVLRLRFGIDCDSDHTLEEVGRRFNVTRERIRQIEAKALRKLRHPTRSRILKTFLE-
>tr|F8E654|F8E654_FLESM RNA polymerase sigma factor SigA OS=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) GN=sigA PE=3 SV=1
---------------------MPKKIKIPEVKQLISMGKEKGFVTFDEINELLSEDIIS-ELIDDVLMLLAQLKIDVLDNNNKKNSLLSHSNIEEE----
---SSESGE---------E--EVSVEAAISTDDPVRLYLREMGNIPLLSREEEIEVAKEIEEGQRKVIKSVLSFPTTAKQIMEIAENIKMGEMKIKDIID
VDDDLDTESDEIVDYE--E-----------------------EEIKV-DEREIKILEDIVA--KENIALTKKIKQS--DMSI------DNILTYKQKIQD
SVSDIAEKLLEIKV-------NYNSICKIAQNIKKMYEDISNAEEDLGKIFKIIKLDSSELHYDPDMVLV-N-KITGLSAKDRNMLSKKFTNAYDKICSQ
YQKIGLDKSEMQLVYESLLEGEYETELAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYQRGYKFSTYATWWIRQAITRAIADQA
KTIRIPVHMIETINKMIKVSRQLQVETGREPTPDEISEKMDIPVEKVKKVLKIAKEPVSLETPIGEDEDSNLGDFIEDKKALNPTDEVTYLKLQEHTQHI
LDTLSPREASVLRLRFGIDCASDHTLEEVGKKFNVTRERIRQIEAKALRKLRHPTRSRILRTFSE-
>tr|E4TJT0|E4TJT0_CALNY RNA polymerase sigma factor SigA OS=Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) GN=sigA PE=3 SV=1
---------------------MSKKVKLPDLKPLIALGKEKGFLTFDEINEMIPEDVLL-EILEEILVRLKQLKIDVIDNRNSAAPVIAAPIIEEEE-ME
DV-ESEEII---------M--DENLEEGLSFDDPVKLYLREMGNIPLLSREEETEVAKEIENGQREVIINTLSFIYAAEKFLTIVEDIKNGNFKLKDLVD
FEDINVEDEIDID-E---------------------------EELKR-DERDLKILDDTCL--SEAIKICKKIRTMKKQE---------RIEATKKQMNE
ILDDVARQLLKIKV-------NYSLICNLAKEISTTYEELTQYEKDLKKIVDIFKYREEDIDYIHP--KK-L-ACKHLSQRDIQNLIAKFKSIQLKAQKN
IKLLGYSRSEVDLLHEMLTNNMTKTERYKTKLIQSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKMMKISRQLQVDLGREPTPEEIAEKMDVPVEKVKKVLRIAKEPVSLETPIGEDEDSSLGDFIEDKKSKNPLDEVVYLKLSEHTKQI
LDTLSPREASVLRLRFGIDCSSDHTLEEVGKKFNVTRERIRQIEAKALRKLRHPTRSRILKTFGE-
>tr|B9XH89|B9XH89_PEDPL RNA polymerase sigma factor SigA OS=Pedosphaera parvula (strain Ellin514) GN=sigA PE=3 SV=1
-------------------TTKAGVDLTEKVKELVLLAKEQGHLTYDDINDALPDTVVTD-DLDQVYTKLNNLEIEIVDAAEVDRVKQPEAE--------
--------E---------Q--EDEKGRLDILDDPVRMYLRQMGKVPLLTREQEVAICKRIEEAENEQRRIIYSFGFAAKEHIALAEKLISEPERFDRVIV
DKKIDSRDR--HLKA----------------------------------------LRQLVKKVREMDQE-------------------------------
-VDEKYKVFAEFKKLDKKLQDTFPKFYYKQKVIEEMILVA--------------QNIHDKIQASLD-----LE------KA--RKSDQQQAILKSEWQKI
EEFARMPNNEYLKNFEALNQYAAKAHQAKTEMAEANLRLVISIGKKYTNRGLAFLDIIQEGNMGLMKGVEKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIEIIGKLMRAQKQLLQEFGREATPEEIADEMQISVERVKSILKMAQQPISMQASVGDSDDATFGDFIEDKSAENPSDMTSYSLLKDKLNDV
LATLTERERRIVELRFGLVDGYARTLEEVGKQYKVTRERIRQIEAKALRKLRHPTRVRHLKGFLE-
>tr|F5SYM1|F5SYM1_9GAMM RNA polymerase sigma factor RpoD OS=Methylophaga aminisulfidivorans MP GN=rpoD PE=3 SV=1
-----------------------MKDQQSRVKELIALGKERGYLTYGEINDHLPEDLVD-DQVEDIVSMFSDLGIMVHEDGMDTDEMERLA-EA-VSS--
-SDEEAAAV---------L--ASSDGEFGRTTDPVRMYMREMGSVELLTREGEIVIAKRIEAGLRESLMMLSTYPACISSFLELYDAVEAGEMRLNELIK
G---FVSAEELVEEHD-DLSD----------------DDD---DDDSV--SDDDD--EARVRFEALKESFNAYLKA---E---------GEE-----AEA
SREQASAQFMEFKLTPKTLAYLNDLMSETVNEIRNQERIIMDIVEQARMNRRDFIDSFQGNESNV-WADKHIR-----ASSTIKKHHDEIIAAQSVLAEI
AESRGMSISEIKEISRQMSIAEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVARQMLQEMGREPTPDELAERVDMPEDKVRKVLKISKEPISMETPIGDDEDSHLGDFVEDVNVISPSDSAIIEGLREATQGV
LNGLTEREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDQLRSFLD-
>tr|A0A0F9NC46|A0A0F9NC46_9ZZZZ Uncharacterized protein OS=marine sediment metagenome GN=LCGC14_0969640 PE=3 SV=1
-----------------------MKDQQSRIKALITLGKERGYLTYGEINDHLPENLVD-DQIEDIIGMFSDLGIMVHEDGMDTDEMERLA-EA-ASN--
-SADEAAAV---------L--SSSDGEFGRTTDPVRMYMREMGSVELLTREGEIVIAKRIEAGLRESLLMLTTYPPCISKFLSLYEAVEAGEMRLNEVIK
G---FILPEDPDAEPV-VAGP----------------ADD---D------DDDES--EAKEHFTALRAAVNQAEKA---S---------EDE-----LEA
ANTLVTELFMEFKLTPKTLNLLNGLMRDTVAIIRKQERTISKIIDEARMERRDFIESFMGNETNL-WTDKHIR-----ASSTIKKNLDQIINAQTKLAEV
SSDRGMEIPEIKEISRQMTISEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRIARQMLQEMGREPTPQELAERVDMPEDKVRKVLKISKEPISMETPIGDDEDSHLGDFVEDTNVMSPQDSAMIEGLREATQGI
LSGLTEREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDQLRSFLD-
>tr|M7PU62|M7PU62_9GAMM RNA polymerase sigma factor RpoD OS=Methylophaga lonarensis MPL GN=rpoD PE=3 SV=1
-----------------------MKDQQSRVKELIALGKERGYLTYGEINDHLPEDLVD-DQVEDIVSMFSDLGIMVHEDGMDTDEMERLA-EA-AAS--
-SDEEAAAV---------L--ASSDGEFGRTTDPVRMYMREMGSVELLTREGEIVIAKRIEAGLRESLQMLSTYPPCIKTFLEMFDAVEAEELRINEVVR
G---FVMPEELIAESD-DDEP----------------EDD---DDDDVSD--DDD--EARVRFAALNEAYKNILNS---D---------GDA-----MVE
ARELASNLFMEFKLAPKALATLNDLMTDTIMDIRQQEKIIMDIVEQAGMNRRDFIDSFQGNESNL-WTDKHVR-----ASSTIKKHLDTIINAQTRLAEI
ADERGLSIAEIKEISRQMSIAEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVARQMLQEMGREPTPEELAERVEMPEDKVRKVLKISKEPISMETPIGDDEDSHLGDFVEDVNVMSPADSAIIEGLREATQGV
LNGLTEREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDQLRSFLD-
>tr|I1YJR9|I1YJR9_METFJ RNA polymerase sigma factor RpoD OS=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) GN=rpoD PE=3 SV=1
-----------------------MKDQQSRVKELITLGKERGYLTYGEINDHLPEDLVD-DQVEDIVSMFSDLGIMVHEDGMDTDEMERLA-EA-VAS--
-SDDEAAAV---------L--ASSDGEFGRTTDPVRMYMREMGSVELLTREGEIVIAKRIEAGLRESLVMLSTYPPCIAAFLTLFDAVEAGELRLNDLIR
G---FVQPEEELASQD-DDED----------------DDD---DDDDVSD-DDDD--EARERFTALKEAYLDVLSA---E---------DDE-----LIA
AREQASNLFMEFRLTPKTLVTLNSLMTDTIDAIRKQEKIIMDIVEDARMNRRDFIDSFQGNESNL-WADKFIR-----ASSTIKKHHDDILDAQKQLADI
AGERGLSISEIKEIARQMSIAEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVARQMLQEMGREPTPDELAERVEMPEDKVRKVLKISKEPISMETPIGDDEDSHLGDFVEDVNVMSPADSAIIEGLREATQGV
LNGLTEREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDQLRSFLD-
>tr|S7TLZ5|S7TLZ5_9DELT RNA polymerase sigma factor RpoD OS=Desulfovibrio sp. X2 GN=rpoD PE=3 SV=1
---------------------MHTAGDIRRLQDIIARARDTGRVTLDEIRAALPGAPAA-GQMEEIVSLLEQWGIVVVDSERDDGKNVA-GSDAMPLLDL
GA-GETADE---------S--EDAADYAARSTDPVRMYLREMGAVPLLDREGEVVIAKKIESGEMDVLFALVEVPIAVEELVQVGQDLKNGRIKLKDVVK
TIEEDDPSEDE---MN--Q------------------------------------LEEIKSVFKKKRKIYQKL--DSCATLG------RRMTAVQHEIMG
FKDEIVIRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLAAYIMSTGKTQAEIQEIFRAVDA--DMNPV---AALGLTVEEFFSYKEMLAGKMEILVRL
QDKCCHNVLDLEEVLWRIKRGNDAAMRAKQELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQELGRDPSPEEIAERMDYPLEKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEMEQTEFRTIVGTA
LQGLTAREEFVLRMRYGIGYATEHTLEEVGCILHVTRERIRQIEAKALRKLRHPARAGILRAWLQ-
>tr|A0A0K8QND1|A0A0K8QND1_9GAMM RNA polymerase sigma factor RpoD OS=Mizugakiibacter sediminis GN=rpoD PE=3 SV=1
--------------------MENNPQQQSEIKQLITKGREQGYLTYAEVNDHLPDDIVD-EQIEDIISMINGMGIEVHEVAPDTDLLMPD-APA-ASE--
-ATEEAVAM---------L--TAVDAEVGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLNQVQSALASFPWAIQLLLEEYDQHLDGKRRLSEILA
G---FNDIEQPDATQL-AEPL----------------EED---EDEEAGEEASPG--EVKRRMDELRTLYAKFQKLAEKHDS------ADRK-----VMK
LREQMAEAFLKLKLPSALIDGFVKKLRDVVNAIRQHEREIMEICKQARMPRKEFLKLFPSNETNL-WADELGR-----KSPGIKSHKEALVAEQQKLVDI
ERALHLPLTDIKEINRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREPTPDELAKVMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNVDSPIDSATTTGLMETVREV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|H2FVF8|H2FVF8_OCESG RNA polymerase sigma factor RpoD OS=Oceanimonas sp. (strain GK1) GN=rpoD PE=3 SV=1
----------------------MEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVD-DQIEDIIQMINDMGIQVVENAPDADDLMMSE-TT------
-AAEAAAQA---------L--ASVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSSVSEYPEAITSLLDQFDRFEAGDIKLSDIIS
G---FVDLEEADDV------------------SDKDLDE----DEDED--EESDT--VAREKFGQLRTQYEAVRDTIAAKGR------TSDE-----AAE
QITALADLFRQFRLVPKQFDRLVNSMRDMMERVRVQERIIMKLCEQCKMPKKTFVQAFAHHESEQ-WFNAQLA-----ASARLQDVSEDVLRAIGKLKTV
EEETGLTISQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAHRMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLSLPADSATSESLRNATKDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|C4LB62|C4LB62_TOLAT RNA polymerase sigma factor RpoD OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rpoD PE=3 SV=1
-------------------MSSMEQTPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVD-DQIEDIIQMINDMGIQVVENVPDADDLLLTENNA------
-AAEAAAQV---------L--ASVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSSVAEYPEAITYLLDQFDRFEAGHIRLGDIIS
G---FVS--EDDDL------------------DEETLDD-----EDEDD-DDAEE--VAREKFSALRTQYEITRDAIKANGR------DSDL-----AKV
QILELANVFKEFRLVPKQFDRLVNSMREMMERVRVQERLILRYCEYAKMPKKNFVTAFTNNESSN-WFEFAKS-----SSTALANMDEDVQRSIQKLQQV
EQETGLSIAQIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPNPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLALPADAATSESLKAATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|M4XAL8|M4XAL8_PSEDE RNA polymerase sigma factor RpoD OS=Pseudomonas denitrificans ATCC 13867 GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISD-EQVEDIIRMINDMGINVFETAPDADALLLAET--------
-AAEEAAAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAQFPGTVDGILEEYSRVTAEGGRLSDILS
G---YIDPDDGSL-PA--EEV----------------EEE---DEESDSDSDDEG--EAARRFGAVSEQLDKAKKALKKHGR------SSKQ-----ASE
ELLALAELFMPIKLVPKQFDALVAKVRDALDSVRRQERAIMQLCRDARMPRADFLRQFPGHETDT-WVDSVLK-----GAEAIERLKDDIQRNQQKLADL
ETSSQLTVSEIKDVNRAMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVATSESLKEATREV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLD-
>tr|U2ZTN1|U2ZTN1_PSEAC RNA polymerase sigma factor RpoD OS=Pseudomonas alcaligenes NBRC 14159 GN=rpoD PE=3 SV=1
----------------------MSKEQQSRLKELITRGREQGYLTYAEVNDHLPEDISD-EQVEDIIRMINDMGINVFESAPDADALLLAEA--------
-AAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMGAISLFPGTVDSILAEYQRVTTEGGRLSDVLS
G---YIDPDDGSL-PA--EEV-----------------DE----EEEESDSDDEG--EAARRFGAVAEQLDKARKALKKHGR------GSKQ-----AEK
EQQALAELFMPIKLVPKQFDALVERVRGSLEQVRAQERAIMQLCRDARMPRADFLKLFPGNEVAT-WAAGLAK-----GAEAIGNLLADIQRCQEKMAAI
EADAGLVIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVATVESLKEATREV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|A0A0B5C9H6|A0A0B5C9H6_9PSED RNA polymerase sigma factor RpoD OS=Pseudomonas balearica DSM 6083 GN=rpoD PE=3 SV=1
--------------------MSGKAQQQSRLKELIQRGREQGYLTYAEVNDHLPEDISD-EQVEDIIRMINDMGINVFETAPDADALLLAEA--------
-AAEEAAAA---------L--AAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAHFPGTVDGILADYDRVVSEGGRLSDILS
G---YIDPDDDGAAAP-QE-V----------------KDD---DEEDEDSDEEEG--VARIRFGAVAEQLAKAQKALKKFGR------GSQQ-----ATD
ELEALAILFMPIKLVPKQYDALVERVRDALARIRAQERAIMQLCRDARMPRADFLREFPNNETNL-WAEAIAS-----GAEAIAARKDDIRACQQKLVDL
EQETGLSVADVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREV
LAGLTAREAKVLRMRFSIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLD-
>tr|A0A0K1WXI3|A0A0K1WXI3_9GAMM RNA polymerase sigma factor RpoD OS=Pseudomonadaceae bacterium D3318 GN=rpoD PE=3 SV=1
---------------------MSSQAQQSRLKELIARGREQGYLTYAEVNDHLPEDISD-EQVEDIIRMINDMGINVFETAPDADALLLAEG--------
-AAEEAAAA---------L--AAVDSELGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEEGIREVMAAIAHFPGTVDGVLADFNRAIEEGTKLTDIFN
G---YIDPDDSIPEPA--TQA----------------DDE---DEDEEEEEEEAT--VAKERFGAIEEQLAQVYKVLKKHKR------GTKA-----ANE
ALALLGELFMPIKLVPKQYDALVETVRESLTNIRSQERAIAQLCRDARMPRADFLKGFPNNETNL-WSDKFAN-----SAEAIAELQEDIRRHQQLLIDI
ETETGLSIAEIKDINRRMSIGEAKARRAKKDMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERMEMSEDRVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVTMQSPIDVATIENLKEATRDV
LEGLTEREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRTFIE-
>tr|R4RRU9|R4RRU9_9GAMM RNA polymerase sigma factor RpoD OS=Halomonas zincidurans GN=rpoD PE=3 SV=1
--------------------MAGN-AQQSRLKELIARGKEQGFLTYAEVNDHLPEDIAD-DQVEDIIGMINDMGINVVEEAPDEDALMMS--DH---S--
-AAEEAVAA---------L--AAVESDVGRTTDPVRMYMREMGTVGLLTREGEIEIAKRIEEGTREVMSALAYLPGAVESILEAYDATQDQPGRLSDLFS
G---FIDPDEGIPGVA-EAEV----------------DGD---DE---DAEEEES--EARARFEQIREQNAAAKAALAKYGP------GAAE-----TLA
EQSRLAELFSPIKLVPKHFERLVNQVRISVEQVRDQEKMILQVCKKAKVPRKTFIKNFPGNESNS-WLDEFLA-----SADKLQAFRGDIQRAQRKIGFE
EELIQLPVGEIKEVNRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMLLPIDMATGEGLIEATRNV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEPLRSFLD-
>tr|R4RPE1|R4RPE1_9GAMM RNA polymerase sigma factor RpoD OS=Halomonas xinjiangensis GN=rpoD PE=3 SV=1
--------------------MAGNAQQQSRLKELIARGKEQGYLTYAEVNDHLPEDIAD-DQVEDIIGMINDMGISVVEVAPDEDTLMMS--DH---S--
-AAEEAVAA---------L--AAVESDVGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGTREVMSSLAYLPGAVDSILDAYDATQDAPGRLSDLFS
G---FIDPDEGIPGVA-EAEE----------------TDG---SDEDDEDDTSSN--EARARFEQIREQNELTKAAIAKHGR------SAPA-----SQE
QQARLAELFSPIKLVPKHFERLVGQVRISVEQVREQEKVIMQVFKRGKVPRKTFIKSFPGNESRA-WMEEFLE-----KRDRLEPFRSDIARAQRKIAFE
EEMVQLDVTELKEVNRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDGSILLPIDSATGEGLIEATRNV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEPLRSFLD-
>tr|A0A0D5IW41|A0A0D5IW41_9BURK RNA polymerase sigma factor OS=Burkholderia dolosa AU0158 GN=AK34_5435 PE=3 SV=1
-------------------GDGVPQRAAADLHALIAAGLSRGFVARGDILDALPDDDATESGIDAVVAMLDELGIAVCDSADADNGWTLDRYFP---P-V
RAWADGVS-------------AAVDLPAPRTTDPVRLYLREMGTAPLLTRDEEFAYAQRLERGRAACVAALCGDPDALDALAAIRDEIAEGRAAASAYVS
FVDDGPRDASRS--NR--AS-----------------AHVARDDAADARPEDAAWRDAVVARLARVGALADGMRAALAS-----------GGTGCAAYRS
HVRDAAALLRTVRLSARALERIGEPLRSRARRQRALRGRLQRMLADVGVPSFAH----AADGDHAGWLASCVDAHPGC-ASTLTRRAAQFVDARAAILRD
AAASALPADATASLDARVGAIERAMQPARIALFDANLRLVVSIAKRYRDRGLPFADLIQEGNIGLLKAIERYDYRRGFRFSTYATWWIRQSVTHALADLG
RTIRVPTHTVDALNKLARLAREHRQRAGSAATPAQLAAHIGEPVDKVRDLLAIVKEPVSADLPVSPDGDLTFIDVAPDTATPSPEDAADATQLRRTIAAA
IERLPQREAMVLKLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRASDALAVLRPFIA-
>tr|A1S3S4|A1S3S4_SHEAM RNA polymerase sigma factor RpoD OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rpoD PE=3 SV=1
-------------------MISMDHTPQSQLKMLLAKGKEQGYLTYAEVNDHLPADMVD-DQIEDIIQMINDMGIRVYEEAPDADEMMMSED--------
-AAEEAAAA---------L--ATVESELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINTVQSSVAEYPQAISMILEQFDQFEADAIRLSDIIS
G---FVDPNEEDV-G---PTA-----------SEEELMDE---DEEEDDSSDDDG--VARERFAALRAAYDNALKVIEVKGR------AHPE-----STR
ALFELGEIFKEFRLVPKQFDRLVKSMREMMDKVRVQERLIMKLCEQAKMPKKNFVKLFTGNETDL-WFNKEIE-----ASADLKLVDEDVQRCRAKLEAI
EVETGLSIESIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKQATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD-
>tr|A3QBL9|A3QBL9_SHELP RNA polymerase sigma factor RpoD OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpoD PE=3 SV=1
-------------------MISMEQTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVD-DQIEDIIQMINDMGIRVYEQAPDADEIMMSED--------
-AAEEAAAA---------L--ATVEAELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDIIS
G---FVDPNAEDM-A---PTA-----------SDDDLEGD---DE---DGDEEDS--EARERFTQLREAHEKALKVIELKGR------EHPE-----ATA
ALFDIGEIFKEFRLVPKQFDRLVKNMREMMDKVRIQERLIMKLCEQAKMPKKNFVKVYTSNESSI-WFNEEIA-----AAEGLEMVAEDVQRCRAKLDAI
ENETGLAIAAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESLKNATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD-
>tr|A0A0M4HDS6|A0A0M4HDS6_9ENTR RNA polymerase sigma factor RpoD OS=Buchnera aphidicola (Aphis glycines) GN=rpoD PE=3 SV=1
----------------------MEQNPKSQLKLLVTHGKEQGYLTYAEVNDHLPEDIID-EQIDDIIQMINDMGIQVVEEAPDADDLILNEINT--D---
-AVEAAAQV---------L--SSVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQSSVSEYPEAITYLLEQYDRIKTGQIKLSDIVT
G---FVDPNVEELS------------------LDELSDD----NE-EDEDNEEDE--LANEKFSALRKQYTNTSNTIKNKNR------KHKD-----ALL
EIYNLSEIFKQFRLVPRQFDHLVNNMRDMMERVRKQERIIMRLCEECRMPRKNFIKIFSGNETNI-WLIKEKS-----LSKKIQKIEEKIFISIKKLSNI
EQETGLKIEEVKDINKRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQETGREPTPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATSESLRSATHDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|W0P0P2|W0P0P2_BUCMP RNA polymerase sigma factor RpoD OS=Buchnera aphidicola str. USDA (Myzus persicae) GN=rpod PE=3 SV=1
---------------------MDQQNPQSQLKLLVTHGKEQGYLTYAEVNDHLPEEIID-EQIDDIIQMINDMGIPVVEEAPDADDLILNEINT--D---
-AVEAATQV---------L--SSVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQCSVSEYPEAITYLLEQYDRIKTGQIRLSDIIT
G---FVDPNAEEIF------------------LDEEQ----------DNQDDNED--LANEKFSELRIQYHNTNNTIKNKKR------THKD-----SLL
EIYHLSEVFKQFRLVPKQFDHLVNNMRNMMERVRKQEKIIMKLCEKCNMPKENFIKIFSGNEVNN-WFIKEQN-----KSKNLIKIKDSVLSSMQKLIEI
EEETGLTIEQVKDINKRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELSEKMLIPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDTTLELPLDSATSESLRSATHDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLD-
>tr|F7WYX8|F7WYX8_9ENTR RNA polymerase sigma factor RpoD OS=Buchnera aphidicola (Cinara tujafilina) GN=rpoD PE=3 SV=1
----------------------MEKKPHSQLKILVSHGKEQGYLTYAEIHDHLPDDIIN-DQIKNIIQMIKDFGIQVVEEARDAGNLILNETP----T--
-AVEVAAQV---------L--SHVETELGRTTDPIRMYMREMGTVELLTREGEIDIAKRIEEGVNQVQSSFSEYPQAIAYLLEQYHKVESGDIKLSEIIS
G---FVDPNIENTL------------------NNSTIKKE---IKTLNVSNDQDE--IAKEKFLQLQTQYYITNYIIKTKNR------THKN-----AIT
AIKELSEIFKQFRLAPKQFDYLVNNIRNILSKIQKKRKKILEVCDICKMPKKNFIQFFKGQETSQ-WFYAAIN-----MSIKLCEFQNDIFKILRELLII
EKKIGLTIEQAKDINKRMSSGEIKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRYMLQEIGREPTPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTNLELPLESATSESLRTITHDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLD-
>tr|A0A0R2WPB5|A0A0R2WPB5_9GAMM RNA polymerase subunit sigma-70 OS=SAR92 bacterium BACL16 MAG-120322-bin99 GN=ABS22_06175 PE=4 SV=1
-------------------MTEKKQNQQSGIKDLIAKGREQGYLTYAEVNDHLPEDIAD-EQVEDIIQMINDMGITVFETAPDAETLLML--SG-DNT--
-AVAEAAAA---------L--ASVESEQHRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGTRELMSAISDWPGTVAAVIAEYDQVEAGERKLTDIIS
G---YLNPMEHVPSAL-AQQQ----------------NDD---DDDDDIEEEEEH--EALQRFTAIRDQLKKTEKAIERYGR------DSDS-----AKK
NIEALGELFKYLKLTPRQFDPLIAKVRLAVEKIRAEERKIMKFSRCGKMPRKDFITLFPGNESNL-WTAGIIS-----AGPKLAEQEIEIHRSQRKLAQV
EKASGMNIAQIKDINRRLTMGEAMARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELAERMEMPEDKIRKVLKIAKEPISMETPIGEDEDASIGDLIEDTTIALPLDEATKHNLTESTRGV
LSSLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFID-
>tr|W2UC48|W2UC48_9GAMM RNA polymerase sigma factor RpoD OS=Gammaproteobacteria bacterium MOLA455 GN=rpoD PE=3 SV=1
-------------------MSDTNQKQQSGIKDLIAKGREQRYLTYAEVNDHLPEDIAD-EQVEDIIQMINDMGITVFETAPDADTLSSL--AS-DNT--
-AAAEAAAA---------L--ASVESEQHRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGTRELMSAVADWPTTVATIIAEYEKVEAGEKKLTDIIS
G---YLNPMEHVPSAL-AQQQ----------------VE---------EEEEEQH--VAFERFDAIRKQLKKTDACIARYGR------NGDA-----SQK
NLEELAELFKFLKLTPRQFDPLIAKVRLAVERVRGEERKIMRLCRLGKMPRKEFIKLFPGNESNM-WTTELAK-----SAERVAEQEVEILRSQRKLAQV
EKLADMNIAQIKDINRRMTMGEAMARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELAERMEMPEDKIRKVLKIAKEPISMETPIGEDEDASIGDLIEDTTIALPLDEATKNNLTESTRGV
LSSLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFID-
>tr|A0A0R2U5M9|A0A0R2U5M9_9GAMM RNA polymerase subunit sigma-70 OS=SAR92 bacterium BACL26 MAG-121220-bin70 GN=ABS24_01705 PE=4 SV=1
-------------------MTQSTDKQQSGIKDLIAKGRDQGYLTYAEVNDHLPEDIAD-EQVEDIIQMINDMGITVYETAPDAETLLMI--SG-DNT--
-AAAEAAAA---------L--ASVESEQHRTTDPVRMYMREMGSVELLTREGEIEIAKRIEEGTRELMSAVAEWPSNVAAVIAQWDIVVSGEKKLTDLIS
G---YLNPMEHVPSAL-AQQQ------------------------GEEEEEEEQH--VATERFEDIRKQLIKAESSIAKTGR------SSDE-----TLQ
QMLELAELFKYLKLTPKQFDPLVTMIRVAVEKIRKEERNIMKLCRFAKMPRSEFIQSFPGNETNL-WTGSLVK-----TSEGITDQEVEILRSQRKLAQV
EKASGLSILQIKDINRRLTIGEAMSRRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMGMPEDKIRKVLKIAKEPISMETPIGEDEDASIGDLIEDNTIAQPIDEATKHNLTESTRDV
LSSLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFID-
>tr|A0A0Q7YFZ3|A0A0Q7YFZ3_9GAMM RNA polymerase subunit sigma-70 OS=Lysobacter sp. Root559 GN=ASD53_11030 PE=4 SV=1
-------------------MANERQPPPSDIKLLISKGLEQGYLTYAEVNDHLPDDLVD-EQIEDIIGMINGMGIEVHEVAPDAETLLLADGNT-GNR--
-AAEEAAAA---------L--TALDGEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLNQVQASLASFPATIQSILEDYELHKAGKKRLAEIIV
G---FNDHLDDEPEPP-APVV----------------DEE---EVETADEEAEET--EVASRMESMAADYAKFQKAYAKNGP------THKT-----ALK
AREDMAAVFVTLKLPLALTDSLVRNLREVVGKIKDHERKILDLSRVAKMPRKDFIRAWEGNQTNL-WVDELLK-----RSSGLRDVKELVIAEQEATIAI
EQASFLTLADIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEFRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPVEATTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0Q7Q1X4|A0A0Q7Q1X4_9GAMM RNA polymerase subunit sigma-70 OS=Lysobacter sp. Root494 GN=ASD14_01490 PE=4 SV=1
-------------------MANERPAPQSDIKQLISKGLEQGYLTYAEVNDHLPDDMVD-EQIEDIIGMINGMGIAVHEVAPDAETLLLAGEAS-PGR--
-AAEEAAAA---------L--TALDGEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLNQMQAALASFPATIAHILTDYETHKTGKKRLAEIVV
G---FLD---AEPEPE-PVPV----------------DED----VEVAEEAEEAG--EVAERLGKIADAYGRFEKAYAKHGP------THKS-----TLK
AREEMAEVFVTLKLPLGLTDTLVKNLRDVVNSVKDHERRILDLSRVAKMPRKDFIRAWEGNQTNL-WVDDVLK-----RSSGLRDVKDQIVGEQEATIAI
EQANRLTLADLKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPVDATTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0P9C7V1|A0A0P9C7V1_9GAMM Uncharacterized protein OS=Thiohalorhabdus denitrificans GN=AN478_03525 PE=4 SV=1
---------------------MSNQAERSELKRLIALGKERGYLTYKEINDHLPEDVLE-EQVESIISMIGDMGIEVLDEAPQDEMLIGG--TA------
---EDAEEA---------V--ANVEADLGQTSDPVRMYMREMGSVPLLTREGEIEIAKRIEEGRNQVIRALCSLPSTFEEVLALGDR-WA-EVRLDEIVL
A---VDAED-A--EQG-EA-------------KEGDLDAA---VEQLEGDSVAGEEAQASEWFTRCRELYREAMEVRADQGV------GAEG-----YHE
KRDALAAEFQRVKLNPRLIDDLTERAQQQVNELRQSERSIMELCKEAGMARKEFLRNFQGWEGNA-WVDHLLE-----KANGLKAVRDRVREHQEGLADI
EQQAGLPVREVKELHRQITTGEAKARRAKTEMAEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLNRTSRQMLQRMGREPTPEELAEEMEMPEEKVRKILKIAKEPLSMETPIGDDEDSALGDFIEDKNTQAPVDAAISASLAECTDEV
LKELTPREEKVLRMRFGIGMQTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSKRLSSFME-
>tr|U4SIE0|U4SIE0_HAEPR RNA polymerase sigma factor RpoD OS=Haemophilus parasuis D74 GN=rpoD PE=3 SV=1
-------------------QYSQLEEQQSQLELLIAQGREQGYLTISEVHDHLPEELVD-DQIEDIIQMINDMGIKVLETAPDADDLMLVG------N--
-VVEEATKV---------L--STVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSELIARYDQVEEGTVRLSDLVT
A---FVDPNAVEST------------------DEESED-----ESEDESSGDGGD--LAREKFTLLKEQHQKALQAIQKHGR------TSKR-----SRD
QIQALSDIFREFRLVPKQFDLLVESMQKMMKQVRAEERQIQRYAEYAGMKKADFVKAFQGNELSE-WIEKAIN-----AVPKLANYVDNIRVNIANLQRL
EETTGLTITQIREIGGRIADGELKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAEKMGMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDSSLELPLDSATAESLRIATNAV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|C4K493|C4K493_HAMD5 RNA polymerase sigma factor RpoD OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rpoD PE=3 SV=1
----------------------MEQNPQSQLKLLIARGKEQGYLTYAEVNDHLPEDIVD-DQIEDIIQMINDMGIQVVEQAPDADDLMLAENTG------
-AVEAATQV---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGIHQVQCSVAEYPEAITYLLEQYDRVELGALRLSDLIN
G---FVDPNIQENVLP-GAI------------SDAE-DEE---D----DTSEVED--LAQQKFSELRAQYESTRTAIKQKGR------HHLT-----TAT
EILKLAEIFKQFSLVPKQFDYLVSSMRSMMDRVRVQERLILKLCEQCKMPKKNFIELFLNNETNN-WLKTALA-----MVEKLNDVLEDVQSNVQKLRQI
EEETGLSIEQVKDINRRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEMGREPAPEELAERMLMPEEKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSATSESLRLATNDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDVLKSFLD-
>tr|A0A0F3NLS7|A0A0F3NLS7_9RICK RNA polymerase sigma factor RpoD OS=Candidatus Neoehrlichia lotoris str. RAC413 GN=sigA PE=3 SV=1
--------------------MKDLQTDKEFIKNLISKGIKGGFVTFNDINDSFSDGILSTDIIDETISLLQDSGISVLEQSDEDEANSIAEESRAKD---
D-----EDD---------L--GTKSWDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKKIKSEKVNMLRSLIEAPLVLRTFMSWRDDLVNEQIMLRELID
LDANYKCEFPEGEFSE-TDDT---------D---GE----DITDDHD-DDESTFVLPKVINILDSIITSAEQILKLKKNRNA------RNEECNDELYNK
IHDDIWEMVSQIKLSDSAVLS-------ITQQIYNLNKSISSLAEAYGINRKEFLNAYNSNTVFE---TS--------PKKLLENEEKTLVNIYNKIKLL
SGEN--SLSEFKELVAKIQKHERASNHAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQA
RTIRIPVHMIETVNKINRTLRQMLHEMGREPTLEELSAKLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKKAVKPENAAVLADLREITTKV
LSTLTPKEERILRMRFGIGGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPSRARKLRGFF--
>tr|X5HJI8|X5HJI8_9RICK RNA polymerase sigma factor RpoD OS=Neorickettsia helminthoeca str. Oregon GN=sigA PE=3 SV=1
-------------------AEGYSSKFHQIVKALITKGLKKGFVTYGELSNSFSDEDFELNCIEEAISKLEESGIDILEKDEEDELTDGVKEEE------
------EEE---------E--DEAAGILGHTDDPVRLYLREMSYVKLLSREDEVEIAKTILAEKSESLSGMLLFPSAIREIMELGNRLEEKSVSLREVIE
SDSGLKSELTEDAERG-SDEL--------------------GKLDEA-QMSDEELMKRVFEIFEHLRTTIQSALERIKDKQVVQINKDIV---LDAEYEN
LHS---SLS-QMKLNPKVLSGLFATLQAKHDLILDREKKLLTYLSEHGVDRSKI---------VKILDQGVLR-----LKYAISDPNFSVEEFLKPVWEI
ESAEGMDYDTIKFLIRKITTHFDNANVAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHRRGHKFSTYATWWCRQAITRAIADCG
SIVRKPVHIHETANKVMRTRRKLYNLNGREPTVEEIASLLGISVDKVKKSLKVNQDPVSLESPVGDNNSGSFGDFIEDKNAINQVDVVLSKNLRKVLDEA
LSMLSPREEKILRYRFGLCKGTNLTLEQVGILYNVTRERIRQIESKSLRKMRSPSRSIKLRTFLK-
>tr|W0Q5A2|W0Q5A2_9PAST RNA polymerase sigma factor RpoD OS=Mannheimia varigena USDA-ARS-USMARC-1261 GN=rpoD PE=3 SV=1
-------------------QADQQLEQQSQLELLITQGREQGYLTLSEVHDHLPEELVD-EQIEDIIQMINDMGIQVLEVAPDADDLLLAE------N--
-VVEEATKV---------L--STVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINEVQCAIAEYPEALVGLLECYTQVESGEMRISDLVT
A---FVDPNASEQV------------------DDDEED-D---ENEDESSSDSSD--LAREKFEALRSQHEKVLLCIQKHGR------TNKK-----SRE
QIEILSNIFREFRLVPKQFDLLVATMQKLMKQVRAEERQIQRYAEYSGMKKTDFLKAFQGHELSE-WIEKAIN-----AAPKLANYVDNIRVNIANLQNL
EQTSGLTIAQIREIGGRISNGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A0R0CTA7|A0A0R0CTA7_9GAMM RNA polymerase subunit sigma-70 OS=Pseudoxanthomonas dokdonensis GN=ABB29_09530 PE=4 SV=1
-------------------MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDIVD-EQIEDIIGMINGMGIDVHEVAPDAETLLLAGTSD-GGR--
-AAEEAAAA---------L--TSLDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQAALGVFPVAVEMLLEEFELHKAGKKRLAEVIV
G----FNDPEEEVPEA-AAAN----------------SDD---DSDDDGDAEEAG--EVARRMQVLADGYAKFKKAYAKNGA------DNKA-----TTK
LREELAETFVTLKFPLPLTDVLVRKLREVVAQLKDHERRVLFLSNVAKMPRKDFIRSWEGNQTNL-WVDDVLK-----RSSALREVKDQIVSEQEATIAI
EKAMHLSLAEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMEMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIENTTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0A3ASK8|A0A0A3ASK8_9PAST RNA polymerase sigma factor RpoD OS=Chelonobacter oris GN=rpoD PE=3 SV=1
----------------------MEQTSKSQLKLLIAQGKEQGYLTFAEVNDHLPEELVD-EQIEDIIQMINDMGIQVLESAPDADDLMLTE------N--
-AVEEATQV---------L--SSVEAELGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEEGINEVQSAVAEYPEAITSLLEQYDQVEAGTIRLTDLIT
G---FVDLNDVVAE------------------EDDSGLDD---EEESESGDTDDS--FARQKFTELKEHYSVTLEVIRKHGR------TSKK-----AKE
HIAVLSEVFQQFRLVPKQFDNLVLLMRGMLKRIRTEERQLRRLVDYSKVPSSHFPKGFIGNETSD-WLVKALN-----ASEKLQNYESEIRMIISRFEVI
EKDSSLSVSQIREIGERISQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGRDATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAESLKMATQEV
LDGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSENLKSFLD-
>tr|A0A0A2ZQP6|A0A0A2ZQP6_9PAST RNA polymerase sigma factor RpoD OS=Gallibacterium anatis 4895 GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKQLIAQGKEQGYLTYAEVNDSLPEDLVD-DQIEDIIQMINDMGIQVLESAPDADDLMLNEN--------
-AVEEATQV---------L--SSVESEIGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEEGINEVQCAVAEYPQALDHLLAQYDLVEKGEVRLSDLIT
G---FVDPNAVDTEDY-SKFM-----------SSDDLDDE---DSDSDSSSDNDS--VAREKFTALKEQHHKTVAAIDKYGR------GNKK-----AKD
QINALSEIFQQFRLVPKQFDILVLSMRDMMKRIRTQERQIQRLAEYAKMPKGTFQKAFIGHETND-WIEKALT-----ASEKLKDYEVGIRQAIQLLKAI
EQESGLTITQIRQIGEKISQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREASPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDNTLELPLDSATAQSLKVATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|F5SS04|F5SS04_9GAMM RNA polymerase sigma factor RpoD OS=Psychrobacter sp. 1501(2011) GN=rpoD PE=3 SV=1
-------------------TDKAASQSTSQLATLIQMGKEQGYLTYAEVNDQLPASITE-DQIEDIVQMLTDVGIKIFESAPDADDILMN--DG-A-N--
-ATDEAAAV---------L--AAVETEPGRTTDPVRMYMREMGTVDLLTREGEIVIAKRIEEGIRDVQHAMAYWPGTVQFILDEYDLVEAGEKKLSDVIT
G---FLDPEEIEPPV---V--------------TTK-DED---EEEEEEEEDAEE--LVRQRVEEIRELFATAKQALEEYGR------GSPQ-----AEE
AYAQLADRFMLLKLNNRMSDNVMAIMHDVYDDVRKQERQIMRLVRRGKMPRAEFRKTFPSNETNV-WLTDRLK-----GADSLAKVVDDVVVLQRRIRDH
EDKLDMEIGEMKEVARRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQTISSPVEDATSAGLQEATRDV
LSNLTEREAKVLRMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLE-
>tr|O08348|O08348_XANCE RNA polymerase sigma factor RpoD OS=Xanthomonas campestris pv. campestris GN=rpoD PE=3 SV=1
-------------------MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVD-EQIEDIISMINGMGIDVHEVAPDAETLLLNDGNT-GNR--
-AAEAAAAA---------L--TALDTEGGRTTDPVRMYMREMGTVELLTREAEIAIAKRIEEGLSQVQAALGTFPLVDRAAAVRLRSAQ-GRQEAPGRDR
G---RLQRPDRRSRRC-RCSL----------------TKT---QTKTALPRKKSG--KLPRAWRTWPTSTPSSRRPYVKYGA------EHKN-----VAK
AREDMAAIFTTLNV--PLTDALVTQLRGVVNGIKDHERKVLHLATVARMPRKDFIRSWEGNQTNL-WVEDALK-----RSSALRDVKDQIVSEQQGSIEM
EKANYLTLAEIKDISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREPTPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0R0ATD3|A0A0R0ATD3_9GAMM RNA polymerase subunit sigma-70 OS=Stenotrophomonas panacihumi GN=ARC20_07645 PE=4 SV=1
-------------------MANERPAQQSDIKQLISKGLEQGYLTYAEVNDHLPDDLVD-EQIEDIIGMINGMGIDVHEVAPDAETLLLNDGNT-GNR--
-AAEEAAAA---------L--TALDTEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQAALGTFPASVELLLSDYELHKEGKKRLAEVIV
G----FNDLIEEADAA-AAEL------------------D---DEDEDGADEDTG--EVATRMENLANELAKFKKAYAKHGA------EHKL-----VTK
AREDIAAIFVTLKLPLPLTDVLVRQLREVQNHIKDHERRVLHLSNVAKMPRKDFIRSWEGNQTNL-WVEDALK-----RSSALRDVKDQIIAEQQATIDL
EKANHLTLAEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD-
>tr|A0A0J5P4Y8|A0A0J5P4Y8_9PAST RNA polymerase sigma factor RpoD OS=[Actinobacillus] muris GN=rpoD PE=3 SV=1
-------------------QHSQLEEQQSQLELLIAQGREQGYLTISEVHDHLPEELVD-DQIEDIIQMINDMGIKVLETAPDADDLMLAG------N--
-VVEEATKV---------L--STVESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAVAEYPEALTDLIARYQQVEEGTMRLSDLVT
A---FVDPNAEEAE------------------DDEDA--D---ESEDESGGDAGD--LARVKFYALKDQHQKALEAIQKHGR------TKAS-----AKK
QIQALSDIFREFRLVPKQFDLLVENMQSMMKRVRSEERQIQRYAEYAQMNKANFVKLFQGNETND-WIEIAIQ--TG-KAPKLADYADSIRGHIANLQKL
ELDSGLTIGQIREIGSRISAGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQCLQEMGRDATPEELAERMGMPEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDSSLELPLDSATAESLRIATNEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|E6W5Z1|E6W5Z1_DESIS RNA polymerase sigma factor SigA OS=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) GN=sigA PE=3 SV=1
-------------------S---TAEDQKLFTQLMEKSKERGFITYDELNDFLPKETT-PDLIDSIIENLGRIGIRLVATNKLSKGKGESSDEFAVFLEE
EEESEESTL---------D--LTPDT-SFRTDDPVRLYLKEMGSVPLLTREGEVDIAKKIEAGYEKIISSLIAIPKAVESLQELAEKLEAGEIGLKDIIM
LDDEVGSMGIIG---------D-------------------------------AHATEMRDFVNSICDIGQQLLS----LREYKAGKKDKYRKTLE----
---SMTAVISEIRLTNETISRISNMIKEQYLESRRAGSELAKIIKVTGLSRDD-LQYLCGEESSA-HVES---ARTSLRAEDFERLLGKASESIASLREI
EESTGVDANELMSIVQQVREGEEESKAAKMQLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLVRTSRNLVQELGREPTPEEIADKMDLPVEKVRKVLKIAKEPISLETPIGEEEDSSLGDFIEDKNTVSPAEAVISFNLKEQVRSV
LHTLSAREAEVLKLRFGIDTDSDHTLEEVGKKFNVTRERIRQIEAKALRKLRHPTRSKILRTFLE-
>tr|D4H0K4|D4H0K4_DENA2 RNA polymerase sigma factor SigA OS=Denitrovibrio acetiphilus (strain DSM 12809 / N2460) GN=sigA PE=3 SV=1
-------------------MSMSRKIKSPEVKSIIALGKEKGFLTFDEINENLPDDILS-ELIDEIMMLLAQLKIDVIDSKVDKPGLYSADDDDDD----
----EDSIS---------L--LKEVEESISTDDPVRLYLKEMGNIALLNREEEIEVAKEIEEGQRKVVRAVLLYPNTAMKIMDIARNIRNDSMRLKDIID
IDDGSDAENDDLDAVE--N--E------NAAEPVKTLIAAEVEAEQQ-EEREEQILEDIAD--HKNIDLNDKIKEN--KCSI------DEMLNIKFKMHE
TVDDITDKLLEIKV-------NYSKICLIANEIKDAHQAIYDRSKDIDKICKLIRYTDYTDAVSVD--EL-T-ACRGMALPDYEIIVKKYKKAKKGLDEC
INSLGFDKAELDVIHDSLLMGENETEKAKSKLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKMMKITRQLQQDMGREPTPEEISSKMDIPVEKIKKVMKIAKEPVSLETPIGEDEDSSLGDFIEDKSAKNPSEEVTYLKLKEHTKQI
LETLSHREASVLKLRFGIECDSDHTLEEVGKQFNVTRERIRQIEAKALRKLRHPTRSRILKTFTE-
>tr|R4I0X7|R4I0X7_9ENTR RNA polymerase sigma factor RpoD OS=Serratia symbiotica str. 'Cinara cedri' GN=rpoD PE=3 SV=1
-------------------NCLMEQNPQSQLKLLVTHGKEQGYLTYAEVNDHLPEDIVD-DQIEDIIQMINDMGIQVMEEAPDADDLMLAENTN------
-AVEAATQV---------L--SSVESEIGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVDAGEARMSDLIT
G---FVDPDAEEDIIP-TVT------------STEE-E-----------DDEAED--LARQKFADLRNQYEVTRLVIIENSR------SHAN-----ATQ
EILKLSEVFKQFRLVPKQFDFVVNSMRSMMDRIRAQERIIMKRCEQCKMPKKNFVSLFAGNESSD-WFKNAQE-----MSEKLKDVTEDVQCSLQKLREI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPMPEELAARMLMSEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD-
>tr|L8XXZ5|L8XXZ5_9GAMM RNA polymerase sigma factor RpoD OS=Wohlfahrtiimonas chitiniclastica SH04 GN=rpoD PE=3 SV=1
-------------------NALTVKEQQARIKELIAQGKEQGYLTYAEINDHLPEDIID-EQIESIIAMISEMGIKVSDEAPDMDSLLLTN-DS-IGS--
-VDEAAAVL---------V--NIDSSEIGRTTDPVRMYMREMGTVDLLSRDEEKSIAIRIEEGLNSALLNLANYYPAVDLLIARYEETLETDQRLGDIAT
G---FVDPSYYSEIAE-DKDD----------------LED---DEE--GGSAASA--IFAEKIAELKAIIAEIDALRGNKRKK----NIDAL-----ILD
AQERLKSKFIEFRLAPKMQEDMVALLKETIDRIRPLERKMMKICATCKMPRDAFIKTFPRNETKK-WVEEVIN-----SAKAIEEHKDAIFEIQTQLAKI
EKANSLAIYEIKEINREISINEAKAKRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQDMGREATPEELAEAMGLPEDRIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTGMVSPLEAATSVGLSEATREV
LETLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPNRSESLRSFMD-
>tr|A0A088UKI0|A0A088UKI0_9BURK RNA polymerase sigma factor OS=Burkholderia cenocepacia GN=DM40_5669 PE=3 SV=1
-------------------GGGTLPHAAAHLQALIATGLSRGFVTRGDIIDALPDDDAHESGVDAAAAVLGELGIAVRDRTDTASGWTLERYFRPAPT-A
RAWVDGAGA---------L--AAAELLAPRTTDPVRLYLREMGMTPLLTRDEEFAYARRLERGRAASVAVLCGDPEALDALVAIRTEIAECRSPASIYVV
CLAEVAGDDARS--VD--A------------APAIAGIRADEGDDMGPRHDDSVQRNAIVARLAGLDALARSMRAALAT-----------GGTASAAYRA
NVRDAAALLGTLHLSARALERMSEALRARARRQRMLRGRLARMLAEVGVASFAH----AADADHAGWLASCIAAHPAC-GPILTRRAADFVDARDTIVRD
ARTSALPPDATATLDARLGAIERAMHAARTGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIERYDYRRGFRFSTYATWWIRQAITHALADFG
RTIRVPTHTADALNKLARIAREHRQRAGTAPTPAQLAAHMGEPVDKVRDLMAIVKEPVSADVPISPEGDMTFADVAPDLSSPSPEEAAGAAQLRRTIAAA
IDRLPSREATVLRLRYGLQTDEGCSLRDIGRQLNLSAERVRQIEAAALARLRASDALGALRSFIA-
>tr|A0A0D8DNX1|A0A0D8DNX1_9BURK RNA polymerase sigma factor OS=Burkholderia sp. USM B20 GN=PL79_33065 PE=3 SV=1
-------------------DDGAPPHAVAHLHALIATGLSRGFVTRGDIIDTLPDDDAGDSGIDAAAAVLAELGIAVCDSADTASGWTLDRYFRPAPP-A
RAWADGAGT---------L--AAADLLAPRTTDPVRLYLREMGTTPLLTRDEEFAYAQRIERGRAAAVAVLCGDPDALDALVSIRTEIAECRTAASTYVV
FLADGPRDDRPA--DR--VD-----------SPASTGARDDET-----PPEDSAWRDAVVARLARIDALAGGMRAALLS-----------GGTASAAYRA
QVRDVAALLGTVSLSARALERMSEPLRKRACRQRALRGRLARMLADVGVPSFAR----SSDDDHAGWLASCIAAHPAC-GPTLTRRAAEFVDARAAIVRD
APTSALPPGATASLDARLAAIERAMQPARTGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIERYDYRRGFRFSTYATWWIRQAITHALADLG
RTIRVPTHTVDALNKLTRLAREHRQRVGTAATPAELAVHMGEPVDKVRDLMAIVKEPVSADLPVSPEGDMTFADVAPDLSSPSPEDAAGAAQLRHTIAAA
IDRLPPREATVLRLRYGLHADEGCSLRDIGRQLNLSAERVRQIEASALARLRASDALGVLRSFIA-
>tr|A0A0B1YI42|A0A0B1YI42_9BURK RNA polymerase sigma factor OS=Burkholderia sp. A9 GN=PI86_12060 PE=3 SV=1
-------------------DDGAPPHAVAHLHALIATGLSRGFVTRGDIIDALPDDDANDSGIDTAAAVLGELGIAVCDGADTSGGWTLERYFRPAPP-A
RAWVDGAGA---------L--AAADLLAPRTTDPVRLYLREMGSTPLLTRDEEFAHAQRIERGRAASVTVLCGDPDALDALVAIRTEIAECRAAASTYVI
FLDDGVRDDATT--AD--AN-----------SPAATGARDDDT-----PPEDSAWRDAVLARLARIDAFAHGIRAALAA-----------GGTTCSAYRT
QVSDAAALLGTLRLSARALERMSEPLRARARRHGALRGRLERLLAQAGAPSFAR----VADDDHAGWLASCIAAHPCC-EPVLTRHAAALVDARDALVRG
AGAPELPPGATASLDARLGAIERAMQPARTGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIERYDYRRGFRFSTYATWWIRQAITHALADLG
RTIRVPTHTVDALNKLTRIARDHRQRAGTAATPAELAAHMGEPVEKVRDLMAIVKEPVSADVPVSPEGDMTFADVAPDVSTPSPEDAAGAAQLRDAIACA
IDRLPPREAMVLRLRYGLHTDEGCSLRDIGRQLNLSAERVRQIEASALARLRASDGLGILRSFIA-
>tr|B1Z3L6|B1Z3L6_BURA4 RNA polymerase sigma factor OS=Burkholderia ambifaria (strain MC40-6) GN=BamMC406_5892 PE=3 SV=1
-------------------DDGAAPYAVAHLHALIATGLSRGFVTHGDIIDGLPDDDANDSGIDAVAAVLDELGIAVCDSADTASGWTLERYFRPAPP-A
RAWADGAGT---------L--AAADLLAPRTTDPVRLYLREMGTTPLLTRDEEFAYARRIERGRAASAAVLCGDPDALDALVSIRVEIAQCRTAASTYVI
FLDDGPRDDMTV--DH--AE-----------SATPAGARDDDTE-ADTQTEDSAWRGAVVARLARIDELAHGMRAALAS-----------GGSACAAYRS
HVRDAAALLRTLGLSARALERMSEPLRARARRHRALRARLERMLADVGVPSFAH----AADDDHAGWLASCIAAHPAC-APTLKRRAAEFIDARDAIVRA
APASELPPGATASLDARLGAIERAMQPARTGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIGLLKAIERYDYRRGFRFSTYATWWIRQAITHALADLG
RTIRVPTHTVDALNKLSRLAREHRQRAGTAATPAELAVHMGEPVDKVRDLMAIVKEPVSADVPVSPEGDMTFADVAPDTTTPSPEDAAGATQLRRTIAAV
IDRLPPREAMVLKLRYGLHTDEGCSLRDIGRQLNLSAERVRQIEASALARLRASDTLGLLRSFIA-
>tr|G2HX02|G2HX02_9PROT RNA polymerase sigma factor RpoD OS=Arcobacter sp. L GN=rpoD PE=3 SV=1
----------------------M--SVKDINKTIEQLKEYDSILTYEKIIKIFPKAPSG--NIKKLLALIQLYNVTVISSQEQAKRMNAEEAKK------
NEDDVYDLL---------K--NKELLEWSRSDSPVRMYLREMGQIPLLTKEEEVEISKKIEMGEDIILDAICYVPYLIDFILEYKEPLVNRERKVKELFK
NFDDDDSENEDE--E---NLEE------SDE-----------------EKVSG--QKKLDKRAQTIIEAFKNLEKAKKDWLKFS-VKETA---KSDDEVD
QMTFNLALL-DLGPTSKL-----------ITEIVKAMETALKSDTGFDSELKRLEY---KLPLFNKNHKKILDNLAQITEATMVSTYMEIKKLFQTAEAS
KGGFDLSPEELRDVLEQIKRGKQITDTSKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKGIQENGKEPDVDEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDDDGKFGDFVPDEKAPTPVDNIMKEDLQGQIDQI
LGQLNEREQAVIRMRFGLMDASDRTLEEIGKELSVTRERVRQIESSAIKKLKHPKVGKNLKNYVE-
>tr|D5V5D8|D5V5D8_ARCNC RNA polymerase sigma factor RpoD OS=Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) GN=rpoD
----------------------M--SAKDLNKEIEKLKEYDSTLTFEKVIKLFPKAPSS--NIKKLIALMQLYNVNMMTSQEQAKVMNAVEAKK------
GEDSVYDLL---------K--NKELLEWSRSDSPVRMYLREMGQIPLLTKEEEIEISKKIEMGEDIILDAICFVPYLVDFILEYKEPLVNRERKVKELFR
NFDDEDNDNDSD--D---DDTE------ETE-----------------EETSG--QKKLDKRAETIIAAFKILEKAKKDWIKFQ-SKETA---KSDEEFD
VITFNLALI-DLGPTSKL-----------ITEIVKAMETALKSDTGFDSELKRLEY---KLPLFNKNHEKLLDNLIQITEATMVSTYMEIKKLFQTAEAS
KGGFDLEPEELIDVLEQIKRGKKITDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKGIQENGKEPNVDEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDEDGKFGDFVPDDKAPTPVDNIMKEDLQNQIDQI
LAQLNEREQAVVRMRFGLMDASDRTLEEIGKELSVTRERVRQIESSAIKKLKHPKVGKNLKNYVE-
>tr|Q65RP3|Q65RP3_MANSM RNA polymerase sigma factor RpoD OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpoD PE=3 SV=1
-------------------TSYMDHNPQSQLKLLIAQGKEQGYLTYAEVNDHLPEELVD-DQIEDIIQMINDMGIQVLESAPDADDLMLSE------T--
-AVEEATQV---------L--SSVEAELGRTTDPVRMYMREMGSVELLTREGEIDIAKRIEDGINEVQSAVAEYPEALDYLLKQYEQVEEGSVRLADLIT
G---FVDLNAEEAS------------------DDEDGDEE---EDEESDTSTDDS--VAREKFSALKDQCVKTLEFIEKYGR------TDNK-----VKE
QIQVLSDIFTQFRLVPRQFDTLVLSMRSMMKQVRAEERQIQRLADYAKVPKDDFQKAFIGNETSE-WLESLLQ-----SVEKLQQRAPEISKSIVRLQQV
ETDTKLTVQQIRDIGERIAQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREASPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|E1W3G8|E1W3G8_HAEP3 RNA polymerase sigma factor RpoD OS=Haemophilus parainfluenzae (strain T3T1) GN=rpoD PE=3 SV=1
-------------------QQSTAEQYSEQIEQLMELGRTQGYLTYAEINDLLPEDLID-EYYDKLLQTQHDAGIPVLDEAPESDEMMLND------T--
-AVEEATQI---------L--SNVESEIGRTTDPVRMYMREMGTVDLLTREDEISIAKRIEEGIDEVQTAIAAYPEALTELLDNYDQVEAGNYRLADLIT
G---FVDPNIAAEE------------------ADEEVSDE---EDESDSSDDSDS--VARERFSALREQHTKTLATIAKHGR------SGKR-----AKD
QIAQLADIFKQFRLVPKQFDTLVLSMKNMMKRVRAEERQLQKVLDIAGMPKDEFEALIVANGSSD-WVAKALK-----SAKRLPKYEERIRLSLDNLANI
EQHTNLTIQQMREICDAVSRGEQKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|F9QCB9|F9QCB9_9PAST RNA polymerase sigma factor RpoD OS=Haemophilus pittmaniae HK 85 GN=rpoD PE=3 SV=1
-------------------QQSTAEQYSEQIEQLMELGRTQGYLTFAEINDLLPEDVID-EYYDKLLQTQNDAGIPVLDEAPESDEMMLND------T--
-AVEEATQI---------L--SNVESEIGRTTDPVRMYMREMGTVDLLTREDEISIAKRIEEGIDEVQGAIAAYPEALNPLLAHYADVEEGNYRLADLIT
G---FVDPNIIEEE------------------SDDDEDEE---EDESDSSDDSES--LAREKFYELKAQHSKTLQAIEKHGR------HGKR-----AKE
QIALLGEIFKQFRLVPKQFDQLVFAMKNMIKQVRAEERQLQKVLDIAGMPKDEFESLVLSHSSNP-WLEKALK-----SAKRLPKYEERLRLSIDNLALL
EQRSNLSVLEIREICDAVARGEQKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|I0ICM3|I0ICM3_PHYMF RNA polymerase sigma factor SigA OS=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) GN=rpoD PE=3 SV=1
---------------------MLIEPLHPALLEVFLCGRRRGVVTFDQIIALMPDSYVEA-KLDEILVVLERMGIRLTASTAMPAASEPHPFTGTPAADD
AAAAQEELA---------K--ALAESGSKRIDDPVRMYLTQMGEISLLTRDEEIRLAKKIETTRFIFRRKVLQNDHSIQQSVDILDMVHDSSLPFDRTMK
VSTAIDGHKQILGAR----------------------------------------IPVNVKTIKRMLEL-------------------------------
-NRQDWTRDAVKRRMKG-------RRRRMVTLIEECCLRT----SRVQPNLKKLENINSKMKRLMS-----AE------QHPDRYDPEDVQVMGEELEGL
RSLVLLEPEELQAMLADVHVIFEDYEQAKRDLSGGNLRLVVSIAKKYRNRGLSFLDIIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIADHA
RTIRIPVHMIETMSKLRNIQKDLLQDLHREPVMEEIAERAGMDIEEVKRVMKISRHPVSLDRPVGESEDSYFGDFIQDDAASNPADAAATDMLRQQIEHV
LKTLTYREREIIKLRYGIGDGYTYTLEEVGRIFKVTRERVRQVEAKAIRKLQHPVRKRKLAGFVD-
>tr|A0A0F9TBL7|A0A0F9TBL7_9ZZZZ Uncharacterized protein OS=marine sediment metagenome GN=LCGC14_0368710 PE=3 SV=1
-------------------IEDASDTLDASVKNLIAKGKQRGYITYEEMNDDLPDAAVSD-KLDSLLMTFDELGIELLDEQEAESRTD--KFTADAE---
-KASASKVK---------T--DDLEAPGRRIDDPVRMYLTQMGEIPLLTRKQEIDLAKKIEMTRMHFRRRVLESDYCATQAIEILKQVFEGNLPFDRTMK
ISTAENLSKETITAR----------------------------------------MPANLGTLDMIAQR-------------------------------
-NLSDWGKHNALRNLWQ-------RRRRAAKLVEELSLRT----SRVQPLMKKLQHISEKMDELRS-----GN------G---DLPQEDLEVMREEIDGL
QDLVLEDPDTLRKRIKAIHKVFNDYEQAKRELSAGNLRLVVSIAKKYRNRGLSFLDIIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIADHA
RTIRIPVHMIETMSRLRNISKRLVQRLGREPTIEEIANDAGMTVSEARRVLKISRHPISLDRPVGESEDSYFGDFIEDDSAESPMVSAGTEMLKDRIEDV
LKTLTYREREIIKLRYGIGDGYTYTLEEVGRIFKVTRERVRQVEAKAIRKLQHPVRARKLEGFLD-
>tr|A6CE36|A6CE36_9PLAN RNA polymerase sigma factor SigA OS=Gimesia maris DSM 8797 GN=sigA PE=3 SV=1
-----------------------MHRFDANLNLLFQEAEKQGFLTFQQVHTFLPDEGGDS-LIEYIVVGLEERGLDLIDDPNADIDDEEVASVDSSA-DD
----S---S---------S--IVEPETSLSSRDPIRMYLSQMGNIPLLSRSREIFLAKKIEITRKRFRRTVLESDFALKIAIDTLEKVFAGELPFERTLR
TSDTEDATKDQIMGR----------------------------------------MPYNIATLKALLQK-------------------------------
-NNEDFEQREVQKRMVV-------RRQKMATLCEELCLRT----QRLQPVLKRIHQIAGRMREVQD-----YK------QL--RHKATDHRLLERELSEL
TIMVVETSEDFQTRSREIKRRFDDWTEAKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKFSTYATWWIRQAITRAVADHA
RTIRIPVHMFQSISTLKARSEQIRQETGREPTMEELADSVGLGVEETERIMKTWKHPISLDTPVGESEDSSFGDFLEDGHESSPADAAMREMLKDKIEHV
LKSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQTRSAHLRGFVD-
>tr|F0SFA0|F0SFA0_RUBBR RNA polymerase sigma factor SigA OS=Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1
-------------------RSIFVHQLDDNLQQLIKQGQKQGFLTFSQVNEYLPDEDVNE-KLDTLLLSLEELGMEIVSEKHVSKKKV--QLDAEAA---
SEKRNGE-L---------A--EDDDEGSRRIDDPVRIYLTQMGEIPLLTRDEEITLAKKIEVTRKRFRRQLLSNDCAMRSAIETLAKVHRGELPFDRTIK
VSLTESVEKEQVIGR----------------------------------------MPHNLKTLEYLQQK-------------------------------
-NQHDFERKEARHSLDT-------RRRKMVTLVEEMSLRT----QRLQPLFKRLQQISQRMQELQV-----VS------RR--QNSADEKAQLQRELHDL
MLMTYETPETLKGRVREIEERYHDYETAMRELSGGNLRLVVSIAKKYRNRGMNFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETMSKLRKVGKDLVQELGREPTIEEMAEAAEVSLEEARRVMKISRQPISLDRPIGEGEDSYFGDFIEDHSTDSPVSTATQEMLKDKIDHV
LKTLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSHQLKGFIE-
>tr|E8R2V4|E8R2V4_ISOPI RNA polymerase sigma factor SigA OS=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) GN=sigA PE=3 SV=1
-----------------------MDMLDEGLKALLDLGKRQGFLTMSQINEVLPDDASQD-RLDALFNTLEELGVEVLQRDEEADGRI--APGDDLDDDP
DLDLDGDLA---------V--EDLDDMSRRIDDPVRMYLTQMGEIPLLTREQEISLAERIESTRKRFRRRVLECDYALRLVVDVLKKVDSGELPFDRTVK
VSMTENLEKNQILGR----------------------------------------MPHNLVTLEHLMDC-------------------------------
-NDRDFKRRRLARALAI-------RRRKAVKLVEELSIRT----QKVQPLMKRLEQISARMQELLE-----VR------AG--RGRLDEHANLEKELRDL
MLMTLETPAGLARRVREMNERFKEYEKAKRKLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEWRRGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETMSKLRNVNKKLLQEKGREPTIEETARAANISIEETRRVMKISRHPISLDRPVGESEDSYFGDFIEDTTAENPINSATQEMLKDKIDQV
LKTLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFLE-
>tr|A0A0F6LPR0|A0A0F6LPR0_VIBPH RNA polymerase sigma factor RpoD OS=Vibrio parahaemolyticus 863 GN=rpoD PE=3 SV=1
----------------------MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVD-EQVEDIIQMINDMGIKVVETAPDADDLALNDDTN------
-AAEAAAAA---------L--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQSSVAEYPGTIPYILEQFDKVQAEELRLTDLIS
G---FVDPDADDTA------------------SETQLEDL---EDDEEDSDDSEE--LALEKFNQLRSTYQNLQLAINEYGY------DSPK-----ATV
ANEMMLDVFKEFRLTPKQFDHLVNELRTAMDRVRTQERLIMKSVEYGKMPKKSFIALFTGNESSD-WLDEILA-----SAEKIKRNEEEIRRSIAKLKMI
EEETSLNVQNIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKMATKDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD-
>tr|A0A038H4C6|A0A038H4C6_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia jiangsuensis GN=rpoD PE=3 SV=1
-------------------RQRRADEQQRAVRALIRVARDQGFVTHAQINDHLPGDLAQ-SVLDDVSRTFLEMGVAVYEQVPDTETLLLDDAVQVVALDD
E--EDAEVA---------L--STVDAEFGRTTDPVRMYMREMGAKQLLTRAAEVKIAQRIEASINEMIQAIAASPPTISMILASARQVAENELGIDELID
GIDDKAMPSEID--KP--E------------------DERDPEAEDE-RLRLTQLFARVEE-------CIDQLREAGTT-----------------SVPG
AHDTIRKELARVRFTTRTVDRACNDIQQRLVHVRQIERRISSIAIDRCGMREQFIASFPGHETDL-WTTT---AASRDYGASLERSLPAIQAEQCRLIDL
ERHAAMPVQRLKQIGRQLLAAESRMRHAKNEMIEANLRLVISIAKKYVNRGVHFLDLVQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRAVADQA
RTIRVPVHMVETINKLNRISSEILQQTGKPAQPAVLAERMELPEARIGSIQKMAMRLISLETPANDDADATLGDLIEDSNAESPLDAVVRASLRVAIDDA
LSALTPREARVLRMRFGIDMLSEFTLGELGTHLGVSRERIRQIESQAIRKLMHPRRADKLRSFLD-
>tr|A0A063B4Z7|A0A063B4Z7_9BURK RNA polymerase sigma factor OS=Burkholderia sp. lig30 GN=LIG30_3654 PE=3 SV=1
-------------------DAASSADTGAVLHALIALGLARGFVTRGDIADMLPDDAIDEAGIDAATAALGELGIAVRDAADAPGPWSLDRHFANSDA-P
HALTDGPAS---------L--ATVDLLAGRTTDPVRLYLREMGATPLLDRDEEIALARQIERGRAACVEALSGHPAALDALASINLEIKEGRAVATVYVT
GFVDEPDGASGSGPAA-PASAP------GAPAPDGTGEA-GTDAETEAGRDCPARRMAVIERLDRIGASASTLRDALQS-----------DGHASDGYRA
CRREIAALLRQIRFSARAVERMSEPLRRCAGDARPLER--------------------------------------------------------------
------------RVAAQLDAIERATQPAKRKLFQSNLRLVVSIAKRYPDRGLPFLDLIQEGNIGLMKAVDRYDHRRGFKFSTYATWWVRQAITHAIADQG
RTIRVPAHTVDAINKLSRIALDHAHRSGSAAAPGVLAKQMRVPVDKVRDLMNVVKEPISTDVPVSAEGDLTLCDVVADMDTPSPDDAASARQLSDALAAV
FDQLPRREATILRLRYGIDSTDAHSLRDIGQQLNLSAERVRQIEAAALERIRTLDQVRDLRVFIA-
>tr|A0A088UI02|A0A088UI02_9BURK RNA polymerase sigma factor OS=Burkholderia cenocepacia GN=DM39_5473 PE=3 SV=1
-------------------ERDARDGAAPRLHALIATGLARGFVTRGDIVDALPDEDADDAGIAAAASTLGELGIAVHDAIDARGGWALDRHFSPAAR-S
PAWPDGAGA---------V--AALDLLAPRTTDPMRLYLREMGATPLLERDDEIDLARQLEAGRAACIDALSGDPAALDVLSAIHRDIVERRAPASAYVT
GLVDAGDARPQAPGT----------------DAAGPGAYLAEPDDDASDRDCPATRSAVIERLAAVAALAAAMRDAVRA-----------HGAASPAYLS
LCRESATLLGTLRFSARAVERMLA----------------------------------------------------------------------------
-RSPDLPPDTIAALDARIERIERATRPARTKLVKSNLRLVVSIAKRYPDRGLPLPDLIQEGNIGLLKAVERYDHRRGFKFSTYATWWIRQAITHALADLG
RTIRVPAHTVDAVNKLARIARDHVQRAGVAASPAELADRMALPLAKVLDLMAIVREPVSTDVPVSPDGDMTFGEVVPDHATPLPEDAAAATQLRAAMAAT
LGELPAREATVLRLRYGIGTADGVSLRDIGRQLNLSAERVRQIEASALERIRASGALHGLRSFMA-
>tr|A0A0Q7F5L0|A0A0Q7F5L0_9CAUL RNA polymerase subunit sigma OS=Phenylobacterium sp. Root1290 GN=ASC79_10195 PE=4 SV=1
-------------------DGPLLDLTDAGVKKFIKQAKARGYVTMDELNKVLPSEEVT-EAIEDTLAMLSEMGVNVVEAEEDA-------E--------
---ET-AVV---------E--TTKEPAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGSGRILLREVID
LEQTYGGANAAAAELA-GAAE--------E-----------EAVAKAEDDDDFDDREGVMATLDAIASEFDAFRALQEKLVGKRLKGEDLSDADRKAYTT
ASLAIVQHLKTLKLNNNRIEALVEQLYAINKRLMGLEGRLLRLADSYGISRSEFLKAYFGQELSP-WTDQVK------PTKFVENDAGQIGDIRAEVAAL
ATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|R5EJG6|R5EJG6_9GAMM RNA polymerase sigma factor RpoD OS=Succinatimonas sp. CAG:777 GN=rpoD PE=3 SV=1
---------------------MDNNSASTEFKQLIAKGKDQGYLTIDEINDLIPPDIIS-DQLSVFIQTFIDMGINVCETPPEADDILLNGNSQ------
-V-EI-VAN---------Q--LDSSVDIGRTTDPVRMYMREMGNVSLLTRKDEIEISKRIEKGTNEVQLCLVEYPQAMEELFSRYEQTLDSEIKLGDIIN
G---FADPNSQESEDG-EDIA----------AKKGKKEEA---DDDLDEGSDSPT--ETRKRFTELRVQFDKVTAARQKST-------TDKK-----YKK
ELEKLVEIFETFKIVPSQLESLLRKMHDMMDRVKRQDRRVREIAGRCGMKIDELKKYYNESVSNM-WFEKAVK-----VAAKLKGYEAEIQKCVEALKEI
EDDSGINIARLRDLSRRIMMGDAMAKKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEKGREPTPEELASKMGLPEEKIRKVMKIAKEPISLETPVGDDDDSHLGDFIEDSSIVVPAEAATSESLKNAINGV
LDEMPPREAQVLRMRFGIGMPSDHTLEEVGRQFGVTRERIRQIEAKALRKLRHPCRSQGLRGFLD-
>tr|E8LKX6|E8LKX6_9GAMM RNA polymerase sigma factor RpoD OS=Succinatimonas hippei YIT 12066 GN=rpoD PE=3 SV=1
---------------------MDNNSASTEFKQLIARGKEQGYLTIEEINDLIPPDIIS-DQLSVFIQTFIDMGINVCETPPDPDDILLSDSSQ------
-V-ET-VAN---------Q--LDSTVDIGRTTDPVRMYMREMGNVSLLTRKDEIEISKRIERGTNDVQMCIVEYPLAMEELFRRYDEALASEIRLGDIVV
G---FSEPSKEEINI---D------------AKKGKKEDD---PDSDEEDSASQA--LVKQKFTELRIQYEKVVAAHAKKGS-----AAVKK-----YKQ
ELQKLSEMFSTFRLVPQVLDSLLRKMHDMMDRVKNQDHRIREVANICGMKLDELKAFYTEHESDM-WFDKALK-----SVARLKDYRPVIEECVNALKEV
ETESGISIARLRDLSRRVMMGDAMAKKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEKGREPTPEELAEKMGLPEDKIRKVMKIAKEPISLETPVGDDDDSHLGDFIEDSSIVVPAEAATSESLKNAINNV
LDEMPPREAQVLRMRFGIGMPSDHTLEEVGRQFGVTRERIRQIEAKALRKLRHPCRSAGLRGFLD-
>tr|A0A0H3M842|A0A0H3M842_EHRRW RNA polymerase sigma factor RpoD OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpoD PE=3 SV=1
--------------------MKDLQTDKELIRTLVSKGIK-GFVTFNDINDVFSDYVLS-DNIDETISLLQDSGINVLEQSDEDEASSIVESGRLKD---
GIDDDDVSD---------T--SIKSWDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKKIKSEKVNMLRSLVESPMVLRTFMSWRDDLVNEQIMLRDLID
LDANYRYEFPEKFSDV-DDES---------D---TD----DISD--D-DDDNTSILPKVVSILDAVIESAEKILELKKQHKG------KLTKDIEKQYND
LHDNIWEMIYQIKLSNSAVLS-------ITQQIYSLNKSIASLAESYGIPRKEFLDAYNTNSVLE---TS--------PNNMIEKEETNIVSMYNKIKLL
SGEN--SLAEFKSLVTKIQKHERAATQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQA
RTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVRPEDAAVLADLREITTKV
LSTLTPKEERILRMRFGIGGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPSRARKLRGFF--
>tr|A0A0A1XXF5|A0A0A1XXF5_ANAPH RNA polymerase sigma factor RpoD OS=Anaplasma phagocytophilum str. MRK GN=rpoD PE=3 SV=1
--------------------MRDSLMDKELVRSLITKGIKGGIVTFDDLNDALSDDEVVSDSIDETISMLQDSGISVLEQSDVDDTDDTVTGES------
-VVKDEEDE---------A--SIRSWDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKRIKSEKVNMLRCMVEAPLVLRTFMSWRDDLVNQQVLLRDLID
LDANYRCGFPQPGFGE-GDGE---------V---DDGDPESSLDDEA-DDESSLGLPKVISILDSTIEAAEKILEMKKKKR-------DGGEYDENAYNE
LHDSIWEMVSQMKLSDSAVAS-------VTQQIYALSKSIASLAESYGVDRKSFLDAYNNNTIAE---TS--------FQNLLDKEGDTLLEMQNRVKLL
SGED--CPGSFKALVAKIQKHERTANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQA
RTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLNINVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPENAAVLADLREITTKV
LSTLTPKEERILRMRFGIGSGKDHTLEEVGRLFNVTRERIRQIEAKALRKLRHPSRARKLRGFF--
>tr|B9KIB7|B9KIB7_ANAMF RNA polymerase sigma factor RpoD OS=Anaplasma marginale (strain Florida) GN=rpoD PE=3 SV=1
-------------------SFVGFVMDKELVKNLITKGIKGGVITFDDISDALSDDDVVSESIDETISLLQDSGIGVLEQSDEEEADAVVSEEN------
-AAKDEEDE---------A--GMRSLDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKRIKSEKINMLRSLIEAPLVLRTFMSWRDDLVNQQVMLRDLID
LDANYRGGAPRQEFEE-GG-----------M---GDSGGDGA--DDE-GEDSSAGLPKVISILDATIESAEKILEMKKQKR-------DSGKYDKKAYNA
LHENIWELVSQMKLSDPAVLS-------VTQQIYNLSKAIASLVESYGVDRKSFLEAYNNNTVFE---AS--------PKNLLEKEKKTLTDIQNKVRLL
SGED--SPGNFKALVAKIQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQA
RTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSTRLGMNVEKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPENAAVLADLREITTKV
LSTLTPKEERILRMRFGIGGGKDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPSRARKLRGFF--
>tr|I4B852|I4B852_TURPD RNA polymerase sigma factor SigA OS=Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H) GN=sigA PE=3 SV=1
-------------------EL----EQLPEIQKIIHIGKANGEITYDEINDILPEKLTNDKI-DDVFILLNQYGIEIVEEYEKKQVGRRGDTSS--AVLL
RPAAA-KKK---------K--STGAAGASAADDPIRLYLKEIGKISLISGDKEVELARRIEGGENIIEDAVLRSSLLRSAFIKAYNRVDKGTLRITDIAR
ASKTYYISTNEQKEL----------------------------------------REKFLREIKPVTDFDKQISSLKAKLKRYT-HKSKK----------
-HQEVWHVI-RVGVSQKELQKHVNKIKSMVFRIKEIKRHFLKLK-------ERY---------GHIKAFNRY-VELGCTVEDVKNIIKDIRNNERKLRRM
EQEAGSPTLIILLWGEKIARGQREIDAAKKELINANLRLVVSIAKRFANRGMHFFDLIQEGNIGLMRAVEKFEYRKGYKFSTYATWWIRQAITRALSEQA
RTIRIPSHMIEQINKVNREARIFLQETGREPSDDEIGERLGWPVIKVKQVKSVAKDPVSLETPVGEDEDSELGDFVEDKKAPSPLQSTAQSILAEQLKQV
LATLPAREQKVIRMRFGLDDGYTHTLEEVGYVFKVTRERIRQIEAKALRRLRAPTRMRRLRDFLD-
>tr|A0A0P0P1E2|A0A0P0P1E2_9CAUL RNA polymerase subunit sigma OS=Caulobacter henricii GN=AQ619_13855 PE=4 SV=1
-------------------DGPLLDLTDAGVKKFIKQAKARGFVTMEELNKVLPSEEVS-DAIEDTLAMLSEMGVNVVEAEEDAET----NE--------
---DNQQVI---------T--SDKPSAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVID
LEGTYAAINGVAAQPA-TDDG--------P-----------GAPKPEGDEDDFDDREGVMTILDAIASEFETFRKLQDKLVGSRLRGEDLSDNDRKAYEA
LSQTIILHLKTLKLNNNRIEALVEQLYAINKRLIGLEGRLLRLADSYGISRSEFLKAYFGSELNP-WSDQVK------ATKFVENDATSVTDIRSEIAAL
ATETGVPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|X0Q6W8|X0Q6W8_9GAMM RNA polymerase sigma factor RpoD OS=Psychrobacter sp. JCM 18900 GN=rpoD PE=3 SV=1
-------------------NDKSVSKSTSQLATLIQMGKEQGYLTYAEVNDQLPDSITE-DQIEDIVQMLTDVGIKIFESAPDADDILMN--DD-S-S--
-AADEAAAV---------L--ASVETEPGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEEGIRDVQHAMSYWPGTVQFVLDEYQKVQDGEKKLSDVIT
G---FLDPETEEDKIA-AQEA------------KAK-DDD---EDEDEEDEAEEE--EVRLRLEEIEHLFIKAKQALLDYGR------GSVQ-----ADT
AYALLAERFMMLKLNNRLSDQVMAIMHDSYDDVRKQERQIMRLVRRGRMPREEFRKTFPSNETNV-WLIERIK-----GAGTLEKVTDDVILLQRRIRDY
EQQLDMKIHDMKDVARRMAVGEAKARRAKKRRWLLTYVWLSLSPKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDATAAGLQEATRDV
LGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLE-
>tr|A0A067Z0S2|A0A067Z0S2_GLUOY RNA polymerase sigma factor RpoD OS=Gluconobacter oxydans DSM 3504 GN=rpoD PE=3 SV=1
-------------------DTTLLDTQSAAVKRLIAKGRERGHITFDELNAVLPQDQMS-EQIEDVMAALSEMGIQVIENEDQDEAEAPAEKEA------
-EAEGPQGG------------NVDAEAASRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTIRAIISWHERLKDGEMLLRDIVD
LEASQGG-GPDPEAVE-GEE-----------------A-------EDEGEGDQQEKPEILARFEAIEPLYHKLRKLQIKRIEALTGGEDHSDKSEQTYEK
LRHELVSLVEQVHLHNNRIEELVAQIKMQVQKLNNVEGRMMRLAESCKISRDDFLIKYRSRELDP-WLDSISA-----LKNLTTKHMDQLRNLRGEIAAL
SHETGLPVGEFRRVYATISRGERDSTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
KTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A023D516|A0A023D516_ACIMT RNA polymerase sigma factor RpoD OS=Acidomonas methanolica NBRC 104435 GN=rpoD PE=3 SV=1
-------------------DTSVLDTQSAAVKRLIAKGRERGHITFDELNAVLPQDQMS-EQIEDVMAIFSEMGIQVVENEDHDEAEPVEEKDE------
-ESEDSPTG------------NISAESVGRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTIRAIVSWHDRLKEGEMLLRDIVD
LEASQNG-GEEPGESE--VS-----------------F-------DSDDEGGEQEKPEILARFEIIEPLYDELRQLQVKRIEAMTSGSESVGASEERYHA
LRHELVAMVEQVQLHNNRIEELVLQLKMKFQRLNGLEGQMLRLAESCKVSRDDFLLKYRGNELDP-WLDTVSA-----LKTFTTRYYERIVDLRTQVAEL
SHSVGLPVGEFRRVYATVSRGERDTTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A060QAS3|A0A060QAS3_9PROT RNA polymerase sigma factor RpoD OS=Saccharibacter sp. AM169 GN=rpoD PE=3 SV=1
--------------------SSPLDVQSSAVKKLIAKGRSAGHITFDELNAILPQDKMS-EQIEDVMAALSEMGIQVVESVDKEEEEGSSEDRS------
-SDDEANGG------------NVDAVAASRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRGEMIGGLCRSPLTFQSILGWYEQLKNETLLLREVID
LEASQSD-PESPEDME-DLTS----------------D-------ESEGDGSGSERPDIMLLFEAFEPLYQKLIKMQSQRLKVLLEGRSPSDTDEKKYNK
LRTELVALVERMRLHNNRIEELVQSLKAHVQKLNAVEGRMLRLAETCKIPREDFMDRYRHQELAP-WIEGICQ-----LKTLTSKHLPALEKMRDEVAAL
AKETGLPVDEFRLVYQTISRGERDSTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
KTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0P0YI25|A0A0P0YI25_9PROT DNA-directed RNA polymerase sigma factor RpoD/sigma70 OS=Asaia bogorensis NBRC 16594 GN=rpoD PE=4 SV=1
-------------------DTNVLDTQSGAVKRLIAKGRERGHITFDELNAVLPQDQMS-EQIEDIMAIFSEMGIQVVENEENEDSDEAEEKTE------
-ESEESPTG------------NVS-ESAGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHDKLKEGEMLLRDIVD
LEAMQGG-PSEEETAE-SEN-----------------L-------DEEEEGGDPEKPEILAHFEAIEPLYDTLRALQVRRIETLTSGSETSGSSEHEYET
LRMELVKMVEQVHLHNNRIEELVTQLKVQFQRLNNLEGRMLRMAEGCRVSRDDFLQKYRGYELDP-WLASVSA-----LKNFTTRYAEQIIDLRNQVADL
AHSTGLPVGEFRRVYAVVSRGERDTTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D6MJ65|A0A0D6MJ65_9PROT RNA polymerase sigma factor RpoD OS=Tanticharoenia sakaeratensis NBRC 103193 GN=rpoD PE=3 SV=1
-------------------DTTLLDTQSGAVKRLIAKGRERGYITFDELNAVLPQDQMS-EQIEDIMAGLSEMGIQVVENEDNEEQEAPREEKE------
-DNEEQQSG------------NVDAESVGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHDRLKDGEMLLRDIVD
LEATQSG-GVTPGEGN-PEA-----------------F-------DTEEEGSEQEKPEILARFEAIEPLYHKLRKLQVKRIETLTSGETSSDKSEKSYEK
LREELVGMVEQVHLHNNRIEELVMQLKLNFQQLNGLEGRMLRLAESCRVSREDFLIKYRNHELDP-WVETVSA-----LKNFVARHMDQVTNLRAQVADL
SHEVGLPVGEFRRVYATVSRGERDSTRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKAAVIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0Q7SAQ6|A0A0Q7SAQ6_9CAUL RNA polymerase subunit sigma OS=Brevundimonas sp. Root1423 GN=ASD25_06835 PE=4 SV=1
-------------------DGPLLDLTDAGVKKFIKQAKARGYVTMEDLNKVLPSEEVT-DAIEDTLAMLSEMGVNVVEAEEDAAE----TT------KE
---AETNVA---------E--TPAKAAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDAMISGLCESALTFEAIMVWRDELANNRILLREVID
LDATYGVLNPSSLPHN-QPPA--------------------AEPKPETEDEDFDDRDGVMEVLDAVASDFGAFRKLQDKLVESRLKGEVLSPKDQKAYDT
LTSTISGRLKTMKLNNHRIEALVEQLYAINKRLMGLEGRLLRLADSYGISRPEFLKSYFGAELDP-WADRVK------ETKFSDNEQAQIAQIRGDVAAV
ATEAGLPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|W6I5X8|W6I5X8_9PROT RNA polymerase sigma factor RpoD OS=Granulibacter bethesdensis CGDNIH3 GN=rpoD PE=3 SV=1
-------------------ETTLLDTQSASVKRLIARGKERGYITFDELNAVLPSEQNS-EQIEDVMANLSEMGIQVVESEETEESGEPAARA-------
-TEDEERSG------------NVDEESLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGLCESPLTFRAIITWHERLKAGEMLLRDIID
LEATQGG-PPPGVVEG-GEEG----------------P-------PPPEDGDDADKPETLQRFEEIEAIYKKLSKMQSKRLDSFTSGEEVTARSEKTYEK
MRDELVAKVSEVRLHNGRVEELVLQLKQLNQRLTGLEGQLLRLAESCKVPRDSFLEQHRNHELEP-WLERVST-----LKNFSARYPQEVGQIRGRIGEV
AADAGLPIPEFLRVYKTVNRGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPQPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKAAIIPLDAAIQANLREATTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|D5RIN7|D5RIN7_9PROT RNA polymerase sigma factor RpoD OS=Roseomonas cervicalis ATCC 49957 GN=rpoD PE=3 SV=1
-------------------EGALLDILSAAVKKLIARGKERGYVTYDELNQALPSEEVS-ELIEDTMAMLSELGINVVEAEETEEAEGAAKPAA------
-DEEEEGGG------------NVDEESLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGLCESPLTFQAILTWHNAVKEGRMLLRDVID
LEATAAA-ENPEAA-------------------------------APDEEGEEGEKPEALATFEAIEELYGKLQKLSLKRMEAYTAGEEFASRTEKTYEK
QRLELVALVEKVQLHNNRIEELVDQLKGLNRRITSLEGQVLRLAEGSRVKREDFLQYWRGAEIDP-WFERISA-----LKNFIERSRQDVEQIRTQLSNT
AALTGLPVDEFKRVYATVSRGERDMTQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPQPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKAAIIPLDAAIQSNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|G9ZXM5|G9ZXM5_9PROT RNA polymerase sigma factor RpoD OS=Acetobacteraceae bacterium AT-5844 GN=rpoD PE=3 SV=1
-------------------EGALLDTLSAAVKKLVARGKERGYVTYDELNAALPSEQVS-ELIEDTMAMLSELGINVVESEEAEDGEGKAP--A------
-ESEEEEGG------------NVNEESLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDAMIGGLCESPLTFQAILTWHEAIKDGRMLLRDVID
LEATAAA-DSPDVP-----------------------P-------SEAEEGEEGEKPEALATFEEIESLYGKLHKMQLKRMEAYTAGGGLGSKTEQAYET
LRSELVAAVEKVQLHNNRIEELVDQLKGLNRRITGFEGQILRLAEASKVKRDDFLNHWVGAEIDP-WFDRVSN-----LKTFVERSRDEVEAIRKQIGAT
AEVTGLPVNEFKRVYSAVSRGERDMTQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPQPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKAAVIPLDAAIQTNLREATTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D6PB40|A0A0D6PB40_9PROT RNA polymerase sigma factor RpoD OS=Acidisphaera rubrifaciens HS-AP3 GN=rpoD PE=3 SV=1
-------------------DTTLLDVQSAAVKRLLVRGKERGYITFDELNAVLPPDQNS-EQIEDVMSNLSEMGIQVVESEEQEEAEAAPKAE-------
-AEGEEQSG------------NVDEESLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDMMISGLCESPLTFRAIVSWHDQLKAGKMLLRDIID
LEATQGA-GAAEAAG---PEA-------------------------APEVDEDGEKPEVLATFEEIEAQYKKLQKQQTRRLETMVAGEEMNARSEKTYEK
AREELVRTVGQVRLHNNRIEELVTQLKQLNQRLTTLESQLVRMADQSKVPRDDFIKQYRGSELDP-WIERVSR-----LKAFVARHMADITQTREQIGAV
ATEAGLSIAEFRRVFATVSRGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKAAVIPLDAAIQANLREATTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|B3R179|B3R179_CUPTR RNA polymerase sigma factor RpoD OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpoD2 PE=3 SV=1
-------------------PTAEAAARSQQLRALIQLGRQRGYLTHADISDHLPENFTD-AAMESIVGTFAEMGVKIYEQTPDAETLLLSD-GPVVASDE
E--EEAEVA---------L--ATVDSEFGRTTDPVRMYMREMSSATLLTRKQEVEIAKRIEDGLNNMVHAISACPFTIATILELSAKVASNEIGIDDVVD
GLSDESIAEP-AAAAA--D--D------SAD------SADEGSSGQQ-EADLARLFARVAE-------QFERMRAESEAG-----------GAATPAFAA
ARDAVREELRTIRFTARTIERLCANVQGMVDEVRAIERQVVQLLVERCGMREDVIARFPGNETNL-WGQG---VADRPYSAAVARALPDLEAHQQKLIDI
QARAALSLAELKAVNRKMLAAERQMRQAKHEMTQANLRLVISIAKKYTNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRAIADQA
RTIRVPVHMIEQINKLNRLSREIMQQTGKEPDPAVLAERLDMTEDKVRSIMKIAKEPVSMETPVGEDGDTSLGDMIADSDTATPADAALQAGLRAVVREM
LDELSPREAKVLRMRFGIDMSTDYTLEEVGKQFDVTRERIRQIESKAMKKLRHPSRADQLITYLR-
>tr|A0A0F0FK59|A0A0F0FK59_9BURK RNA polymerase sigma factor RpoD OS=Burkholderiaceae bacterium 16 GN=rpoD PE=3 SV=1
-------------------PATEATERSQQLRALIQLGRERGYLTHADISDHLQGNFTD-AAMESIVSTFAEMGVTIYEQTPDAEALLLRD-SAVAASDD
D--EEAEVA---------L--STVDSEFGRTTDPVRMYMREMSSATLLTRKQEVEIAKRIEDGLNRMVHAIAACPSTIATILELSQRVERDEIRIDELVD
GLIEGEAEVAA---E---A--E------VAA------DSDEGASAQA-SAALSKLFARVAD-------HFEAMRKAYTAH-----------GVESEGFLM
AQLAVREELSSIRFTAKTIERLCADVQAVVEEVRVVERQILQLMVERCGMREEFIERFPGNETNL-WGRS---AASRSYSDSVGRSLPDLESHQQKLVDI
HARAVLPLSELKLVNRQMLTAERQMRQAKHEMTQANLRLVISIAKKYVNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRAIADQA
RTIRVPVHMIETINKLNRISREIMQRTGKAADPAALAERMEMPEEKVRSIMKIAKEPVSMETPVGEDGDTSLGDMIADSDTASPAEAALHASLRATVREM
LDDLTPREAKVLRMRFGIDMSTDYTLEEVGKQFDVTRERIRQIESKAMKKMRHPSRADHLKAFLK-
>tr|Q470R8|Q470R8_CUPPJ RNA polymerase sigma factor RpoD OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpoD PE=3 SV=1
-------------------SPDEANARTQQLRALIQLGRQRGYLTHADISDHLQENFTD-AAMESIVTTFAEMGVKIFEQTPDAETLLLSD-NAVVASDD
D--EEAEVA---------L--STVDSEFGRTTDPVRMYMREMSSATLLTRKEEVELAKRIEDGLNNMVHAISACPSTIATILELSGRVASAEMGIDDLVD
GLTDESGADAPVTASA--D--D------TAD------DDAEEGSTQQ-EADLAKLFARVSE-------QFELMRQEYAAN-----------GSGSAGFVT
ARDTVRDELRTIRFTAKTIERLCADVQSMVDDVRVVERQVVQLLVDRCGMREDVIARFPGNETNL-WGRD---AASRPYSAAVARALPDLEAHQQKLIDI
QARAALPLAELKAVNRKMLAAERQMRQAKHEMTQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRAIADQA
RTIRVPVHMIEQINKLNRLSRELMQQTGKEPDPAVLAERMDMPEEKVRAIMKIAREPVSMETPVGEDGDTSLGDMIADSDTATPADAALQASLREVVREM
LDELTPREAKVLRMRFGIDMATDYTLEEVGKQFDVTRERIRQIESKAMRKLRHPSRADQLITYLR-
>tr|U3QK76|U3QK76_RALPI RNA polymerase sigma factor RpoD OS=Ralstonia pickettii DTP0602 GN=rpoD PE=3 SV=1
-------------------PSTEATERSQQLRALIQLGRQRGYLTHADISDHLPENFTD-AAMESIISTFAEMGVKIYEQTPDAETLLLSD-GAVVASDE
D--EEAEVA---------L--STVDSEFGRTTDPVRMYMREMSSATLLTRKQEVELAKRIEDGLNNMVHAISACPSTIETILELSGRVASNEIGIDELVD
GLSDESIPEP-AAAAG--A--D------SSD------STD-EASTQQ-EADLAQLFARVTE-------QFELMRKEAA-N-----------GTSSAAFVS
ARDAVRDELRTIRFTAKTIERLCASVQAMVDEVRTVERQVVQLLVERCGMREEVVARFPGNETNL-WGKD---AASRPYSAAVARALPDLEAHQQKLIDI
QARAALPLPELKTVNRKMLAAERQMRQAKHEMTQANLRLVISIAKKYTNRGMQFLDLIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRAIADQA
RTIRVPVHMIEQINKLNRLSREIMQQTGKEADPAVLAERMEIPEEKVRAIMKIAKEPVSMETPVGEDGDTSLGDMIADSDTATPADAALQAGLRAVVREM
LDELTPREAKVLRMRFGIDMSTDYTLEEVGKQFDVTRERIRQIESKAMKKLRHPSRADQLITYLR-
>tr|A0A0D6N0D6|A0A0D6N0D6_9PROT RNA polymerase sigma factor RpoD OS=Acetobacter cibinongensis 4H-1 GN=rpoD PE=3 SV=1
-------------------DTTTLDTQSGAVKKLIAKGRERGCITFDELNAVLPQDKMS-EQIEDIMAMLSEMGIQVVENEESDDSEGTKGEKA----DE
-ESSESPAG------------NVNTENLGRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHEMIRNSEMLLRDIVD
LEAMQAG-GNPPE-EA-ESGF----------------P-------DAEEGEAEGEKPEILAHFDDIGPLYEKLRKVQVLRIEALTAGEEVLDQSEADYAA
LRDELVGKVEQIHLHSNRIEDLVMQLKEMFRSLNVLEGRMLRLAESCRVSREDFLLKYRGRELDP-WMEMISG-----LKNFVAKHSDTVVDLRNQVAEL
AQETGLPIGEFRRVYATVARGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAVIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|E3D6U4|E3D6U4_NEIM7 RNA polymerase sigma factor RpoD OS=Neisseria meningitidis serogroup B (strain alpha710) GN=rpoD PE=3 SV=1
-------------------RPLTIEEQRARLRQLIIMGKERGYITYSEINDALPDDMSD-DQIDNIVSMISGLGIQVTEHAPDAEDILLSDNAA------
-AVEEAEAA---------L--SSADSEFGRTTDPVRMYMREMGQVDLLTREDEIIIAKKIENALKNMVQAISACPGSIAEILELIEK-IR-EIRVDEVVE
A---IIDPNEV--LLN-EL-------------GLGHLPSN---DNSDEDEESEEDKQKVIGHFAQIEKDYKKMIGRLEKHHS------RHKD-----YLA
YRDAIANKLLEVRFATRQIDSLSSSLRGKVENIRKLEREIRDICDRVHMERDYFIQNFLPEITNL-WIEEEIA-----KSDALDRFRHAILEKQTELADM
EKETRISIEELKEINKNMVSSEKETAAAKQEMIQANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQETGEEPDSAKLAELMQMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDANNVAPADAAMYTSLHEVTKEI
LESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPTRSDRLRSFLD-
>tr|A0A0N8K867|A0A0N8K867_9RHOB RNA polymerase primary sigma factor RpoD OS=Rhodobacteraceae bacterium HLUCCA08 GN=rpoD PE=4 SV=1
-------------------GDISIDMSQSAVKKMIAEARERGYITYDQLNQVLPPDQVS-DQIEDVMSMLSEMGIQVTEDDEPD--DDDQKGS-------
KSAGGEVAV---------S--AQETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFGNQLDEGEE------P----------EAR---LDADGNPIAKD--DDEDDKPRVLETLDTIAHDFALLSDMQDARMSATLEDGSFTDTNEEDYQK
LRAEIVQLVNSLHLHNNRIEALIDQLYGINRRIMSIDSSMVKLADQARINRREFVDEYKGRELDP-WLDEMAD-----KQMFIERSRDKVEELRAEMAQV
GQYVGVDIGEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|S9QMC8|S9QMC8_9RHOB RNA polymerase sigma factor RpoD OS=Litoreibacter arenae DSM 19593 GN=rpoD PE=3 SV=1
-------------------AAAGLDMSQAAVKKMIAEARVRGYITYDQLNQVLPPEQVA-EQIEDVMSMLSEMGINIIEEEEAEDDGST-----------
NNSAKDVVL---------A--SSTTETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFGNTLEEEEETE--T------------KSG---LDADGNPIVRE-DEDEDEKPRVLETLDIIADDYMKLADMQDLRISAAIHDDTFTKKEESAYQA
LRTEIVTMVNSLHLHNNRIEALIDQLYGINRRIMSIDSSMVKLADQARINRREFIDEYRGYELDP-WVERITA-----KTALMERSRDKVEDLRAEMAQV
GQYVGVDITEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A037ZGQ1|A0A037ZGQ1_9RHOB RNA polymerase sigma factor RpoD OS=Actibacterium mucosum KCTC 23349 GN=rpoD PE=3 SV=1
-------------------QDVSLDMSQAAVKKMIGDARERGYITYEQLNQVLPPDQVS-EQIEDVMSMLSEMGINIIEEEEAEDEE--QKGS-------
TSNSREVTV---------A--QTETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMISGLCESPLTFQAITIWRDELLSEDILLRDVID
LDATFGRSMDGEEDDT-APVA----------PKA---LDADGNPIKAE--DDEDEKPQVLETLDLIARDYAMLSEMQDMRMSATLEDDSFSDKEEAAYQK
LRQEIVDLVNELHLHNNRIEALIDQLYGINRKIMSIDSGMVKLADQARINRREFVEEYKGSELDP-WMERMAA-----KQAFTERSQDKVEELRAEMAQV
GQYVGVDIGEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A076K606|A0A076K606_9RHOB RNA polymerase sigma factor RpoD OS=Planktomarina temperata RCA23 GN=rpoD PE=3 SV=1
-------------------KEPMIDMSQTAVKKMIGDARERGYITYDQLNTVLPPDQVS-DQIEDVMSMLSEMGIQVTEEHESE--EDEDKGP-------
SNQNRDVAL---------A--GANNEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFGHHMGEEEET-----P----------SSA---LDADGNPIIAD--D--DEKPKVLETLDLIASDYILLSEMQDVRISATLEDESFSDGAEAKYQK
LRSEIVELVNELHLHNNRIEALIDQLYGINRRVMSIDSSMVKLADQARINRREFIDAYRGRELDP-WLTDMGE-----KTMFMERSVDKVEELRAEMAQV
GQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0L1JLL8|A0A0L1JLL8_9RHOB RNA polymerase sigma factor RpoD OS=Aestuariivita atlantica GN=rpoD PE=3 SV=1
-------------------NEISLDMSQAAVKKMIAEARERGYITYDQLNTVLPPDQVS-DQIEDVMSMLSEMGIQVTEDDEEA--EDEDKGS-------
TAQNKEVAL---------S--SGETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFSGQMGEDGEV---EEP----------AAK---LDADGNPIAKD--DDDDEKPQVLETLDRIAEDYGKLAEMQDSRISATLEDGSFSSKQEDAYQA
LRSEIVELVNELHLHNNRIEALIDQLYGINRRIMQIDSSIVKLADQARINRKEFVDEYRGRELDP-WLDDMAK-----KQMFMERSADKVEDLRGDMAQV
GQYVGVDITEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELADKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|U4V7M5|U4V7M5_9RHOB RNA polymerase sigma factor RpoD OS=Rhodobacteraceae bacterium HIMB11 GN=rpoD PE=3 SV=1
-------------------TEVSLDMSQAQIKRMIAEARERGYITYDQLNTVLPPDQVS-EQIEDVMSMLSEMGINIIEDDEVEDE---DRGP-------
T-GTKDVAV---------S--TGETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWREELLNEDILLRDVID
LEATFGNQMDEDGVE-----P----------ANK---YDADGNPIAKD--DDDDEKPKVLETLERIAIDYERLSEMQDIRISATLEGAAMTDKEEATYQA
LRSEIVDLVNELHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRREFIEEYRGRELDP-WLDDMAE-----KQMFIERSREKAEDLRSDMAQV
GQYVGLDISEFRRIVSQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0P8BK95|A0A0P8BK95_9RHOB RNA polymerase primary sigma factor RpoD OS=Rhodobacteraceae bacterium HLUCCA09 GN=rpoD PE=4 SV=1
-------------------PEMSLDMSQAAVKKMIAEARERGYITYDQLNAVLPPDQTS-EQIEDVMSMLSDMGINVIEDDEAEDEE--SKKS-------
TSTSREVAV---------S--TTESEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEEILLRDVID
LEATFGRGLGEEEEEE-PVVA----------QKQ---LDADGNPIAKD--DDDDEKPRVLETLDRIAVDFTQLEEMQDRRMSATLEDGTFGTGDEERYQK
LRSEIVQLVKELHLHNNRIEALIDQLYGINRRIMSIDSAMVKLADQARINRREFIEAYRGSELDP-WVDRMRE-----KAALLERSSAKVGELRSEMAQV
GQYVGVDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0F2S1R8|A0A0F2S1R8_9RHOB RNA polymerase sigma factor RpoD OS=Roseovarius sp. BRH_c41 GN=rpoD PE=3 SV=1
-------------------TEVSLDMSQAAVKRMIAEAREKGFITYDQLNEVLPPDQVS-EQIEDVMSMLSEMGINIIEAEDAE-EEEG--RS-------
IGRRGEITL---------G--SGKEEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLGEDILLRDVID
LEATFGTQLGDEDAE-----P----------GRD---LDADGNPIHSD--DEEDEKPRVLETLDRIADDYAKLSEMQDSRISATLEDGSFSREQEQTYQT
LRSEIVELVNELHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRSEFVEEYRGRELDP-WLDDMAR-----KQMFIERSPEKVSELRADMAQV
GQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNVILPLDSAIQDNLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|Q5LSL7|Q5LSL7_RUEPO RNA polymerase sigma factor RpoD OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpoD PE=3 SV=1
-------------------DEVSLDMSQAQVKKMIAEAREKGYITYDQLNQVLPPDQVS-EQIEDVMSMLSEMGINIIEDEEAE--EEEQKGS-------
TESNREVAL---------A--GAQAEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDVID
LEATFGNQLDDED-D---E-P----------PQR---YDADGNPIVTE--EDEDDKDKVLITLERISSDYAQLSEMQDSRISATLEDGSFSAHDEATYQS
LRSEIVLLVNELHLHNNRIEALIDQLYGINKRVMSIDSSMVKLADQARINRREFIDAYRGRELDP-WLAEMAE-----KQMFIERSSDKVEELRADMAQV
GQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0P1FEA9|A0A0P1FEA9_9RHOB Sigma-70 OS=Shimia marina GN=rpoD PE=4 SV=1
-------------------AEISLDMSQAAVKKMIAEAREKGYITYDQLNQVLPPDQVS-EQIEDVMSMLSEMGINIIEDEDAE--EEEAKST-------
SSANRGVAI---------A--SGNNEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFGNQMGEDGDEE-EESP----------KKE---LDADGNPIAKD--DDEDEKPRVLETLDIIARDFAMLSDMQDARISATLEDGSFSDTDEETYQK
LRSEIVELVNELHLHNNRIEALIDQLYGINRRIMQIDSSMVKLADQARINRREFIDAYRGRELDP-WLEDMSE-----KQMFMERSQDKVLELRNDMAQV
GQYVGLDIPEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|B6AZK2|B6AZK2_9RHOB RNA polymerase sigma factor RpoD OS=Rhodobacteraceae bacterium HTCC2083 GN=rpoD PE=3 SV=1
-------------------SAHTLDMSQTAVKKMIADARERGFITYDQLNAVLPPDQVS-DQIEDVMSMLSEMGIQVTEEDEDA--EEEDKGT-------
AGTNKEVAV---------S--TAASEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LEATFGDQMGEEETT-----P----------PKA---LDADGNPITSD--DDEDEKPQVLESLEVIAGLYEQLSQMQDSRISATLEDDSFSDKQEANYQK
LRSEIVVLVNEMHLHNNRIEALIDQLYGINRRVMSIDSSIVKLADQARINRREFVEAYRGRELDP-WLEEMAG-----KQMFIERSTDKVEELRADMAQV
GQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|G1XWA2|G1XWA2_9PROT RNA polymerase sigma factor RpoD OS=Nitrospirillum amazonense Y2 GN=rpoD PE=3 SV=1
-------------------DGPLMDGMGLAVKKMIQRGKERGFVTYDELNAALPPDQSS-EQIEDTMAMLNEMGINVIESEEQDSEAGGEGG--------
-DGEGRVSG------------NLDDDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGAICESPLTIRAIIQWHEALNEGKMLLRDIID
LDATYGV-DPESGELT-EAVL----------------ERPEGG-EGG--GEGGEEKPMVLETFQTIEDTYDKLHKMQELRLAAIQRGEDLGKAQDKKYDK
LKAELTELVNSVRLNNTRIEALVEQLYGMNRRLMGFEGKLLRLATDCKVKREDFLHHYYGSELDP-WLDRVKG-----NAKFAERSANEIVKVREGINEI
AEGVRLPISEFRRIVSTVQKGEKEASRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|B6INX9|B6INX9_RHOCS RNA polymerase sigma factor RpoD OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpoD PE=3 SV=1
-------------------NGPLMDNMAIAVKKMIQRGKERGYVTYDELNAALPPDQSS-EQIEDTMAQLSEMGINVVEGEEPEDGQ--DAS--------
-DGEGRVSG------------NLDDDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGAICESPLTIRAIIEWHQSLMEGKMLLRDIID
LDATYGI-DPESGEPT-GEDL----------------ERPEG--AEG---EGGDEKPKVIETFARIEETYEKLHKVQEQRLAVLQRGEELPKGSDKKYDK
LKAELTDLVNSVRLNNARIEQLVEQLYGLNRKLLGYEGKLLRLATDCKIKREDFLHHYYGSELDP-WLERCRG-----LGRFADKSSVEVGRVREAISEV
ADQVRLPIGEFRRIVSTVQKGEKEASRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRI
LATLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0N1LN75|A0A0N1LN75_9PROT RNA polymerase sigma factor RpoD OS=alpha proteobacterium AAP38 GN=rpoD PE=3 SV=1
-------------------NGPLMDGMAIAVKKMIARGKERGYVTYDELNAALPPDSSS-EQIEDTMALLSEMGINVVEAEEADESS--GNE--------
-EGEGRQSG------------NLDDDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGAICESPLTIQAIIEWHQSLQDGKMLLRDIID
LDASYGV-DPEAGELP-PEAL----------------ERPEGE-GEG--AGDGEEKPKVLETFGKIEETYERLHKMQEERLGLLQSGQELPKGSDKKYDK
VKAELTELVNSVRLNNGRIEQLVEQLYALNRKLLGFEGRLLRLATDCRVKREDFLQHYYGSELDP-WLDRCKS-----IAKFAERSSYEVGRVRESIAEV
SSQARLPIGEFRRIVSTVQKGEKEASRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRI
LATLTAREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0K2D9E4|A0A0K2D9E4_9RHIZ RNA polymerase sigma factor RpoD OS=Chelatococcus sp. CO-6 GN=rpoD PE=3 SV=1
-------------------DSPLLDLTDAAVKRMIKLAKKRGYVTYDELNEVLPSEEFS-EQIEDVLAQLNEMGINVIESEEADDANAE-------GGVD
-TRSALPAK---------V--ETKSEPAERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVEGRVLLRDIID
LEATYADPEGKGTPRV-AEDG--------------------ESAIA-EDMDEDDMKPRVLETFDSIAENYKKLRRLQDQDIENRLQNLKLSPSQERKYKK
LKDDIIVDVKSLSLNQNRIDALVEQLYDINKRLIGLEGRLMRLAESYGVAREDFLRQHQGAELDP-WVLRVSK-----LRDFVANEKDRIKDLRQEIQTL
ASETGLEILEFRKIVAMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPVSLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|V5SCV3|V5SCV3_9RHIZ RNA polymerase sigma factor RpoD OS=Hyphomicrobium nitrativorans NL23 GN=rpoD PE=3 SV=1
-------------------DSPLLDLSDQAVKRLLKTAKARGYVTLDELNSVLPSEEVS-DQIEDTMAMLSDMGINVVETDEGEEGADAAEG------EE
--A-GLPAR---------S--ETRAEPAERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNDGKILLRDIID
LEATYEGPEAKAPPAV-AGDS-------------------------EANDDDDEYKPKVLETFDNIANTYKKLRKQQDKKLEQQVAGESGSRQQQKAYDK
LREEIIADVKSLSLNNARIESLVEQLYSINRRLVGLEGRLMRLADSYGVARLVFIDEYFGNELDQ-WLDRMAE-----NGQLVKNERPTIEQIRKEIHEL
ATETGLEITEYRRIVKAVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDRNAVLPDQAAIAANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D6JIY7|A0A0D6JIY7_9RHIZ RNA polymerase sigma factor RpoD OS=Candidatus Filomicrobium marinum GN=rpoD PE=3 SV=1
-------------------DSPLLDMSDQAVKRFIKAGKARGYVTYEELNTVLPSEEVS-DQIEDLYAMLADMGINVVESDDTEEREGEEQS------GE
-TTQAVPAR---------A--ETKSEPSERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWHDELNDGRILLRDIID
LEATYEGPEAKEAGEA-ESAN----------------E-A-NAEGA-EDEEDF--KPKVLETFERIASNYKKLRKQQDRMLEQQVAGDQASSQQQRAYDK
LRDEIITDVKSLSLNNNRIESLVEQLYAINKRLVGFEGRLMRLADSCGVSRQAFIGEYFGNELDQ-WLDRMA------QANFINNERAQIDVIRGDIHEL
ASETGLEIPEFRRIVKAVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDRNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|N0BCL1|N0BCL1_9RHIZ RNA polymerase sigma factor RpoD OS=Hyphomicrobium denitrificans 1NES1 GN=rpoD PE=3 SV=1
-------------------DSPLLDLSDQAVKRLLKSAKAKGYVTLDQLNSVLPSEEVS-DQIEDLYATLSDMGITVVENEDGEEAAEAAEE------GE
-AQNNALVK---------S--ETKSEPAERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKILLRDIID
LEATYEGPEAKEVAET-ASED----------------R-P-SGAPE-GDEDEF--KPKVLETFDKIAATYKKLRKQQDKKLEQQLVGDQGSRQQQKAYEK
IRDEIIVDVKSLSLNNNRIESLVEQLYAINKRLIGLEGRLMRLADSYGVPRQHFIDEYYGNELDQ-WLDRVA------GGQFVKSERVQVEDIRAEIHQL
ATETGLEIPEYRRIVKAVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDRNAVLPIEAAIQSNLRDTTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D6AZ96|A0A0D6AZ96_RHOSU RNA polymerase sigma factor RpoD OS=Rhodovulum sulfidophilum GN=rpoD PE=3 SV=1
-------------------ADLALDMSQAAVKKMIAEAKERGYITYDQLNQVLPPEQVS-EQIEDVMSMLSEMGINIIEAEESAEEG--EEKS-------
TSTSREVAV---------S--STTSETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLNEDILLRDVID
LDATFGRALEEDEGDE-PVVD----------SKE---LDADGNPIRRE--DDEEEKPRVLEKLDQIAGDYSKLSEIQDKRIQATLKTSRFSDRDEAEYQK
LRTEIVLLVNELHLHNNRIEALIDQLYGINRKIMSIDSALVKLADQARINRREFIEEYRGHELDP-WMEQMAR-----KSAFTERSGAKVAELRADMAQV
GQYVGVDIQEFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKHAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A059FE57|A0A059FE57_9RHOB RNA polymerase sigma factor RpoD OS=Hyphomonas hirschiana VP5 GN=rpoD PE=3 SV=1
-------------------ESGLVDFNATDVKKVLKRAQKRGFITHDEINQLLPDSDMS-DQIEDVMSQISEMGIAVVETEEEAEEQGKALTKI------
-KKVVAK--------------KGNARGSDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDAMIRGLCESPLTFEAMMVWRDELMNERILLRDLID
LEATYGA-ENPPPEPK-PVEE----------KKRSAEE---R-MRQQ-EEEEEDDREGVLAKLDEIADAFSRFRKLQDRLLVRRIEGKDLTPKAQGEYDD
LSLQIVDNLKTIHINNARIEALVEQLYAINKKLMGLEGKLMRLADAHGVPRKEFLHNYIGSELEP-WAERVRE-----IKRLVDGKGEEVQVVRDEISEI
AQEIGIPIDDFRRIVQTVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIIRTQRQMLHEIGREPTPEELAEKLGLPLEKIRKVLKIAKEPISLETPIGDDEDSNLGDFIEDKMALLPVDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0Q6F978|A0A0Q6F978_9RHIZ RNA polymerase subunit sigma OS=Methylobacterium sp. Leaf469 GN=ASG60_14485 PE=4 SV=1
-------------------DGPLLDLTDASVKRMVKLAKKRGYITYEEINEVLPDGQSD-DQIEDVLSQLSEMGINVVEAEETEETAGETKAN--GEAAE
-PTKAPAVR---------E--TTTKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVDGRVLLREIID
LEATYAGPDAKNAMQI-AEGG----------------------ETP-AGDDEDDMKPRVLETFDNIANNYKKLRKLQSEHAEVKASGKTLTEAQAAKRDE
LKDIVVTDVKSLSLNANRIEALVEQLYDINKRLISHEGRLMRYAETHGVARDEFLRHYQGWELDP-WMERVGS-----LKNLVEKGQKEVVRLREQILTL
ASETGLEIGEYRKIVNMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|M2SB15|M2SB15_9PROT RNA polymerase sigma factor RpoD OS=alpha proteobacterium JLT2015 GN=rpoD PE=3 SV=1
-------------------DAPLIDMNDAAIKKMIARAKKRGWITYEELNEALPQDQMS-EQIEDIMSALSEMGINVTESEEDEDEDDGTPAAADQ----
GDGGETKFV---------A--TRTKEKLDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIMGLCESPLTFSSIIYWAEAVKAGEMQLREILD
LEAMLNQGPT-EDEVN-ADSD----------------DDEDGDSG-KSSKGDDDDTPQALEQFDDIQRVYEKFQTLQDERLEAMHAGSDYDDKLERKYQA
LRSELTDKVEAVFFNNAKIEFLVEQMYSYNKRLMSLSGQMLRLAERYKIPRRDFLDTYVGNELDE-WIDSVKD-----RQSFAEGEGQAIENVRLQVADI
AAQTGVELGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEFGREPTPEEMAERLGMPLDKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAIIPVDAAVHSNLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0P8YAW9|A0A0P8YAW9_9RHOB RNA polymerase sigma factor rpoD OS=Marinosulfonomonas sp. PRT-SC04 GN=JI58_05755 PE=4 SV=1
-------------------KDEIADTGQAAVKKMIAQGRERGYITYDQLNKVLPPDHVS-EQIEDVMSMLSEMGINIIENDEEEEKAS------------
TSGSSEITL---------T--VTGGEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFNAITIWRDELLSEDILLRDVID
LETTFGDTMGEETEE---E-P----------DKP---MDADGNPIAQD-DDDEGEKPRVLETLDLIARDYALLSEMQDARLSATLEDKSFSKKAETKYQK
LRTEIVTLVNELHLHNNRIEALIDQMYGVNRKIMSIDSNMVKLADQARINRREFIEAYRDHELDP-WMEQMGQ-----KQALLERSTPKIEELRGEMTQV
GQYIGLDIPEFRRIVHQVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLKMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D1D9H7|A0A0D1D9H7_9RHOB RNA polymerase sigma factor RpoD OS=Jannaschia aquimarina GN=rpoD PE=3 SV=1
-------------------DGHSLDMSQAAVKRMIAEARAKGYITYDQLNAVLPPDQVS-EQIEDVMSMLSEMGINIVEAEEAEEESDDKNPS------A
ASKGRDVAL---------G--SEQTEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFGNQLDGEEDT-----P----------QPK---VDADGNPLATD--DDDDDKPRALETLDRIADDYAKLADMQDQRISATLEDGSFGDKAEEKYQA
LRSEIVELVNSLHLHNGRIEALIDQLYGINRRIMSIDSGMVKLADQARINRREFIEAYRGSELDP-WLDRISE-----KQMLLDRSRDKIEELRGDMAMV
GQYVGVDISEFRRIVAQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAAKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|K2HEE9|K2HEE9_9RHOB RNA polymerase sigma factor RpoD OS=Oceaniovalibus guishaninsula JLT2003 GN=rpoD PE=3 SV=1
-------------------GEVMLDMSQAAVKKMIADARERGYITYDQLNQVLPPEQVS-EQIEDVMSMLSEMGINIIEDEDAEEEE--RKGS-------
TSNSREVAV---------S--TTESEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFGRQMGEEGEED-ASA-----------AKA---VDADGNPIRQD--DDDDDKPRVLEMLDVIATDYAQLAEMQDLRMSATLEDGSFSGEAESRYQT
LRSEIVLLVNELHLHNNRIEALIDQLYGINRKIMAIDSSLVKLADQARINRREFVEAYRGYELDP-WLDRMAQ-----QQAFIERSSDKIEELRGDMAQV
GQYVGVDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A3JWM9|A3JWM9_9RHOB RNA polymerase sigma factor RpoD OS=Rhodobacteraceae bacterium HTCC2150 GN=rpoD PE=3 SV=1
-------------------NDGMTDTSQTAVKKMIAEARVKGYITYDQLNAVLPPEQVS-EQIEDVMSMLSEMGINIIEDEEAEDEVKS-----------
TDQERGLVL---------A--GADKEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRKTMILGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFGNTMGEEGEDG-VTA-----------SGE---LDADGNPISND--DDEDEKPRVLETLEEIADYYAELSDMQDVRISATLESESYSSKEEDAYQA
LRTKIVDLVTSMHLHNNRIEALIDQLYGINRRIMQIDSSMVKLADQARINRKEFIDAYRGHELDP-WLETIAE-----LAAFLERSADKVSELRTEMAQV
GTYVGLDISEFRRIVQQVQKGEKEARAAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAKKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|S9R0X2|S9R0X2_9RHOB RNA polymerase sigma factor RpoD OS=Rubellimicrobium thermophilum DSM 16684 GN=rpoD PE=3 SV=1
-------------------GDLSLDMSQAAVKRMIAEARERGYITYDQLNAVLPPDQVS-DQIEDVMAMLSEMGIQVTEEEEPEETGEEEASS-------
VIGGRDLAL---------T--GGETERLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRNELLDESILLRDVID
LEATFGTQIGGDDGI---E-P----------GRR---FDADGNPILRD--EDDEDKPRVLETLDAIARDFARLSEMQDARMSATLEDGSFDSEQEAAYQK
LRSEIVAQVNSLHLDSRRIEALIDQLYGINKRIMAIDSAMVKLADQARINRREFIEEYKGSELDP-WLDRMAQ-----KQMLLERFRDRIEELRAEMAQV
GQYVGVDISEFRRIVAQVQKGEKEARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLDKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A017HAZ5|A0A017HAZ5_9RHOB RNA polymerase sigma factor RpoD OS=Loktanella hongkongensis DSM 17492 GN=rpoD PE=3 SV=1
-------------------GAMTLDMSQAAVKKMISEARERGYITYDQLNQVLPPDQVS-DQIEDVMSMLSEMGIQVTEAEESEEAD--DGGS-------
GGGNRDVAL---------S--GAEAEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LETTFSGQMGEEEGD---E-P----------RSA---YDADGNPIRNN--DEDDEKPRVLETLDTIAENFDRLSAMQDARMSATLEDASFSKANEADYQA
LRSELVILVNSLHLHNNRIEALIDQLYGINRRIMSIDSSMVKLADQARINRREFIDAYRGAELDP-WMDRMAE-----KQALFERSSGKVEELRGEMAQV
GQYVGVDIGEFRRIVQQVQKGEKEARAAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|G6EXQ7|G6EXQ7_9PROT RNA polymerase sigma factor RpoD OS=Commensalibacter intestini A911 GN=rpoD PE=3 SV=1
-------------------DTALLDVRSADVKKLISKGKERGYVTLDELNAILPQDKMS-EQIEDVMSAFSEMNIQIIENEETEDDSSDESGEE-----D
-EDGESEGA---------V--VAAESTAGRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRNQMIGGLCESPLTFKAIIGWHEQLKVGDVLLRDIVD
LEATQTE-YDQSDLSE-MENS----------------N-------DEESGEDSNEKDEIFGHFDEIEKIYTKLYQLQVQRLDVIQAGEKLTPVFENEYED
LRNKLIIEVQQVHLQSSKIDFLVEQLKTVSKKLATLEGSMLRMAEKCKISRDDFLSKYHGYELNP-WMDAVRG-----LKLFVERYEDDVNKCRDEIAEL
SQRVGLPISEFRRVFSTVSYGERDASRAKKEMIEANLRLVISIAKKYTNCGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLEIPIGDEEDSHLGDFIEDKSAVIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A074TMM2|A0A074TMM2_9RHOB RNA polymerase sigma factor RpoD OS=Thioclava dalianensis GN=rpoD PE=3 SV=1
-------------------DATSFDMSQAAVKRMIAEARERGFITYDQLNKVMPPEHVS-DQIEDVMSMLSEMGINVIEAEEADEEE--GQSSS-----A
GSGSREVAV---------S--SSSSETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLGEEILLRDVID
LETTFGNSLDEDG-EE-EVGA----------KKT---LDADGNPIQSD---DDDEKPRVLETLELIADHYIELAEMQDQRMSATLEDGSFSVTAEAAYQK
LRAEIVVLVNSLHLHNNRIEALIDQLYGINRKIMSIDSGMVKVADQARINRREFIEEYRGYELDP-WVERMQE-----KQMLFERSADKVEELRNEMAQV
GQYVGVDISEFRRIVNQVQKGEKEARSAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELADKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A1UTE2|A1UTE2_BARBK RNA polymerase sigma factor RpoD OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpoD PE=3 SV=1
-------------------DNAPLDFSDDAIKKMIKLAKKNGYVTMDELNAVLPSDEVT-EQIEDILMMFSEMGVNVVDDEDEIEAEHYE--------VE
--TSREVAT---------I---PKREATDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWREELREQRILLREIID
LEMTYAGPEAKQAPII-ERSE----------SPSDKD-----EDI-G--EDDEDDYPQIMETLNFIAETYVKLRKLQNQHVESSLKASDLSSAQKKKSTQ
LKSDLIQAVKSLSLNQNRIEALVEQLYDINKRLVHNEGKLKRIANSYGIGHEDFLKEYQGRELDS-WVNYIAT-----LKEFSTREVEVIRNLRSEIQNL
AQETAISIGEFRRIVTQVQKGEREATIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQILHEIGREPTPEELSSKLSMPLEKVQKVLKIAKEPISLETPVGDEDDSHLGDFIEDRNALLPIDAAIQANLRDTTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0L1KD34|A0A0L1KD34_9SPHN RNA polymerase sigma factor RpoD OS=Erythrobacter citreus LAMA 915 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASVKKLITKAKRKGYVTYDELNDALPQGEMS-DQIEDIQSALSDMGVQIVESDEEAEAAAEEADEVEELA--
KTAA---KP---------A--VKKAATGERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMIMGLCQSPITFHAIIQWSEALNAEEMQLREILD
LDAMLSKEPP-PEKMA-EE------------------EGEDGEEG-SSRDDEEEEKPDAIERFARITDLFGKFEKLQNERVDLMARGETFTAAKEKKYEA
LSEQLTAEVESVQFHATKIEFLVDNLYAFNRRLTALGGQMLRLAERHKVKRVDFLDAYIGNELDD-WLKERAK-----KAAFAEKEADAVERIRTEISDI
ASQTGMALEEFRRIVTKVQKGEREARIAKREMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRCSRQFLHDQGREPTPEEMAEKLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0J9E9K4|A0A0J9E9K4_9RHOB RNA polymerase sigma factor RpoD OS=Candidatus Rhodobacter lobularis GN=rpoD PE=3 SV=1
-------------------QEAMLDMSQTAVKKMIAEAREKGYITYDQLNTVLPPDQVN-EQIEDVMSMLSEMGINIIEDEEAE--EEENKGA-------
ASASREVAV---------A--ASATEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLNEDILLRDVID
LETTFGNSMDEDGEEG-TE-P----------KEA---LDADGNPIQTD--DDEDDKPRVLETLDRIADDYAMLSEMQDLRMSATLEDDSFTEKAEQKYQK
LRSEIVELVNELHLHNNRIEALIDQLYGINRRIMSIDSNMVKLADQARINRREFIDEYKGAELDP-WLDRMAE-----KQAFIERSTDKVEKLRAEMAQV
GTYVGVDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D0QBM5|A0A0D0QBM5_9RHOB RNA polymerase sigma factor RpoD OS=Wenxinia marina DSM 24838 GN=rpoD PE=3 SV=1
-------------------NDISLDMSQAAVKKMIAEARERGYITYDQLNSVLPPDQVS-DQIEDVMSMLSEMGIQVTEEEESEEVEDDAQAS-------
TTGGREVAV---------G--SGDTEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWREELLSEDILLRDVID
LEATFGNQLDGEEDEA-VVTE----------KAD---LDADGNPIQSD--EDDDEKPRVLETLERIADEFSRLSDMQDARMSATLEDSSFSEGDEASYQK
LRGELVERVNSLHLHNNRIEALIDQLYGINRRIMSIDSSMVKLADQARINRREFIDEYRGAELDP-WLDRMAE-----KQMLLERSTGKIEELRAEMAQV
GQYVGVDIQEFRRIVAQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLGGGRSAVQ--RHPRTQGAAQAEAPVAEPEAAVVPGSVS--
>tr|A0A0B5DYE2|A0A0B5DYE2_9RHOB RNA polymerase sigma factor RpoD OS=Celeribacter indicus GN=rpoD PE=3 SV=1
-------------------QDAMLDVSQAAVKKMISEAREKGYITYDQLNKVLPPEQVS-EQIEDVMSMLSEMGINVIEDEEVEDEDGAVEGEA-----R
TGGSRELAT---------A--SGETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDVID
LEATFGGGVEGDDEA---G------------EAK---YDADGNPISSD--EDDDEKPQVLETLARISSDFATLSEMQDLRMSATLEDGSFSAANEADYQT
LRGEIVALVNSLHLHNNRIEALIDQLYGINKRIMTIDSSMVKLADQARINRKEFIDEYRGAELDP-WLDRMAG-----KQMFIERHSDKVEELRSEMAMV
GQYVGVDISEFRRIVAQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDAAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|Q0F955|Q0F955_9RHOB RNA polymerase sigma factor RpoD OS=Rhodobacterales bacterium HTCC2255 GN=rpoD PE=3 SV=1
-------------------NEGMGDMSQAAVKKMIAVARERGYITYDELNDVMPPDQVA-EQIEDVMSMLSEMGINIIEADEVEDEGP------------
ANDAKEVTL---------A--ATGKETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRKTMIEGLCESPLTFQAITIWRDELLEEEILLRDVID
LETTFSDTLDDDEDPM-VG------------PSS---LDADGNRLNDDEDEDEDDKPDVLATLAKIAKDYNKLASMQDERISATIEDDTFSDKSEKSYQK
LRNSLVEQVNALHFHNNRIDALIDQLYGINRKIMSIDSGMVKIADQSRINRREFVDKYRGQELDP-WLDKIAE-----EKTFIEKHREKAEELRADMAQV
GHYVGVDIPEFRRIVNQVQKGEKEARSAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELASKLQMPLDKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLESAIQGNLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|W8RSI4|W8RSI4_9RHOB RNA polymerase sigma factor RpoD OS=Roseibacterium elongatum DSM 19469 GN=rpoD PE=3 SV=1
-------------------PEIGLDMSQAAVKKMIAEAKARGYITYDQLNTVLPPEQVS-EQIEDVMSMLSEMGINVIEDEEAEDTD--EQKE-------
TSTSREVAV---------A--QTETEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLDEDILLRDVID
LDATFGNQLDDEEDSA-PVVE----------EAK---LDADGNPIAKD--DDEDEKPRVLETLDRIADDYARLAEMQDLRISATLEDASFSTDDEAEYQQ
LRSEIVELVNELHLHNNRIEALIDQLYGINRRIMSIDSAMVKLADQARINRREFIEEYRGSELDP-WVDRMTG-----KQALMDRSRPKVEELRADMAQV
GTYVGLDIQEFRRIVAQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0N1BHI9|A0A0N1BHI9_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium sp. AAP93 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNDASIRKLIARAKRRGIITWDELNEALPND-MS-DQIEDITSALNEMGVNIVESDEDAVDPEDKSSDEEVED--
PVDERPD-L---------V--TKRKETVERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFHAIIQWSEALNAGEMQLREILD
LDAMLSKEPQ-PENLS-EDG-----------------EDDELTER-RAPAEEEEEKPEALEKFAQITDLFRTFEKVQAERLHALGAGNDFPAAKEQQYQQ
LREDLTAQVESVQFHATKIEYLVDNLYAFNRRLTTLGGQMLRLAERHKVPRKDFLDHYVGRELDE-WLQTLAS-----RAAFAANEAEPVERIRAEIADI
AAATGMSLGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|F1Z8Y4|F1Z8Y4_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium nitrogenifigens DSM 19370 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNDASIKKLIARAKRRGIITYDELNEALPQDQMS-EQIEDIMAAISEMGVNIVESDEDAVDPEERDVEETEDT--
GMDDRP--V---------V--EKRKETIERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFHAIIQWSEALNAGEMQLREILD
LDAMLSKEPQ-PENLS-EDG-----------------EDDELRER-RTPAEEDEEKPQALEKFAEITASFRAFERVQAERLDAIGLGIDFPADKEALYHK
LREELTAHVESVQFHATKIEYLVDNLYTFNRRLTTLGGQMLRLAERHKVSRKDFLDGYLGRELDE-WLQSMSG-----KGAFAANEADAVERIRSEISDI
ASATGMSLSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQSNLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|X7EDN3|X7EDN3_9RHOB RNA polymerase sigma factor RpoD OS=Roseivivax halodurans JCM 10272 GN=rpoD PE=3 SV=1
-------------------EEVSLDMSQAAVKKMIAEAKERGYITYDQLNSVLPPDQVS-DQIEDVMSMLSEMGIQVTEEEEDGDDDDQNKGS-------
TSSNKDVAV---------S--SGGSEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLAEEILLRDVID
LETTFGNQVEEDGELA-QAVV----------KEK---YDADGNPIRREEGEDEDEKPRVLETLDRIAQDYEELAAMQDNRISATLEDGSFSEGDEARYQK
LRGEIVELVNGLHLHNNRIEALIDQLYGINKRIMAIDSSMVKLADQARINRREFVDAYRGYELDP-WMERMGQ-----KQGFIERSADKVSELRGDMAQI
GQYVGLDISEFRRIVQQVQKGEKEARAAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDAAIQDNLKETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|F2I0L3|F2I0L3_PELSM RNA polymerase sigma factor RpoD OS=Pelagibacter sp. (strain IMCC9063) GN=rpoD PE=3 SV=1
----------------------MEKLISKSFERLMEKGLSRGFITYEELQKSLGKRNAN-ESLEKSVLHIFDQAICFVKKKSDFKVKKL-----------
-ESET----------------SKQPKNQDRSDDPIRMYLREMGGVELLSREGEIAIAKRIESGKYVMVSSLSESPVTAKKIFEWEERLINNEMLVRDIID
LDTNFLD-DDKLKKSI-KEKK----------------E------ETNTDIVDDDDKPKILKTFENISKNYRKLIAYQEESLQCILSSQKFSDSKKKNYEK
IKKEIMEEMLGLQFNQVTQEDLVALNYNENKKAINLDGDLMRAALKYGISRDDFIKFYVGNELNP-FESFLSG-----DSKFFKNEQKLFKISREKLTDL
SKNIGISISDFKILVNKIKKGERESRIAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMMSEYGREPTPEELSKKLAMPLEKVRKVLKIAKEPISLETPVGDEDDSSLGDFIEDTNALIPVDAAIQTGLKNSTTKV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRQLKSFLD-
>tr|A0A0Q9YQ01|A0A0Q9YQ01_9COXI RNA polymerase sigma factor RpoD OS=Coxiellaceae bacterium HT99 GN=rpoD PE=4 SV=1
-------------------YVDQEQQAATQLQDLIAAGKEKGYLTYAEVSDMLPYHIVD-EQVEDIISMINDMGIDVYEDAPDEEALTLT--DE-IAD--
-ARDAVESL---------A--FSPDAEFGRTTDPVRMYMREMGTVELLTRQGEIEIAKRIEVGTRQVLSALAAYPPNVAHVLKEYDRALAEQIRLGEIIS
G---FIEIDSDGNDIV-PVAE----------APANG-DEE---GEESEASDSDEL--LAAMHFGRLRDAYDKVVKVEANLGL------DHPE-----TQQ
AYADLATVFGVFKFVPRLFEELVGFMRNMLEDVRSHERAIMGLCQKGKMPRQNFVTSFPGFEVDT-WIERQLD-----SVENLRKIKDDVIEHQKQLRAV
EIRANRSIVAIKELHRNMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVARQMLQEMGREPTPEELGKRMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTVISSPADSATTAGLREATRRI
LSTLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRQPSRADDLRSFLV-
>tr|A0A0Q9YEF3|A0A0Q9YEF3_9COXI RNA polymerase sigma factor RpoD OS=Coxiellaceae bacterium CC99 GN=rpoD PE=4 SV=1
-------------------YVDHDEAQQSQLQDLIAAGKEKGYLTYAEVSDLLPYHVVD-EQVEDIINMMTDMGISVYEVAPDEDELSLG--ND-FSN--
--HDNGDGI---------S--FSPDSEFGRTTDPVRMYMREMGTVELLTRQGEIEIAKRIEVGIKQVLSTLATYPPNVKYVLDEYHRIRSSEGRLGDFIT
G---FVEEHLAEGDVI-TLDT----------SSSDD-------DDEERSEDELEL--IANAYFQRLNDIYQQTVAAEETYGL------DSPQ-----TAQ
CYQDLGQVLAVFKFVPKVFEELVSRMRDLFNLVRAQEKAIVNICHKGKMQRQTFVTSFPGFEVDF-WADSVFK-----TAEKMQAIKDQIKAHQEKLLAI
EKNSGRKIPAIKEIHRSMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVARQMLQEMGREPTPEELGKRMGMSEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTVISSPVDSATSSGLREATKRI
LSSLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRQPSRADDLKSFLL-
>tr|C0F9L6|C0F9L6_9RICK RNA polymerase sigma factor RpoD OS=Wolbachia endosymbiont of Muscidifurax uniraptor GN=rpoD PE=3 SV=1
-------------------TINDAEDKKKIIKDLVTKSIKGGFITFDDINDKLSDENFSD-FIDDAISLLQDSGINVLESIEDEEDIPSNS---------
--DDD-DT----------S--PNVTATLVQNDDPVRIYLQDMSSVKLLSRADEIEIAKKIESEKHNMLRAIIETSVTLKVIKVWRDDLSNGALLLREIID
LDAIYNSDFNVVPKEE-SEESS------DDESKKSDDDSKKSDDEKDGDISSVNLLPKVIVALDEIITLTNEALILRKNSKN-----FSN------ELEN
LYNQIWA-------VARI-----------TQELYKINRSITAEARKYDIDRESFYKVYDDVLLKHLKKISLLK-INQSSNKFLRFIDDNSEHIASTLNGI
KQHIQEDNQEFKELIKRIQKHEREVSEAKQEMIKANLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRAIPEQS
KVVRIPVHMVEIISKINRALRKMTHEMGREPTLEELSVELTMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSRPEDAAILADLRGITTNV
LATLTPKEERILRMRFGLGDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF--
>tr|A0A0P6P0X3|A0A0P6P0X3_9RICK RNA polymerase sigma factor RpoD OS=Wolbachia endosymbiont of Armadillidium vulgare str. wVulC GN=wVul_1165 PE=4 SV=1
-------------------TINDTEDRKKIIRALVTKGIRGGFITFDDINDKLSDENFSD-FIDDTISLLQDSGINILESSEDEEEALSNS---------
--DDN-ET----------S--LNTNATLVQNDDPVRIYLQDMSSVKLLSRADEIEIAKKIESGKHNMLCAIIETSAAFNMIKMWRDDLSGGTFLLREIIN
LDAIYNSDFNVVPKEK-SEAEV------DDD--------------KGNDISSVNLLPKVIMALDEIITLTNEALILKKNSKS-----FSS------ELEN
LYNQIWA-------IARI-----------TQKLYEINRLIVAEARKYDIDRESFYNVYGDVLLKHLREISLLK-INQSSNKFLRFINDNYEHIASALSSI
KHHVQGDNQEFKKLIKRIQKHEREVSEAKQEMIKANLRLVVSIAKKYSKRGLALLDLIQEGNCGLIKAVDKFDYKRGYKFSTYATWWVKQSITRAIPEQS
KVVRIPVHMVEIISKINKALRKMTHRMSREPTLEELSIELEMPIERIRKVMKIAKDPVSLEAPTGKDDNSTFGDCIEDKRVSKPEDAAILADLRGITTNV
LATLTPKEERILRMRFGLGDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPNRARKFRGFF--
>tr|B6Y703|B6Y703_9RICK RNA polymerase sigma factor RpoD OS=Wolbachia endosymbiont of Culex quinquefasciatus JHB GN=rpoD PE=3 SV=1
-------------------TINGTEDRKKIIKDLVTKSIRGGFITFDDINDKLSDENFSD-FIDDTIALLQDSGINILESSEDEEEAPSNN---------
--DDD-ET----------S--LNTTTTLVQNDDPVRIYLQDMSSVKLLSRADEIKIAKKIESEKHNMLRAIIETSVAFKIIKTWRDDLSGGTFLLREIIN
LDAIYNSDFNMVDKEE-SEAEV------NDE---------KGNDEKGNDISSANLLPKVITALDEIIALTNEALVLKKNSKD-----FSN------ELEN
LYNQIWA-------ITRI-----------TQKLYEINRLITTEARKYDIDRESFYNVYDDVLLEHFSEISFLK-INQSLNKFLRFINDSYEYIASALSNI
KSYVQGDRQEFKKVIKRIQKHEQEVSQAKQEMIKANLRLVVSIAKKYSKRGLDLLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVKQSITRAIPEQS
KVVRIPVHMVEIISKINKALRKMTHEMGREPTLEELSIELAMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSKPEDAAILADLRGITTNV
LATLTPKEERILRMRFGLGDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLKHPSRAKKLRGFF--
>tr|I7IA95|I7IA95_9RICK RNA polymerase sigma factor RpoD OS=Wolbachia endosymbiont of Onchocerca ochengi GN=rpoD PE=3 SV=1
-------------------AINNEEDKKKIIRDLVTKSIRGGFITFDDINEKLSDENFSD-FIDDTVSLLQDSGINILESSEDEEDAPSNN---------
--DDD-DT----------L--SNAATTLIQNDDPVRVYLQDMSSVKLLSRTDEITIAKKIESEKHNMLRAIIETSATLKMIKAWRDDLSSGSLSLREIID
LDAIYNSDFNAMPKED-VKENE------DYK------DNKKNNDEQESDISSTNLLPKIMVALDEIITLANKALTLKKNSSS------EL------TYKD
LYNQIWA-------TAKI-----------TQKLYNINRSIMSEAKKYEIDRESFYKVYDNVLLKYSKNIDLLK-INLSFNKFAKFINDNFEYITNTLNNI
KQYVQEDNQEFKELIKKIQKHEREISEAKQEMIKANLRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRAIPEQS
KVVKIPVHMVEIISKINRTLRKLTHEMEREPTLEELSIELGMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSKPEDAAILADLRGITTNV
LATLTPKEERILRMRFGLGDGKEHTLEEVGRIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF--
>tr|A0A060PZL0|A0A060PZL0_9RICK RNA polymerase sigma factor RpoD OS=Wolbachia endosymbiont of Cimex lectularius GN=rpoD PE=3 SV=1
-------------------TINNAEGKKKIIRDLVTKSIRGGFITLDDINDKLSDENFSD-FIDDTISILQDSGINVLESSEDEEDTSANN---------
--DDD-DT----------L--SSSATTLVQNDDPVRVYLQDMSSVKLLSRADEIEIAKKIESEKYNMLRAIIETSVTLKMIKAWRDDLSSGALLLREIID
LDAIYNSDFNTIPKED-GEESE------DDE------GNKKGDDEQESDISSANLLPKVIVALDEIITLANEALTLKKNSPS------ES------GYED
LYNQIWA-------VTQI-----------TQKLYNINKSIMSEARKYDIDRESFYKVYNEVLLKCLKGTSFLK-TNESFIKCTRFIEGNSECIARSVNNI
KQYIQEDNQEFKELIKRIQKHEREVSEAKQEMIKANLRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFNYKRGYKFSTYGTWWVRQSITRAIPEQS
KVVRIPVHMVEIISKINRTLRKLTHEMEREPTLEELSTELGMPLERIRKVMKIARDPVSLEAPTGKDDSSTFGDCIEDKRVSKPEDAAILADLRGITTNV
LATLTPKEERILRMRFGLGDGKEHTLEEVGRIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF--
>tr|Q5GSP3|Q5GSP3_WOLTR RNA polymerase sigma factor RpoD OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rpoD PE=3 SV=1
-------------------TINNSEDKKKIIRDLVTKSIKGGFITFDDINDKLSDENLSD-FIDDTISLLQDSGINILESSEDEEEAPSNS---------
--DDD-DA----------L--SNTTTTLVQNDDPVRVYLQDMSSVKLLSRTDEIEIAKKIESEKHNMLRAIIETSVTLKMIKAWRDDLSSGSLLLREIID
LDAIYNSDFNAIPKEE-SEESE------DDE------DSKKGNDEKENDINSANLLPKVIVALDEIITLADEALTLRKDPSG------GL------RYQN
LYDQIWA-------VAKI-----------TQKLYNINRSIMSEAKKYNIDRESFLKVYADVLLRYLEEISSLK-SNQFCNKFVKFIDDNFEHIADTLNNI
KQHIQEDNQEFKELIKRTQKHEREVSEAKQGMIKANLRLVVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFDYKRGYKFSTYGTWWVRQSITRAIPEQS
KVVRIPVHMVEIISKINRALRKLTHEMGREPTLEELSMELGMPLERIRKVMKIARDPVSLDAPTGKDDSSTFGDCIEDKRVSKPEDAAILTDLRCITTNL
LATLTPKEERIIRMRFGLGDCKEHTLEEIGCIFKVTRERIRQVESKALRKLKHPCRARKLRGFF--
>tr|V4RLN4|V4RLN4_9RHIZ RNA polymerase sigma factor RpoD OS=Lutibaculum baratangense AMV1 GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDAAVKRMIKTAKKRGYVTYEELNEVLPSEEVT-EQIEDTLSMLSDMGINVIENEEAEEAQEE---------EE
-QRGTV-QK---------S--ETKAEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELAEGKILLRDIID
LEATYAGPDAKAPDAT-AAQP--------------------ESDDE-SSDGDDDYKPQVVETFDNIAENYKKLRKLQDQLVEGRLKNETLSPSQERRYKK
LQEDVIADVKSLSLNQNRIDSLVEQLYDINKRLMGFEGRLLRLAESYGVDREDFLKQYQGHELDP-WIRRVAT-----CRDFIASDKETVKDIRGTIQSL
ATDTGLEVTEFRRIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A7HVJ8|A7HVJ8_PARL1 RNA polymerase sigma factor RpoD OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpoD PE=3 SV=1
-------------------DGPLLDMSDAAVKKMIKAAKARGFVTYDELNKVLPSEEFS-EQIEDTLSMLSEMGINVVENDEAEDNAEGADGEA----DE
--TGKAVAT---------T--TTTSSSLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEGKILLRDIID
LDATFAGPDAKKVDHS-QA-A-----------------------IEPEVDEDGEDKPKVLETFDTIAADYKKLRKLQDQKVELALQGEALSSAQEKKYQK
LTSDLIEEVKSLSLNNNRIESLVEQLYAINKRLMGLEGRLLRLAESHGIPRDEFLKQYFGNELDP-WIRRVSR-----LVNFTKDERDQVKDLRQEIQTL
ASETGLDIQEYRRIVSGVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0A1PZZ1|A0A0A1PZZ1_9BACT RNA polymerase sigma factor SigA OS=bacterium YEK0313 GN=rpoD PE=3 SV=1
-------------------DSPLLDLSDAGVRAMIKRAKKRGYVTIDEINSVMPAASFT-DQIEDMNAMLSEMGINVVDNEDNAEEAEADG-------DD
-GASRAVVK---------S--ERASEPLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIYLRDIID
LEATYAGPDAKNAPVV-NEGE----------------L-----PPG-VDMDEDDMKPKVLEIFDMIADEYKKLRRLQDQNVENRLNDTKLSPSQERRAKK
LSEDLVLHVKSLSLNQARIDALVEQLYDINKRLVGYEGRLLRLAESYGVDRLSFLKEYQGSELDP-WIRRVAS-----LKDFVASEKDTVKEIRAEIQAL
ATETALEIGEFRKIVQMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0P6VZ90|A0A0P6VZ90_9RHIZ RNA polymerase subunit sigma OS=Prosthecomicrobium hirschii GN=ABB55_07210 PE=4 SV=1
-------------------DGPLLDLSDAAVKRMIKAAKKRGFVTYDELNDVLPSEEVT-EQIEDILAMLNEMGINVIESDEVEDAEAAEK-----GAAE
-TSTAP-TL---------T--KTAREPADRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKILLRDIID
LEATYAGPDGKAPLAG-GPPM--------------------PELPE-GDDMDDDMKPKVVETFDRIADQYKKLRRLQDQHVEGALKNEALSPSQERRYKK
LKDELILDVKSLSLNQARIDSLVEQLYDINKRLMGQEGRLLRLAESYGVGREDFLKNYQGSELDP-WVRRVAT-----LRDLVKSDSDAVQDLRLEIQTL
ATETGLEITEFRRIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0K6HMH0|A0A0K6HMH0_9RHOB RNA polymerase sigma factor RpoD OS=Pannonibacter indicus GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDAAVKRMIKAAKKRGYVTYDELNEVMPSEHVS-EQIEDTMAMLSDMGINVIDSDEVEEAQ-----------EE
-SPTAL-AK---------A--GSGREPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIID
LEATYAGPDARGGPVA-GEGE----------------E-DGAPGGL-PEEEEDEFKPKVLETFDSIADSYKKLRRLQDQLVENKLSNKTLSPSQERRYKK
IQEELVADVKSLSLNQNRIDALVEQLYDINKRLMGYEGRLLRLADSHGVDRADFLKQYQGAELDP-WLRKVAN-----LKNFVAKEKDMIRELRQEIQTL
ATETGLEITEFRKIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0M4M628|A0A0M4M628_9RHIZ RNA polymerase sigma factor RpoD OS=Candidatus Bartonella ancashi GN=rpoD PE=3 SV=1
-------------------DSPPLDFSDDAIKKMVKLAQRNGYITMDELNAVLPSDSVT-EQIEDILTMFSEMGVSVVDDEDDIESEHCE--------AE
--AGREVAT---------I---SKREVADRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALVIWREELKEQRILLREIID
LEITYAGPEAKQAPVI-ERER----------SSSAPH-----GDVGA--EDDEDDCPQVMETLDFIAETYVKLRKLQDQHVENSLNDGALSSAQKKKSVQ
LKADLVQAVKSLSLNQNRIESLVEQLYSINKRLVHNEGKLKRIASNYGIGHDSFLKEYQGRELDS-WIDYISA-----LKEFALREAEMIHDLRSEIQNL
AQETAISIGEFRRIVMQVQKGEREATIAKKEMVEANLRLVISIAKKYTSRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQILHEIGREPTPEELSSKLSMPLEKVQKVLKIAKEPISLETPVGDEDDSHLGDFIEDRNVLLPIDAAIQANLRDTTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|E6YUF9|E6YUF9_9RHIZ RNA polymerase sigma factor RpoD OS=Bartonella sp. 1-1C GN=rpoD PE=3 SV=1
-------------------DGPLLDFSDDAIKKMMKLAKKNGYVLMDELNAALSSEEFT-EQIEDILAMFSEMGISVIDDEDEIEAEQYE--------VE
--TNYAVAT---------T---SKREVADRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWREELQEQRILLREIID
LEMTYSGPEAKQAPII-DESE----------SSSNMR-----EEEIG-DDDEEDDCPQVVDTLDFIAETYVKLRELQDQQVESSLKAEPISSEQRKQYTE
LKDALIQAVKSLSLNQNRIEALVEQLYDINKRLIQSEGKLKRLASNYGIGHEDFLREYQGRELDA-WVNYIAT-----LKEFSTCEAKVIQSLRNEIQNL
AQETAISISEFRRIVTQVQKGEREANIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQILHEIGREPTPEELSSKLSMPLEKVRKVLKIAKEPISLETPVGDEDASHLGDFIEDRNALLPIDAAIQANLRDTTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0A8K1Z5|A0A0A8K1Z5_9RHIZ RNA polymerase sigma factor RpoD OS=Methyloceanibacter caenitepidi GN=rpoD PE=3 SV=1
-------------------DGPVLDMSDAAVKKLIKTAKQRGFVTYDELNEVLPSEEVS-EQIEDTMSMLSDMGINVIDSEEAEEGDHA---------GE
-Q-SAVAKA---------E--TTTREPAERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKILLRDIID
LEATYQGPDAKQVPSQ-PLPG----------------E-SEEEGAE-GEDDDDDMKPQVLETFDLVASNYKKLRKLQDQQVEKALKNEDLSTSQHRRYKQ
LKDEIVAEVKSLQLNANRIETLVETLYLINKKLMGYEGRLLRLAEGYGVKREDFLNEYQGNELDP-WLRRVGR-----LADFIHDERGLVKELRGEIHQL
ATETGLQIAEFRRIVSIVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSYLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0A0D5L2|A0A0A0D5L2_9PROT RNA polymerase sigma factor RpoD OS=Inquilinus limosus MP06 GN=rpoD PE=3 SV=1
-------------------DGASMDITVQAVKKLIAKGKERGYVTIDELNAALPPDLTS-EQIEDVTSNLSEMGINVVENEESDDTAAAGGD--------
-DGEGRNAG------------NLDDDDVGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRAMIEWHSALKDGKMLLRDIID
LDATYGA-SPEGEALA-MSEG----------------AEAEGEGEAA-GGSGEEDKPQVLETFEAIEQTYQKMHKLQEQRLTHIQKGEAISKQADAKYDK
LKEDMVRLMEGVHLNNVRIEQLVEQLYGQNRKLMGLEGQLMRLVVEGGVSRESFLQNYFGHELDP-WIERVRG-----LAKFAEKNGAAAQRVRGQISQI
SDEVGLPIQEYRRIVSTVQKGEKEAGRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLLMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0D2T5P2|A0A0D2T5P2_9PROT RNA polymerase sigma factor RpoD OS=Skermanella aerolata KACC 11604 GN=rpoD PE=3 SV=1
-------------------DGPLMDGMAQAVKKMIARGKERGYVTYDEMNAALPPDQSS-EQIEDTMAMLSEMGINVVESEEQDDNQNAAAE--------
-DGETRVSG------------NLDDDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREQMIGAICESPLTIRAIIEWHDSLNEGKMLLRDIID
LDATYGG-GPEGEVAE--GIP----------------EPPLGA--DA-DGEGDGEKPQVLETFEKIAATYERLHRIQESRLTAIQRGEEIGK-TDKKYDK
IRAEMIELMNTVRLNNARIEQLVEQLYGLNRRLIGMEGRLLRMAVDSKVKREDFLHHYYGHELDP-WIDRIKG-----LPRFLERHTGDIVRLREQISSV
SDEAGLPIGEFRRIVSTVQKGEKEASRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLLMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|D3NTG7|D3NTG7_AZOS1 RNA polymerase sigma factor RpoD OS=Azospirillum sp. (strain B510) GN=rpoD PE=3 SV=1
-------------------DGPLMDGMGLAVKKMIARGKERGYVTYDELNAALPQDSSS-EQIEDTMAMLSEMGINIVESEEQDSENSGEGA--------
-DGEGRSSG------------NLDDDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGAICESPLTIRAILEWHDSLMEGKMLLRDIID
LDATYGG-GPDGEEMP-EGLA----------------RPPRAE-GEG-GEEGEEGKPQVIETFENIKATYDKLHKLHESRMAAMQRGEDLGKQTDRKYDK
LKTEMVELMNTVRLNNQRIEQLVEQLYGLNRKLTGFEGRLLRMATECRVKREDFLNQYFGHELDP-WLERIRG-----LGKFAEKYDGDIRKTREAISNV
AEEARLPINEFRRIVSTVQKGEKEASRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0K8ME72|A0A0K8ME72_9RICK RNA polymerase sigma factor RpoD OS=Caedibacter varicaedens GN=rpoD PE=3 SV=1
-------------------MESRKGDLKLAIKKLITRGKEKGYVTYDQLNDLLPQQEMS-EQIEDAMAVLSEMGINIVNGDEVEEETDNTVAEA----T-
-EPTE--SP------------SEEVSDAGRTDDPVRMYLREMGTVELLSREGETAIAKRIEKGREEMIEAILESPLTIRAIISWRDALRENQLNLRDIID
LDEVNTD-EDTAQIGE-EQEK----------------EEENSETTEEEEDANGEDMPQVLEMFDKIADTYDQFHTLQIERLKLAQEGKQPSAKNNHTYKN
LKMTLVELMSEIHLNPIRIDQLVEQLYHLNRKLTRLEGQILRYAIDSGIKREEFLQNYYGHELDP-WFVYIAK-----QTKFLSSHEAEVREIRNQISEI
TVESGLNITEFRRIVANVQRGDRHTRIAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLIRTSRQMLHEIGREPTPEELAEKLGMPLDKVRKVMKIAKEPISLETPIGDEEDGSLGDFIEDKNAVLPMDAAVNSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A077C1P6|A0A077C1P6_9RICK RNA polymerase sigma factor RpoD OS=Candidatus Caedibacter acanthamoebae GN=rpoD PE=3 SV=1
-------------------VELKKVDLKATLKKLIIKGKEKGYITYDQLNNALPQDEFS-EQIEDAMAVIAELGINVIEADEVDEEEAESSESS----S-
-DLEE--EG------------STELAEGGRTDDPVRMYLREMGRVELLSREGEIEIAKRIEDGRLMMIDAICESPLTIRAIISWRDALVENQISLREIID
IEDTSEE-ENPEEEEL--E------------------E------NDKNEESSENEKPQILEKFDKIAEIYESLYALQVERLKLAQEKKNQSSKNEKTFKE
LKKTLVELVSEIRFNPLRIDQLVDQLYTLNRKLMGLEGKILRYATESGIQREKFLTVYFGRELDP-WLSSIK------EDKFITKYGQEVQHIRDSVAEI
SVESGLNIAEFRRIVADVQKGDRQARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLMMPVDKVRKVMKIAKEPISLETPIGDEEDGSLGDFIEDKNAILPMDAAVNANLRETTTRV
LSTLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|J0ZL71|J0ZL71_9RHIZ RNA polymerase sigma factor RpoD OS=Bartonella tamiae Th239 GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDSAVKKMIKDAKKRCYVTMDELNAVLPSGQVS-EQIEDIMAMLSDMGINVVEDDEEGEADN-D--------VE
--SGRSVAT---------T---TKREAGDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWREELNEERILLREIID
LETTYAGPEAKQAPVV-ERVE----------PRRPSR----VGGETI-DDDDEDDRPQVMETLDFIADVYVKLRKLQDQHVESSLDEGALSSGQKKKYKQ
LKDDLVKAVKSLSLNQNRIEALVEQLYDINKRLVQNEGKLKRLADSYGVRHEEFLKEYQGHELDA-WVNYIAT-----LKEFSTREAKAIHQLRSEIQML
AQETAISIGEFRRIVNQVQKGEREATIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLSMQLEKVRKVLKIAKEPISLETPVGDEEDSHLGEFIEDKNALLPIDAAIQANLRDTTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|C6AEL9|C6AEL9_BARGA RNA polymerase sigma factor RpoD OS=Bartonella grahamii (strain as4aup) GN=rpoD PE=3 SV=1
-------------------DGPLLDFSDDAIKKMIKLAKKNGYVTMDELNAVLPSDEVT-EQIEDILAMFSEMGVNVVDDEDEVESENYE--------VE
--SSHAIAT---------T--TNKREVTDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELKEQRILLREIID
LETTYAGPEAKQAPVI-ERSE----------MSSGIR-----GERNI-DEEEDDDCPQVMETLDFIAQTYVKLRKLQDQHVESSLKEGALTSSQKKKYIQ
LKGELIQAVKSLSLNQNRIEALVEQLYDINKRLIHNEGKLKRIANSYGIGHEDFLKEYQGRELDA-WMNYIAA-----LREFSMREAKEIQKLRSEIQNL
AQETAISIGEFRRIVMQVQKGERESTIAKKEMVESNLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQILHEIGREPTPEELSSKLSMPLEKVRKVLKIAKEPISLETPVGDEDDSHLGDFIEDRNALLPIDAAIQANLRDTTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A3T1N7|A3T1N7_9RHOB RNA polymerase sigma factor RpoD OS=Sulfitobacter sp. NAS-14.1 GN=rpoD PE=3 SV=1
-------------------AGHSLDMSQAAVKKMIGEAREKGYITYDQLNTVLPPDQVS-EQIEDVMSMLSEMGINVIEDEEAE--EEDAKGG-------
TESNRDVAL---------S--SGTSEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LEATFGTQMGDEEET---T-P----------KPA---VDADGNPISND-DEDDDEKPQVLEALDIIADDYVKLSQIQDSRISATLEDGTFSKTDEEEYQR
VRSEIVALVNDLHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRKEFVDAYRGYELDP-WMERMAE-----KQMFIERSSDKVDELRADMAQV
GQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|S6DCI2|S6DCI2_ACEPA RNA polymerase sigma factor RpoD OS=Acetobacter pasteurianus 386B GN=rpoD PE=3 SV=1
-------------------DTTLLDTRSSAVKKLIAKGRERGCITFDELNAVLPQDKMS-EQIEDIMAVLSEMGIQVVENEDNDNEEAEPKKAA----EE
-AEAESPTG------------NVNAESVGRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTFRAIISWHEMIRNNEMLLRDIVD
LEAMQSG-GNPLE-EG-GDGT----------------E-------EPEEGDIESEKPEILAHFDEIEPLYAELRKLQVQRIEALTSGEDVDGNFEESYVA
LREKLVGKVEQVHLHNNRIEDLVAQLKQMFQKLNMLEGRMLRLAESCRVSREDFLLKYRGRELDP-WMDMVSG-----LKNFVAKHANTVVGLRDQVAQL
AQETGLPIGEFRRVYATVARGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAIIPLDAAIQTNLREATTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A084U9D5|A0A084U9D5_9RHIZ RNA polymerase sigma factor RpoD OS=Nitratireductor basaltis GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSGQVS-EQIEDTMAMLSDMGINVVEDEEAGEEADR---------ED
--TGTAVQ----------T--TQKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEGKILLREIID
LEATYAGPEAKQAPVV-QREE------------SRRA----VGGEGQP-EDDEEDKPAVMETLDFIADTYKKLRKLQDQHVESSLDGDSLSDSQKKRYKQ
LKDELIKSVKSLSLNNQRIETLVEQLYDINKRLVQNEGRLLRLAESYGVKREDFLKHYQGSELDP-WAENVAN-----LKEFSAKEAGTIEGLRSEIQNL
AQETAISIGEFRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAVLPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|V7G3K6|V7G3K6_9RHIZ RNA polymerase sigma factor RpoD OS=Mesorhizobium sp. LNJC394B00 GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDDAVKKMIKAAKKRGYVTLDELNAVLPSEETD-DRIEDINAMLSDMGINVVEDDDQSEEPEAAD-------ED
--TGTAVAA---------T--TTKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNESKILLREIID
LEATYAGPEAKQAPVV-ERIE----------RR-GRD----VGADTRGDDEEDEDRPQVMETLDVIADTYKKLRKLQDQQVENRLATGTLSPSQDRRLKE
LKDQLIKAVKSLSLNTARIEALVEQLYDINKRLVQNEGKLLRLAESYGVRREEFLKEYQGSELDP-WTRSIGN-----LKEFTKNEKDAIKDLRSEIQNL
ATETAISILEFRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAILPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0Q7ZYL7|A0A0Q7ZYL7_9SPHN RNA polymerase subunit sigma OS=Sphingopyxis sp. Root154 GN=ASD73_03455 PE=4 SV=1
-------------------DGPLIDLNEADVKKLIARGKKRGYLTYDELNAALPQDEMS-EQIEDIMSAISDMGINIVESDEDVQEEADAEPDDEVDV--
-TGSVSNPA---------I--EKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPLTFNAIIDWSTALNNGDMQLREIVD
LEAMLSKDPV-PENLE-EE--------------------EDGEGS-SGTFEEDEEKPDALEKFANITKSFKAFSKLQEARLEALSTAGEFPSASEKKYHK
LREELTAQVESVQFHNTKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVPRKSFLDNYVGRELEE-WIESVSG-----LAAFAENEAGAVDRIRIEISEI
AQAAGMSLTEFRRVVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRCSRQFLHESGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAVQSNLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0C9MPE9|A0A0C9MPE9_SPHPI RNA polymerase sigma factor RpoD OS=Sphingomonas paucimobilis NBRC 13935 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASIKKLIARAKKRGYITYDQLNEALPQDQMS-DQLEDIMAALNEMGVNIVENEEQGEDGEGEEEADDAAD--
GDSDSGPQP---------E--AKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSTALNEGTMQLREILD
LDAMLSKDAG-PENLG-EDE-----------------DEDGEGGE-RRAE-DEEEKPQALEKFANITSIYKKFSKIQQQRLESMALGGELSAADERKYHK
LREELTAEVESVQFHNAKIEFLVDQLYAFNRRLTALGGQMLRLAERHKVNRKDFLDRYLGHELDE-WLDTVRG-----LGNFASNEAATVDRIRSEIAEI
SQQTGMALTEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0Q5QZ05|A0A0Q5QZ05_9SPHN RNA polymerase subunit sigma OS=Sphingomonas sp. Leaf357 GN=ASG11_10625 PE=4 SV=1
-------------------DAPLIDLNDASIKKVIARAKKRGYITYEQLNEALPQGEMS-DQIEDISSALSEMGINIVENDEAGEEGDEK-PADDDEV--
ASDDGSQHI---------D--VKKKEVVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSTALNEGTMQLREIMD
LDAMLSKDPA-PESLT-DDE-----------------EEEDSMQE-RRPSDDEEEKPIALERFASITALYKKFSKMQVQRLDAMGAGGELSNADERKYQK
LREELTAEVESVQFHNAKIEYLVDQLYAYNRRLTALGGQMLRLAERHKVPRKDFLDRYIGHELDE-WIPNLGK-----LAAFVAAETDSVDRIRMEISEI
SQQTGMALPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0Q7R4K3|A0A0Q7R4K3_9SPHN RNA polymerase subunit sigma OS=Sphingomonas sp. Root50 GN=ASD39_08895 PE=4 SV=1
-------------------DAPLIDLNEGSLKKLIARAKRKGYITYEQLNEALPQDQMT-DQLEDVMSALNEMGVNIVENEDAGEDEQPEDDNV--DE--
DGDTGPALA---------A--TAKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIEWSNALNEGTMQLREILD
LDAMLSKGPT-AEQVE-NE--------------------EDSMTE-RRPQEEEDEKPLALERFAAITDLYKTFSDVQLARVAALGVGDDFPAAEEERYQG
LREQLTAEVESVQFHGAKIEYLVDQLYSFNRRLTTLGGQMLRLAERHKVPRRDFLEAYINREMED-WLERVAK-----IANFAAVEGDAVDRIRNEIGEI
AQATGMALSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQILHEIGREPTPEELAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQSNLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|F6IPC9|F6IPC9_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium sp. PP1Y GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASIKKLIARAKRRGVITYDELNEALPQDQMS-EQIEDIMAAISEMGVNIVESDEDGQSDDDNDNDN---D--
ESAPKMVA----------E--TKKKETVERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMILGLCESPITFHAIIQWSEALNNGEMQLREILD
LDAMLSKEPA-PESLN-EDG-----------------EEGEDGEG-RSQRDEDEEKPEALEKFARITELFQAFEKLQSERLDALALGIDFPTAKEDHYQQ
LREELTAQVESVQFHATKIEYLVDNLYAFNRRLTTLGGQMLRLAERHKVKRADFLNTYVGRELDD-WLPEMSR-----KAAFAENEADSVERIRSEISDI
AAATGMALPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A031K6Q9|A0A031K6Q9_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium resinovorum GN=rpoD_1 PE=3 SV=1
-------------------DAPLIDLNEGSIKKLIARAKRRGVITYDELNEALPQD-MS-DQIEDITSALNEMGVNIVDNDEDAESQENDDRDS---E--
EVSPRVNVD---------P--AKKKETVERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMILGLCESPITFHAIIQWSEALNNGEMQLREILD
LDAMLSKEPA-PEALS-EDG-----------------LDEDGNPI-P-QAEEEEEKPEALEKFLLITELFQTFERLQRDRLEALALGIDFPAAKEDQYQQ
LREDLTAQVESVKFHATKIEYLVDNLYAFNRRLTTLGGQMLRLAERHKVKRTDFLESYVGRELDD-WITDVAK-----KAAFAENEADPVERIRLEVSDI
AAATGMALPEFRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPTRSRKMRSFLD-
>tr|W9C2W1|W9C2W1_9SPHN RNA polymerase sigma factor RpoD OS=Blastomonas sp. CACIA14H2 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASVKKLLARAKKRGYITYDELNEALPQDQMS-EQIEDVMSAISEMGVNIVENDEEGAEEQPADDIDA-----
DGADSLNIA---------P--EKKKETMDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFHAIIEWSTALNDGEMQLREILD
LDAMLSKEPA-PESLS-EDG-----------------DEDELTER-RTPEEDDEEKPAALEKFAQITALFRKFEKIQGERLNALSIGDDFPAAKEKQYQK
LREDLTAEVESVQFHANKIEYLVDQLYSFNRRLTALGGQMLRLAERHKVPRKDFLDRYVGHEMDE-WLESMAG-----IANFVANEASAVDRIRAEISDI
AAATGMSLGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|M4S064|M4S064_9SPHN RNA polymerase sigma factor RpoD OS=Sphingomonas sp. MM-1 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASLKKLIARAKKRGYITYDQLNEALPQDQMS-EQIEDVMSALSEMGVNIVENEESGEDDQQEDSDD------
EGDGAPVLT---------Q--VAKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSTALNEGTMQLREILD
LDAMLSKGPT-AEQVE-SAE-----------------DDEDSMTE-RRPTEDDDDKPMALEKFATITELYKKFHKMQVARLEAMGAGGELPAAEEKKYQS
LREDLTAEVESVQFHGAKIEYLVDQLYSFNRRLMALGGQMLRLAERHKVQRKSFLDAYVGHETEE-WLDRVAG-----LAAFAAAEAAPVERIRAEIAEI
GQATGMSLPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQILHEIGREPTPEELAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0Q4IPI6|A0A0Q4IPI6_9SPHN RNA polymerase subunit sigma OS=Sphingomonas sp. Leaf226 GN=ASE77_02465 PE=4 SV=1
-------------------DAPLIDMNDASIKKVIARAKKRGYITYDQLNEALPQGEMS-DQIEDISAALSEMGINIVDNDEAGEEGEAEPAKDDDDE--
DAEADTGPA---------I--EKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSTALNEGTMQLREIMD
LDAMLSKDPA-PEAMA-EDG-----------------ADEDEDGE-RRASDDEEEKPIALERFANITALYKKFSKIQQSRVDAMGIGGDFSAADERKYQK
LREELTAEVESVQFHNAKIEYLVDQLYAYNRRLTALGGQMLRLAERHKVPRKDFLDRYIGHEIDE-WLATVNK-----VTAFVANESEAVERIRAEIADI
TQQTGMALTEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0Q5PJR1|A0A0Q5PJR1_9SPHN RNA polymerase subunit sigma OS=Sphingomonas sp. Leaf343 GN=ASG07_13335 PE=4 SV=1
-------------------DAPLIDLNDANIKKLIARAKKRGYITYDQLNEALPQDQMS-DQLEDVMSALNEMGVNIVENEEAGEDGETEERADDGDE--
EGETPDAAL---------P--EKKKETIDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSTALNEGTMQLREILD
LDAMLSKGPS-AEQVE-GAE-----------------DDEDDLTE-RRPSDDEEEKPIALERFANITALYKKFSKLQQSRLDSMSAGGDMSAADERKYQK
LREELTAEVESVQFHNAKIEYLVDQLYAFNRRLTALGGQMLRLAERHKVPRKDFLDRYVGHELDD-WLQSLGK-----MSAFVANESESVDRIRNEIGEI
AQATGMALTEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0E9MMK2|A0A0E9MMK2_9SPHN RNA polymerase sigma factor RpoD OS=Sphingomonas changbaiensis NBRC 104936 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASIKKLIARAKKRGVITYDELNEALPQDQMS-EQIEDIMSALNDMGVNIVENDEAGEDGEAEKEPEED----
DGSDGFAPL---------P--EKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIGWSNALNEGTMQLREILD
LDAMLSKDPA-PESLT-DED-----------------EDEESMTE-RRPVDDEEEKPAALEKFANITALFKKFGKLQAARLDAMGGGAAFSPADEKKYQK
LREDLTAEVESVQFHNAKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVPRKDFLDRYVGHELDE-WLDGVKS-----VAAFAGAEADAVERIRAEIAEI
AQATGMSLPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0D6YI81|A0A0D6YI81_MASLA RNA polymerase sigma factor SigA OS=Mastigocladus laminosus UU774 GN=sigA PE=3 SV=1
-------------------DAPLIDLNEASIKKLIARAKKRGVITYDELNDVV--GGMS-DQIEDITAALSEMGVNIVENEEQDEDGEAEPAADEAPE--
-EGGDGMFV---------V--EKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIWGLCESPITFNAIIQWSDALNAGEMQLREILD
LEAMLSKGPT-PEQVE-SA------------------EDEDGLIE-RRPVEEEDEKPAALERFARITGLYKKFAKIQVSRMVAMSAGEAFPKADESKYQK
LREELTAEVESMQFHNAKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVPRKAFLDAYMGHELDE-WAERVCG-----TAAFCEAEADTIDRIRVEISEI
ALATGMSLAEFRRIVNQVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQILHEIGREPTPEELAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|W0A454|W0A454_9SPHN RNA polymerase sigma factor RpoD OS=Sphingomonas sanxanigenens DSM 19645 = NX02 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASLKKLIARAKKRGYITYDQLNEALPQDQMS-DQLEDVMSALNEMGVNIVENEDAGEDAEPEDQAD-D----
SNDGPSANV---------A--EKKRESVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIDWSNALNEGTMQLREILD
LDAMLSKDPA-PESLT-EDG-----------------DDDESMTE-RRPSDDEEEKPAALEKFATITSLYKKFTKLQAARIEVLGVGNDFGAAEEKKYQK
LREDLTAEVESVQFHGAKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVPRKDFLDRYLDHELDE-WTAAVAT-----IGNFVAIEGAAVDRIRAEIGEI
AQATGMALAEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0G9MXZ5|A0A0G9MXZ5_9SPHN RNA polymerase sigma factor RpoD OS=Erythrobacter sp. KA37 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNESSIKKMIAKAKRKGYITYDELNEALPSGEMS-DQIEDIQSALSDMGVQIVESAEDAEDEEDEGPEEIAPT--
E-AKQHVPE---------K--KKSVAGEGRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIIGLCESPITFHAIIMWSEALNSEEMQLREILD
LDAMLSKEPP-VDKMS-EDGE----------------EDEDGEGS-SSRDDDDEEKPEALERFAKITSLFKTFEKLQNERVEVLASGEAFPAAKEAKYEA
LREELTAEVESVQFHATKIEYLVDNLYAFNRRLTALGGQMLRLAERHKVKRIDFLESYVGNELDD-WMKAKAK-----KQAFAENEADAIERIRVEIADI
ASQTGMSLDEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0F7KLS5|A0A0F7KLS5_9SPHN RNA polymerase sigma factor RpoD OS=Altererythrobacter atlanticus GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASIKKLIAKAKRRGYVTYDELNEALPSDQMS-DQIEDIQTALSEMGVQIVENDEDAQEDEDGGVEEIASQ--
A-EQKNVPE---------K--KK-KETTERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFHAIIMWSEALNNEEMQLREILD
LDAMLSKEPP-VDKME-EG------------------DDEDGEGS-GRREEDDEDKPDAIERFARITDLFKKFEKIQAERVEILGRGEDFPASREAKYEK
LREDLTAEVESVQFHATKIEYLVDNLYAFNRRLTALGGQMLRLAERHKVKRKDFLDAYIGNELDD-WLKSVAK-----KAAFAEKEGEAVERIRAEIADI
ASQTGMSLDEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0M2LW64|A0A0M2LW64_9SPHN RNA polymerase sigma factor RpoD OS=Sphingomonas sp. Ag1 GN=rpoD PE=3 SV=1
-------------------DAPLIDLNDADVKKLIARAKKRGYITYDELNAALPQDQMS-DQLEDVMSALNEMGVNIVENEEAGEDGDEQEQPEDE----
VDQGTAPAV---------E---KKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIMGLCESPITFNAIIDWSTQLNEGTMQLREIID
LDAMLSKGPS-AEQVE-GAE-----------------DDDDDMTE-RRASDEEEEKPMALEKFANITSIYKKFSKMQQGRLDAMGGGTELTAADERKYQK
LREELTAEVESVQFHNAKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVSRKDFLDRYMGHELDD-FLATVNG-----LTAFATNEAAAVERIRSEIAEI
SQQTGMALGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|Q2W9H4|Q2W9H4_MAGSA RNA polymerase sigma factor RpoD OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpoD PE=3 SV=1
-------------------DGPLLDTLGVAVKKMVAKGKERGYVTYDELNAAMPPEEVS-EQIEDTMAMLSELGINVVESEEGEDNTPEAAE--------
-TEGYSGAG------------NVDEEDLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTLRAVVDWHDALVEGKMLLRDIID
LDATYGA-DPEPEELA-EVEA----------PKAEGEAEGEPEVEG--GEAEEGELPIVLETFEVIAATHHKLEKVQDQRLAALNKGEAVTPAMEKKYDK
LKLELVRLMDGIHLNNARIEQLVEQLNGLNRRLMMQEGRLLRLAESCRVKRQDFLDAYYGSELDP-WIEQVTQ-----RKDFGARHGKDAADIRATIADI
SAEAGLPISEYRRIVQTVQRGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A4U313|A4U313_9PROT RNA polymerase sigma factor RpoD OS=Magnetospirillum gryphiswaldense GN=rpoD PE=3 SV=1
-------------------DGPLLDALGVAVKKMVTRGRERGYVTYDELNAALPPDEVS-EQIEDTMAMLSEMGINVVESEETDEAAAV--E--------
-AEPSSGAG------------NVDEEDLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRAIIEWHDALQNGRMLLRDIID
LDATYGS-GPGGELSE-EEME--------------GENAPEGEVEGE-G---EGEMPQVLETFEAIAANFLRMEKLQKDRMAALSKGDTVSAATEKKYDK
LKAEMVRLMEDVHLNNARIEQLVDHMNGLNKRLMGFEGRLLRLAESCKVKRQDFLDSYFGSELDP-WLETVAV-----KKDFSEKHRRDVGDIRTQIGVV
SGEAGLPITEFRRIIQTVQRGEREASKAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|H8FW03|H8FW03_PHAMO RNA polymerase sigma factor RpoD OS=Phaeospirillum molischianum DSM 120 GN=rpoD PE=3 SV=1
-------------------DGPLLDTLGVAVKKMVARGKERGYVTYDELNAAMPPEEVS-EQIEDTMAMLSELGINVVESEDGEEAQPEG-E--------
-TEGYSGAG------------NVDEEDLGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGICESPLTLRAVVEWHDALVEGKMLLRDIID
LDATYGA-GPGGELSE-EELE----------PGAPAADPDLPEV--E-VEAEDGELPQVLETFQAIAATHQKMEKVQEQRLAALSKGEAATPAIEKKYDK
LKTELIKLMQGIHLNNARIEHLVEQLNGINRRLMTQEGRLLRLAESCRIKRPDFLDAYYGSELSP-WVEHVAM-----RKEFSARYATEIADIRTTISRI
SGESGLPINEYRRIVQTVQKGEREASKAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0G3XGM0|A0A0G3XGM0_9SPHN RNA polymerase sigma factor RpoD OS=Croceicoccus naphthovorans GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASIKKLIARAKKRGVITYDELNEALPSGEMS-DQIEDIQSALSDMGVQIVESDDDSESDDNDGDNDGPDE--
PSSAKENKA---------P--AKKKETVERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDMMIMGLCESPITFHAIIQWSEALNNEEMQLREILD
LDAMLSKEPA-PENLN-DE--------------------EDGEEG-SSREEDDEEKPDALERFARITKLFQSFEKLQDERVEAMGRGEDFPAAKEAKYEK
LREDLTAEVESVQFHAAKIEGLVDNLYSYNRRLTALGGQMLRLAERHKVKRADFLQEYVGRELDD-WLVDMAK-----KAAFAEKEADAVERIRAEIADI
ASSTGMALHEFRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0P6X1I3|A0A0P6X1I3_9SPHN RNA polymerase sigma factor RpoD OS=Erythrobacter sp. SG61-1L GN=SZ64_06025 PE=4 SV=1
-------------------DAPLIDLNEASIKKLIAKAKRRGYITYDELNEALPQDELS-EQIEDVMSAISEMGVNIVESDEDAEGQEEDNNVDEVN---
ADEGRNVPE---------A--PRKAGTGERTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFHAIIQWSEALNNGEMQLREILD
LDAMLSKEPP-VERME-EEG-----------------DGEDGEGR-SRREEEDEEKPEALERFARIADLFKKFEKIQAERVDALGRGEDFPAAKEKKYEQ
LREDLTAEVESVQFHATKIEYLVDNLYAFNRRLTALGGQMLRLAERHKVKRGDFLEAYVGNELDD-WLAAMAK-----KAAFAEKEAEGVERIRAEISDI
AAATGMSLNEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQSNLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|F6IED8|F6IED8_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium sp. PP1Y GN=rpoD PE=3 SV=1
-------------------DSPLLDLDKGSVQRFIARAKSKGVITVKELNAALPQDQMT-DQIEDIMAAISDMGVKIIENDDDDDEEGEQEDGVDAVD--
EGNSRRRPG---------E--TRKADTLARSDDPVRMYLQEMGAAEMLSREGEAAIAKRIEAGRDMMIMGLCESPLTFHAIIGWSEALNNGDMQLREILD
LDAMLSKEPQ-PENLG-EDG------------------DEDGN-P-IPGEEDEEDKPEALAKFALITELFRTFERLQSERLDALALGIDFPGAKEDQYQQ
LREDLTAQVESVQFHATKIETLVDNLYAFNRRLTTLGGQMLRLAERHKVKRADFLDAYTGRELDD-WLTEMAS-----TASFAESEAEPAERIRLEVSDI
AAATGMALPEFRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFQYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHDQGREPTPEEMAEKLSMPLEKVKRVLKIAKEPISLETPIGDEEDSSLGNFIQDENAVIPVDAAIQANLKEMITRT
LASLTPREERVLRMRFGIGMPTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRIMRAFLD-
>tr|A0A0N0MAT7|A0A0N0MAT7_9BRAD RNA polymerase sigma factor RpoD OS=Bosea vaviloviae GN=rpoD PE=3 SV=1
-------------------DGPLLDLTDQAVRRMIKLAKKRGYVTYDELNEVLPSEEFS-EQIEDVLGQLSEQGINVVDNEDPEASGEERAAARTGTNPE
-SRSALPVE---------V--KRNLEPTERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEAKILLRDIID
LEATYAGPDAKNPQVA-AGEG----------------G-EAEVPEG-EDLDDDDIKPRVLETFDSIADNYKKLRRLQDQDIANRLENTKLSPSQDRKYKK
LKDDIITAVKSLSLNNNRIEALVEQLYDINKRLIGHETRLLRLAESYGVGREDFLKQHVGGELDP-WVLRVSK-----LREFVGAELERIKSLREDIHTL
ASETGLEIQEFRKIVLMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0M9GMB5|A0A0M9GMB5_9RHOB RNA polymerase sigma factor RpoD OS=Ahrensia sp. LZD062 GN=rpoD PE=3 SV=1
-------------------DGPLLDLTADSVKKMIRAAKKRGFVTVDELNSVLPSDQTD-DKIEDVMSALSEMGINVVEEDEDSDNDGDGDAG-----TS
TASGSAVAT---------T--VKKKEPTDRTDDPVRMYLREMGQVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELMEENILLRDIID
LETTYAGPEAKATPKV-PTPE----------RRR---D-DITNVGGEGDDEDEEDRPQVMEIFDNIADVYSKLRKLQDQQVESALDEGDLSSSQKRRYKQ
LQDDLVTLVKSLSLNNQRIDALVEQLYSINRGFVQNEGRLLRLAETYGVSREAFLKHYQGSELDP-WVETISQ-----IKAFAEKEPVSIENLRAEIQEL
ATETGIAIPEFRRIVNQVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLAMPLEKVRKVLKIAKEPISLETPVGDEDDSHLGDFIEDKQAILPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|Q0G635|Q0G635_9RHIZ RNA polymerase sigma factor RpoD OS=Fulvimarina pelagi HTCC2506 GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDDAVKKMIKAAKKRGFVTMDKLNSMLSSDGVT-DQVEDLMAMLNDMGINVVEDDEEGEADNDNDND-----SN
--TGKTQIA---------T--TEKKSSGDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEGNILLRDIVD
LEATYAGPEAKAPAAV-AAPS-----------GR-TS--RPGEARPIGEDEDEDDLPQVMETFDLIADTYLRLRKLQDQQVENRLATGALSPSQEKSYRK
LKEDLIAAVKGLSLNQNRIDALVEQLYDINKRLVGNEGKLLRLGESHGVRRDEFLNEYQGSELDP-WTRRVAN-----LLDFVQKDKVKIQRLRGEIQNL
ATETGLEITEFRRIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQGNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|U2WDM5|U2WDM5_9PROT RNA polymerase sigma factor RpoD OS=alpha proteobacterium RS24 GN=rpoD PE=3 SV=1
-------------------DSPLID-SDVAVRKMIKSATQRGFITASERDKVLTLDKFT-EQIEDILSQLSELGINVIENDDEHDDEDEDSE------DS
-SQSTAVVK---------S--TKTGTGGDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNDGKVLLRDIID
LDATFAGPDAKKIDRS-AEGA------------------PTGEAEG-VDESDE--KPQVLETFDVIASIYQKLRRIQDRKVELKSGNKELTNAQLKKLEE
MTSEVIQHVKVLSLNNSRVEALVEQLYMINKRLLMLENQIWRMADKSGVDREEFLKHYQGNEYES-WTRRVSR-----LKNFITDNRVEVNAHRDEIQQL
AGETGLDIADFRRIVRKVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSDKLSMPLEKVRKVLKIAKEPISLETPIGDEDDSHLGDFIEDKNAILPIDAAIQNNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0B1Q9D4|A0A0B1Q9D4_9RHIZ RNA polymerase sigma factor RpoD OS=Aureimonas altamirensis GN=rpoD PE=3 SV=1
-------------------DSPLLDLSDDAVKKMIKAAKKRGFVTMEKLNSVLTADDVT-EQIEDTMAMLNDMGINVVEEDESEEAEERDT-------SS
--AGSAV-A---------T--TQKREAGDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEGNIMLREVVD
LEATYAGPEAKMPAAP-APTA------------PEP------EPGGGE-DEDDDLRPQVMATFDLVADNYKRLRKLQDQQVENRLAQGTLSPAQERSYRK
FKEDLIAQVKSLSLNQNRIDALVAQLYDINKRLVSSEGKLLRLAESHGVKREEFLKSYHGAELDP-WTRHIAN-----LTKFAQGEKENIRGLRQEIQNL
ATETGLEITEFRRIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAILPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0Q5GJ55|A0A0Q5GJ55_9RHIZ RNA polymerase subunit sigma OS=Aureimonas sp. Leaf324 GN=ASF65_08150 PE=4 SV=1
-------------------DSPLLDLSDDAVKKMIKAAKKRGFVSMDKLNSVLSAEDVT-EQIEDLMSMLSDMGINVVEDEEGDNEEEKES-------SG
--TTGTV-A---------T--TTKKETSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWREELNEGNIMLREVVD
LEATYAGPEAKMPSAP-VEGA------------NGE------LRPGEE-DDEDDLRPQVMETFDAIAENYKRLRKLQDQQVENRLAQGTLSSSQERSYRK
LKEDLVAAVKGLSLNQNRIDALVAQLYDINKRLVGNEGRLLRLAESHGVKRDEFLQTYQGSELDP-WTQSIAN-----LLKFVQNEKDGIRNLRQEIQNL
ATETGLEITEFRRIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAILPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0F9WVE4|A0A0F9WVE4_9ZZZZ Uncharacterized protein OS=marine sediment metagenome GN=LCGC14_0304280 PE=3 SV=1
-------------------DGPLLDLSDDAVKKMIKAGKKRGFVTMDKLNSMLSADDVT-EQIEDMMSMLSDMGINVVESDEDGEA-ED---N-----SE
--PGRTQVA---------T--TTKKEAGDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLSFQAIIIWRDELNDGNIMLREIVD
LEATYAGPEAKTPTPP-PPA------------AD-GT--PQPGARAPGEEEDDDLKPQVMEIFDQIADAYRRLRKLQDQQVENRLAQGTLSPSQERSYKK
LKEELITAVKSLSLNQNRIDALVAQLYDINKRLVGNEGRLLRLAESHGVKRDEFLREYQGSELDP-WTRHIAN-----LLKLVQSEKDQIKALRQEIQNL
ATETGLEITEFRRIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQGNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|X5MC25|X5MC25_9RHIZ RNA polymerase sigma factor RpoD OS=Candidatus Phaeomarinobacter ectocarpi GN=rpoD PE=3 SV=1
-------------------DGPLLDMSDAAVKKMIKAAKSRGFVTYDELNKVMPSEEVS-EQIEDTLSMLSEMGITVVENEETEDGDEAEDGDK----PA
PKKSSAVTT---------G--GRTGSTLERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIMWREELNEGKVLLRDIID
LDATFAGPDAKKTVPP-GSPG----------------E-NGNATVAPDDEEDEDERPQVMEIFDGIASDYKKLRRLQDQLVEARLNSDDLSTSQQKRLKK
LTADIVEQVKNLQLNNARIEALVEQLYAINKRLVSLEGGLMRLAESHGVPRAEFLKQYFENELDP-WARRVGR-----LKDFVGEERDSVKEIRTEIQGL
AQETGVEITEFRRIVNTVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0Q4KX14|A0A0Q4KX14_9SPHN RNA polymerase subunit sigma OS=Sphingomonas sp. Leaf33 GN=ASE86_08320 PE=4 SV=1
-------------------DAPLIDLNEGSLKKLVARAKKRGYITVDQLNEMLPQDQMS-EQIEDVMSALNDMGINVVENDEAGEDEPAQEEESTD----
GSDGSQTFE---------V--AKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIGWSTALNEGTMQLREILD
LDAMLSKGPS-AEQVE-GAE-----------------GDEDDMTE-RRPSDDEEEKPQALEKFANITAIYKKFGKIQEQRLDAMGGGGELSASDERKYHK
LREDLTAEVESVQFHQAKIEYLVDQLYSFNRRLTALGGQMLRLAERHKVPRKAFLDAYVDHELDE-FLSANAK-----TAAFAANESTAVDRIRTEIAEI
AQQTGMALGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0Q4HDP6|A0A0Q4HDP6_9SPHN RNA polymerase subunit sigma OS=Sphingomonas sp. Leaf23 GN=ASE67_00915 PE=4 SV=1
-------------------DAPLIDLNEGSIKKLVARAKKRGYITVDQLNEMLPQDQMT-EQIEDIMSALNDMGVNVVENEDAGEDGEGEERAKQEED--
QDDASAAFE---------P--VKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIFGLCESPITFNAIIGWSTALNEGTMQLREILD
LDAMLSKDPA-PESLS-DDE-----------------EDED--GE-RRPSDDDDEKPQALEKFANITAIFKKFSKMQSQRLDAMAAGDGLSAAEERKYQK
LREELTAEVESVQFHQAKIEYLVDQLYAYNRRLTALGGQMLRLAERHKVPRKAFLDSYVDHELDE-WLTSVAT-----IKAFAENEGAAVDRIRTEIAEI
AQQTGMALGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0G3X6T8|A0A0G3X6T8_9SPHN RNA polymerase sigma factor RpoD OS=Altererythrobacter marensis GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASIKKLITRAKKRGYVTVDELNEALPQDQMT-DQIEDVMSAISEMGVNIVENDEEAEAEADAESEVEEIA--
KPAKKTATA---------A--AKKTTTTDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIIGLCESPITFHAIIQWSEALNSEEMQLREILD
LDAMLSKEPP-ADKME-EG------------------SDEDGENS-RQDDDDDEEKPDAIERFARITDLFKKFERIQADRVDTLGRGEDFPASKEKKYEK
LREDLTAEVESVQFHATKIEFLVDNLYAFNRRLTALGGQMLRLAERHKIKRIDFLKAYIGNELDD-WLKERTK-----KAAFAEREGEAVERIRAEISDI
ASQTGMSLDEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0A0P7AIH1|A0A0P7AIH1_9SPHN RNA polymerase sigma factor RpoD OS=Citromicrobium sp. RCC1878 GN=AAJ74_08280 PE=4 SV=1
-------------------DAPLIDLNEASIKKLISKAKKRGYVTYDELNEALPQGEMS-DQIEDIQAAISEMGVQIVESDDEVESEKDEV-EEIAPD--
T----KSAA---------A--APKKTVDARTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIIGLCESPITFHAIIQWSDALNEGEMQLREILD
LDAMLSKEPP-VDKME-EE------------------GDEDGDGE-SKRDDDDEEKPDALERFARITDLFKKFEKLQAERVDVLGRGDAFPAAKEKKYED
LREQLTAEVESVQFHATKIEFLVDNLYAFNRRLTALGGQMLRLAERHKIKRIDFLDAYLGNEMDD-WLTSRT------KAAFAEKEAESIERIRTEISDI
ASQTGMALEEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQSNLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|Q2NAR6|Q2NAR6_ERYLH RNA polymerase sigma factor RpoD OS=Erythrobacter litoralis (strain HTCC2594) GN=rpoD PE=3 SV=1
-------------------DAPLIDLNEASIKKMITKAKRKGYVTYDELNEALPSGEMS-DQIEDIQTSLSEMGVQIVESDEEAEAEQEQANEVEEIA--
KKDAKKPAA---------A--VKKTTTGDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIIGLCQSPITFHAIIQWSEALNAEEMQLREILD
LDAMLSKEPP-AEKLE-EGA-----------------DDEDGEEG-SSSDDDEDEKPDAIERFARITSLFKKFEKLQLERVDTIARGEVLPKAKENRYEK
LGEELTAEVESMQFHATKIEFLVDNLYAFNRRLTALGGQMLRLAERHKIKRADFLQAYIGNELDE-FLKDRVK-----KAAFADKEADAIDRIRTEIADI
ASQTGMALPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|A0L5T1|A0L5T1_MAGMM RNA polymerase sigma factor RpoD OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpoD PE=3 SV=1
-------------------SNMAEDTKREDMKKLIARGKERGFLTYDEVNDVLPNDMTS-EDMEDVVGLLDNMGIDLIDDEREEGARPKSR--PAAGIDE
DEDGLRSDG---------A--IEDID-LGKTDDPVRMYLREMGSVELLTREGEIAIAKRIEEGCNEVIATICDAPSTFNEVMMLAERLRAGEISLREVLD
ISTPQDEGSEDE---------E------DVDPPVKTEIAAQRE-----NEQFRELFDEITRENEVLVELRDPLNDALQNDPE-----GETCKRLLAEYQA
HKARIVEIVAGIKFSPKQRDRLVERIKSYVAAVRAQEQKIITIVTQCNVKKPEFIEQFTGNES-DTWIQN---FARSAPWKRLYEQSELICEAQLVIRSI
EEEAGQTVADLKKCNKKLMDGERRANQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEWRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMVQEMGREPTPEEIAERMSMSLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKSMLSPSEHAIMSNLRDTTGRV
LQTLTSREEHVLRMRFGIGLPTDHTLEEVGKQFNVTRERIRQIEAKALRKLRHPTRSRKLRSFLE-
>tr|A0A0M0D3I4|A0A0M0D3I4_9PROT RNA polymerase sigma factor RpoD OS=Mariprofundus ferrooxydans GN=rpoD PE=3 SV=1
-------------------KNSQEQVTIRELGSLMAKGKQAGFITYDDLNKHLPGGLV-ADRVEQLINVFTEMGVEVVDPERAPTGAYA-----------
KE-DSALRA---------D--TSQLGTVIRIDDPVRMYLREMGTVELLTREGEIEIARRIEEGRMQVHEAICLCPSTFREIMLLGERIIQIRPSFRDIID
VDEKVVNSAAIK---------E---------PKLD-----------------GEQGTPMQETVTKEEQLEEALFHFGEAKKLHDDKKLAKRPNDKALLLE
VLDAMLLELVSIPFSPRQLDQLVQRFKNAVEKVRRFERSIRDYALEARMPRKLFLETFPVDETNE-WIDE-L-KQDAAWVTAIEEVTGKIKENQRRLRRV
EQETEMGVVELKDVARKLTMGEAKMRQAKREMIEANLRLVISIAKKYTNRGLGFLDLIQEGNIGLMKAVEKFEWRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMMRVSRQIAQEIGREPTPEELAEHLELPVEKVLQILEVAKEPVSLETPIGDDEDSQLGDFVEDDNAENPLDSTIGAALAEATLEV
LENLTDREQKVLRMRFGIGMNTDHTLEEVGKQFGVTRERIRQIEAKALRKLRHPSRSQKLKTFAD-
>tr|A0A0F5MPI9|A0A0F5MPI9_9RICK RNA polymerase sigma factor RpoD OS=Candidatus Arcanobacter lacustris GN=rpoD PE=3 SV=1
-------------------NEEMSPKMASAIKKILAKGKGQGFVTYEEINNILPVETIS-DLIDGAMSTIAEAGINIVDQEDDLENDVEGE---------
SEDGFEE-----------S--SGGDEELGRTDDPVRMYLRDMGGVELLSREGEIEIAKRIEEGKENMIKALCENPLIMKQFITWYEDLINEKILLRDIID
LDASYGAEFEFDAEGG-IVVEE------E-------------------EDDGFGELPTVLDMLAKIVAVSEKIIATHGKKLASVIGDYKSKTPEEKQLAS
NCKEIAVIIKDLHLNEKSIDILVTKLYSISKKIIAMEGKLMRVAESRNIDRKSFLKHYSNSEMDL-WLDK-V-AIEKGWKEFVGQDREQIENIRGEIRDL
SGVVGMVVSDFKVQVHAVQKSERSASKAKKEMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIIRTSRQMANDLGYEPTPNEIADKLGMPLEKVKKVMKIAKEPVSLDNPVGDEEGSYLGDFIEDKNAVLPVDAAILSNLRETTTRI
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRGFLN-
>tr|A0A077FQX5|A0A077FQX5_9RICK RNA polymerase sigma factor RpoD OS=Rickettsiales bacterium Ac37b GN=sigA PE=3 SV=1
-------------------SSNAHPSLTTALKKILARGKGQGFITYDEINDMLPQEYLT-EQVDNAITALSEAGINVIENQDEDEEI-------------
NGEGLSEEV---------E--EEEEEELATTDDPVRMYLRDMGGIELLSREGEIEIAKRIEEGRETMLYALCESPLALKQFITWHEDLTNEKILLREILD
LDAMYGTDTEFSESEG-FEGVE------D-------------------EEGEEEGLPGVLETFSKISDVCTKLLEIRVEVLDYSLHKQSANSNWAKNIKK
HSKELVNLIKELHLNEKCVEALIDHLYGLNRRLISLETNLLRQISAYEIDRKSFLDNYIGNEMGL-WIEN-L-AANKNWNNLLSSEGEKIKKFHHEVISI
AKSVILPITDFKQLVQMIQKGERSANKAKKEMIEANLRLVISIAKKYANKGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHELGYEPTPNEIAERLAMPVEKVRKVMKIAKEPVSLENPVGDEEGSSLGTFIEDKNAILPVEAAIQSNLRGVTTKV
LLSLTPREERVLRMRFGISINTDHTLEEVGQQFFVTRERIRQIESKAIRKLKHPSRSKKLRGFLN-
>tr|T0HH89|T0HH89_9SPHN RNA polymerase sigma factor RpoD OS=Sphingobium lactosutens DS20 GN=rpoD PE=3 SV=1
-------------------DAPLLDLNEASVKKLIARAKKRGYITYDELNDALPQDQMS-EQIEDIMAALNEMGVNIVENEEASEDGDEQREREREDA--
SDDDGPKLV---------T--EKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILD
LDAMLSKDPA-PESLE-EG------------------EDEDGLTE-RRSEEEDEEKPMALEKFATITDIFRNFSQAQEKRMQAMANGDVLSQKAEDDYQA
LRESLTAEVESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLAERHKVSRKDFLDRYVNHELDD-WLDKVSG-----LTAFAAAEGRSVDRIRNEIAEI
AQATGMSLGEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|L0EWI7|L0EWI7_LIBCB RNA polymerase sigma factor RpoD OS=Liberibacter crescens (strain BT-1) GN=rpoD PE=3 SV=1
-------------------ENPILDFSDDAVKKMIKLAKQRGYVTIDELNAVLPSDEVN-EQIEDTMVILSEMGISVIEDEDAEETSGED--------VS
--GNGSVLA---------I--QKRKDSSDRIDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGSTLLREVID
LEATYAGPEAKVAPQF-QNID----------LKNRAN----VGGEGIIDDEEEEERPQIMITLDQIADTYRYLCELQDEQSKD----KNSEVSFLQKHKE
LKNELIRAVKSLSLHQNRIDILVEQLYDISKRLMYNEGNLLRLAESYGIVREVFLKNYQGFELDK-WIDYIEK-----FKYFVNSERESIKRIRNEIQGL
ASETGISISEFRCIVSMVKKGEREANIAKKEMVEANLRLVICVAKKYSNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYAMWWIRQAVTRAIADHS
RTIRIPVHMIETINKIVRTSRQMLNEIGREPTPDELAEKLIMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAISPIDAAIQSNLRETTTLV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSKKLRSFLD-
>tr|G2IIG7|G2IIG7_9SPHN RNA polymerase sigma factor RpoD OS=Sphingobium sp. SYK-6 GN=rpoD PE=3 SV=1
-------------------DAPLLDLNEASIKKLIARAKKRGYITYDELNNALPQDQMS-EQIEDVMSALNDMGVNIVENDEQGDDSEDGAEPEAD----
EDEDGSGNV---------G--EKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSNALNNGEMQLREILD
LDAMLSKDPA-PESLS-EDG-----------------DDEESMVE-RRAEEEDEEKPAALEKFANITQLYSAFGKIQQARLIALGNGVEFPAKDEASYHK
LREDLTAEVESVQFHQQKIEYLVDQLYAFNRRLTTLGGQMLRLAERHKVPRKDFLDQYVGHELDE-WLEKVGK-----ISAFASAEAGAVERIRSEVAEI
AQASGTSLPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|W6WI79|W6WI79_9RHIZ RNA polymerase sigma factor RpoD OS=Rhizobium sp. CF080 GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVT-EQIEDTMAMLSDMGINVVEDEEAEEATTGGEDDS----SE
--SGGTALA---------T--AKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGTTLLREIID
LETTYSGPEAKAAPQF-QSPE----------ARFSAA----VGGEGMN-EEEDDDRPQVMETLDTIADTYKKLRKLQDQQVEQRLATGTLSSAQERRYKE
LKDELITAVKSLSLNQNRVDSLVEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYQGAELDP-WMKSIAN-----LKEFARAENTTIRDIRQEIQNL
ATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|G4RGS2|G4RGS2_PELHB RNA polymerase sigma factor RpoD OS=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDAAVKKLIKTAKKRGYVTYEEINAVLPSEEVT-EQIEDIMAMFSDMGINVVDEDEVEEAEADNSS------DE
-TGTTAVAN---------T--SNAKSGSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDQLAEGEILLRDIID
LEATYAGPDAKMADAT-AGND----------AKAEGG------SEGGQDDDDDEYKPQVVETFDRIAETYGRMRKVQDQHVEDQLAAKSLDASEVKELDA
WRTQVISDVKSLSLNASRIESLVEQLYDINKRLVRNEGRLLRLAESYKIKRDDFLNAYYGSELDP-WADKVFQ-----RADFVARERATIDELRAEIQTL
ATETGLDIAEYRRIVSKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIPDTNAIQPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0Q4P6N7|A0A0Q4P6N7_9RHIZ RNA polymerase subunit sigma OS=Devosia sp. Leaf64 GN=ASE94_12940 PE=4 SV=1
-------------------DSPLIDQNDAAVKKLIKVAKKRGYVTYEELNAVLPADETS-EQIEDFMSMFSEMGINVVDEDEVEETEVEKDE------ET
--GGTALAN---------T--SNTKSGSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIEGLCESPLTFQAIIIWRDQLAEGEILLRDIID
LEATYAGPDAKQAAPE-IPVP----------AASSDSE-PQAPQDP-VDDDEF--KPQVVETFDRIAEAYGQMRVMQDRHAEDR--TATVSDAESKKLEV
LRGEVIADVKSLSLNNSRIESLVEQLYDINKRLVRLEGRLLRLAESYGVKREVFLKNYYGRELDP-WETTFDG-----FAEFARREVDTVRDIRYEIATL
ATETGLDIAEYRRIVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIQDVNAIQPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0F5LU96|A0A0F5LU96_9RHIZ RNA polymerase sigma factor RpoD OS=Devosia limi DSM 17137 GN=rpoD PE=3 SV=1
-------------------DSPLLDLSDAAVKKLIKVAKKRGYVTYEELNAVMPSEEVS-EQIEDIMSMFSDMGINVVDEDEVEETEVEKDE------ET
-STGSAVAT---------T--SNTKAGADRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIEGLCESPLTFQAIIIWRDQLAQGEILLRDIID
LEATYAGPDAKQAAPD-MSAI----------RRAAGG--PEEPQAPQDDDDDDEFKPQVVETFDRIAEAYGKMRVMQDKHAIDR--SASVSDSDVKKLEA
LRAEVIADVKSLSLNASRIESLVEQLYDINKRLVKLEGRLLRLAESYGVKREKFLESYYGQEVNP-WEASLES-----FGEFARREADTIREIRGEIATL
ATETGLNIAEYRRIVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIQDVNAIQPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|J2PWY3|J2PWY3_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium sp. AP12 GN=rpoD PE=3 SV=1
-------------------DEPLMGANKGSVAQFIARAKRRGVVTVSELNAALPQDQMT-DQIEDIMSAMSEMGINIVENDEDAEDAQDEADTQT-----
GEASPRRTT---------D--SRNADSLGRTDDPVRMYLREMGAVEMLSREGEAAISKRIEAGRDMMIQGLCESPLTFHAIIQWSEALNAGEMQLREILD
LDAMVSKEPA-PEALG-EDG------------------DEDGN-P-VTAVD-EEEKPEALEKFRLITELFRTFERLQSERLDALALSIDFPAAKEEQYQQ
LREELTAQMESVKFHAAKIEYLVDNLYAFNRRLTALGGQMLRLAERHKVKRADFLDSYVGRELDD-WLAQMAG-----TAAFAEAEADPAERIRLEVSDI
AAAAGMALPEFRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTNRRFLHDHGREPTPEEMAESLSMPLEKVKRVLKIAKEPISLESPVGDEDDSHLGDFIQDANAVIPVDAAIQSNLKEMITRT
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRAMRAFLD-
>tr|A0A0J7XFR8|A0A0J7XFR8_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium barchaimii LL02 GN=rpoD PE=3 SV=1
-------------------DAPLIDGNRGSVAQFIARAKRRGTITVSELNAALPQDQMT-DQIEDVMSAISEMGVKIVENDDEGDEGDSQIDSQN-----
SEISQRRVP---------D--SKKAESLGRTDDPVRMYLREMGAVEMLSRAGEAAIAKRIEAGRDMMIQGLCESPLTFHAIIQWSEALNAGEMQLREILD
LDAMLTKEPA-PESLN-EDG------------------DEDGN-P-IPVED-EEEKPEALEKFLLITELFRTFERLQSDRLDALALGIDFPVAKEEQYQQ
LREDLTAQVESVKFHAAKIEYLVDNLYAFNRRLTTLGGQMLRLVERHKVKRADFLENYVGRELDD-WLDEVAK-----KAAFAAAEADPAERIRLEVSDI
AAATGMALPEFRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYMNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTNRRFLHDHGREPTPEEMAERLSMPLEKVKRVLKIAKEPISLETPVGDEEDSHLGDFIQDSNAVIPVDAAIESNLKEMITRT
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRTMRTFLD-
>tr|A0A0D1CGL0|A0A0D1CGL0_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium sp. P6W GN=rpoD PE=3 SV=1
-------------------DPAILDAGEGSIAQFLARAKRRGIVTVSELNAALPQDQLT-DQIEDVMSAMSEMGINVVENDEAEDDADPAVD---REG--
DDASPRRVT---------E--SKSAESLGRTDDPVRMYLREMGTVELLSREGEAAIAKRIEAGRDMMIQGLCESPLTFDAIIQWSQALNAGEMQLREILD
LDAMVAKEPT-SENLT-EDG------------------DEEGN-P-ARE-AEDDEMPEALEMFAVITDLFRQFQKVQGERLEALALGIDFPADKEERYHE
LREELTAKVESVKFHAGRIEHLVDNLYVLNRRLTTLGGQMLRLAERHKVKRADFLETYVGRELDD-WLSEMAT-----RAAFAAAEGDAAERIRSDVADI
AAAAGVPLQEFRRIVNMVQKAEREARIAKKEMVEANLRLVIAIAKKYMNRGLQFLDIIQEGNIGLMKAVDKFQYRRGFKFSTYATWWIRQSITRSIADQA
RTIRIPVHMIETINKLVRTNRQYLHEHGREPTPEEMAERLSMPLEKVKRVLKIAKEPISLESPVGDEDDSHLGDFIQDENAVIPVDAAIESNLKEMITRT
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRIMRTFLD-
>tr|A0A031JCE0|A0A031JCE0_9SPHN RNA polymerase sigma factor RpoD OS=Novosphingobium resinovorum GN=rpoD_3 PE=3 SV=1
-------------------EEPIIEASRGSVAKFIAYAKRRGTITVDELNLALPQDQMT-DQIEDVMAAMSEMGIRVVENEDDPDADDAPASAASSDDDD
GAVFESREP---------R--PKKAENLGSTDDPVRMYLREMGAAEMLTREGEAAIAKRIEAGRDIMIQGLCESPLTFHAIIEWSEALNAGHMQLREILD
LDAMLAKEPQ-VETLG-ED-------------------DEDGN-P-IAREEADAEMPEALEKFALIAGLFHSFERLQADRTEAAGLGIIFPEAREEQYLQ
LRAELTAEVESVKFHAAKIEQLIDNLYVSNRRLTTLGGQMLRLVERYKVKRADFLEAYVGRELDD-WVAEMAG-----RAAFAAAEAGPAERIRNEVAEI
AATIGMALPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYVNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRANRRFLHEHGREPTPEEMAEQLSMPLEKVKRVLKIAKEPVSLESPVGDEEDSSLGDFIRDENAVIPVDAAIEANLKEMITRS
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRIMRAFLD-
>tr|A7IEP4|A7IEP4_XANP2 RNA polymerase sigma factor RpoD OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDAAVRKMIKNAKRRGYVTYEQLNEVMPSEEVT-EQIEDTLAMLNDMGINVIEAEEAEAEEGAE-----ETEEA
-PAPRAVAR---------S--ETKSEPAERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELTEGRVLLRDIID
LEATYAGPEGKNPPAA-LGEE----------------L-L----GD-AEGEDDDMKPKVLETFDRIASSYTKLRRLQDQNVESKLKNETLSPAQERKAKK
LKEDLVGDVKSLSLNQARIDALVEQLYEINKRLVGLEGRLLRLADSYGVTRDDFLKNYMGAELDP-WLLRVSK-----LKGFVGHEKDTIHEIRGDIHAL
ATETGLEIAEFRKIVQMVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|D7A2I1|D7A2I1_STAND RNA polymerase sigma factor RpoD OS=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 911
-------------------DSPLLDLSDAGVRKMIKLAKKRGYVTYDELNEVLPSDQNT-DQIEDIYAMLNEMGINVVEAEEAEAEAEAEE----SGPEE
-SAPRAVVR---------S--ETKSEPGERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVEGKVLLRDIID
LEATYAGPEAKNSPIV-EGGS----------------E-EREPTLG-ESDDDDDMKPKVLETFDNIADAYKKLRRLQDQNVESKLRNESLSPSQDRKYKS
LKDALIADVKSLSLNQARIDNLVEQLYDINKRLVSLEGRLMRLAESFGVAREDFLKQYQGSELDP-WIIRVKN-----LKGFVGQELDAIRDLRSEIHAL
ATETGLEIQEFRKIVQMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0H5B760|A0A0H5B760_BLAVI RNA polymerase sigma factor RpoD OS=Blastochloris viridis GN=rpoD PE=3 SV=1
-------------------DGPLLDLSDAAVRKMIKLAKKRGYVTYEELNDVMPSEEVT-EQIEDTLAMLNEMGINVIEAEEAEAEEQAE-----AEQPE
-TSARTPAR---------S--ETKSEPSERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELMEGKVLLRDIID
LEATYAGPEGKNPPQQ-DGEV----------------A-ETEPPVP-DFDDEDDLKPAVLKTFDTIADNYTKLRRLQEENVKNKLKNLTLSPAQERKYKK
LKDDIVTEVKSLSLNQARIDALVEQLYDINKRLVSFEGRLMRLAESYGVDRADFLRNYQGSELDP-WLLRVSK-----LKNFITHEKDGIKNIRGDIHNL
AADTGLEIQEFRKIVQMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|U6B589|U6B589_9RHIZ RNA polymerase sigma factor RpoD OS=Candidatus Liberibacter americanus str. Sao Paulo GN=rpoD PE=3 SV=1
-------------------YSPVIDFSDDSCKKMIKAAKQRGYVTMEELNSVLNLDDAD-EHIEDTIAVFSNMGISVIEGDSLEDLEEASEDSL------
--GNSTALA---------E--RRKDLVDRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNEGTTLLREIID
LEGACAVPGSKMSIFR-RSEE---------KNKRKIS-D--IEDIVADEYDDEDDRPQVMNTLNEIADAYQQLRMFQDGGNN------KHDEKISAGCRA
LKEKLVKLVRSLSLNQTRINLLVEQLYDISKRIMHNEGKLLRLAESYGIKRDVFLERYKDNETEL-WLDNAKS-----FKDFISCEADSIFQIRDELKGI
TSETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKATEKFDWWMGFKFSTYAMWWVKQSVTRSIADQS
RTIRIPVHMIETINKIVRTSRQMLNEIGREPTPDELAKKLIMPLEKVRKVLKIAKEPISLETPIGDEDASHLGDFIEDKNAVSPVDSAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGRQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD-
>tr|A0A0G3I5W4|A0A0G3I5W4_LIBAF RNA polymerase sigma factor RpoD OS=Candidatus Liberibacter africanus PTSAPSY GN=rpoD PE=3 SV=1
-------------------DALFFYCSDDSWKKMVKLAKQRGHVTIEELSTALPSLESN-DQIEEVISMFSNIGVNVVDGDDDLEYEEESEDSL------
-SGNTSVLV---------Q--KRKDSTDRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNEGTTLLREIID
LE-ACIGPGSKGSAFY-GRGE---------NSK--D-NA--NSFPENELDEDEDDRPKVMCTLNEIAESYRELRLLQDNATN-----GLRDDKSYAKYKV
LKDKLVELVGSLSLNQSRIDLLVEQLYDISKRITHHEGELLRLAQSHGVKRDVFLERCQGCELDS-WVDFAKD-----LKDFIACEMDSILRIGNEIKDI
SSATGISISEFRHIVSMVRKGACETSIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQECNIGLMKAVEKFDWSLGYKFSTYAIWWLKQSAGRAIADQS
RTIRIPVHMLETINKVVRTARRMSNTIKREPTPDEIAKKLAMPLERVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPVDSAIRANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD-
>tr|C6XHL9|C6XHL9_LIBAP RNA polymerase sigma factor RpoD OS=Liberibacter asiaticus (strain psy62) GN=rpoD PE=3 SV=1
-------------------DSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVS-EQMEDTVAMLSNMGINVVDGDDLED-EEGSEDSL------
-ASNSSVFL---------Q--KRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNDGTTLLREIID
LE-ACIGPESKGGFFH-GTEG---------DSK----SP--PENAENDLDEDEDDRPKVMCALDEIAEVYRELRSLQDNAVN-----GQKDEKSSVKCKV
LKEKLVKLVGSLSLNQSRIDLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDP-WVSYAKD-----FKNFVACEVDSILKIRNEIKSI
SVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQS
CTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD-
>tr|E4UE22|E4UE22_LIBSC RNA polymerase sigma factor RpoD OS=Liberibacter solanacearum (strain CLso-ZC1) GN=rpoD PE=3 SV=1
-------------------DTLVFDFSDDSWKKMLKAAKQRGYVTVEELNTVFPSEEAS-EQIEETMAMLSNMGINVVDSDDLEDLEEGSEDSL------
-NGNTAVLS---------Q--KRKDLADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNDGTTLLREIID
LE-ACIGPGSKATFFQ-GSEA---------GSK--V-SA--AENGDGELDEDEDDRPQVMSALNEIAESYQKLRLLQESTRR------QNDEKYLVKYRE
LKGRLVELVGSLSLNQSRIDLLVEQLYDISKRIMKNEGELLRLAQSYGIKRDVFLDRYQGHELDP-WTSSAKG-----FKNFVDCEMDSILRIRDDIKGI
ASETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAVEKFDWCLGYKFSTYGMWWVKQAVTRSIADQS
RTIRIPVHMIETINKVVRTARRMSNTIKREPTPDEIAKKLAMPLERVQKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPVDSAIQANLRENTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD-
>tr|W6K676|W6K676_9PROT RNA polymerase sigma factor RpoD OS=Magnetospira sp. QH-2 GN=rpoD PE=3 SV=1
-------------------DSPLIDTLGANLKKLVARAKERGYVTIDELNQAMPPEQVS-EQIEDTMASLSEMGINVVENEEAEEASETTGTA-------
-ATTTSPAG------------NVDEDEMGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGLMESPLTIRAICAWHDQLQEESILLRDIID
LEATYGG-AGGPPAGE-EGEG--------VGPEVKTEAEEGQEGERRADDDEDLEKPEVIETFEKITKTYEKLHKVQLQRLEALQAGTDVKPSAEKRYAK
LRKELIELMDTVHLNNTRIEQLVEQLYALNKMLMGMEGRLLRWATSSKVKRDDFLQNYFGDELDP-WLERMSA-----KTRFAERYTDEIENTRSEIAVI
SQEAGLPISELRRVVGTVQKGEREANKAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIHSNLRETTTRV
LSSLTAREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|Q2RQB6|Q2RQB6_RHORT RNA polymerase sigma factor RpoD OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)
-------------------DSPLLDSMNAAVKKLVNRGKDRGYITYDELNNALPPDDVS-EQIEDTMAMLSDMGINVVEDEEEGEASAAPPAEA------
-GREVAATG------------NVSEDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRALLQWHDALVDGRMLLRDIID
LDATYGS-GAGPD----------------LAPGRDDDADGAGDEEAAPEDEGDGSMPRVLETFEHIATTYGKLKKAQDQRIAALQKGEEPGAALERKYDK
LKLELVGLMEDVHLNNARIEQLVEQLNALNKGLITQEGKLLRLAERAKIRRDEFLDHYFGREMDP-WREDVAA-----LRDFTTRFADEIKDIRGSIAEI
AERSLLPIPEFRRIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAINSNLRETCTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|V9TSP1|V9TSP1_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Endolissoclinum faulkneri L5 GN=rpoD PE=3 SV=1
-------------------DRLLLDSISQLIKNLIKKSKERGCLTYSELNSTLPHEDLS-EQIEDLISVLNEMGINFIENEYNPEKEEE-----------
-DKDNTLTG------------NVSEEDIGRTDDPMRIYLREMGSVELLSRDGEIAIAKRIEASLEMMIGGICESPLTIRALVQWRDQLKDGTILLRDVID
LEATYGV-EHATLTPY-SDEN----------------K-----RLDNKEYPDDSEIPQVLKKFDNIANTYSKLAKMQKRRIDKLTRGEELAKTPERKYEK
LKRDLIEAMESVRLNNSRIDSIVEQLYSLNRNMIQVDTQLWRMADSVNVSRKSFMEEHFGNELEP-WAKRVAK-----KRKFFKTYSDQIEKHRSNLAKI
SADAGLPISEFRRIVQTVQKGERDAGRAKKDMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLPEIGREPTPEELAEKLVMPLDKVRKVLKISKEPISLETPVGDEEDAHLGEFIEDKNVIQPLDAAIQTNLREITKRI
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFFE-
>tr|G5ZZB5|G5ZZB5_9PROT RNA polymerase sigma factor RpoD OS=SAR116 cluster alpha proteobacterium HIMB100 GN=rpoD PE=3 SV=1
-------------------DAPVLDTSNTAVKALIKKGKERGYVTHDELNAALPQGELT-EQIEDVMASLSDMGVNVVEAADDVETDSDEA---------
-TTEGRATG------------NLSDNDVGGSDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLAMRALLTWAEQVRDGVVPLRDIID
LDLTFVR-LNGSPIED-NSGL-------------LDEDTEEG--GETGNSDDDLDFDDVMGQISVIEKLFKKYAALQDKKVAAACKNKTLTAAQDDELAE
MKIQLVEEMQNICLHSSRLDSLGQQLSDLNRHMTTLDGKMLRLTGACGIARSAFMDKWSGCETQD-WPGEAAK-----TTKLKDEHAEEVSDIITKMQLI
ATDVGVTIPELRALVHTIQRGQREAARAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRHMLHEIGREPTPEELAEKLSMPLDKVRKVLKIAKEPISLETPIGDEEDSQLGDFIEDKNAVQPLDAAIHSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLE-
>tr|A0A0F2RKB1|A0A0F2RKB1_9PROT RNA polymerase sigma factor RpoD OS=Rhodospirillaceae bacterium BRH_c57 GN=rpoD PE=3 SV=1
-------------------DGPLLDSMNAAVKKLVARGKERGFITYDELNAALPSDDVS-EQIEDTMAMLNDLGINIVENEEEETAAVTK----------
-DDDESVAG------------NVSDEEAGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTISALLEWHDALLEGKMLLRDIID
LEATYGA-DMAAAEGI-AAEN----------PSDGDDEPKDGESE---GEEGDLEMPTVVEAFEKIATTYTKMRKVQDQRLNAIAAGGEVTPQIEKKYEK
LRQELIKMMDGVHLNNARIEYLVEHLNELNKRLLGLEGKLLRLAMTCKIKREDFLDSYYGAEQDP-WLDHVAH-----RKDFSAKHSDQAGKIREGIAAV
SDDARQPITEFRRIVQTVQKGEREATKAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAIQPLDAAINANLRETCTRV
LASLTAREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|K9H8N4|K9H8N4_9PROT RNA polymerase sigma factor RpoD OS=Caenispirillum salinarum AK4 GN=rpoD PE=3 SV=1
-------------------DGPLLDTINAAVKKLVAKGKERGFVTYDELNAALPSDDVS-EQIEDTMSMLSEMGVNVIEGEDDVETSSTSG---------
-DEEDSKSG------------NVSEEDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRALLEWHDALLEGKMLLRDIID
LETTYGS-GPGGEELD-EVEA----------PAKESQEAKEGAS--E-DDEDNEAMPKVVETFEQIAATYGKLKKLQDQRLAALGKGDTVSAAQEKKYEK
TRAELIDLMEGVHLNSNRIEGLVERLNDLNRRIMGLEGKLLRLAVSSKVKREEFLQSYFGYELDP-WLETVAQ-----RKDFAVKHEAEVTRIRGEIALV
AEEAGQPISEFRRIVQTVQKGEREATRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAIQGNLRETCTRI
LATLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|K2LWN9|K2LWN9_9PROT RNA polymerase sigma factor RpoD OS=Thalassospira profundimaris WP0211 GN=rpoD PE=3 SV=1
-------------------DGPLLDTYKSAIKKLIAKGKEKGHISVDELNAALPSEHFS-EQIEDVMSNLNEMGINVIDGDEADDNDDN-----------
-DSDADPRG------------NISEDDVGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGICESPLTIRAIVNWHDQLQAGELLLRDVID
LETTYGG-GPEAEIAA-AEGE---------SLTDEAEEDEEGEAGADGDDDDENETEQVLEKFELIAKTYEKLHKAQEQRLVAMNKGEAVPAATEKRYNK
LKNEMVDLMEDVHLNNFRIEELLDHLTGLNNRLLGLEGKLLRFADRCKIKRPDFIKQYQGHELDP-WMERVGG-----LKTFVERYSEEIASLREGIGGV
SAEVGLPVGEFRRVYGVVNKGEREAGRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|H6SR76|H6SR76_RHOPH RNA polymerase sigma factor RpoD OS=Pararhodospirillum photometricum DSM 122 GN=rpoD PE=3 SV=1
-------------------DGPLLDSMNAAVKKLVSRGKDRGYITYDELNGALPPDDVS-EQIEDTMAMLSDMGINLVEDDEEGEASSAV--TT------
-SREMSASG------------NISEDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRAVLQWHDALVEGRMLLRDIID
LDATYGA-GAVALDPA-AADA--------LAPAEGATVEPLGEG----EPGEEDGLPRVLETFEGIATTYGKMKKVQEQRLSALLKGEDPPATVERKYEK
LKSELVTMMEEIHLNNARIEQLVEQLNALNKQLMVQEGKLLRLAERARIKRQEFLDRYIGREMDP-WIDDVAR-----LREFTTRYASDVADIRATISEV
SEHSSLPIPEFRRIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAIQPLDAAINANLRETCTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|I3TVC8|I3TVC8_TISMK RNA polymerase sigma factor RpoD OS=Tistrella mobilis (strain KA081020-065) GN=rpoD PE=3 SV=1
-------------------DGPLVDSLEITVKKMVARAKERGYISYDELNKALPQDQLS-EQIEDVMAMLSEMGINVVENDEEGEELGENQS-G------
-EFGGSHAT------------SVEEEELGRTDDPVRMYLREMGSIELLSREGEILLAKRIEAGRNTMIGAICESPLTFRAIVRWRDALAAGEAMLRDIID
LEASYGG-DQPPMTDE-DAEA----------AARPEGET----VRAADEEDEEGDTPVILESFDKIVEAWAKLEKLQAKRLEAALKGEEQTTQARSRFEA
AKSDVIEMVRGLNFAQARIDLLVEELYLLNRSLMSLEGQLMRLAVGCRVKREDFLRLYSGQELAP-WFQVVGA-----QKTFLERHGEEAADIREGISRL
AREVGLPINEFKRIVSNVQRGEREASQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPVDAAIHSNLKETTTRV
LASLTAREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|V4PG22|V4PG22_9CAUL RNA polymerase sigma factor RpoD OS=Asticcacaulis sp. AC460 GN=rpoD PE=3 SV=1
-------------------DGPLLDLTDSAVKKFIKAAKARGYVTMDELNKVLPSEEFT-EQIEDTLAMLTEMGVNVIESEEEAG--------------E
---ESGSLV---------E--TAKTSAYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGSGRILLREIID
LEGTYGGGPSEGPPPG-ALGE--------K-SGDDDDD-EQEKKPEPEEEDDFDDRDGVMATLDAIAGEFETYRRTQEKMLSAKLEGLPLDPADRAAYDE
VTATITRHLKTLKLNNQRIEALVEQLYGINKRLMQLEGRLLRLADSYGISRTEFLGAYYSRELDP-WESKVR------DQKFVDNEGGAISRIRTDIITL
ATDMGVAVDDYRRIVQTVQKGEREARQAKTEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|R5Q1Z5|R5Q1Z5_9PROT RNA polymerase sigma factor RpoD OS=Acetobacter sp. CAG:977 GN=rpoD PE=3 SV=1
-------------------DDALLDSLGASVKKLISKGKDRGYITVDELNNALPPE----EQIEDVMAMISDMGINIVENEEESEEEAPSGS--------
--EDDDTGF------------KLDEVESSRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDLMIGGLCESALTIKALTGWHSALQSGKMLLRDIID
LDATYGS-DSNEDGIP-VSSL--------NGNGEDGDEEEDSSDDDGEEDSAEDDMPQVLQQFEQITAAHQKLKKVQDQRLAAIRAGKPVSAATEKKFEK
IRQELVSMMEEVQLNPARIEKLVDQLNEYNKRLMTLEGKMLRMAVSSRIKREEFLEAYKASEVDP-WVDKMT------GNAFKEKYAKEIAEIQTAISSM
AEEIGMPIFEYRRICSMVKKGEQESSRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDRNVVQPLDAAIQANLRATCTAV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|H9BX20|H9BX20_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium W5-15b GN=sigA PE=3 SV=1
-------------------DGPLMDSMSAAVKKMVQKAKERGYLTYDELNKALPPDQMS-EQIEDTMSMLSEMGITVVESEEPDDNNTEE----------
--EKGQVAG------------NLADEDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREKMIGGICESPLTIKALLFWRESLIEGRILLRDIID
LDATYGG-GPTDAEMA-EEEG--------NGPGAPGGAPS----DGKASEEDDEDLPIVLKMFDEIAATYKKLSRAQEKRLAAMQRGQKVTPQGERHYEK
VKARLIELMDDVHFNNARIEQLVEQLYGLNKRLVGLEGKLLRLAEKHGVKRQDFLDHYFGRELDP-WLSRVKR-----LAKFAEKRADEVKDIRKQIAEI
AADTGLPIAEFRRIVKTVQTGEKEAGKAKTEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPVPEELAERLAMSLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPLDAAIQANLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0H2MDM4|A0A0H2MDM4_9PROT RNA polymerase sigma factor RpoD OS=Kiloniella spongiae GN=rpoD PE=3 SV=1
-------------------DGPLMDITSATVKKMIAKAKEVGYVTYDELNKVLPSDEMS-EQIEDIMALLSEMGINVVENEEADEAVDEE----------
-KPDEVVVG------------NVKEEDAGRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDKMIGGICESPLTIRSLLHWREGLIQGDLLLRDIID
LDATYGG-GPNDDDIA-FEES-----------SQPGEAPAEGEAASAEDDDDDAELPQVLEMLESIAGHQQKLSKVQEKRLTSLLAGDKVPDAVEKKYSK
MKQEMIELMEGVHFNSNRLEQLMDQLYGLNKNLMSQEGKLLRLAEKSGVARQEFLDTYFGSELHP-WLEEIKS-----YDKFAERYSEDITKIRGSISKV
ADDVGLPIPEFRKTVKVVQTSEKEASRAKTEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPQPEELAERLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPLDSAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0C1MWJ1|A0A0C1MWJ1_9RICK RNA polymerase sigma factor RpoD OS=endosymbiont of Acanthamoeba sp. UWC36 GN=rpoD_2 PE=3 SV=1
-------------------PANKAANEDSSFEKLIKKGKETGSVTFDQLNSVISD--TD-EKIEDTISFFDDAGITLSE-KSSDDEELVFD---------
---SEEEPA---------E--EEEEQETLRSDDPVRMYLKEMGHVELLSREGEVEIAKKIEDGRYKMITYLCQTPVALRAFIDWYDALSNEAILLREIID
LDAMYSKEFGKDEFSE-AKLAE------DLD--------KKTE-----DDYDSEERPKMIDVFGKAAQLSGQILNIQQDKLAAALKPFSAA--LNKKYET
LNQELSTLMQDMRFNETQIDRILDKLYSINKKLIGIESQILRLAENNKINRNTFLTKYTGNELEP-LLDK-L-EGDKGFKDFIQKEREQINYLRGNVIEI
AKEVGLDISTFKQLVSEVQRGERVASKAKKEMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKILRTSRQIVHDMGREPTPEEIAMKLAMPVEKVRKVLKIAKEPMSLENPVGDDEGSMLGDFIEDKNAIQPLDAAILTNLREVTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGKQFRVTRERIRQIEAKALRKLRHPSRAKKLKGFSS-
>tr|F7XTT2|F7XTT2_MIDMI RNA polymerase sigma factor RpoD OS=Midichloria mitochondrii (strain IricVA) GN=rpoD PE=3 SV=1
---------------------PVTNNEEALLKDPLKKVKDGPIITDDELKALSNAQDTE-DTVLDPI-----DGISIGGSKHSEEDDMELD---------
S-DSDLTSE---------S--EENEDAAPRSDDPVRFYLKEMGGQMLLTREKEVEVAKNIEEGRRKRIAYLCHSPLAVRSIIKWYEDLTHDVISLRNIID
LDARYSGEFQKHDFSS-TETE---------------------------AEEDGFERPKVIESLSKAFELGEEILKLQQEKLALALAKPDRA--QQDNYEN
LISQLSDVMLELKLNESNIEKLLEELYEANKNLIKLEMNFLKLAMECGIDRNIFLKDYLGNELNP-WIEK-I-SQ-PKYSKFIEN--GKVEELRQQLRQV
ATNLGIDIESFKELVVEVQKSERMVTRAKKEMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKILRTSRQIMHDIGREPTPDEISKKLGMPVEKVRKVLKIAKEPMSLENPVGADEGSVLGDFIEDKNALQPIDSAVRSNLREVTTRV
LASLTPREERVLRMRFGIGVNTDHTLEEVGQQFSVTRERIRQIEAKALRKLRRPNRAKKLKGFA--
>tr|A0A061QHK5|A0A061QHK5_9PROT RNA polymerase sigma factor RpoD OS=alpha proteobacterium Q-1 GN=rpoD PE=3 SV=1
-------------------DSPILDMSEASVKKMISRARERGYISYDEINKALPSDEIS-EKIEDIMSLLSEMGINVIEGDEPEEDGDSDQEPILTTKDD
-DEEEAFKV------------STVKSESDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIQGLCESPLTFQALVSWSQALNEGRMLLRDIID
LDATMGG-GPEAAVAA-ASAS--------TTKNAPASEQP----AARIDDDDDDDKPETLDKFEAITTTYKKLYRLQDARLEAAAAGEELTTASERKYTK
LHAELVALLRSVRFNNLRIEELVDQLYSLNKRLLALGGRVLRMAETYKIPRSDFLNEYMGQELEE-WLDRVST-----KAKFAAAEATAVANIRDQVAEI
SNETGLQVAEFRRIVHTVQKGEKEARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREATPEELAERLSMPLDKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPVDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|Q9EZB6|Q9EZB6_ZYMMB RNA polymerase sigma factor RpoD OS=Zymomonas mobilis GN=rpoD PE=3 SV=1
-------------------DAPLIDLNETSIRKFITQPKKTEYVTYDQLNEALPQDQDV-GTDRKYNVCPFVNGHQYRKN-EDSGQDGQQEEENAAKK-G
------------------------HY-DQRKKHPTEQMIRKWVRSSFWSREGEIAIAKRIEAGRDTMILGLCESPITFDNIIEWSNALNEGTLQLREIID
LDAMLTQGPSPDQFEE-DGD-G------ELD-----------R-----NMDEEDEKPASLEKFAKIADLYRQFSVLQNARMRALGANEEFPEDQENAYQQ
LREELTAEVESVKFHNARIEFLVEQLYNYNSRLRTLNGQMLRLAERYKVPRDSFLNAYLGNEMEE-WVER-V-FKRQKMGNFTTSEAESIERIRSEVAEI
AQVTGMTVKELRRIVTMVQKGRKRSPHSLKPEWLKPICVWLSLPKNIPIAVCSSLXLFRXAISGLMKAVGKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQILHEIGREPTPEELAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFPR-
>tr|A0A0H3G3H2|A0A0H3G3H2_ZYMMA RNA polymerase sigma factor RpoD OS=Zymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL
-------------------DAPLIDLNETSIRKFITQAKKRGYVTYDQLNEALPQDQMS-EQIEDIMSALSEMGINIVENEDSGEDGQQEEEDAAEEL--
DGGTSPAPA---------I--TTKKETSDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFDNIIEWSNALNEGTLQLREIID
LDAMLTQGPS-PDQFE-EDG--------------------LDENG-QRENMDEEDKPASLEKFAKIADLYRQFSVLQNARMRALGANEEFPEDQENAYQQ
LREELTAEVESVKFHNARIEFLVEQLYNYNSRLRTLNGQMLRLAERYKVPRDSFLNAYLGNEMEE-WVERVSK-----IANFTTSEAESIERIRSEVAEI
AQVTGMTLKELRRIVTMVQKGEREARIAKTEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQILHEIGREPTPEELAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLD-
>tr|W0PAL0|W0PAL0_9BURK RNA polymerase sigma factor RpoD OS=Advenella mimigardefordensis DPN7 GN=rpoD PE=3 SV=1
------------------VSPEEQEARRNRLKLLIKLGKERGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGISVYDQAPDAEALLLSDNAPVASSDD
DVEDEAEAA---------L--TTVDSDFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGLKHMVMAIAACPTTIQEILNHIQRVRDGQAQIDEIVD
GLVTEDGEEYAGSGV-----------Q------EDEEGDDGPAGGMSS-KQLETLRQQALDKFDSVEKWFGKMRSVYEQ-----------GGYRTPDYIR
AQEAILEELMGVRFTAKMVERLADTLRNQVEEVRQLERAILHTVDRVGMPRSYFIKVFPGQETNLNWVQDEVNK-NAAYAETLERSIPDIHEIQQKLIDL
ENSVVLPLKDLKDVNKRMVTGEAKAKKAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRINRQILQETGTEPDPATLAQKMDMPEEKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDNATLAPSDNALYGSMRDAFKEV
LDSLTPREAKVLRMRFGIGISSDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEN
>tr|A0A077DER2|A0A077DER2_9BURK RNA polymerase sigma factor RpoD OS=Basilea psittacipulmonis DSM 24701 GN=rpoD PE=3 SV=1
------------------LSVEELEARKTSLKMLIQLGKSRGYLTYSEINDYLPDDLVDTDAIDGMVSTFTDMGIRIYDQAPDEDDLILLEQTSI-SQDD
DVEDEAEAA---------L--TTVDSDFGRTTDPVRMYMREMGNVPLLSRAQEIDIAKRIEDGLKHTVTAIATCPSIVEQILLEIEKIKDTSVSVEEIID
GLISDDGQEIAGSGV-----------V------DEEEDSNIPTGGMTS-SQIDTLREETLTKFAAVGKNLADMKKLYHD-----------GKYGTPAYQK
VQDKIAQDLMGVRFTAKMVERLATILRNQVEEVRKHERAILHLVDRVGMPRATFIATFVDHETDMNWVKNQLAK-KPPYADVLERTTPDIQELQQKLIDL
EKEVYLPIKDLKDVNKRMVTGETKAKNAKKEMIEANLRLVISIAKKYTNRGLSFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADYA
RTIRIPVHMIETINKITRIRRQILQETGSEPDPSVIAQKTGLSEDKVRKILKIAKDPVSMETPVGDDDDSHLGDFLEDTNTMSPVESAQYESMREAIKEV
LDSLTPREAKVLRMRFGIGISSPQTLEQVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKGFL--
>tr|V8FX08|V8FX08_9BURK RNA polymerase sigma factor RpoD OS=Pelistega indica GN=rpoD PE=3 SV=1
------------------ITPEQIEARRAQMRQLIKQGKDRGYLTYAEINDHLSDDLVDIDAMDSIISTFSEMGIPVYDQAPTAEDLILNDNTPI--SDD
DVEDEAEAA---------L--TTVDSEFGRTTDPVRMYMREMGSVELLTRDGEIEIAKRIEDGLKAMVMAIAASPTTIEEILNHIQRVRDGEAQIDEVVD
GLISEDGEDYAGSGV-----------T------MEEESDDGPAGGMSS-KQIELLHEQALAKFDIVEKAFKKMKAECES-----------GHYQSKAYEK
AHQVIHDELLGVRFTAKIVERLADTLRSQVEQVRSLERQMLSVVDRVDMPREHFIESFPGNETNLEWADKEIKS-GAPYAEKLERFIPDIHEIQQKFIEL
EKLVVLPIQDLKDVNKRMVNGEAKAKKAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRINRQILQETGVEPDPATLAQKMDMPVEKVRKILKIAKEPISMETPIGDDDDSHLGDFIEDLSTLAPADSALQRSMSEVFEEV
INSLTQREGKVLRMRFGIGMSSDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEN
>tr|A6GT63|A6GT63_9BURK RNA polymerase sigma factor RpoD OS=Limnobacter sp. MED105 GN=rpoD PE=3 SV=1
------------------ATVEELELRRNQLKTLIKMGKERGYLTFAEINDHLPDDVTDGEVIEAMVSTFHDMGITVYEQAPDAEALLMNDNAPVGTSAE
DAEEEAEAA---------L--SNVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVQAISACPAIVEDVVGLGQRIAEGLSTVDEVVD
GIIDDSITEEMVEDN-----------E------DEEGNDGGTTSGMSA-RQLEELKKNSLAVFAEIEKQFAKLKKVRAD-----------GGYNTPAYKK
AKEAIAEQFMKIRFTAKQVERLCSILREQVDSVRKIEREIYDIVNRVGVPREQFLDKFRGHEVEAAWVDTFSAS-NAAWAETWARNVPAINELQQKLVAI
QDTVSLPLNDLRAINKQMVSGENRARLAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGIEPDPATLAERMEMPEEKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDNHTLAPQDAAQYSSLRFVTKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEG
>tr|A0A0M9WRW5|A0A0M9WRW5_9BURK RNA polymerase sigma factor RpoD OS=Taylorella equigenitalis GN=rpoD PE=3 SV=1
------------------SKKISDEERRQLVRSLIKQGKDHGYLTYAEINDVLSDDIVDSEAMESMVSTLESMGIPVYEEAPNAEDLILAEPSNV-NDDD
DVDDEAEVA---------L--TTVDSEFGRTTDPVRMYMREMGSVELLNRTKEIEIAKRIEEGLKHMVMAIANSPTTINEILEHIQKVRDGKAQIEEIVD
GLISDDGEEYAGSGA-----------A------DDEESEEAQTGGMSS-LQIEKLREESLAKFDRVQKAFDKMKAEYEK-----------GRFQSQAYNK
ANQQIHDEISGVRFTAKMVEKLAEILRKQIERVRELEKAMLSVVDKVGMPREHFIDSFPGNETNLEWVNDELKK-KPKYAEKLERSIPDIHEIQQKFIDL
EKEVILPIKELKDVNKRMVNGEAKAKKAKHEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RIIRIPVHMIETINKINRITRQILQETGVEPDSAMLAEKMDMPIEKIRKILKISKDPISMETPIGDDDDSHLGDFIEDTSTLSPEEAALQRSMSEVFDEV
INSLTQREGKVLRMRFGIGMSSDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEN
>tr|R7C506|R7C506_9BURK RNA polymerase sigma factor OS=Sutterella sp. CAG:397 GN=BN641_00520 PE=3 SV=1
------------------EDDEDEAGTGNGYSALVRMGRQRGWVTVAEINDKLPDNAVRNEALSELTDQLGRLGIQVFETTPNEEDIIMN-EPVG-D-DE
EISEEDAAA---------M--LTPEESAGLSKDPLRAYLRGVGAHKLLTRAGEIEVAKSIEQYTGKLLTAVIQHPMAVEELIRQSEQLKDDASAIDQVID
GFTDTKELAD-VD-------------E------DAAVQTDIGAAAMTS-EQLEEMRDRALKLFAVCAKEIEKIRASFGV-----------PG-KEAQYDK
ARAKIAEELAPVRFAVKTVMHLADVIGAHMDKVNDSLHRLRNAVDRSGMPVQQFLADMNDRCMDEKWVDELAAA-GKPYSVKIGLNRELILHLQEELRQA
EQTALLSLKDQRDLSRQIKLAQTNLANAKAKMIEANLRLVISIAKGYVNRGLAMTDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWWVRQSVTRAVADYG
NTIRIPVHMTESYNKIRRVRQKLLQETGRNPSDAELSRLSQVPLAKVQLLTQAMRGVESIDAPIGDDEDARRIDFVKGDETDDPQVRFLRTAMEGEIQHC
LSELQPREAQVLRLRYGIGTNHDHTLEEVGQAMGLTRERVRQIESAAIRRLRSPEFQERLRDHSNN
>tr|K1JGX4|K1JGX4_9BURK RNA polymerase sigma factor OS=Sutterella wadsworthensis 2_1_59BFAA GN=HMPREF9465_01505 PE=3 SV=1
------------------SGSRRSVTAGNGYGALVRLGRSRGWVTVEEINDHLPESAVRTENVQEITEALGRLSIKVFETRPDEDDLLIT-GNGV-DEAE
DIDEDDAAA---------M--LTPEESAGLSKDPLRAYLRGVGSHKLLTRAGEIEVAKSIEMFTGRLVSTLVQYPMAVAELCKMAETLKDTSVSVDTLVD
GFTDNLEEVDAVS-------------S------DDDIATDIGAAAMTA-DQLEEMRARVLDIFENCGRHLETVRANFGP-----------KG-DAEAYKA
ACAAIAELLAPVRFSVKVVTQLSEDISKHMDEVTTSLKNVRRVADQCRMPQRATLDVINGPT-ADGLFEAIAES-ETPWAPAVARNLGVLHEEQRHLRGF
EERAMMTIASQRELARLFRLAQTNLMQAKARMIEANLRLVISIAKGYVNRGLAMTDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWWVRQSVTRAVADFG
NTIRIPVHMTESYNKIRRHKQHFLQEHGRQPTEQELADLAELPLAKVQLLTQAMRGVESIDAPIGDDEDATKLDFVRGDEHDDPSRAFQDRSMIECIKKS
LDDLAPREAQVLRLRYGIGTNKDHTLEEVGHALGLTRERVRQIESAAIRKLRSPEFQERLRDYLTE
>tr|R7I4J7|R7I4J7_9BURK RNA polymerase sigma factor OS=Sutterella sp. CAG:351 GN=BN620_00637 PE=3 SV=1
------------------SREAPSEEVTKGYKALVKLGRQRGWISVEDINDLLPESAVSTEQVSDISEQIAILGIQVFEQAPDSDDIILA-SVTS-DSRD
DIDEDDAAE---------M--LSPEESAGLSRDPLRAYLRGVGTHKLLTREEEIEVAKQIESYTQKLVSVLAGFPFVMDSLLKIRDQLQSGELTIDNVAD
GFNEPEGTEEV---------------A------EDSSNGDIGAAGMTT-EQLSDMKDRVVSIITECEDHYKLVKEYFPD-----------PE-QHAAYSR
ERRAVVKGLSQIRFSGKIVSSLSDQVTEHVSGVNKLLSRMRALVDDCGIPIDKFLKDFDHRATDPDWFPSIVRQ-GVSYSKRVERQEAVLMAMQEGLRNE
EKASCITIPEQRELAKSVKIAQSNLSAAKSKMIEANLRLVISIAKSYVNRGLAMTDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWWVKQSVTRAVADYG
ATIRVPVHMTESYNKLRRIKQRYLQTHGKAPSDSELAKLGDMPLSKVHLLMNAMRGVESIDAPIGDDDDATKLDFVRGEDDADPQRRYMETAMGDEIVRS
LDDLTVREASVIRLRYGIGSNRDHTLEEVGKALGLTRERVRQIESAALRKLRSNAAKARLKDYKDF
>tr|R7KN55|R7KN55_9BURK RNA polymerase sigma factor OS=Sutterella sp. CAG:521 GN=BN692_00178 PE=3 SV=1
------------------VQPEHEEGAENGYRQLVRFGRSRGWVTIAEINDLLPESALRSDALTEITLGLGRFGVQVFDHTPDEDTVAMLAEQQA-TVDD
DIDEEDAAT---------I--LTPEESAGLSKDPLRAYLRGVGSHKLLTREGEIEVAKSIEQHRARLVQVVLMSPLSIQELLVLAQKIREESETIDNVID
GFTDVAGEE--IQ-------------D------DGDLNTDIGAAAMTV-EQLEEMKERALEMFDRLKGYLETMRESFGD-----------PA-KKKDFER
ARQNISDELSIVRFSVKTVTHLADILAEHMSKVTDTMYAMRDVVNKAHMPQERFVKGFNERCCDRQWLNDEVAS-GESWSAALEQHRGVFEELQARLIGL
QDDASLPIAEQRDLHRSMTVAQASLSKAKAKMIEANLRLVISIAKGYVNRGLAMPDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWWVRQAVTRAVADYG
NTIRIPVHMTESYNKIRRIKQKYLQEHGKQPSDNELAQLSGVPLPKVQLLIQAMRGVESIDAPIGDDEDATKLDFVRGDEEQDPQRRFMVTAMEEEIKKS
LDRLTDREATVLRLRYGIGTSHDHTLEEVGRSMGLTRERVRQIESAAIRKLRSPDFAERLRDYVQT
>tr|E7H428|E7H428_9BURK RNA polymerase sigma factor OS=Sutterella wadsworthensis 3_1_45B GN=HMPREF9464_01466 PE=3 SV=1
------------------DQDADNRTPRNGYGELVRLGRSRGWVTLADINDYLPESALRTENLQEVTEQLGRLGIQVFEAPPDEDDILIN-GMGG-DNSD
DIDEDDAAV---------M--LTPEESVGLSKDPLRAYLRGVGSHKLLTRAGEIEVAKSIEQFTIKLVATIVEYPIAVEEILRLGEALKDENTAVDTVVD
GFNDAAAEENA-N-------------S------SDEIATDIGAAAMTV-DQLAEMRARVLSLFELARKSLDRVRETYGD-----------PK-REKEYRK
ALADMSAALSPIRFSVKLVTQMTDHISQHMDEVNNTLKKMRATANQCRMPQVQVVELLKSGVTDPECFEKISAA-GKPWSDAVSHSMAVLKEEQAVLISA
EREGLLKLSEQRELGRAMKLAQTNLMQAKAKMIEANLRLVISIAKGYVNRGLAMTDLIQEGNLGLMKAVDKFEYRRGYKFSTYATWWVRQSVTRAVADFG
NTIRIPVHMTESYNKLRRQKQKFLQQHGRQPTEQELAELADLPLQKVNLLTQAMRGVESIDAPIGDEEDATKLDFVRGNERDDPGVAFQDRSMIDCIQKS
LNELNPREAQVLRLRYGIGTNQDHTLEEVGRTLGLTRERVRQIESAAIRKLRTPDFTERLRDYLQS
>tr|A0A0Q8RAE2|A0A0Q8RAE2_9BURK RNA polymerase subunit sigma-70 OS=Noviherbaspirillum sp. Root189 GN=ASE07_13935 PE=4 SV=1
--------------AESGMSDEELAVRRQKVSALVRAGKERGYLTHAEIYDHLPEESTSQEVIEGLISTLGDMGITVYEQAPDAETLLSDNVA-NATSDE
DAEAAVQTA---------L--STVDADFGRTTDPVRMYMREMASVPLLTRQGEIDIARRIEAGFKDMMQAVSACPTTIAEILAHAEKIRNEEAPIDELVD
SLVDPTTLDDAPMVVAAAAASDEE--EEDLDDEIE-DDEEEESSANMSEQQLGELRRQALEKFALVATEFGNMQTALES-----------DGYNSPAYVR
AQQVISQELLSMRFTAKLVEKLCDMLRSRVDEVRQIEKQILDIVNKCGMPRGHFISVFPGKETDLEWVDREADS-DKAYAPILRRNGPAIKEYQKKLLEL
QKSAGVPLSELRKINKQMTTAEMRARQAKREMTEANLRLVISIAKKYVNRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRVPVHMIETINKMNRISRQILMETGSEPDLPTLAAKMDLPEKKLREIMKIAKEPVSMDMPMGDDGDSQLGDFIEDSTTLAPADAAMHASMRSVIRDV
LDSLPPREAKVLRMRYGIDMTSDATLEEVGKQFDVTRERIRQIENKAMNKLRHASRADRLKTFLES
>tr|A0A0C2C0X4|A0A0C2C0X4_9BURK RNA polymerase sigma factor RpoD OS=Herbaspirillum sp. TSA66 GN=rpoD PE=3 SV=1
--------------ASTGMSAEDMEVRRKQITALVKAGKERGFLTHAEIHDHLPDDSTNQDTLDSVISTLTDMGIAVYEQAPDAETLLSDNVV-SVT-DD
DAEAAVTTA---------L--SSVDADFGRTTDPVRMYMREMATVPLLTRQGEIEIAQRIEAGFTDMMQAVSACPAAIAEILAQVERIRKEEIRIDDVVD
GLVDPNVSDEAVTAVSTA--AEED--DEELDDDAA-DD--EEDSASLSEEQLAQLQKTALERFALIAAHFDKMRAAAEQ-----------EGSQSAAYRE
AQQAITADLLGMRFTAKVVEKLCDMLRSQVEEVRRLERQILDIVNKCGMPREHFIKVFPGNETNLAWVDAEADS-GKAYAVTLRRHIPAVKEYQQRLVDL
QARVSLPLAELRKINKQMTTGEMKARNAKREMVEANLRLVISIAKKYVNRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRVPVHMIETINKMNRISRQILMETGSEPDAATLAKKMDMPEKKVREILKIAKEPVSMDTPMGDDGDSQLGDFIEDGSTLSPADAAMHTSMRNVIRDV
LDSLPAREAKVLRMRYGIDMAGDATLEEVGKQFDVTRERIRQIESKAMNKLRHASRADRLRTFLES
>tr|A0A0P0MQH8|A0A0P0MQH8_9BURK RNA polymerase subunit sigma-70 OS=Massilia sp. WG5 GN=AM586_10030 PE=4 SV=1
--------------AEQGFSGEELEKRRTQLKNLINMGKERGYLTHAEINDHLPENIIDPEAIEGIIATFNDMGIAVYERAPEAEMMLSDAVV-TPTSED
EVEAAAATA---------L--STVDSDFGRTTDPVRMYMREMGAVSLLTREGEIAIAKRIEEGLKDMVQAISACPVTISEIIALSHKIASDELKIDDVVD
GLMSPDEGGAAPVATAAAAAS-PD--DEEE-EEIE-DEEEEEGGAGYSAEQLAALKKTALEKFAIIEKQFDKMGHAFKT-----------HGYGSLQYVA
AQDVISTQLLGIRFTAKIVEKLCDTLRGQMDEVRSIERAVLDIVNRCGMPRAHFIKVFPGNETDLEWVQREVDC-AYPYSAVLSRNAPAIMELQRRMIDL
QARVALPLADLRKINKQMAAGEKRARTAKREMTVANLRLVISIAKKYINRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRSIADMA
RTIRVPVHMIETINKMNRISRQIMQETGTEPDMATLAAKMEMPESKVREIMKIAKEPISMETPMGEDGDSQLGDFIEDNATLAPLEAAMHASMRGVIKEV
LDSLTPREAKVLRMRYGVEMSNDHTLEEVGKQFDVTRERIRQIEAKAMSKLRQPSRSDKLKTFLQN
>tr|K9D8F8|K9D8F8_9BURK RNA polymerase sigma factor RpoD OS=Massilia timonae CCUG 45783 GN=rpoD PE=3 SV=1
--------------NEAGFSEAELEKRRQQLKNLINMGKERGYLTHAEINDHLPENIIDPEAIEGIIATFNDMGIAVYERAPEAEMMLSDQAV-TPTSED
EVEAAAATA---------L--STVDSDFGRTTDPVRMYMREMGAVSLLTREGEIEIAKRIEQGLKDMVQAISACPTTISEIIALSHKIASDELKIDDVVD
GFVDLEDTPAPAASVAHAAAAEED--EEEEEEVED-EEEEGEGGAGYSAEQLAQLRKGALEKFALIEQQFDLMGHAFKN-----------EGYGSPAYEE
AQAVISYELLGIRFTAKVVEKLCDTLRGQMDEVRSIERAVLDIVNRCGMPRAHFIKVFPGNETDLQWGDREVDC-AYPYSAVLSRNLPAIKELQQRMIDL
QARVALPLADLRKINKQMAAGEKRARQAKREMTVANLRLVISIAKKYINRGLQFLDLIQEGNIGLLKAVDKFEYRRGYKFSTYATWWIRQAITRSIADMA
RTIRVPVHMIETINKMNRISRQIMQETGSEPDLPTLAAKMEMPENKVREIMKIAKEPISMETPMGEDGDSQLGDFIEDNATLAPLDAALHASMRNVIKEV
LDSLTPREAKVLRMRYGVEMSNDHTLEEVGKQFDVTRERIRQIEAKAMSKLRQPSRSDKLKTFLHN
>tr|T2DLN2|T2DLN2_ALTMD RNA polymerase sigma factor RpoD OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VESEIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGINQVQCSVAEYPEAITYLLDQWDLYEAEEIRLSDIIS
GFVDPNDDQDLAPTA-THVGSEEELD--DEDGDD--------DEDEDEEEDDSGVDPEARERFSELREQYIKTREVIEK-----------KGRSHADSRT
QINALSDVFKEFRLVPKQFDRMVKNMRAMMDKVRIQERLVMKCVVNAKMPKKDFIKAFAGNETSTAWLH-EAVKSGAPYAADLAVNQEEIERCISKMNQV
EQETGLVIADIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTIIQPLDSATGGSLKGATQEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDE
>tr|A0A090AJK5|A0A090AJK5_9ENTR RNA polymerase sigma factor RpoD OS=Candidatus Tachikawaea gelatinosa GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLNQYEKVQLGESKLSDLII
GFVDSNIPQNLNSIN-GKIITEED-------NIN--------ENSDENDEEDNSIDPEAREKFLELRNYYEIACDCIKK-----------KGRNHVDALS
AIQDLSNIFKQFRLIPKQFDYLVNNMRKMMDRVRFQERIIMKCIEKSKMPKKIFINSFTGNETNLSWFK-SALEMNESWSKKLYEVKKDMHFCLEKLIQI
EKETGLTINQVRDINRRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQEIGREPTPEELAEKMLMPEEKIRRVLKIAKEPISMETPVGEDEDSHLGDFIEDTTLDLPLDSATSENLKSATHDI
LSGLTAREAKVLRMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSELLRSFLDD
>tr|J3TXQ5|J3TXQ5_9ENTR RNA polymerase sigma factor RpoD OS=secondary endosymbiont of Ctenarytaina eucalypti GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VEAEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYERVEAQEVRMSDLIT
GFIDPNAEEDMTATV-THIGSVDDST--ADDDEE--------DSSGDSAEDDHSIDPEARQKFLELREQYEITRNMIKA-----------NGLNHITSAS
EILNLSDVFKQFRLVPKQFDYLVNNMRAMMDRVRNQERFIMKCVEISKMPKKSFVTLFSGNETSDSWFK-AALSMNKAWSERLHAVDDEVHRSLKKLRQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEIGREPTPAELADRMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHEV
LAGLTVREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
>tr|Q8D286|Q8D286_WIGBR RNA polymerase sigma factor RpoD OS=Wigglesworthia glossinidia brevipalpis GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VESEFGKTTDPVRMYMREMGSVQLLTREGEIDLAKRIEYGINQIQCAIVEYPKAIIYLLDQYKKTTTGESKLSELIT
GFVDPNIVVDSSNID-LN---TEDIS--SEEE--------------NNTSEEIDIDKEANKRFIELQEQYKISFNTIKE-----------YGRMHEFSIK
EIIYLADIFKQFRLVPKQFDYLVFIIRSEIEKIRFYERRIMRCVNICKMPKKFFISLFSGNETNDVWLK-KALSLDKPWSRKLYKLNKPICLILNKLKII
EINSGITIEQAKDINKRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELSEKMLIPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFLEDTSLDLPLDSATSESLRSATHDV
LSGLTAREAKVLKMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLDD
>tr|H6Q5T2|H6Q5T2_WIGGL RNA polymerase sigma factor RpoD OS=Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) GN=rp
----------------------------------------------------------------------------------------------------
-----------------------VESDFGRTTDPVRMYMREMGSVELLTREGEINLAKRIEDGINQVQCSVAEYPETITYLLKQYNFILKGELRLSDLIT
GFIDPNISMDAAAIS-ATIISAEEIS--V-DD--------------HHVTDENNIDVEAHQKFLELQQQYDITYNSIHI-----------HGRNHVNSIK
EITKLADLFKQFRFVPKQFDCLVHIIRAVIAKIRIHERRIMQCVSVGKMPKKSFIALFTGCETNENWLK-KALSLNKSWSKTLNKLYHSIYFSINKLKLI
ENETGLTIKQAKDINRRISLGEEKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELSEKMFMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTSLDLPLDSATSESLRSATHDV
LSGLTPREAKVLRMRFGIDMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLDD
>tr|Q493Y1|Q493Y1_BLOPB RNA polymerase sigma factor RpoD OS=Blochmannia pennsylvanicus (strain BPEN) GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VDSELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVSEYPEAITYLLEQYKRVETGETRLSDLIT
GFVDPDINENISIHT-NIN--AEVTT----ESIS--------DDDEEENNDENNIDPEAYVKFTALRNQYDITRKTIKY-----------NGRNHIKSSK
EILKLSEIFKQFRLVPKQFDYLVNNMRSMMERVRKQERLIMKCVEISKMPKKNFIALFSGNQTNKTWFN-TALSMHTSWSEKLYKVDEDVQNSLSKLHQI
EKETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMLQEIGHEPTPEELAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATSDNLRTATHDI
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLDD
>tr|Q7VQR2|Q7VQR2_BLOFL RNA polymerase sigma factor RpoD OS=Blochmannia floridanus GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VDTDLGRTTDPVRMYMKEMGAVELLTREGEIDIAKRIEDGIHQVQCSVAEYPEAITYLLEQYKRVKTGEVRLSDLVT
GFVELNLEHDTLSTK-TIHDGPEIIN--SPIIID--------DEENTENDDDNNVDPEARKKFTDLQKQYEKTRITIKY-----------NGRDHHQSLL
EILKLSEVFKQFRLVPKQFDYLVNNMRSMMDRIRLQERLIMKCVDVSQMPKKKFINLFSGNETSKDWLN-KALSLNTSWSQKLHNVDSKIQQSLYQLHQI
EKETGLTIEQIKNINKRMAIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQILQETGCEPTPEELAERMFMSEDKIRKVLKIAKEPVSMETPIGDDEDSHLGDFIEDTNLDLPLDSATSDNLRAATNDV
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLDD
>tr|C5WDL1|C5WDL1_9ENTR RNA polymerase sigma factor RpoD OS=Candidatus Ishikawaella capsulata Mpkobe GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VQYEIGTTTDTVRMYMREMGSVELLTRDGEIDIAKRIEDGINQIQSSVAEYPKAIIYLLDQYDKIDSGELRLSDLIS
SFVDPNAKIEPTFIP-DHIVSNIDLD-----------D-D--EEDHDHEDDDNTIDPEAREKFLLLRKQFELTARVIKN-----------KGREHIDALQ
EIKKLSDIFKQFRLVSKQFSYLVNNMRHIMNRIRRQERIIMKYVEQYKFPKKKFIAMFTGNETNIDLLK-SILIKHKNNYQNIEEMEKHLMQCLQQLIVI
EQETGLKIEQIKDINRRMAIGEAKTRRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRHILQETGHEPTPEELSEHMLIPEEKIRKVLKIAKEPISMETPLGDDEDSHIGDFLEDNTIKLPLDSATSDSLRTATQNV
LTGLTAREAKVLRMRFGIDMSTDHTLEEVGKQFNVTRERIRQIEAKALRKLRHPSRSEVLRSFLEE
>tr|A0A0A0EQL9|A0A0A0EQL9_9GAMM RNA polymerase sigma factor RpoD OS=Lysobacter daejeonensis GH1-9 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------LDAEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQMQAALASFPGTIASILEDYEQHKAGKKRLAEIIV
AFNDLIDEPTPEPVL-EEVAD------ADSEADEEDDA-D--GGSDTDDT-PTGPDPVVANRMQVLADTYAKFEKAHAK-----------HGPAHKSVLK
LREEMAEVFVTFKLPLPLTDVLVKNLRDVQAKVKEHERRILDATRIAKMPRKDFIRAWDGNQTNLEWTD-ELIKRKQKWSSGLRDVKDQIVAEQQATLDL
ESAILVTLADLKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIEATTNINLTETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI
>tr|A0A0A2WYD6|A0A0A2WYD6_9GAMM RNA polymerase sigma factor RpoD OS=Lysobacter dokdonensis DS-58 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------LDSEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLNQMLSALASFPWSIQLLLEEYDLHKAGKKRLAEIVA
GFNDVEEPAPEVIPV-AEI--------NAEVEEEEAAD-G--DDAAEETG-PTGPDPAVLRRMDAMGALYQKFQKSYQK-----------NGPTAKPVAK
LREEMAEIFMTLKLPLPLTDTLVRKLRDVVGEIKDHERRILDATRVARMPRKDFLRAWEGNQTNLGWVD-DVLKRKQKWSSGLRDVKDQIIAEQEATIAV
EQALYLTLPDIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIESTTNINLSETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI
>tr|E6WX09|E6WX09_PSEUU RNA polymerase sigma factor RpoD OS=Pseudoxanthomonas suwonensis (strain 11-1) GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------LDSEGGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLGQVQAALGSVPASVEALLEEYELHKAGKKRLAEVVV
GFNDLLDETPEPPAP-VEDTA------DAEGEDEEEDV-A--EDDEAEAG-PTGPDPAVARRMEQLAADLAKFKKAHAK-----------AGAQDKKVIK
LRAEMAEQFVTFKLPLPLTDVLVRKLRDVLTEIKDRERRVLHATNVARMPRKDFIRAWEGNQVNLEWVD-EVLKRKQKWSSALRDVKDQIIAEQQATIAI
EQAMCLDLSDIREIGRQLAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQQYGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIDSTTNTNLMETVRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDI
>tr|S6GN51|S6GN51_9GAMM RNA polymerase sigma factor RpoD OS=Osedax symbiont Rs2 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VESDAGRTTDPVRMYMREMGTVELLSREGEIVIAKRIEEGIRELMSALSAFPTSVEIILEAYNKVIDEEGRLSDIFS
GYIDPDSPDAKPAPP-AL----------TPAQIQNAQN-N--NDDDEDEK-ERGPDPEAKIRFGKIQKCLDEYYSAVEK-----------HGARSLQAEK
AQIELSLVFSPIKLSPRFYERLVSRVRDYIGRIRTQERKIMRCTQRCKIPRKEFIKTFPGNETNQDWFQ-QLVDKKNDYSNAIASNLPDLQRAQRRLKQL
QQETGIELAELKDINRRMSIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELSERMEIPEDKIRKVLKIAKEPISMETPIGDDEDSSLGDFIEDVNHSSPVDSATGEGLCEATKEV
LAGLTAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFLDE
>tr|A8H148|A8H148_SHEPA RNA polymerase sigma factor RpoD OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VEAELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDIIS
GFVDPNA-EDVAPTA-THVGSDDELD--DEDDDD--DD-D--DDDDEEEEGPKGPDPEAKEKFTTLRLAHENALRIIAD-----------KGRGHPESTV
ALFEIGEIFKEFRLMPKQFDRLVKNMRSMMDKVRVQERLIMKCVEQAKMPKKNFVKVYTSNESSIEWFN-DELASGKPYVEGLQMVEFDVQRCRAKLDAI
EVETGLAIGAIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESLKNATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLDE
>tr|Q12KB3|Q12KB3_SHEDO RNA polymerase sigma factor RpoD OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VESELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGINTVQSSVSEYPQAIAMILEQFDQYEADELRLTDIIA
GFINPDE-DDVAPTA-TNIGSEAQQN--DDD--NDDDD-D--SDDEEEEEGNKGPDPEAKEKFTELREVYEKGLAVIAE-----------KGRDHPEAIG
ALFVIGELFKEFRLVPKQFDRLVKSMRTMMDRVRVQERLILKCVEQAKMPKKNFVKAFTSNETNLDWFN-KEMNSNKPYADALKAVAHDVNRCSSKLTAI
ELETDLTISSIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKNATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLDE
>tr|A0A094JU48|A0A094JU48_9GAMM RNA polymerase sigma factor RpoD OS=Shewanella sp. YQH10 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VENELGRTTDPVRMYMREMGTVELLTREGEIQIAKRIEEGINEVQGSVAEYPQAIAMILEQYDQYEADQIRLSDIIS
GFVNPDE-DDVAPTA-THIGSEEELD--DEDDMDDDDD-D--SDDSDDDDGNKGPDPEARERFTQLRTSFENTLKVIEE-----------KGRNHPMAVG
ALFEIGEIFKEFRLVPKQFDRLVKNMRGMMDKVRVQERLIMKCVEYSKMPKKNFVKQFSGNEANPQWFF-DEIAAGKPYSEALKAVEEDVVRCHSKLHAV
EVETGLNIMAIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKQATHEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSFLDE
>tr|S3P0I5|S3P0I5_9GAMM RNA polymerase sigma factor RpoD OS=Acinetobacter rudis CIP 110305 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VENEPGRTTDPVRMYMREMGTVELLTREGEISIAKRIEEGIRDVLHSIAYWPNAVEVVLTEYKEYQNGERRLADILS
GYLDPETNEEIPEVI-VEEEED-TASKPDV-KLDDEEE-EEES--DSEDEAESGPDPEARVRFEELENAWNQAKQVIAQ-----------HGRNSDVANE
AMQSLATIFMMFKFTPRLFDTISEMIRGTHEQIRTSEREVMRAVRRGRMDRTQFRTSFPTQESNPAWLDEQIAKASPEVKAHLEKVRPDILAFQQKIADI
ENDLSLNVKEIKEISKRMAIGEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNITSPVDAATSEGLKEATREV
LENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEN
>tr|A0A0E2GMP4|A0A0E2GMP4_ACIRA RNA polymerase sigma factor RpoD OS=Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VENEPGRTTDPVRMYMREMGTVELLTREGEISIAKRIEEGIRDVLHSIAYWPNAVEVVLKEYKDYQEGERRLADILS
GYLDPESDEEIPEVI-EDAVLDETASKSEV-KLDDEEE-EEESESDDDSEADSGPDPEAKVRFTELETVWQETKSVIEK-----------HGRDSAEAKA
ALEALASVFMMFKFTPRLFDIISEMIRGTHEQIRTSEREIMRAVRRGRMDRTQFRTSFPGQESNPGWLDEQMAKASPDIKGHLEKVRPDVLAFQQKIADI
EKELGLNVIDIKDISKRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQNITSPVDAATSEGLKEATREV
LENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEN
>tr|A0A0F3LA02|A0A0F3LA02_9GAMM RNA polymerase sigma factor RpoD OS=Acinetobacter brisouii GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VENEPGRTTDPVRMYMREMGTVELLTREGEISIAKRIEEGIRDVLNAIAYWPNAVEVVLQEYEDFNTGERRLADILS
GYLDPETDDDIPEVL-EEEETDDDTSKPEV-KLDDDE--EEESEGDDDSEGDSGPDPEAKVRFAELEQAWSKTKAAIQQ-----------HGRNSKEADE
ALVTLATVFMMFKFTPRLFDIISEMIRGTHDRIRTAEREIMRAVRRGRMDRNLFRTTFPKQESNPAWLDDQLAKVSPDIKPYLEKVRPDVLAFQQKIADI
ENELGLNVQEIKDISKRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQNITSPVDAATSEGLKEATREV
LENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEN
>tr|N9RKY5|N9RKY5_9GAMM RNA polymerase sigma factor RpoD OS=Acinetobacter sp. NIPH 2100 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VESEPGRTTDPVRMYMREMGTVELLTREGEISIAKRIEEGIRDVLHSIAYWPNAVEVVLQEYNDFLTGERRLADILS
GYLDPESDEEIPEVL-EEETEEEKSPAKDV-KLD-DDE-EEESEGDDDSEGDSGPDPEAKARFTELENAWNETKAIITK-----------HGRNSAEANA
ALESLAAVFMMFKFTPRLFEIISEMIRGTHEQIRSNEREIMRAVRRGRMDRNQFRLTFPEQESNLAWLDEQIAKAPAETKGHLEKVRPDVLAFQQKIADI
EKDLGLNVKDIKDISKRMTVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKINRVSRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGNITSPIDAATSEGLKEATREV
LENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRSFLEN
>tr|S3DKU9|S3DKU9_9GAMM RNA polymerase sigma factor RpoD OS=Candidatus Photodesmus katoptron Akat1 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VENEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGISQVQNAVVEYPGAIPYILEQFDKVQSEKLRLTDLIS
GFIDPSDYGSGAPTA-THVGSDSDLE--DED------------------EEMIGIDPEAFSKFSKLRDTYKKLQLEIKI-----------YGADSEKVVQ
STKILQQVFSEFRLTPKQFDYLVSELRTAMERVRTQERLIMYTVEYAKMPKKLFIALFVGNESSGEWLN-KLFVSDNPYIEKIKCHENDIRRSIQKLNLI
ENETSLKVQNIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQIPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDDATSTSLKVATRDV
LSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDE
>tr|C9YG02|C9YG02_9BURK RNA polymerase sigma factor RpoD OS=Curvibacter putative symbiont of Hydra magnipapillata GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
----------------------------------MRMYMREMGTVELLTREGEIEIAKRIEGGLMDMMEAISASPATIAEILRLGEEIREGKVVITTIVD
GFSNPNEAD---DYV-AEE--------DFDEFDEDDDD-G--KGGSKALTKKLEELKKALERFDKMRELFEKVHKVYDK-----------EGYGTPAYVK
AQKALSDELMTIRFTAKAIEKLCDMVRAQVDDVRKKERELRRIVDKCGYPQENFIADFSGRDKAGNKVASKQAASGKSWAAVMGRNIPPVQDLQQKLIDL
QAQVVVPLDQLKDINKRMNEGEYASRAAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQHLQEFGFEPDASVLAEKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSANTAPMEAAMQAGLRDVVKDI
LDSLTPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFTDT
>tr|A5EXR4|A5EXR4_DICNV RNA polymerase sigma factor RpoD OS=Dichelobacter nodosus (strain VCS1703A) GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------ADAEVGRTTDPVRMYMREMGAVDLLTREGEIAIAKRIESGLDLVQQTLAEFPLAIAALVAEFERVEAGEGRLSDLVN
GYGDPFAQKTEEATD-DEETESSEDDELLTQAGDDDED-GDE---STEAEITVNDSLEAREKLLELSQVFKKLKTALDK-----------GSLATKKNQK
LHDEVKQYFVAFSFPQKTMDLMEAQLEEPMEMIHAIERRLMRVIEKSGMPRKSFISDFPGHETDLEWVV-KQSTLRRKYAEKLKLMIEDVQAEQQKFLEV
EKTYGMSIQQIKDIYRQLAVGKERAKRAKEEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRMLQQKNGRDPTPEELSVAMDMPEDKIRKVWKIAKEPISMETPIGDDEDSHLGDFLEDSNVISPLEAATTRGLSEATNEV
LASLTPREERVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPNRSELLKSFLSD
>tr|G9ZF86|G9ZF86_9GAMM RNA polymerase sigma factor RpoD OS=Cardiobacterium valvarum F0432 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
------------------------------------MYMREMGAVDLLTREGEIAIAKRIEAGLNTVQQTLAEFPLAITALLEEFAKTEAGESRLGDLVN
GYGDPYADKTEEILA-AGTG--NSEDD-SISSGNDDED-VDDDGNLPEEATGNQDTLNAREKLVELTAIHKKLMTALSK-----------GSLDDKKIQK
LHGEIKEHIAAFSFPQKTIDLMEAQLNIPNEEIRAVERRLMRIIERAGMPRKTFVQEFPGNETNPDWIV-AQSKQRRKYAEKLKPLITEIQVEQEKYLDI
EKRYRMSIIQLKDIHKRLSIGKAQAKRAKEEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRTLVQKNGRDPTPEELAEAMDMPEEKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNVMSPLEAATTRGLSEATNEV
LASLTPREERVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPNRSELLKSFLND
>tr|C8NCL2|C8NCL2_9GAMM RNA polymerase sigma factor RpoD OS=Cardiobacterium hominis ATCC 15826 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------NEAEIGRTTDPVRMYMREMGAVDLLTREGEIAIAKRIEAGLNTVQQTLAEFPFAVSALLEEFAKIEAGEGRLSDLVN
GYGDPYANKEEETLL-ESSD--DSET--LISAGDDDED--DDSAAPLEEAPNNQDALLAKEKLHELAAIHKKLMTALNK-----------GSLDDKKNQK
LHGEIKEYIAAFSFPQKTIDLMEAQLNVAAEEIRDIERRLMRVIERAGMPRKLFIQEFPGNETNPDWIV-GQSKQRRKYAEKLKGMITEIQVEQEKYLEI
EKRYHMSILQLKEIQKRLSMGKNQAKRAKEEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRTLVQKNGREPTPEELAEAMDMPEEKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNVMSPLEAATTRGLSEATNEV
LASLTPREERVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPNRSELLKSFLND
>tr|K2CLK2|K2CLK2_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------ASDEFGGGNDPVRMYMREMGTVELLTRAGEIVIAKRIEEGMKQVMNALCQYSENISDILHEYDRTKTEEFRLSDLIN
GFILDETFQETENLP-PELEIKEDVVVALP---EADED-A--EGTTEEDP-EGGPDPVAKTKFDALRDLYEVTLKLEKK-----------HGRNNKKAIQ
QREKLATLFMEFKLIPRQFDRLMRKMRGMLDQVRECERGVMNCVNDCNMLRKHFIDSFPKNEANLNWVK-TQINLKKEFSPALKEHQDEVIRIQKKLQAI
EEKTNLSIQEIKEINRQISIGETKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQETGQEPTPEVLALKMEMFEDKVRKILKIAKEPISMETPIGDDEDSHLGDFIEDANLFSPLDSAINEGLREATRQV
LTSLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKMRHPSRAELLRSFLEE
>tr|K2BA88|K2BA88_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------ASEELGRTTDPVRMYMREMGRVELLSREGEIAIAKRIEEGMNQMLTTLAYQPQMIAEVLADFDRVEKGELRLSDIIS
GYIEPNLEGEEGEGD-DEEGAK-AAAPAPPVAVDAEES-E--EAADPFDD-DAGLDPVAKERFEELRKFYNEAITTEKK-----------HGAKHKKTVV
KRDELAKYFMDIKLSPRQFNKLSRKMRSLLDEIRAQERAIMDCVNKGKLPRKAFISAFVNNETNLEWL---TQSQSKAILAELEKFMPDIHRSQKKLIAL
EEQMRMNIAEIKEVNRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQLLQETGLEPTPEELSRKMSIPEDKIRKILKIAKEPISMETPIGDDEDSHLGDFIEDGNTISPIDAATNFGLSESVQKV
LASLTPREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEQLRSFLEE
>tr|A0A0H6BA16|A0A0H6BA16_VIBCL RNA polymerase sigma factor RpoD OS=Vibrio cholerae GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLIS
GFVDPNDMETEAPTA-THIGSEADLA--DEDDAVEDED-EDGDGESSDSEEEVGIDPEAREKFNELRGKFQNLQLAVNE-----------FGRDSHQASE
ASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKVVEVAKMPKKSFIALFTGNESNEEWLD-KVLASDKPYVAKVREQEEEIRRSIQKLQMI
EQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDV
LAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDE
>tr|A0A098GC78|A0A098GC78_TATMI RNA polymerase sigma factor RpoD OS=Tatlockia micdadei GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VDKETGRTTDPVRMYMREMGTVELLTRDGEIRIAKRIEEGIYQVLKSLAHYPETVELVLQDYDRVATEEMRLSEIIS
GFADIEEEAPAANIG-SMLDE-QEIIEEEEIIAVEDED-G--EGGGIVET-DDGPNPEAKIYFDELRENYHHAMKSLKE-----------HGRTNSKTVE
LLDTMSESFLKLKLTSRQVDRLTRHFRQLRNHIREFERSVMRCIEKARVPRKLFIDTFPGQETDIKWLDDIRNHGKKLEMQRIEEYRDEILRLQSKLAAF
EEEYGLTISEIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQETGREATPEELAEKMELSEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDNNIESPIDCATAEGLREATLEI
LETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLEG
>tr|W2V6N3|W2V6N3_9GAMM RNA polymerase sigma factor RpoD OS=Legionella oakridgensis RV-2-2007 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VDKETGRTTDPVRMYMREMGTVELLTREGEIRIAKRIEEGIYQVLKSLAHYPETVALVLEDYQRVLVEEIRLSEIIS
GFSDADDEAPPSSIG-SMLDE-QAIVDADLI--GDSDD-G--DDGSISDD-DEGPSIEAKSYFDELQVNFDNAMVALKE-----------HGRTSKKTVE
LLEVMSDSFLKLKLTSREVDKLTRHFRILRNDIREFERNVMRCIEKARIPRKLFIDTFPGQETDVQWLDRIAKNEKKLDLSRIEEYAEDIKKIQLRLADF
EKEFGLTISEIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQILQETGREATPEELAEKMDLSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDNNIESPIDCATSEGLREATLEI
LETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLEG
>tr|H1LNK8|H1LNK8_9PAST RNA polymerase sigma factor RpoD OS=Haemophilus sp. oral taxon 851 str. F0397 GN=rpoD PE=3 SV=1
----------------------------------------------------------------------------------------------------
-----------------------VESEIGRTTDPVRMYMREMGTVDLLTREDEISIAKRIEEGIDEVQTSIAAYPEALNELLKNYDDVEKGNFRLADLIT
GFVDPNAEIEEHNVI-DESFSEESES--TDVEDNDEDE-SEAESTSDSSESDNSIDPEAREKFQQLKDQHTKTLAVIEK-----------HGRSGKRAQD
QIALLGEIFKQFRLVPKQFDLLVLSMKEMMKRVRHEERQLQKLVDIAGMPKDDFEKLIITNGSNTEWVQ-KALKSSKPWAKRLPKYEERILEALSNLASI
EENTKLTITQMRDICDAVARGEQKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQLLQEMGREATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLRVATHEV
LEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD
>tr|A2WDQ1|A2WDQ1_9BURK RNA polymerase sigma factor RpoD OS=Burkholderia dolosa AU0158 GN=rpoD PE=3 SV=1
------------------GTAEELEERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDETLLLNDNAP-AASSDD
EVEEEAEVA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVD
GLLDPNAADTDTAKEAEAIENEDEDAEEEE---EE-EEEEDDDGATANAAQLEALKRASLEKFALISEWFDKMRRAFEK-----------EGYKSKAYLK
AQETIQSELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHIVDKCGMPRSEFIARFPGNETDLDWAEKIAAE-GHPYSAVLSRNIPAIREQQQRLLDL
QARVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPETRSADHEDREGADL------DGNADRRRRRFPSRRLQHGRRAACKHARRREGRARF
ADAARGGAADAFR------HRDEHRSHARGSRQAVRRDA---------------------------
>tr|A0A0J7JRP0|A0A0J7JRP0_9BURK RNA polymerase sigma factor RpoD OS=Candidatus Burkholderia pumila GN=rpoD PE=3 SV=1
------------------GTVEEFEERRGKLRALIKLGRERGFLTYGEINDHLPDNFSETEAIEGIISTFNDMGVAVYEQAPDETLLLNDNAP-NASSDD
EVEEEAEVA---------L--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVMAISACPTTIADILAMAERVQNEEVRVDELVD
GLIDPNA--EDTEQETEAIESEDEESEDESDEEKE-EEEEEDDGSSANAAQLEALKLQSLEKFALVSEWFDKMRRAYEK-----------EGYKSKAYLK
AQEAIQTELMNIRFTARIVERLCDTLRAQVDEVRQVERQILHTVDKCGMPRAEFIARFPGSETDLEWSDKVVAE-GHEYSAVLERNIPAIREQQQRLLDL
QLRVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPIS----MEEDDDSHLGDFIEDTNTVAPSDAALHASMRDVVKDV
LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRER---------------------------
>tr|A0A099VVE7|A0A099VVE7_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter sp. MIT 05-5294 GN=rpoD PE=3 SV=1
---------------------------NQQLDELFQN--ETKYVSYEKIAQVLHKLPTAAQ-AKRVSELAKKYEKKLMSASEVA-KILNQARKIKKLLDE
ELED-----------EFDFMKERELLEWSRSDSPVRMYLREMGQIPLLTREDEVELSKNIELGENIILDAICSVPYLIDFILDYKEALINRERRVKELFK
SFDDDEENDREEE----SE-------EEE------NESENEEND-GEDSKKPISKKDKVLISFKALEKAKKDWLKTEQEKDN----ETCEDMLYLLTLAH
KKQLLKEKLLDLGPTSKLINELVKAMENTIKSDEGFEKELKRLDNIIEMNKADITAAV----PEATMV----------------STYMEIKKLFQTKAAS
EGSFDLEPEKLKQILEQIKRGKDIADKAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIMRKFLQEEGKEPDLEKIAESVGLPVDKVKNVIKITKEPISLEAPIGNGEDGKFGDFVEDKSSVGPMDHILKEDLKSQIDDV
LDQLNEREKAVIRMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A6Q2X9|A6Q2X9_NITSB RNA polymerase sigma factor RpoD OS=Nitratiruptor sp. (strain SB155-2) GN=rpoD PE=3 SV=1
---------------------------TKKLEEFFKEH-EKGYVTYEQLVDFFDRQPTLAQ-AKKILVLQKKYKVDIITSGEAA-KRLNIKEKKRKLSEE
ELAE-----------EFDLTKDKELLEWSRSDSPVRMYLREMGQIPLLTKEEEIELSKKIELGENIILDAICSVPYLIDFILDYKEPLINRERRVKELFK
SFEDEEEVEEDEH----L-----------------------------DKEAKKKAKYKIIELFKALEKAKKEWLKADKELP-----E-AQKFHHELVVAF
KKKQMKERLLELGPTSKLINELVKSMETALKSDEGFEKELKKLSEITHLSKEEIAARV----PEATMV----------------STYMDIKKLFQAKEAS
KKGFNLDPEQLAEILEQIKRGKKISEEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIVRKHLQETGKEPDVETIAEEVGMPVEKVKNVIKITKEPVSLEAPIGNEEDGKFGDFIEDKNAPNPLEVIMKEDMKSKIEEI
LENLNEREKAVVRMRFGLMPDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKIKNYIE-
>tr|Q7M846|Q7M846_WOLSU RNA polymerase sigma factor RpoD OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN
---------------------------TQELENLFKKS-EAKYVSYEKIVQTFPKPPTAAQ-AKKVHELSVKYDKMLLSASEVA-KLLNREKKIKKLLDE
ELED-----------EFDFMKERELLEWSRSDSPVRMYLREMGQIPLLTKDEEIELSKNIELGENIILDAICSVPYLIDFILDYKEALINRERRVKELFK
SFEDEEGGEEEED----EE-------V----------EEEADEE-GEESKKPISKKDKVLVSFKALEKAKKDWLKTEGGAAQ----EEEVELLHLLTLAY
KKQTLKERLLDLGPTSKLINELVKAMENTLRNDEGFDRELKRLENITEMSKNDIASAV----PEATMV----------------STYMEIKKLFQTKQAS
EESFDLEPEKLKEILEQIKRGKDIADKAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKYLQEEGKEPDVETISEEVGLPVDKVKNVIKITKEPISLEAPIGSDEDGKFGDFVEDKSSVGPMDHILKEDLKTQIDEV
LDQLNEREKAVIRMRFGLLEDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A066RQI4|A0A066RQI4_9GAMM Uncharacterized protein OS=Photobacterium halotolerans GN=EA58_19630 PE=4 SV=1
----------------------------------------MAPMNSKSIEDIFPS--------------VDIDDSGFVEEIES--------ID-------
-DDG-----------QREFLDAVKNTAENKHKDAASRYMLEAGRTKLLTKGQEIIISQQIEYTKNSSLAFVLLFKPALRLLKDEL-ERQNRQVNSHPKIS
CYSKKKNDEE----------------TENNEAIIE---------N--TVFF-KSLDPKTKEKILV---------KQ--KLKK----GEKKEAKA------
-YIENIIQLTKFNVDNDYIKQLIKAAKLISNKL-------SDCEREAKVKRETLINHYYATVDRGTLDSLE----------VPHLLKNRLTLLSQDLCDL
SEELEISPTLIEKIWGVTFSYSHKTTDSINKMCESNLLLVIHVAKKYKSPTLEFMDLVQEGNIGLQRAVEKFDYRMGNKFSTYATWWIRQAITRAINDQA
TQIRIPAHMQELIKKIDKFTKEYLAVNTTQPTEAEVAEHLNVGIDKVKLAISAKRDPISLHIAPSSNSNASLLSLIEEEGTVGPSTSYELAERRKVLLEL
LKNLPERDATIIMMRYGFEVPHEHTLEEAGKQFNVTRERIRQLEKKGCEKLSEVTKGEKLTDYL--
>tr|A0A078KBQ0|A0A078KBQ0_9GAMM RNA polymerase sigma factor OS=Candidatus Evansia muelleri GN=rpoD PE=3 SV=1
---------------------------PLFIYKFLVKAKNHGFLTYSEIYNVYKKSNEINY----LEFILEKKKVKIIENIND------NLLKK--NKK-
YIKN-----------TS--ENNVLNSENNLKINPIRLYMREIGNIKLLSYEDEIKIYNKREILKKKIMFIFSYWEYAINFICETYDNLKKEKKLINYIYL
-INNKDKINKNNN----NI-------KQYNQQLVK------------------IFFK---------------LLKERKNSLK----TTGNHVK------T
EQKFFTQIFMKIKLTHKYLYKLIYYIYN--------------CLNNCNISNNYFK---NNENNIKWLDNFISKNVEKDLKINRTYILESQN----KIKIE
ENLIKLSNINIKNIYKKIVFIEQLLFKNKNKIIEANLRLVIFIAKKYINRGLSFSDLIQEGNIGLIKAVDKFEYNLGYKFSTYATWWIRQSITRSIADNG
RTIRLPVHLIEIINKIKKVMHIIYQKTGKEATYKDLSKYLCISEDKIRKIIKLSKEPISLDFKVNENDKSTIGDLIPDNSQPTQLDFVKRNNLIVSINNA
LKDLTAREAKVICMRFGLNNNNIHTLEEIGKIFNVTRERIRQIEAKALQKLSDPLKYKILKSFLE-
>tr|A0A0N8WA21|A0A0N8WA21_9DELT Uncharacterized protein OS=Desulfuromonas sp. SDB GN=APR63_08485 PE=4 SV=1
---------------------------LDIAQKIEIVAAKENVISYQEMNNLIPETWNDEN----IIAFLKKQKITVINRKRKYT----K----------
------------------KLKLTKIASIRNFDDPTKLYMQELKNTKLMSRQDEIDVAKEKELAEREIAETIFATLPGIEALLDMDENIANA---VGDYLK
LFFP---PEE--------E-------KNPLFPLLK--------Q----EQMSKILEP--------------YITGE----PK----GKEDRL--------
----------HMKVVEKCVNNFTDTFDCFIE-VRK--------CKKVVMKLKKKITK-----------RLSKRN-----QEKIKIALEELSLLTRELKNL
EDKNMLTYPMLKSIYHSLSLSNARVNDAKKKMIEANVRLVISIARKHSYQGLDFLDLIQEGNVGLMRAVDKFDWRKGYKFSTYATWWIRQAISRAIADQG
RTVRVPVHMIEVMHKVSKEIATFRQKNGRDPSPEEISDSLEIPIEKIYAVFNVGQDTVSLDRPIGDSDDALFGDFIEDAKEDSPLQVAANVMLDERLKVV
LNTLTDRERKVLEYRFGLIDGCPKTLEEVGLIFGVTRERIRQIETKSLKKLRLKARSKQLEQFRE-
>tr|A0A0P8BJR0|A0A0P8BJR0_9RHIZ RNA polymerase primary sigma factor RpoD OS=Rhizobiales bacterium HL-109 GN=rpoD PE=4 SV=1
---------------------------DAAV-KKMIKTRKRGYVTYDELNDVLPSEEFSSE----IEGQLSELGINVVEAEEVEEQAE--GESEEGDLVA
ASTR-----------AVAAKPETTKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVEGRVLLRDIID
LEATYADPE-GDE----DA-------GAGAAVNGA-------A-GDMDSAMESELKP-VLETFDRIAD-NYKKLRRQVEHVE----QRK-----------
LKEEIVTDVKSLSLNQNRIDALVEQLYDINKRLL---------AESFGVGREDFLRNYQGYELDPKWLLRVSKLGGKGWKNFVADGKDQIHDLRDQIHTL
ASETGLEISEFRKIVHMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDSAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|E0TGQ1|E0TGQ1_PARBH RNA polymerase sigma factor RpoD OS=Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) GN=rpoD PE=3 SV=1
---------------------------LASV-KKMIDAKKRGYVTYDQLNAALPESEYTSE----IETKLSDMGINVTEDDEDGGGDA--DEEGQSAVVK
KES--------------ATVATNTKADSDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRESMIRALCESSLTFEAITVWREELEEGRVLLRDIID
LDATYDGGPESEV----A-------------------------QEIDESAKEAELRE-VMDTFSEIAE-DFKKLRRQDIQIE----QQR-----------
LQKDIVERVRSVRLHNHRIEALVEQLYEINRSLM---------ADSYGVNRQDFLTSYLGYELDPEWLDRVSAMDGRGWTQFTTKGRDQIVDLRENIGQL
AQETGLTVKDFRRIVQTVQKGEREARIAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQILNEIGREPTPEELAAKLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A086MJX5|A0A086MJX5_9RHIZ RNA polymerase sigma factor RpoD OS=Microvirga aerilata GN=rpoD PE=3 SV=1
---------------------------DAAV-KRMIKLKKRGYVTYDELNEVLPPEEFNSE----IEGQLSEMGINVVESEEAEEEK---PEAEESDLVE
ASTR-----------AVAVRETTAKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELVEGRVLLRDIID
LEATYAGPD-GAL----GE-------GGEAE---E---------PDMESAMEAELKP-VLETFDSIAD-NYKKLRRQVEHVE----QRK-----------
LKADIVASVKSLSLNNNRIEALVEQLYDINKRLI---------AESHGVAREEFLKHYQGWELDPKWVLRVSKLGGKGWKDFVAKAKDGIHDLRENIHNL
ASETGLEIQEFRRIVMMVQKGEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|J7QNP3|J7QNP3_METSZ RNA polymerase sigma factor RpoD OS=Methylocystis sp. (strain SC2) GN=rpoD PE=3 SV=1
---------------------------DAAV-KRMIKLKKRGFVTYAELNAVLPSEEVSSD----IEAMLSEMGITVSEGDDPDDEADE-QNPEEGELVE
SPAT-----------AVATR---TSEPADRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWREELEAGKVLLRDIID
LEATYAGPE-GP-----------------APA-AD--------DVDMESAMELELKP-VLETFARIAD-AYKKLRRQDQNVE----NKK-----------
LKKEIVADVKSLSLNQNRIEALVEQLYDINKRLI---------ADSHGVMREDFIDKFHGSELDPKWVMRVAKLGSKGWREFVAADKDRIKDLRTEIHAL
ATETGLEISEFRKIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIEAAIQSNLRETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|B2IDS6|B2IDS6_BEII9 RNA polymerase sigma factor RpoD OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpoD PE=3 SV
---------------------------DAAV-KRMIKVKKRGFVTYSELNAVLPSEEVNSE----IEAMLNEMGINVVESEEQDTESE--DSNEEGDLVE
ASSK-----------AVTTR---SSEPSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNDSKVLLRDIID
LEATYAGPE-GLD----AT-------DEEDPDDAP--------DPDMESAMEAELKP-VLETFDRVAD-AYKKLRRQDQNVE----NKK-----------
LKKEIVADVKSLSLNQNRIEALVEQLYDINKRLI---------AEGYGVAREDFLRNYQNSELDPKWLLRVSKLGSRGWKDFVAKAKDTIKDLLGEIHGL
ATETGLEIQEFRKIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|Q3SPU8|Q3SPU8_NITWN RNA polymerase sigma factor RpoD OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpoD PE=3 SV=1
---------------------------DAAV-KKMIKQKKRGFVTFDQLNEVLPSDTTSPE----IESMLSDMGINVSESEDADSDE---NKEATDELVE
VTKA--------------VTEVKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIID
LEATYAGPE-ALL----GA-------PGGPGGDGA--SGEGGAGADFDAAIEAELKP-VVETFDKIAD-SYKKLRRQEADIS----NQK-----------
LKDEIIVEVKSLRLNQARIDSLVEQLYDINKRLV---------GDSHGVAREDFLRNYQGSELDPRWLNRVSKLSAKGWKNFVHHEKDRIKELRGEIQQL
AALTGLEIGEFRKIVQGVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0Q7TTP8|A0A0Q7TTP8_9RHIZ RNA polymerase subunit sigma OS=Pseudolabrys sp. Root1462 GN=ASD45_01305 PE=4 SV=1
---------------------------DAAV-KKMIKAKKRGYVTYEQLNAVMPSEEVNSE----IEAMLSEMGINVVETEEADEGEKPAADDDTGEMVE
VKKA--------------LATVEKKEPSERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMISGLCESPLTFQAIIIWRDELAEGKVFLRDIID
LEATYAGPE-A------QT-------PVGPDGGAP--HLQVV-AEDMEAAIEAELKP-VVETFDNIAD-QFKKLRRQEQDIE----NRK-----------
LKDEIIGHVKSLRLNQARIDSLVEQLYSINKSLV---------AESYGVARDDFLKNYIGSELDPRWLNRISKLSAKGWKKFTADEKDKIKDIRSLVHDL
AAQTGVEIGEFRKIVQMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0F5FXT5|A0A0F5FXT5_9RHIZ RNA polymerase sigma factor RpoD OS=Devosia geojensis GN=rpoD PE=3 SV=1
---------------------------DAAV-KKLIKVKKRGYVTYEELNAVMPSEEVSSE----IESMFSDMGINVVDEDEVEEDS---DAGGEGDLAP
SGTA-------------VASKSNTREGSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIEGLCESPLTFQAIIIWRDQLANGEILLRDIID
LEATYAGPD-ADL----AT-------LIAPKSIEK--------PEDFESAMEAELKP-VVATFDRIAD-AYGKMREQDRYAE----DRD-----------
LRSDVIADVKSLSLNASRIESLVEQLYDINKRLV---------AESYGVKRDIFLESYYGNEVNPAWEASLATREGKGWAEFARREADTIAELRGDIATL
ATETGLNIAEYRRIVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIQDVNAIQPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0K0TXK4|A0A0K0TXK4_9RHIZ RNA polymerase sigma factor RpoD OS=Devosia sp. H5989 GN=RpoD PE=3 SV=1
---------------------------DAAV-KKLIKVKKRGYVTYEEVNSVLPSEEVTSE----IEAMFSDMGINVVDEDEVEEEP---DSD-ESEVAE
RTTA-------------VASKSNTREGSDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDQLAQGEILLRDIID
LEATYAGPD-AQA----EV-------EKAPAAEAK--------PQDFESAMEAELKP-VVETFDRIAE-AYGKMRLQDQHAE----DRD-----------
LRGEVIADVKSLSLNASRIESLVEQLYDINKRLV---------AESYGIKRDEFLQAYYGSEVDPTWTEAVGGRDGKGWAEFIRRELDTVNEIRGEISTL
ATETGLDITEYRRIVHKVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELSEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSNLGDFIPDVNAIQPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A0M6Z0D9|A0A0M6Z0D9_9RHOB RNA polymerase sigma factor RpoD OS=Labrenzia alba GN=sigA PE=3 SV=1
---------------------------DAAV-KKMIKAKKRGYVTYDELNEVLPSEQVSSE----IESMLSDMGINVIDSEEADDG-------PDGEIVA
AKS-------------AVAKTTTTKEPADRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEAQVLLRDIID
LEATYAGPD-AND----DV-------APGEGSQST-------DEQEFESAMEAELKP-VLETFDNIAD-NYKKLRRQDQLVE----NKK-----------
LKEDIVVDVKSLSLNQNRIDALVAQLYDINKRLM---------ADSYNVDRTDFLKQYQGAELDPNWLRKVANLSTRGWKNFIAKEKENVRELRHEIQTL
ATETGLEITEFRRIVAMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|F7NKY8|F7NKY8_9FIRM RNA polymerase sigma factor SigA OS=Acetonema longum DSM 6540 GN=sigA PE=3 SV=1
---------------------------TEHVNELLHKGKRGGVLTYSEIMDTFQGEDLSPD----IDEMFTTKGIEIVDEVPDMENIEGP------DIA-
EISA-----------PEEVDLDLSIPEGISIDDPVRMYLKEIGRVSLLTAVDEIKLAKRMGKGNEARRLANERSAGDTEYLLEFLT----RRGKAKEVRN
YYRLAQLEEDELE-------------TAGVKVIGCHFAELTQE-NEQ-SFVKHYLAQSLRDSSKVFRSLVGFITKSG----K----PTQKNMR-----EL
TQEEVKSLMKVLAAEKLEVPELGRTWDTGSNE-SLLDQAVTTAVKRAQLTPKGFSAVTEGLDQAGV--EILDGS----YLSLIQRMLAECHILCARCDAV
APEVAGEIDEYISRLDVLHKYIEQGEMAKRSLSEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMVETINKLIRVSRQLLQELGREPVPEEIARAMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEV
LETLTPREEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDFLE-
>tr|J6J0C4|J6J0C4_9RHOB RNA polymerase sigma factor RpoD OS=Rhodovulum sp. PH10 GN=rpoD PE=3 SV=1
---------------------------DAAV-RKMIRLKKRGYVTHDQINAVLPSEEVTSD----IEAMLNEMGINVVEQEEHGEEAGE-DAHDSDELIE
VTAT-----------PA---KTERSEPGERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNAGKVFLRDIID
LEATYAGPE-SGA----SE-------DGETDAPVE-------AGEDMEAAIEAELKP-VLETFDIVAD-TYKKLRRQDQNVE----SKK-----------
LKEELIAEVKSLRLNQARIDSLVEQLYDINKRLV---------AESHAVQREDFLRNYLGSELDPRWLNRVSKLSARGWKNFVAREKDLIKEIRGDIQAL
AAETGLEILEFRRIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|A0A081BF71|A0A081BF71_9RHIZ RNA polymerase sigma factor RpoD OS=Tepidicaulis marinus GN=rpoD PE=3 SV=1
---------------------------DAGV-KKMIKAKARGWVTYDELNKVLPSEEFSSE----IEAMLSEMGITVVENDETEDSEEASE--DEGV--P
AKAS-----------SAVTKSESTSTTLERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNDGKILLRDIID
LDATYAGPD-AAA----LE-------REKA----K--------QYDNEAAMEAELKP-VLETFDAIAS-NYKKLRKQDQKHE----LVK-----------
LRDEIVEEVKSLSLNNNRIDSLVEQLYAINKRLM---------AESHGVKREEFLAQYYGNEMDPNWVERVAKLKAKGWSSVAKEEKDTLETLRAEIQEL
VQETGLDIGEYRRIVHTVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIHSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|E3I734|E3I734_RHOVT RNA polymerase sigma factor RpoD OS=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) GN=rpoD PE=3 
---------------------------DAAV-KRLIKTKARGYVTYDEINEVMPPEDVSPD----IETMFSDLGINVVDAEEVEESAEHLE--E------
-APA-----------NLPVKQERSTEVGERTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIGGLCESPLTFQAIIIWRDELNEGKILLRDIID
LEATYSGPF-SSE----EE-------YD-PEPPRP--VVTNGGGEDLEAAMEAELKP-VLETFDRIAT-EYKKLRKQDQHVE----RKR-----------
LRDAVIQDVKSLSLNPARIESLVEQLYDINKRLI---------ADGFGVRRDEFLSYYQGSELDPNWIDRIGTLKGKGWQKFVEKERQRIDEIRQEIYAL
ATETGLDIAEFRRIVKIVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRTSRQMMHEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD-
>tr|W6TTV4|W6TTV4_HOLOB RNA polymerase sigma factor RpoD OS=Holospora obtusa F1 GN=rpoD PE=3 SV=1
---------------------------CYLLQALLVKSKEQGFLSQKYLNK--------------AKQLLKDAGVGITLEDVLLS-------------E-
QLLS-----------PLE-EAKEDEIDLPGMDDPVRLYLKEIGSVPLLSRTGEVAIAQRIEAGRNMVVSGLCSSPILFPVLDQWIK----G---LRYLVD
LEQNVDEALTEPE----KE-------KKDALEGGEKDALLEVDPSEETSESEEKLDE------DVLIEKDDFLDNESHL-LE----GTREKIQTGIENET
ALKEIVEIFSSLRLQTGRIKDLTALVLDL--------------CEAHGISVKDFLASYTSDNPWQWWSKLQEKAPSDKWKAVLSKGKEDIQKILSEIEVI
STKSGVPLARLRQIIKTVQTGEHDAEQAKKEMIEANLRLVISIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSVADQA
RTIRIPVHMIETINKMLKISRAFVHETGREPSPEDLAKRMGYSLAKIQKILKISKEPISLETPVGDEEDSHIGDFLKDETAISPINAAVMNDLRDALSEA
LSLLTAREERVLRLRFGIGGNEERTLEDVGKSFDVTRERIRQIEAKALRKLRHPSRSKSLIHFLD-
>tr|A0A061JIC8|A0A061JIC8_9RICK RNA polymerase sigma factor RpoD OS=Holospora undulata HU1 GN=rpoD PE=3 SV=1
---------------------------CYLLQALLVKSKEQGFLSQKYLNK--------------AKQLLKDAGIGITLEDTLLS-------------E-
QLLS-----------PLE-DSKEEEIELPGMDDPVRLYLKEIGSVPLLSRTGEVAIAQRIEAGKNMVVSGLCSSPILFSVLDQWIK----G---LRYLVD
LENNVDEALTEAE----KE-------KKEKDGLLEKESLLEKKSPEDAAEAEEKLDE------DVLIEKDDLWVNESHL-LE----GTRDKIQAGIENEA
SLKEIIEIFSSLRLQSGRIKDLIELVLDL--------------CEANGVSVKDFLASYNGEAPRQWWLYLKEKAPSDKWKAVITKGKDEIEKILSDIDAI
TIRSGVPLARLRQIIKTVQTGEHDAEQAKKEMIEANLRLVISIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSVADQA
RTIRIPVHMIETINKMLKISRAFVHETGREPSPEDLAERMGYSLAKIQKILKISKEPISLETPVGDEEDSHIGDFLKDETAISPINAAVMNDLRDALSEA
LSLLTAREERVLRLRFGIGGNEERTLEDVGKSFDVTRERIRQIEAKALRKLRHPSRSKSLIHFLD-
>tr|F8LAQ8|F8LAQ8_9CHLA RNA polymerase sigma factor SigA OS=Waddlia chondrophila 2032/99 GN=rpoD PE=3 SV=1
---------------------------QQKIDELVAIAKDQGFITYEEINDVLPMTIDTAD----IDIFLSGMDVQILNQSEVER-K-EK----------
--KK-----------EAKELEGLPRRVEGTPDDPVRMYLKEMGSVPLLTREEEVEISKRIEKAQHQIERIIMRFRNSSRETIAICSALINNKERFDKCIT
EKE---IENK-----------------TEFLKDDQ-------------------ENP-------------LT--------KA----ERLEEI------EK
ARIRTQAYLRRLHLRHNIIDDFGEVIMESYDRFLQLEEEILEL--RNKY------------------------------------AGLKLAAAKRKLKKK
ELAAGRSLEEYKKDVRMLQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQA
RTIRIPVHMIETINKVLRGAKKLMMETGREPTPEELANELGLSAERIREIYKIAQHPISLQAEVGDGGESQFGDFLEDTGADSPAEATGYSILKDKMNEV
LLTLTDRERKVLIQRFGLNDGKPKTLEEVGVEFNVTRERIRQIEAKALRKMRHPTRSKQLKAFLD-
>tr|A0A090D2E8|A0A090D2E8_9CHLA RNA polymerase sigma factor SigA OS=Criblamydia sequanensis GN=rpoD PE=3 SV=1
---------------------------QQKVDELVSLAKEQGYITYEEINEILPMSFDSPE----IDIFLSGMDIQILNQTEVDR-K-EK----------
--KK-----------EAKEMEGLPKRMEGAPDDPVRMYLKEMGSVPLLSREEEVEISKRIEKAQQQIERIIMRFRYSNSEAISIASYLLAGKERYDKCVA
EKE---VENK-----------------QEYLLEDA-------------------YEK-------------LK--------KS----DQLEEI------EK
CRIRTQAYLRLLHLRPNIIEDFGEVIMNSYDRFLELEKEIQEL--RNKF------------------------------------ALQKLEAAERKLRKK
ELAAGRTLDEFKKDVRMLLRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQA
RTIRIPVHMIETINKVLRGAKKLMMETGREPSPEELALELGITPERVREIYKIAQHPISLQAEVGDGGESQFGDFLEDTGADSPAEATGYSILKDKMNEV
LETLTDREKKVLIQRFGLLDGKPKTLEEVGVEFNVTRERIRQIEAKALRKMRHPTRSKQLKAFLD-
>tr|A0A078L3M5|A0A078L3M5_9CHLA RNA polymerase sigma factor SigA OS=Chlamydia sp. 'Rubis' GN=sigA PE=3 SV=1
---------------------------QQKVDELISIAKEQGYITYEEINEILPMTFDSAD----IDIYLSGMDIQILNQSEVER-K-EK----------
--KK-----------EAKELEGIQKRSEGTPDDPVRMYLKEMGSVPLLSREEEVEISKRIEKAQIQIEKIILRFRYCNSETISIANYLMNNKERFDKSVA
EKE---VLNK-----------------QEYLNEDR-------------------NQS-------------LK--------KN----DQADDI------EK
CRIRTQAYLRRFHLRHNIIEDFGELILRAYERFLELEKEIQEL--RNKY------------------------------------AASKLAAASRKLKKR
ELAAGRTLDEFKKDVRMLQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQA
RTIRIPVHMIETINKVLRGAKKLMMETGREPTPEELALELGISAERVREIYKIAQHPISLQAEVGDGGESQFGDFLEDTAADSPAEATGYSILKDKMNEV
LSTLTDREREVLKQRFGLVDGKPKTLEEVGVQFNVTRERIRQIEAKALRKMRHPTRSKQLKAFLD-
>tr|Q6MEU8|Q6MEU8_PARUW RNA polymerase sigma factor SigA OS=Protochlamydia amoebophila (strain UWE25) GN=sigA PE=3 SV=1
---------------------------QQKIDELVAISKDQGFITYEEINEILPMSFDSAD----IDIFLSGMDIQVLNQSEVDR-K-ER----------
--KK-----------EAKELESMPKRSEGSPDDPVRMYLKEMGSVPLLSREEEVEISKRIEKAQVQIERIILRFRYATSEAIAIANYLLTGKERFDKSIT
EKE---VVNK-----------------QEFMNEDL-------------------NDP-------------IK--------KN----DRIEDI------EK
CRIRMQAYLRRLHLRHNIIDDFVEVILRAYDRFLFLEKEIQEL--RNKF------------------------------------AGAKLAAAQRKLNKR
ELAAGRSLDDFKKDVKMLQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQA
RTIRIPVHMIETINKVLRGAKKLMMETGREPSPEELAKELGITAERVREIYKIAQHPISLQAEVGDGGESQFGDFLEDTGADSPAEATGYSILKDKMGEV
LSTLSDRERKVLIQRFGLLDGKPKTLEEVGVEFNVTRERIRQIEAKALRKMRHPIRSKQLKAFLD-
>tr|A0A0M2UR69|A0A0M2UR69_9BACT RNA polymerase sigma factor SigA OS=Candidatus Brocadia fulgida GN=sigA PE=3 SV=1
--------------------------------QLVQKGKEKGYLTYEELNDILPDDADISP----IDM-LDELGIDLIDETEIESDIVETEG------EP
Y--------------EVDLEFGEVPTITEKIDDPVRMYLTQMGEIPLLTRDEEIMLAKKIEITRKRFLKKVMHSDLSLTTCLRILEDVNNGELSFDRTLK
VNA--------VD----NC-------KDEILEQFP-------------------LQK----------KEDYLRAKRKQISKK----EKRN----------
RRRKGIDLLEEINIRTKRIQPMMKKLQEIIFEMEILEDQMSES----TR------------------------------------SNGHYKELESQFAKL
EELVLESSRSLKRRVDSVECIYREHEAAKRKLSGANLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETMSKIRNVSKKLLQEKGREPTIEEISREVKITVGEARRVLKISRHQISLDRPVGESEDSSFGDFIEDEKAESPVSAATQEMLKDKIESV
LETLTYREREIIKLRYGIGDGYTYTLEEVGKIFKVTRERVRQIEAKAVRKLQHPIRSRKLEGFLD-
>tr|A0A0F9KSF3|A0A0F9KSF3_9ZZZZ Uncharacterized protein OS=marine sediment metagenome GN=LCGC14_1666610 PE=3 SV=1
--------------------------------TLVQRGKEKGFLTYEELNDILPDDTLMQP----IDM-LDESGIDLIEETEIETDMVETKG------EP
H--------------RVEGRFDEVETITEKIDDPVRMYLTQMGEIPLLTREEEIALAKKIETTRKGFLRKILKSDFSQKACLKILEDITSGELPFDRTLA
INV--------LE----NH-------KERLLKQFP-------------------LKK----------KEDYHKLKLRKTTVK----DRRS----------
RQRKGAAILEELNIRTKKLQPIVKGLQEISFEMNNIERQIKLQ----NR------------------------------------GNGRLRVLKSRLSEC
KNLAHESPEKLRQHVQSIGNIYKIHEFAKRELSSANLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETMSKIRNVSKKLLQEKGREPNIDEIARDVKISVSEARRVLKISRHQISLDRTVGESDDSAFGDFIEDDKAESPVSAAAQEMLKEKIESV
LDTLTYREREIVKLRYGIGDGYTYTLEEVGKKFMVTRERVRQIEAKAVRKLQHPVRSRRLEGFLD-
>tr|D5SND9|D5SND9_PLAL2 RNA polymerase sigma factor SigA OS=Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=sigA PE=3 SV=1
--------------------------------ELIVRGKKQGFLTYSQINDYLPDEA-MNP----LDS-IWEEGLKIVTDDQVGMVEEKKPRT-------
---R-----------AKNGKEVVVEEKSKKIDDPVRMYLTQMGEIPLLTREKEISLAKTIEVTRNQFREELLECDYALKMAFDTLSKVNSGELPFDRTIK
VSV--------ES----KE-------KNQILGRMP-------------------RKQ----------IGDFEKSIDANASSD----ERKK----------
RRRKMVKLIEELSLRTQRLQPTMKRLEQISRRMCDLQRQIDSL-----L-------------------K---------------SARDERANIHKELHDL
MMMTLETPEGLRQRVERVRERFAKYEQAMRDLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETMSKLRKVAKKLLQEMGREPTLEETAEAAGVSLEETRRVMKISRHPISLDRPVGESEDSYFGDFIEDDNTESPVMAATQEMLKDKIDNV
LKTLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKGFLD-
>tr|Q1PW65|Q1PW65_9BACT RNA polymerase sigma factor SigA OS=Candidatus Kuenenia stuttgartiensis GN=rpoD PE=3 SV=1
--------------------------------LLTQKGKEKGYLTYEELNDMLPDDAEIPP----IDM-LDELGIDLIDEADIEGEVVDSEA------EH
Y--------------ESEFGFGEVSTVTEKIDDPVRMYLTQMGEIPLLTRDEEIMLAKKIEITRRGFLKKVLHSDLSLQTCLKIVEDVNNGELSFDRTLK
VDA--------VE----NY-------KDDILEEFP-------------------IQK----------KEDYQRLKRKQTPEK----EKRN----------
RRRKGIRRLEEINIRTKRIQPMMKRLQEIALEMEQLEQQIGEK----SK------------------------------------ANNHYKELEEQYLAL
ENTVLETGERLKRRLLSIESIYKEHESAKRKLSGANLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETMSKIRNISKKLLQDKGREPTIEEIAREVKISVPEARRVLKISRHQISLDRPVGESEDSSFGDFIEDEKAESPVAAATQEMLKDKIESV
LETLTYREREIIKLRYGIGDGYTYTLEEVGKIFKVTRERVRQIEAKAVRKLQHPIRSRKLEGFLD-
>tr|L0DAT7|L0DAT7_SINAD RNA polymerase sigma factor SigA OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=sigA P
--------------------------------TLLDLGKRRGFLTFDQVNDYLPDEA-SSP----IHS-LDEMGIELINEDEAESLQASGSDDP--VDEP
V-DD-----------DGELTPEDLDEISRRIDDPVRMYLTQMGEIPLLTRDQEINLAKKIEITRKRFRRKVLECHFALALVVDVLKKVNEGDLPFDRTVK
VSV--------EN----LE-------KDQILGRMP-------------------MEC----------NRDFRSFIRERDKS-----ARVS----------
RRRKAVNLVEELSIRTQKVQPLMKRLEQVAARMGELVVQLQDY-----G-------------------R---------------GGKEDRSNLQKELKDL
MRITLETPKSLRNRVEAMNSRFKEYEQAKRELSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETMSKLRNVSKKLLQEKGREPTIEETAKAANISIEETRRVMKISRHPISLDRPVGESEDSYFGDFIEDEAAESPINAATQEMLKEKIDQV
LKTLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFLE-
>tr|S7J3G4|S7J3G4_CHLPS RNA polymerase sigma factor SigA OS=Chlamydia psittaci 10_1398_11 GN=sigA PE=3 SV=1
---------------------------QKKLEELVALAKDQGFITYEEINDILPMSFDTPE----IDIFLTGMDIQVLNQADVER-K-ER----------
--KK-----------EAKELEGLAKRTEGTPDDPVRMYLKEMGTVPLLTREEEVEISKRIEKAQVQIERIILRFRYSTKEAISIAQYLINGKERFDKIIS
EKE---VEDK-----------------THFLKEDT-------------------KQP-------------LS--------KT----EINDDL------EK
CRIRTQAYLRCFHCRHNVTEDFGEVVFKAYDSFLQLEQQINDL--RNKF------------------------------------AAAKLDAAKRKLYKR
EVAAGRTLEEFKKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQA
RTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPERVREIYKIAQHPISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKDKMKEV
LKTLTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPTRSKQLRAFLD-
>tr|F8L4H4|F8L4H4_SIMNZ RNA polymerase sigma factor SigA OS=Simkania negevensis (strain ATCC VR-1471 / Z) GN=rpoD PE=3 SV=1
---------------------------QQKIEELVAIAKEQGYITYEEINEILPMNFDSAE----IDIFLSGMDIQILNQSEVER-K-ER----------
--KK-----------EAKEMEALPKRMEGSSDDPVRMYLKEMGSVPLLSREEEVEISKRIEKAQIQIEKIIMRFRYSTREAISIAHYLITGKERFDKIIA
EKE---IEDK-----------------NSFLKEDH-------------------QSK-------------LG--------KV----ERSEDI------EK
CNIRTQAYLRRMHFRHNITEDFGEVILTSYDRFLALEKEIQEL--KNRF------------------------------------AKAKLLAAERKLTKR
ELAAGRTIDKFKKDVRMLQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQA
RTIRIPVHMIETINKVLRGAKKLMMETGREPTPEELATELGLTPERVREIYKIAQHPISLQAEVGDSGESQFGDFLEDTTIESPDEATGYSILKDKMNEV
LSTLTDRERTVLIERFGLLDGKPKTLEEVGVRFKVTRERVRQIEAKALRKMRHPTRSKQLQAFLD-
>tr|A0A0C1HDR6|A0A0C1HDR6_9CHLA RNA polymerase sigma factor SigA OS=Neochlamydia sp. EPS4 GN=rpoD PE=3 SV=1
---------------------------QQKVDELVSIAKEQGYITYEEINDILPMSFDSPE----IDIFLSGMDVQILNQSEVER-K-ER----------
--KK-----------EAKELEGLPKRSEGTPDDPVRMYLKEMGSVPLLSREEEVEISKRIEKAQIQIERIIMRFGYSTAETIAIAQYLLQGKERFDKCVA
EKE---VPNK-----------------QEFLNEEQ-------------------DDP-------------LN--------KE----NKLEEV------EK
CRIRTQAYLRRFHVRHNIIEDFGELILRAYDRFLQLEKEIQEL--RNKF------------------------------------AAAKLASAKRKLKKR
EIAAGRTLEEFKKDVRMLQRWMDKSQEAKREMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQA
RTIRIPVHMIETINKVLRGAKKLMMETGREPNPEELAVELGITAERVREIYKIAQHPISLQAEVGDGGESQFGDFLEDTAADSPAEATGYSILKDKMNEV
LSTLTDRERKVLIQRFGLLDGKPKTLEEVGIEFNVTRERIRQIEAKALRKMRHPTRSKQLKAFLD-
>tr|D5SSI9|D5SSI9_PLAL2 RNA polymerase sigma factor OS=Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_0893 PE=3 SV=1
---------------------------QLALRELLNQGASRGFLTYAEIDRYIPDEG-GDP----VDA-LEAAGLDAVEPE-GGIPLQ------------
---------------SLPPLEMLEPESNSSSRDPIRMYLSQMGHIPLLTREREIYLAKQIEMTRRWFRRRMLESDFAIRIVVDTVHKVRLGELPFERTLR
TSD--------ES----VQ-------KDQILARMP-------------------LDE----------KQDFTLLRA-AIGTP----EEEI----------
RRSKLATLCEELSVRTQRLQPVMRRMEQISLRMTELQKQISAR----KM-------------------P---------------MTAADVAAAEAELEGL
IQDVQELPADFQKRIRRVLEKFGGWTRSKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEFRRGYKFSTYATWWIRQAITRAVADHA
RTIRIPVHMFQSISTLKNKSEQIRQETGREPTIEELALAVDMSVEDTERIMKTWKHPMSLDTPIGESEDSSFGDFLEDSHESTPADNALREMLRDKIDIV
LRSLTYREREIIRLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALKKLQHHTRAHHLQGFVE-
>tr|F0SNE9|F0SNE9_RUBBR RNA polymerase sigma factor SigA OS=Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1
---------------------------SESIQPLMKSALKAGRLSYQSMDEFLPDEG-GDP----IDA-LDQLEIDMYDDPSGRIKIPEKGLPN--EEED
A-SE-----------DDAVPAVVGPETPVSSRDPIRMYLSQMGNIPLLTRADEIYLAKQIEVTRKRFRRTAMESDFTLAIVVDMFEKVNTGELPFERTLR
TSE--------EN----AQ-------KEQILGRME-------------------MDL----------RIDFEIRLSEEVSKE----DRQI----------
RRRKMASLAEELSLRTQRLQPIIKRMDQLAERFSQLIRDI--K----RI-------------------P---------------SAAADVQLMQDELNEL
VQDTLELPEEFIARTREIKRRFGFWTEAKQKLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKFSTYATWWIRQAITRAVADHA
RTIRIPVHMFQSISTLKAKAEQIRQETGREPTMEELAAAIDMSVEETERIMKTWKHPVSLDTPVGESEDSSFGDFLQDDSENTPADTAMQQMLRDKINHV
LKSLTYREREIIKLRYGLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQTRSNHLKGFVD-
>tr|Q3A143|Q3A143_PELCD RNA polymerase sigma factor RpoD OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpoD PE=3 SV=1
-----------------------------EVQQLIDMGKEKGYLTYDEVNDYLPESVVSSD----LDSLFGEMDIEVVDSEQKVSVSKTQSDSD--DSS-
SDGE-----------EEE-ETEYEAGTLGRTSDPVRMYLREMGQVSLLTREGEVEIAKRIEEGEALVARVIMKTPIAFREVIRLGE----K---VAEITK
EYEEEEGADV-EE----VQ-------RTRILDQND---------------------------------------------RQ----QRRDQIA-----EK
KA-SIGELMREIRLKDFQVDKIVDRLKDMAQQVKKGLSEVQACSQDLGVPIDTLL-------------SV------------EKRLKSAQR----KFNRV
EDESGFAPEELLGSLKEVMKGEWRAKAAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEMGREPVPEEIAERMELPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKGVVSPLEAVIKGNLSDQTSRV
LASLTPREEKVLRMRFGIGEKSDHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRARRLKSFVE-
>tr|Q1K285|Q1K285_DESAC RNA polymerase sigma factor RpoD OS=Desulfuromonas acetoxidans DSM 684 GN=rpoD PE=3 SV=1
-----------------------------EFQQLIETGKEKGYLTYDEVNDALPEDMVSST----LETMFGELDIEIVDNETKEEKSKGDSNDD--E---
--DS-----------KEE-GNNFEAGVIGRTSDPVRMYLREMGQVSLLTREGEVEIAKRIEEGEGLITQVVLKTPIALQEVITLGD----Q---ITDITK
DYDEEEGAEA-EE----KQ-------YERILGKND---------------------------------------------EA----QKQKRIA-----TL
KD-ELCDLMRQIRLKEQTVSKIAQRLKELSAQVKKALSEVTACVEELGKSADELQ-------------VA------------EKRLKGAQR----KFKRV
EEETGFSPEELVDSLKEVHRGEWRAKAAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQELGREPIPEEIAERMDLPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKGAVSPLEAVIKGNLSDQTAEV
LSTLSPREEKVLRMRFGIGERSDHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRAKRLRSFVD-
>tr|A0A0C2HG93|A0A0C2HG93_9DELT RNA polymerase sigma factor RpoD OS=Geoalkalibacter ferrihydriticus DSM 17813 GN=rpoD PE=3 SV=1
-----------------------------EVQQLIDLGREKGFLTYDEVNDLLPADMVSSD----IDSMFGELDIEIVDADQKIALPKERGLED--DDS-
E--S-----------AEE-EEPDLEAELGRTSDPVRMYLREMGQVSLLTREGEVEIAKRIEEGEALVTKVILRTPIAFKEVITLGE----R---VAEITK
EYEEEEGSEQ-EE----KQ-------VHRVLEMDT---------------------------------------------RE----EKEQAAR-----KV
KN-EIFELLRQIRLKDHQVAKIVDRLKGLAAQVKKGMVEVAACSSELAVPMDTLL-------------AV------------EKRLKGAQR----KFKKV
EEESGFAPEELLEALKDVQKGEFRAKLAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEMGREPIPEEIAERMELPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKAVVSPVEAVIKGNLSDQTSRV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRSKRLKSFVE-
>tr|A0A0M4D3S9|A0A0M4D3S9_9DELT RNA polymerase sigma factor RpoD OS=Desulfuromonas sp. WTL GN=rpoD PE=3 SV=1
-----------------------------EVQQLIDLGKEKGYLTYDEVNDILPADMVSSD----LDSMFGEMDIEVVDSEAKISLGKDQALDE--EGS-
EDE-------------EE-ETEFEAGVLGRTSDPVRMYLREMGQVSLLTREGEVVIAKRIEEGDALVTSVIMKTPIAFKEIISLGE----R---VAEITK
EYEEEEGSEA-EE----KH-------HQRILERDV---------------------------------------------KE----EKDKECK-----VL
KG-EIAELMRKIRLKDFQVAKIVDHLKELAKQVKKGMAEVHACSEELGVPMDTLL-------------AV------------EKRLKSAQR----KFKRV
EEESGFAPEELLESLKEVLKGEWRAKLAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQELGREPIPEEIAERMELPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKGVISPLEAVIKGNLADQTSRV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRAKRLKSFVE-
>tr|A0A0B5FPZ9|A0A0B5FPZ9_9DELT RNA polymerase sigma factor RpoD OS=Geoalkalibacter subterraneus GN=rpoD PE=3 SV=1
-----------------------------EVQQLIDLGREKGFLTYDEVNDLLPADMVSSE----IDSMFGELDIEIVDSEQKIALPKDRGLED--EEE-
ESGS-----------SEE-SEPDLEAELGRTSDPVRMYLREMGQVSLLTREGEVEIAKRIEEGEALVTRVILRTPIAFKDVISLGE----R---VAEITK
EYEEEEGSEQ-EE----KQ-------RDRILELDD---------------------------------------------AQ----EREARAS-----RL
KA-DVVELLKQIRLKDHQVGKIVDRLKQLASQVKKGMAEVNTCAAEIGVDIGTLL-------------SV------------EKRLKAALR----KFQKV
EEESGFMPEELLEALKDVQKGEFRAKMAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRQLVQEMGREPTPEEIAERMDLPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKAVVSPVEAVIKGNLSDQTARV
LSTLTPREEKVLRMRFGIGEKSDHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRSKRLKSFVE-
>tr|A0A0C2D5R6|A0A0C2D5R6_9DELT RNA polymerase sigma factor RpoD OS=Enhygromyxa salina GN=rpoD PE=3 SV=1
---------------------------EKIKKAVVAFGKKKGHVTVDELRELLPPDVVNHE----LGKQLEAAGVNIVDAEPPAKKTKARAR--------
-------------------RRDKEESETARTNDPVRMYLRKMGSVSLLTREGEVEIAKRIEQGEMQVLSIVLRSPVAVPYVQEMFD----Q---IKDVVQ
IATPNDGPNQ-QE----AA-------FENMTKHQK--------E-------------------------------------R----GKEQQID-----DH
HA-GIAEDIREMFLARRPIDGMVEELNGIVDRLQKSTADLAMCCRRLGLHPSELH-------------EI------------EARMKIADK----RIKQV
VEETGITSSELFELHTELTTARRQADRAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRSLVQELGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKNAVSPSEVVININLADQTRRV
LATLTPREEKVLRMRFGIGETSDHTLEEVGQDFSVTRERIRQIEAKALRKLRHPSRSKRLKAFVE-
>tr|A6GG53|A6GG53_9DELT RNA polymerase sigma factor RpoD OS=Plesiocystis pacifica SIR-1 GN=rpoD PE=3 SV=1
---------------------------DKIKQAIVAFGKKKGHMTVAELRELLPPDVIDHG----LDSMLESEGVKVLAKSLEKSPKRKART--------
-------------------RKAKDESDTSRTNDPVRMYLRKMGSVSLLTREGEVEIAKRIEQGELQVFEIVLASPVAVPYVQDMFD----K---IKDVVT
IATPNDGPQP-QD----AA-------FENMQKHHK--------E-------------------------------------R----GKEQQVD-----DH
QI-AIVDAIREMYLSRRPVDGMVDELNSIVERVQRATQDLTTCCRRLGLHPSELH-------------EI------------EARMKLATK----RIRQV
EQETGMDAPDLIELHTRLMKARRQADRAKAELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRSLVQELGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKNAVSPAEVVININLADQTRRV
LATLTPREEKVLRMRFGIGETSDHTLEEVGQDFSVTRERIRQIEAKALRKLRHPSRSKRLKAFVE-
>tr|B3CQ43|B3CQ43_ORITI RNA polymerase sigma factor RpoD OS=Orientia tsutsugamushi (strain Ikeda) GN=rpoD PE=3 SV=1
---------------------------RNKNNKIIICNKTKKNTNVEELAS----NFVDES----ISNLDKDFDYTKLGVCP-------DKIEE--EEV-
VLSN-----------ATEGEFEEDLDDNIYSTDIVRAYLKDMSNTTLLSREGEIELAKQMEEGKKTVIHFICHLPYVMKLLIQWYEDLVHSRILVRNLIE
LESNIYDQPEDSD----GD-------CEELQNMQV----------------AH----------------DFKLHKSSC--NY----QET---------EL
SK-ELIAAVSNIHFNKQSIKNILNKLYSVNK------------AEKYKISRHDFLFQYNSGSNWL---QKVKLLHQDEWNKFLSKEKDLIKSTIDYFSEI
EQAMLLPLKRFKEIIQAIQNGERKVRVAKKKMVESNTRLVVHVAKPYVNRGLPFLDLIQEGNIGLMKAVDKYNYLLGYKFSTCATWWVRQSISRAVADQA
RTIRIPVHMADTISKIVRVSKQMHNELGYEPTASEIAEKLSMPIDKVKKVMRIAKEPVSLENPIGEEDGSCLSDFIEDKNAILPIEEAIKFSLRETTTRA
LSTLTAREERVLRLRFGIGLPTDYTLEEVGGEFKVTRERVRQIEAKALRKLKHPVRSKKLKSFLS-
>tr|S3XS04|S3XS04_9PROT RNA polymerase sigma factor RpoD OS=Campylobacter ureolyticus ACS-301-V-Sch3b GN=rpoD PE=3 SV=1
---------------------------LEEVEELFKEN-EKGYATYEKLIKLFDKSPTQAN-TKKIESLAKKYKVTLKTSAEVA-EIKNIAKKKAKYIEE
NLDE-----------EFDITNETELLEWGRSENPVRMYLREMGQISLLTKEEEIEISKQIELGEDIIIDAFCSVPYLIDFILDYKVPLINRERRVKELFK
NFDEDNSEEDDDI----ED-------EDFE------------EN-EEDKNSNREKRNRVTESFKALEKAKKDWLKYEKNE-D----I-RDMLYAKLSLTF
KKKILKEKLMDLGPTSKLINEIVKQMETALKSDDHFDKELKRLKDITKLSKDEITERV----PEATMV----------------STYVDIKKLFQTKEAS
KDSFDMDPKRLEVILEQIKRGKNISDKAKGKMARSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKINRKYIQEEGKEADINVIAEEIGMSIDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDKSSPSPIDNVLNDDLKEQIDAV
LEQLNERERTVIRMRFGLLDDSDRTLEEIGKALNITRERVRQIESSVIKKLKHPKIGRELKNYIE-
>tr|F2AWB6|F2AWB6_RHOBT RNA polymerase sigma factor OS=Rhodopirellula baltica WH47 GN=RBWH47_05940 PE=3 SV=1
---------------------------HSPNRVDVVSGVEETLMGKKLSRRSLQDDAFDAE----VN---RTMGQEFSDS-ISE---------E--GAA-
---G-----------DEDVVSRRDEFPTDPTEDPVRMYLMQMGQIPLLTRDQEVAAAQQIEATRERYRHCMMATDFMLQAALKLLQQVRDKQLRLDRTIE
VSV--------NA----AE-------KKAIMKRIV-------------------LRQ----------RGDYMVAINSSLPMR----RRRI----------
RRNKAVRLVEEMNLRTNKLQPIFEKLRRSCERMQEIKAILADA----TM-------------------P----------------GMPSGDELRSELRSL
MRLTYETPRTLSRRVDRCDTYRDDYDAAKRVLSAGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMIDTMNKIRQITRDLVQEHGREPTAEEVSKRSGLSLDDTRVILKMSRQPLSLDQPVGDHDDSVFGEFLQDHRDDDPLVETNREALKHQIDLA
METLNYREREILRLRYGLADGYTYTLEEVGRIFQVTRERVRQIESKAVRKLQQPYRAKSLVSFLD-
>tr|M5RCZ9|M5RCZ9_9PLAN RNA polymerase sigma factor OS=Rhodopirellula maiorica SM1 GN=RMSM_05726 PE=3 SV=1
---------------------------LSNVTDVFDTGAEESLMGKKFSRRSLQDDAYDAE----VT---RVMGEQYVDA-EDE---------D--ASD-
---D-----------DTESAARRVETDTDPTEDPVRMYLMQMGQIPLLSRDQEVSAAKQIEKTRERYRHWMLATDFMLQGSLKLLEQVRDKKLRLDRTIE
VSV--------NA----AE-------KKAIMKRIV-------------------LRR----------RADYMTAINKRLPMR----QRKV----------
RRNKAVRLIEEMNLRTNRLQPLFEKLRVAANRMLEIQSILSKP----AM-------------------P----------------GMPSEEELHQELHYL
MRLTFETPHTLGRRVKRCDHFSEDYDAAKRVLSAGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMIDTMNKIRQITRDLVQENGREPTAEEVANRSGLPLEDTRVILKMSRQPLSLDQPIGDHEDSVFGEFLEDYRDDDPLLETNREALKTQIDLA
METLNYREREILRLRYGLADGYTYTLEEVGRIFKVTRERVRQIESKAVRKLQQPYRAKSLVSFLD-
>tr|M5SWW7|M5SWW7_9PLAN RNA polymerase sigma factor OS=Rhodopirellula sp. SWK7 GN=RRSWK_06097 PE=3 SV=1
---------------------------LPSNRFENQPGTEESLMGKKFSSRSLQDDAFDAE----VS---RTMGQDFADA-ISE---------E--AIM-
---S-----------EEDLLARREEIPNDPTEDPVRMYLMQMGQIPLLTRDQEVSAAVQIEATRERYRHCMMATDFMLQAALKLLQQVRDKQLRLDRTIE
VSV--------NA----SE-------KKAIMKRIV-------------------LAQ----------RGDYLVAVNKSQPMR----RRRI----------
RRNKAVRLVEEMNLRTNKLQPIFEKLRRSALRMTEIRQILAEP----AL-------------------A----------------GMPTAEELRGELRYL
MRLTYETPRTLQRRVDRCDTLRDDYDAAKRVLSAGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEHARGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMIDTMNKIRQITRDLVQEHGREPTPEEVCARSGLTLDDTRVILKMSRQPLSLDQPVGDHEDSAFGEFLQDHRDQDPLVETNREALKRQIDLA
METLNYREREILRLRYGLADGYTYTLEEVGRIFQVTRERVRQIESKAVRKLQQPYRAKSLVSFLD-
>tr|A0A0P7EYN4|A0A0P7EYN4_VIBAL Uncharacterized protein OS=Vibrio alginolyticus GN=AOG25_08745 PE=4 SV=1
---------------------------KKTKYKLWHYYLTLGRLLNTDFEDNVD-------------------GLKFTE-V-D--------C--------
-DIS-----------HEEFKQKVESTEQNTRNDAESYYQSEIGTPPLLTQDQEVQHSQEIEHAKNTCLAFMLLIPSVAQQFAELHKEAKDDKKSFYPKIG
FWGDPFKPKD-----------------KNKEKTII---------T--DSAF-EEIKPRYKERFTI---------PV--KSKD----GEEPELKE------
-FLEAFMVLAKYNTDNEYITRFYKSTEELVKPL-------AAEARKLGLKLDVISSEFNKIDDEERFISLG----------GEKH-VTKLKMIRLRILSV
TEATGVPLPALREICNYMKIYHQAARNAINCMTEGNLRLVVKIAAKYNNNNLSFLDFVQEGNIGCIRAVEKFDYKLGYKFSTYATWWVRQAITRCIQEQG
NQIRIPAHVQDNIRKIDKFSKEFHIKNKRVPTEAEISEGIDLDIDKVILALNSINEPVSLTTTPSSSGNSSLLNVIEE-NTNGPSSIEETKNVGQYVDRI
LLNVTPREATVLRMRFGIQSYSDHTLDEVGKQFNVTRERIRQIEAKALKTLTKTLKPDEIEDVL--
>tr|V8CJM7|V8CJM7_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter canis NCTC 12740 GN=rpoD PE=3 SV=1
---------------------------NQQLEELFTTS-EQKMISHESIAQILKKPPTSAQ-TKKILELAKKHKCELVSSSELA-KTLNTKIKLRKLLDE
ELEE-----------EFDFMKERELLEWSRSDSPVRMYLREMGQIDLLTKEEEVELSKQIEFGENIILDAICSVPYLIDFIYDYKDALINRERRVKELFK
SFDDEGDSDGEN-----FE----------EN--DEE--EGE-DD-NEEGKRPISKKDRVLESFKALEKAKKDWLKVESHADT------EQELVFILTLAH
KKEVLKSKLLDLGPTSKLINEIVKAMENSLKNGDGFEKELARLSNITNMSRDEIVQAV----PEATMV----------------SVYMELKKLFQTKEAS
ESSFNIDPEKLKEILEQIKRGKSISDKAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYEKGFKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRIHKIIRKHLQETGKEPDVEVIAEEVGLSVDKVKNVIKITKEPVSLEAPIGSDDDGKFGDFVEDKTTLSAMDYILKEDLRAQIDEV
LSQLNEREQSVIKMRFGLLEDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|T1DWV0|T1DWV0_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter fennelliae MRY12-0050 GN=rpoD PE=3 SV=1
---------------------------NQNLEKLFKET-DQKMVSHEGIAQILQKPPTQAQ-VKKIQELAEKYKCKLVSASELA-KTLNTKIKLRKILDE
ELES-----------EFDFMKERELLEWSRSDSPVRMYLREMGQIELLTKEEEVEFSKQIEFGENIILDAICSVPYLIDFIYDYKEALINRERRVKELFK
SFDDEEGENGEDD----FD----------SD--DELDELDE-YE-NGESRRPVSKKDKVLESFKALDKAKKDWLKTESNASQ-------DDLFLILTLAH
KKEILKTKLLDLGPTSKLINEIVRAMENSLKSGDGFERELKRLDNITNMTREDIVAAV----PEATMV----------------SVYVELKKLFQTKEAS
DGGFDLDPEKLKEILEQIKRGKLISDKAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRIHKIMRKYVQETGKEPDVETIAQEVGLSVDKVKNVIKITKEPVSLEAPIGNDDDGKFGDFVEDRSSITPMEYILKEDLRAQIEDV
LDQLNERERAVIKMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A0C2ZSD5|A0A0C2ZSD5_9HELI RNA polymerase sigma factor RpoD OS=Sulfuricurvum sp. PC08-66 GN=rpoD PE=3 SV=1
---------------------------NKQLDEIFSQK-RKECITFEEIVNVFEKPPTLPQ-AKSIIKLAEKHKNCLYTAEQQT-KRLNDRIRKIRITEE
AKEN-----------PFDIMKERELLEWSRSDSPVRMYLREMGQIPLLTKEEEIEISKQIEEGEDIIIDAICSVPYLIDFILDYKDPLINRERRVKELFK
SFEEEEEESETES----DD-------ESD---------SD-SDD-DADEHPVTSKKDKVKESFKSLEKAKKEWLKFQI-EVD----FPEEYVHHHLTLSY
KKRLLKDALLFLEPTSKLINELVKAMETALKSDEGFDKELKRLEEIIHLEKEDIAAKV----PEATMV----------------STYMEIKKLFQTQEAS
KDSFNLEPEALVAILDQIKRGKTISETSKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYHKGFKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIMRKHLQEEGREPDVEKIAQEVGLSVEKVKNVIKITKEPISLEAPIGSEEDGRFGDFIVDKSSISPSDSVLLDDLRTQIDGV
LEQLNEREKAVIKMRFGIMDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A099BPX5|A0A099BPX5_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter sp. MIT 03-1614 GN=rpoD PE=3 SV=1
---------------------------NAELESLFKEE-DSDYITYEKIAQIILKAPTAAQ-VKKIKDLSKKYKKQLLSSSEIA-KMLNTQIKRKKMLNE
ELED-----------EFDFMKDKELLEWSRSDSPVRMYLREMGQISLLTKEEEISLSKKIELGENTILDAICSVPYLIDFIYDYKDALINRERRVKELFK
SFDDEEEENEEEE----EE-------------------FDMLDD-EEASRKSNSKKDKVMESFKALDKAKKEWLKVETPIV--------DELAHILLLSH
KKHILKMKLLDLGPTSKLIGELVKAMENTLKSGDGFERELKRLANITTMSRDEIAAMV----PETTMV----------------SVYVELKKLFQTKEAS
EGGFNLEPEKLKEILEQIKRGKSISDKAKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRIHKIMRKHVQETGKEPDIDFIAKEVGLPIDKVKNVIKITKEPVSLDAPIGSDDDGKFGDFVEDKSSVGPMDYILKEDLKVQIDEV
LEQLNDREKAVIRMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|V8C7M8|V8C7M8_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter macacae MIT 99-5501 GN=rpoD PE=3 SV=1
---------------------------SQELEKLFKTA-EPKMVSHEAVAQILKKPPNQAQ-VKKINDLVKKYKCTLLSSSELA-KKLNIKEEARRFVEN
ELDS-----------EFDFMKDKELLEWSRSDSPVRMYLREMGQIELLTKEEEVELSKQIEFGENIILDAICSVPYLIDFIYDYKDALINRERRVKELFK
SFDDEEDGEED-D----FD-------DESVDENDSEHNDGEYND-IDESKRPITKKDKVIQSFKALDKAKKEWLKVESMPEQ----ISEDELMYILTLAH
KKELLKDKLLDLGPTSKLINEIVKAMENSLRSGDGFERELKRLSNITNMSREDILNAI----PEATML----------------SVYMELKKLFQTKEAS
EGGFNLEPEKLKEILEQIKRGKTISDKAKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKNFKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRIHKIMRKYTQEHGKEPDTEYIAKEVGLPVDKVKNVIKITKEPVSLEAPIGNDDDGKFGDFVEDRSTMSAMEYILKEDLRSQIEDV
LNQLNERERSVIKMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|D3UHX0|D3UHX0_HELM1 RNA polymerase sigma factor RpoD OS=Helicobacter mustelae (strain ATCC 43772 / LMG 18044 / NCTC 12198 / 12198) GN=rpoD PE=3 SV=
---------------------------SQKLEEIFSEH-EKDFLSFEKIAEILQKMPTSAQ-VKKIRELCQKHQVTLVSSSELA-KTLNTKIKQRKILNE
ELSD-----------EFDLMKERDLLEWSRSDSPVRMYLREMGQIELLTKEDEVELSRQIKLGENIILDAICSVPYLIDFIYDYREALINRERRVKELFK
SFDDSEESGDED-----LE-------------------EEEEGD-EEEGKKPISKKDKVLKSFRALDTARKDWLNFEKGA--------EDEWMFILGLAH
KQQVLKEKLLDLGPTSKLITELVKAMENTLKSDDGFERELKRLANITTMSREDILAAV----PEATMV----------------NIYMDIKKLFQTKEAS
EEGFDLDPEKLKEILEQIKRGKIISDKAKNKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFDYKRNFKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRIHKIMRKYIQETGKEPDVEIIAEKVGLSVDKVKHVIKITKEPVSLEAPIGSDEDGKFGDFVEDKNSTNTMDQIMKEDLRAQIFEV
LDQLNEREQAVIRMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLRNYIE-
>tr|C3XG51|C3XG51_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter bilis ATCC 43879 GN=rpoD PE=3 SV=1
---------------------------NESLEQLFKST-KEDCISYEMIAQTIDTEPTMAI-LQKIKTLCKTHKKQLISSSEMA-KNLNEKIQAKQNMEE
SLSE-----------EFDFQRERELLEWSRSDSPVRMYLREMGQIPLLSKEEEINLSKDMEKGEDIIIDAICSVPYLIDFIYDYKDALINRERRVKELFK
SFDDPQSDDDSDD----IE-------FDSS----E---E---EE-NKPKARKNTKADKVLESFQALNDAKNDWLKIQEDSEY----ESRDELLHTLILAH
KKHILKQRLLSLGPTSKLINELTKAMENSLKNDDGFDRELKRLKNIANMTREEIVAQV----PENTMV----------------ATYVEIQKLYRTREAS
KSGFNLEPEKLKEILEQIKRGKRISDTAKTKMSRSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKQYKFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINKIKNLMRKHAQEKGEELDVESIANQVGLSVDKVKNVIKITKEPISLEAPIGNDDDGKFGDFVEDKSTMSSMDIMLKEDLREQIDNV
LDQLNEREKAVIKMRFGLLEDSDRTLEEIGKALNVTRERVRQIESSAIKKLKHPRIGRQLRQYLG-
>tr|A0A099B666|A0A099B666_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter sanguini GN=rpoD PE=3 SV=1
---------------------------MERIEYLFKTT-KDECISYEILAQAIDEEPTMAM-VNKIKSLCKSQKKRLISSSEMA-KNLNEKKEAKQNIEE
YLSE-----------DFDFQREKELLEWSRSDSPVRMYLREMGQIPLLNKEDEVIISKDMERGEDIIIDAICSVPYLIDFIYDYKDALINRERRVKELFK
SFEGDKDDDESVD----EI-------DIEV----E---FEEDTD-SKPKSKKNTKADKVLESFQALYDAKEDWLRMEKDLED----EKREELLHTLMLAH
KKNILKQRLLFLGPTSKLINELTKAMENTLKGKDSFERELKRLKRITKMTREEIIAEV----PENTMV----------------STYVEIQRLFKTREAS
KKGFNIEPEKLKEILEQIKRGKTISDEAKTKMSRSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKDYKFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINKIKNLMRKHAQEKGEELDVESIAKQVGLSVDKVKNVIKITKEPISLEAPIGNDDDGKFGDFVEDKDSMSSMDAMLKEDLRHQIDGV
LDQLNEREKAVIKMRFGLLDDSDRTLEEIGKALNVTRERVRQIESSAIKKLKHPRIGRQLRQYLG-
>tr|A0A099U1T3|A0A099U1T3_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter muridarum GN=rpoD PE=3 SV=1
---------------------------QEKLENLFKNS-KEIYISYEVIAQTIDEEPTMAV-VTKIKSLCKTYKKKIISSSEMA-KNLNEKIQERRDIEM
SLNE-----------EFDFQKERELLEWSRSDSPVRMYLREMGQIPLLSKEEEVSLSKDMEKGEDIIIDAICSVPYLIDFIHDYKDALINRERRVKELFK
SFEDIQENDEMDF----QE-------DEEM----D---F---QD-SKQKAKRNYKADKVLESFQALNDAKNDWLAVENDIQD----SKREELLHTFVLAH
KKHILKQRLLALGPTSKLINELTKAMENSLKNGDGFERELKRLSNITNMTREDILAQV----PENTMV----------------ATYIELQKLYKTRKAS
ENGFNLEPDKLKEILEQIKRGKKISDTAKTKMSRSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKQYKFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINKIKNIMRKYVQEKGEELDVEAIAEQVGLTVDKVKNVIKITKEPISLEAPIGNDDDGKFGDFVEDKSMVSSIDDLLKEDLRHQIDNV
LDLLNEREKAVIKMRFGLLEDSDRTLEEIGKALNVTRERVRQIESSAIKKLKHPRIGRQLRQYLG-
>tr|A0A071LQS5|A0A071LQS5_9PROT RNA polymerase sigma factor RpoD OS=Campylobacter mucosalis GN=rpoD PE=3 SV=1
---------------------------FTQIEELFAEN-SKGFVTYEKLIKLFDKAPTATA-VKKIETLAKTHKVQLISAAQIA-KMRNLAKKRAESQDV
DIDD-----------EFDLTGDTDFLEWSRSDSPVRMYLREMGQIALLTKDEEIEISKKIELGEDIIIDAFCSVPFLIDFILDYKEPLINRERRVKELFK
SFEDENEEEEDDI-------------DSDED---E-----ENED-EADAKPKKNLKNKVIESFKALEKAKKEWLKTNKQT-D----I-E-DILANLTLAF
KKKILKDKLMDLGPTSKLISEIVKSMETALKSDDEFDRELKRLKDILKLNKEDIIARV----PEATMV----------------STYVEIKKLFQTKEAS
KSGFNLEPAKLKEVLEQIKRGKKISDEAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKINRKYMQEEGKEPDVSVIAAEVGLSIDKVKQVIKITKEPISLEAPIANEDDGKFGDFVEDKSSLSPMDHILKNDLREQIDDV
LSQLNEREKAVICMRFGLLEDSDRTLEEIGKALNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|B6BJK9|B6BJK9_SULGG RNA polymerase sigma factor RpoD OS=Sulfurimonas gotlandica (strain DSM 19862 / JCM 16533 / GD1) GN=rpoD PE=3 SV=1
---------------------------NKAIDSYFADHKSKDCRTYEALIELFDKQPTAAQ-AKTIHKLMIKHKTCLYTASEHA-KKLNDAEARQRMLAN
NESD-----------NFDILKEHELLEWSRSDSPVRMYLREMGQIPLLTKEEEIEISKKIEGGESIIIDAICSVPYLIRFILDYREPLINRERRVKELFK
SFEDEKEDSEDDS----DS-------DSD---------TAIEIS-DEEETKTLTAKDKVTLSFKALEKAKKEWIKLEKIPED----IDEDIVQYFLNVTF
KKSVLKDRLLDLGPTSKLINELVKAMETALKSDDGYDKELKRLGKICELTKEDISSMV----PEATMV----------------STYMEIKKLVQTKEAS
KNSFDMEPEKLLDILEQIKRGKNISEISKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIMRKHLQEHGKEPDVEVIALEVGLSVEKVKNVIKITKEPISLEAPIGNEDDGRFGDFIEDKSSISPSDAILKDDLRVQIEGV
LEQLNEREKAVIKLRFGIMDDSDRTLEEIGRELNVTRERVRQIESSAIKKLKHPKVGRKLKSYIE-
>tr|A0A091B8H3|A0A091B8H3_9HELI RNA polymerase sigma factor RpoD OS=Sulfuricurvum sp. MLSB GN=rpoD PE=3 SV=1
---------------------------NKHIETLFSEHKSKNCLTYEAIVEPFDKQPTLAQ-AKSVLKLAQKHKICLFTSSEHA-KMLNQAAAKQLYIEE
ATGD-----------EFDILKQHELLEWSRSDSPVRMYLREMGQIPLLTKDEEIEISKRMEMGEGIIIDAICSVPYLIDFILDYKDPLINRERRVKELFK
SFEDESEDEGDDD----TE-------DE-------------ADE-EEVSEKAPSAKDKVVTSFKALEKAKKEWVKAEKVLDE----CPDEYVLHFMAVSF
KKKSLKEALLDLGPTSKLINELVRSMETALRSDEGFERELKRLAKICDLSKEDIAAKV----PEATMV----------------STYMEIKKLIQTKEAS
KGGFNMEPEKLADILEQIKRGKSISETAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIMRKHLQEHGKEPDVETIAEEVGLSVEKVKNVIKITKEPISLEAPIGNEEDGRFGDFIEDKMSISPSDAVLKDDLKVQIEGV
LEQLNEREKAVIKMRFGIMDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|Q30RJ8|Q30RJ8_SULDN RNA polymerase sigma factor RpoD OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rpoD PE=3 SV=1
---------------------------NKAIETFFANQKPKECSTYESLIELFDKQPTAAQ-AANIFKLIQKHKACIYTSSEHA-KLLNDAEARQRMIEN
NETD-----------SFDILKEHELLEWSRSDSPVRMYLREMGQIPLLTKEEEIEISKKIEGGESIIIDAICSVPYLIDFILDYREPLINRERRVKELFK
SFEDEKDESDDSE----DS-------DDD---------VEDSDE-ENVVEKTLTAKDKVTISFKALEKAKKEWIKLEKLAEN----TDEDLVMHYLSATY
KKGVLKERLLDLGPTSKLINELVKAMETALKSDEGYDKELKRLDKICDLTKEDIATMV----PEATMV----------------STYMEIKKLVQTKEAS
KNSFDMDPEKLADILEQIKRGKNISEISKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIMRKHLQEHGKEPDVEVIALEVGLSVEKVKNVIKITKEPISLEAPIGSEDDGRFGDFIEDKTSLSPSDAILKDDLRVQIESV
LEQLNEREKAVIKLRFGIMDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|E6LAQ1|E6LAQ1_CAMUP RNA polymerase sigma factor RpoD OS=Campylobacter upsaliensis JV21 GN=rpoD PE=3 SV=1
---------------------------NLELEELFKEN-KEDYITYEKLVKYLNKQPNLTA-IKKIRSLMKKYKVELYSAAQIA-QMQNVAKRLKQLQDT
GLEN-----------EFNLANENELLEWSRSDSPVRMYLREMGQIALLNKDEEVEISKKIELGEDIIIDAFCSVPYLIDFILDYQEPLINRERRVKELFK
SFDEEEDKENDKL----DE----------E----E---NDEEGE-EDKKTKKPNKKEKVIEKFKALEKAKKEWLKVKETKAK-------DELLDKLSIAF
KKNILKEKLMDLGPTSKLISEIVKSMETALKSDDEFDKELKRLKEITKLSKDEIAEKA----METTMV----------------STYMEIKKLFQTKEAS
KKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINQINKIIREHLQKNGKEPDVNDIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDKNSLSPMDNILKDDLKEQIDEV
LDQLNDREKAVIRMRFGLLEDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|E7G0A8|E7G0A8_9HELI RNA polymerase sigma factor RpoD OS=Helicobacter suis HS1 GN=rpoD PE=3 SV=1
---------------------------QEKLEKLFQEP--HPTVSYERIIDVIQKIPTTSQ-LKKIKELVAKYHKTLVHSSEYA-HTSLSEHKNKSVLEY
DIEE-----------NLDFIKEKELPEWSRSDSPVRMYLREMGEIPLLSKEEEVYLSKQIKLGENIILDAICSVPYLIDFIYNYKEALINRERRVKELFR
NFDNEGSMAKKDE----DV-------EI-------ED--SEEED-TPEIKRNSSDKDEVLESFKALNKAKKEWLKLNTPVEE-------DPLLHALTLAY
KCRVLKEKLYDLGPTSKLINELVKAMETSLKSDDGFEKELKRLKNITTMSREEIIAMM----PEATMI----------------GVYMEIKKLFQTKEAS
KDGFNLEPSKLKEILSQIKRGKLISDRAKNKMARSNLRLVVSIAKRYTSRGLPFLDLIQEGNIGLMKAVDKFEHEKNYKFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINRINKVMRKYMQENGKEPDLDLVAKEVGLPLDKVRNVIKITKEPISLESPVGNDDDGKFGDFVEDKNVVGSMEHIMREDLKAQIDGV
LDQLNEREKSVIRMRFGLLEDSDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYLR-
>tr|A0A0Q2XNM4|A0A0Q2XNM4_CAMJU RNA polymerase sigma factor RpoD OS=Campylobacter jejuni CVM 41975 GN=Y878_08095 PE=4 SV=1
---------------------------EAELEELFQEN-AKDYITYEKLVKYLTKQPSAST-AKKVQALMKKHKVQLFSAAEIA-QMKNIAKRLKQLQDT
SLEN-----------EFDLANENDLLEWSRSDSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFK
SFDDEEKSD-DKL----DE----------LD--IDEDEENETES-DEENTKKNSKKEKVIEKFKALEKAKKDWLKTKD---K-------DELLDKLSIAF
KKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLKDITKLSKEEITERA----LETTMV----------------STYMEIKKLFQTKEAS
EKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEV
LDQLNDREKAVIRMRFGLMDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A071L991|A0A071L991_CAMHY RNA polymerase sigma factor RpoD OS=Campylobacter hyointestinalis subsp. hyointestinalis GN=rpoD PE=3 SV=1
---------------------------FAQIEELFKEN-SKGYVTFEKLVRLFDKAPTAAA-IKKVEALAELHKIQLISAVEAA-KLKTLAKTKRLIIDN
PLEE-----------EFDLTSENELLEWSRSDSPVRMYLREMGQISLLTKEEEVEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFK
SFDEENDESEDED----ES-------IEEEY--EYDENDDSENK-NSALKKVTPKKLKVIESFKALEKAKKEWMKISKQNIS----V-ESDLTAKLNLTF
KKKVLKDKLMDLGPTSKLINEIVKSMETALKSDDDFDKELKRLKDITKLSKEDITARV----PEATMV----------------STYVEIKKLFQTKEAS
KTGFNLEPKDLKNVLDQIKRGKNISDDAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINKINKINKKYLQEEGKEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKYGDFVEDKTTLSPMEQILKGDLKEQIDDV
LDQLNDREKAVIRMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A0B0Q6P5|A0A0B0Q6P5_9PROT RNA polymerase sigma factor RpoD OS=Sulfurospirillum sp. MES GN=rpoD PE=3 SV=1
---------------------------YTELEELFVEH-EKSYVTYENVMELFTKPPTPAN-VKKLMALLEKYKVSLISSAEIA-KLRNKAKKRRQLQDE
ALEE-----------EFDLASEKELLEWSRSDSPVRMYLREMGQISLLTKDEEIEISKKIEFGEDIIIDAFCSVPYLIDFILDYKEALINRERRVKELFK
TFEDDDDSDDDSD----DE-------GEEY------------DE-DGEEKRTFSKKDKVIESFKALEKAKKDWLKSSRPPEE----V-DERMNYDLGLAY
KKKLLKEALMDLGPTSKLINELVKSMETALKSDFEFDKELKRLKNIVDLNKEDITTMV----PEATMV----------------STYMEIKKLFQTKEAS
KQGFDLEPETLKEILEQIKRGKRIADESKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKHLQEEGKEPDIETIALEVGLSADKVKNVIKITKEPISLEAPIGNEDDGKFGDFVEDKNSIAPIDHILKSDLKDQIDEV
LDQLNDREKAVIRMRFGLMHDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A7I1A4|A7I1A4_CAMHC RNA polymerase sigma factor RpoD OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rpoD PE=3 
---------------------------FSQIEKFFSEN-QKNYVTFERLIKFFDKAPTSTQ-VKKIEDLAKNFKIKLISSAEIA-KIKNILKRIEKAKSE
LEND-----------DFDIASDNELLEWSRSDSPVRMYLREMGAVDLLKKEEEIEISKKIELGEDIIIDAFCSVPFLIDFILAYEEPLINRERRVKELFK
NFDENEEEENEEE----IE-------EDE---------ENEEEN-VANKKAKISRRNKVMKSFKALEKAKKDWVKYDKNKSD----I-DKTLLQKLNLTF
KKKILKEKLMDLGPTSKLITEIVKSIEKALKSDTEFARELKRLKDIISLSKDEISQMV----FENTTV----------------STYMDIKRLFQTREAS
KQGFNIDPDRLKQILEQIKRGKKISDEAKSLMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKINRKYVQENGKEPDITILAKEVGLSIDKIKQVIKITKEPISLEAPVGNEDDGKFGDFVEDKGTISPIDQILKNDLKEQIDKV
LDQLNERERAVIRMRFGLLDDSDRTLEEIGKELSVTRERVRQIEASAIKKLKHPKVGRDLKKYIE-
>tr|C8PE38|C8PE38_9PROT RNA polymerase sigma factor RpoD OS=Campylobacter gracilis RM3268 GN=rpoD PE=3 SV=1
---------------------------LSPIEQFFDEN-QKSYITYERLIKFFDKAPTATA-VKKVEALTKKFDVELISAAEIS-KIKNLAKLKQKLLDE
GWDE-----------EFDLSSDVELLEWSRSDSPVRMYLREMGQIPLLTKEEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFK
SFDDSDEEGEEED----EE-------ELPED--DYDDEEDEES--ADEAKQRRSKKNKVIESFKALEKAKKDWMKFEKNAEA----I-EKGILSKLNLAF
KKKILKEKLMDLGPTSKLITEIVKSMETALKSDEGFEKELKRLKEITKLSKDDIIARV----PEATMV----------------STYVDIKKLFLTKEAS
KKSFNLEPERLKEILEQIKRGKRISDNAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKITRKYMQEGGKEPDINVIAQEVGLSVDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDKSSVSPIEQILKSDLKEQIDDI
LEQLNDRERTVIRMRFGLLDDSDRTLEEIGKELNITRERVRQIESSAIKKLKHPKIGRKLKTYIE-
>tr|M5IGE5|M5IGE5_9PROT RNA polymerase sigma factor RpoD OS=Campylobacter showae CSUNSWCD GN=rpoD PE=3 SV=1
---------------------------LSLIEELFKEN-AKGYITYEKLVKFLDKAPTAAI-AKKLESLAKENKVQLITSAEIA-KMRNIAKKRLALADD
NLEE-----------EFDLASETDLLEWSRSDSPVRMYLREMGQIALLTKEEEVEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFR
SFDDEGEEGSEEV----EE-------EEENE--EVEDDVEEGEE-KEAKPKKHNKKDKVIESFKALEKAKKEWLKTNKQN-D----A-IDEFLAKLTLAF
KKKILKDKLMDLGPTSKLITEIVKSMETALKSDDEFDRELKRLKDIIKLSKEDIIARV----PEATMV----------------STYVEIKKLFATKEAS
KSGFNLDPILLKEILEQIKRGKKISDEAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKINRKYLQEEGKEPDINVIAAEVGLSADKIKQVIKITKEPISLEAPIGNEDDGKFGDFVEDRSSLSPMDHILKNDLKEQIDEV
LDQLNEREKAVIRMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|E7A947|E7A947_HELFC RNA polymerase sigma factor RpoD OS=Helicobacter felis (strain ATCC 49179 / NCTC 12436 / CS1) GN=rpoD PE=3 SV=1
---------------------------QEELEELFSNS--GKDVSYEQILDILQKIPTSSQ-LKKIRELASKYEKNFVHSSECA-LTSLSDRKVKTTLEE
-DND-----------DLDFIKEKELTEWSRSDSPVRMYLREMGEIPLLSKEEEVELSKQIKLGENIILDAICSVPYLIDFIYGYKDALINRERRVKELFK
NFDDDETNSKKEE----ES-------EL-------EE---EDED-ALEVKKNLSEKDKVIESFKALDKAKKDWLKTNTPV---------DELLHALTLAY
KRRVLKERLYDLGPTSKLIGELVKAMETSLKSGDGFEKELKRLKNITNMSKEEIAAMV----PEATMI----------------GSYMEIKKLFQTKEAS
EDGFDLEPGKLKEILEQIKRGKLISDKAKNKMARSNLRLVVSIAKRYTSRGLPFLDLIQEGNIGLMKAVDKFEHEKNYRFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINRINKVMRKYMQENGKEPDLDLVAKEVGLPLDKVKNVIKITKEPISLESPVGNDDDGKFGDFVENDKVVGSMDHIMREDLKTQIDGV
LDQLNEREKSVIRMRFGLLEDSDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYLR-
>tr|F8KT71|F8KT71_HELBC RNA polymerase sigma factor RpoD OS=Helicobacter bizzozeronii (strain CIII-1) GN=rpoD PE=3 SV=1
---------------------------QEELEQLFQEG--GSSVSYERIVDIIQKIPTLAQ-VKKIKDLALKYHKSFIHSSEYA-LTSLHERKTRSALEE
-EED-----------SLDFIKEKELHEWSRSDSPVRMYLREMGEIPLLSKEEEVELSKQIKLGENIILDAICSVPYLIDFIYGYKEALINRERRVKELFK
NFDDEESATKKDE----EV-------EM-------EEG--EDDE-GLEVKKNLSEKDKVLESFKALDKAKKDWLKSNTPPTS-------DELLYALTLAY
KRRVLKEKLYDLGPTSKLISELVKAMETSLKSGDGFEKELKRLKTITTMSKEEIASMV----PEATMI----------------SIYMEIKKLFQTKEAS
EDGFDLEPSKLKEILEQIKRGKLISDKAKNKMARSNLRLVVSIAKRYTSRGLPFLDLIQEGNIGLMKAVDKFEHEKNYKFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINRINKVMRKCMQENGKEPDLDLVAKEVGLPLDKVKNVIKITKEPISLESPVGNDDDGKFGDFVEDKNVVGSMEHIMREDLKAQIDGV
LDQLNEREKSVIRMRFGLLEDSDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYLR-
>tr|K4RH67|K4RH67_HELHE RNA polymerase sigma factor RpoD OS=Helicobacter heilmannii ASB1.4 GN=rpoD PE=3 SV=1
---------------------------QEELEQLFKEE--QPSVSYGRIIDILQKVPSTSQ-IKKLKEWAVKYDKTFIHSSEYA-HTSLSERKTKNPIEE
EPEE-----------SLDF-KEKELPEWSRSDSPVRMYLREMGEIPLLSKEEEVHLSKQIKLGENIILDAICSVPYLIDFIYNYKDALINRERRVKELFR
NFDDEGSMPKKDE----EG-------EM-------EESESEEED-NPEVKRNVSEKDKVLESFKALSKAKKDWLKFNTPKEE-------DSLLHELTLAY
KCRVLKEKLYDLGPTSKLISELVKAMETSLKSGDGFEKELKRLKNITTMSRDEILAMV----PEPTMV----------------SVYMEIKKLFQTKEAS
EDGFNLEPTKLKEILNQIKRGKLISDKAKNKMARSNLRLVVSIAKRYTSRGLPFLDLIQEGNIGLMKAVDKFEHEKNYKFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINRINKVMRKHMQENGKEPDLDLVAKEVGLPLDKVKNVIKITKEPISLESPVGNDDDGKFGDFVEDRNVVGSMDHIMREDLKAQIDGV
LDQLNEREKSVIRMRFGLLEDSDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYLR-
>tr|A0A0M4SHX2|A0A0M4SHX2_9PROT RNA polymerase sigma factor RpoD OS=Campylobacter concisus GN=rpoD PE=3 SV=1
---------------------------FSQIEELFAEN-AKGFLTYEKLVKLLDKAPTATI-VKKIEQLAKTNKVQLITSAEAA-KLRNLAKKRAQKSDQ
DIDE-----------DLDLSGESDLLEWSRSDSPVRMYLREMGQIALLTKDEEVEISKRIELGEDIIIDAFCSVPFLIDFILDYKEPLINRERRVKELFK
SFEDESENEENED----SE-------DDIDE---E-----DEEN-EENEAPKKSAKNKVIESFKALEKAKKEWLKTNKQD-K----V-S-DTASKMALAF
KKKILKEKLMDLGPTSKLISEIVKSMETALKSDDEFDRELKRLKDIIKLSKEEIAARV----PEATMV----------------STYVEIKKLFTTKEAS
KQGFDLEPTRLKEILEQIKRGKKISDEAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYRKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIANEEDGKFGDFVEDKSSLSPIDQILKSDLREQIDDV
LSQLNEREKAVISMRFGLLEDSDRTLEEIGKALNVTRERVRQIEISAIKKLKHPKVGRKLKNYIE-
>tr|A0A0A8HKV7|A0A0A8HKV7_9PROT RNA polymerase sigma factor RpoD OS=Campylobacter volucris LMG 24379 GN=rpoD PE=3 SV=1
---------------------------ATTLEELFKEN-SKDYITYEKLVKYLAKLPNATS-AKKIRDLMNKYKVELISSAEIA-KKRNLAKKLKQLQDT
SLEN-----------EFDLANENDLLEWSRSDSPVRMYLREMGQISLLNKDEEVEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFK
SFEEDDKNEDDKN----ED-------DKNEDEDSEEENENEENN-SDKKVKKTNKKEKVIESFKALEKAKKEWLKTSTINAE-------DELLDKLVIAF
KKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLRDITKLSKEEIAERA----LETTMV----------------STYMEIKKLIQTKEAS
QNSFDLEKDQLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINQINKIIREYLQKEGKEPDVSIIAKEVNLSIDKVKQVIKITKEPISLEAPISNEDDGKFGDFVEDRTSLSPMDHILKDDLKEQIDEV
LDQLNDREKAVIRMRFGLMDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A0C2VI39|A0A0C2VI39_9PROT RNA polymerase sigma factor RpoD OS=Sulfurovum sp. AS07-7 GN=rpoD PE=3 SV=1
---------------------------LKLTEELIIERKNDAVITIETLVREFDKQPTMAQ-VKKIIKFLSDHKLKLVTPAEYA-LHLSDKIR-IHELIN
EDDD-----------DLEFLKEKELLEWSRSDSPVRMYLREMGKIPLLTKDEEVYLSQEIEAAEDIILDAICSVPYLIDYILNYKEPLLNRERRVKELFK
SFEDEKGDDDSSS----DE-------DTEELAENDDDNDDDIDE-KVHKIGGKKIKDQVIDSFKALEKAKKDWMKADEWLEI----EEKKKIFERFKVAH
KKQILKNNLNDLSPTSKLINELVKAMETALKSDDSFDRELKRLDNIINMDKDDIIDSV----PETTMV----------------STYVEIKKLFETKEAS
KDSFNLEPEKLAEILNQIRRGKTKSEVAKTRMAKSNLRLVVSIAKRFTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKHLQESGKEPDLETISAEVGLSIDKVKNVMKITKEPVSLEAPVGDEDDGRFGDFIEDRNTVSPSDSVLKDDLNQQINEV
LEQLNERERAVVRMRFGLLEDSDRTLEEIGKELSVTRERVRQIESSAIKKLKHPRVGRKLKNYIE-
>tr|I2K6E3|I2K6E3_9PROT RNA polymerase sigma factor RpoD OS=Sulfurovum sp. AR GN=rpoD PE=3 SV=1
---------------------------MKSIETLIQSKKKGDVVTLENIAKEFTKQPTAAQ-AKKIHKLASDANIEIISASEYA-KFVTT-KKKARKLVE
GSED-----------EFDLHKEKELLEWSRSDSPVRMYLREMGKIPLLTKEEEVDLSKRIEEGEDIIIDAICSVPYLIGYIINYKEPLLNRERRVKELFK
SFEDDKSDKDDSD----DS-------DDSD-----------------DETETSAPKDQVVDSFKRLEKAKKEWMKAEDLDTF----L-TKILHERLKIAF
KKEALKAALLNLGPTSKLINELVKAMETALKSDDSFEKELKRLDNIIKMDKDDIIDAV----PETTMV----------------STYVEIKKLFETREAS
KGGFDLSEEKLQEILEQIRQGKAKSEVAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYEKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKHLQETGKEPDLDTIAEEVGLSVDKVKNVIKITKEPVSLETPVGDEDDGRFGDFIEDKTTLSPTDVVLKDDLNNQIDDV
LDQLNEREKAVIRMRFGLLEDSDRTLEEIGKELSVTRERVRQIESSAIKKLKHPKVGRNLKNYIE-
>tr|E6WZN7|E6WZN7_NITSE RNA polymerase sigma factor RpoD OS=Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1) GN=rpoD PE=3 SV=1
---------------------------MKTLEALFDKTKKGELVTFENLAKEFDKAPTAAQ-ARKIKKMADEKGIKVVSASEYA-KHLTE-AKERLRLSE
GEEE-----------EFDITKEKELMEWSRSDSPVRMYLREMGKIPLLTKEEEIELSKQIEEGEDIIIDAICSVPYLIDYILNYKEPLLNRERRVKELFK
SFEDSSSDDEDEG----L-----------------------------DEAAGKAKKAQVVESFKALEKAKKDWLKENKLLKL----QEATIFHERLKVAF
RKHQLKEALINLGPTSKLINELVKAMETALKSDDGFEKELKRLENIVNMSKEEIAAAV----PETTMV----------------STYVQIKKLFETREAS
KNSFDLPPEKLEEILEQIRIGKAKSEKAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKHLQETGKEPDLETIAEEVGLSVDKVKNVIKITKEPVSLETPVGDEDDGRFGDFIEDKNSISPTEAVLNDDLNQQIDEV
LGQLNEREQAVIRMRFGLLEDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A0C2VRY6|A0A0C2VRY6_9PROT RNA polymerase sigma factor RpoD OS=Sulfurovum sp. FS08-3 GN=rpoD PE=3 SV=1
---------------------------MGRVEKLFSNKKKGVYLTYERIVKEFDKPLNMAQ-VKKIDKLSKESKLEIISASEYA-KLVTQ-IQKSIKIAD
ETLD-----------FFDFTKEKELLEWSRSDSPVRMYLREMGKILLLTKEEEIELSKQIEDGEDIIIDAICSVPYLIQYILNYKEPLLNRERRVKELFK
SFDDAEGVEESEE----EE-------DEDG-----------EG----ESLSLSQNANQVVDSFKKLEKNKKEWVKAEELEKL----LQEKILLEHFKVAF
KKEQLKHALLELGPTSKLINELVKAMETALKSDDGFEKELKRLENIINMDKDDIINAV----PETTMV----------------STYVEIKKLFETKEAS
KDSFNLDPVKLEEILNQIRQGKAKSEKAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKHLQESGKEPDLDTIAKEVGLSVDKVKNVIKITKEPVSLETPVGDEDDGRFGDFIEDKNTLSPTDVVLRDDLNKQIDDV
LSQLNEREKAVIRMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A0C2V2K6|A0A0C2V2K6_9PROT RNA polymerase sigma factor RpoD OS=Sulfurovum sp. FS06-10 GN=rpoD PE=3 SV=1
---------------------------NKRLDEIFKTYKKGDVITFENLAKEFDKQPTLVQ-SRKILKLLIDTKVDIVSSSEYA-KYLSD-KKRARKQAE
DNVE-----------DFDFLKEKELLEWSRSDSPVRMYLREMGKIPLLTKDEEIYLSREIEAGEDIILDAICSVPYLIDYIINYKEPLLNRERRVKELFK
SFEDEKESDDDDN----TD-------GDDD-----------ID----TEKVVIEKSIQVVYSFKTLDKAKKDWLKSEELDVL----I-IKKLHEHMKVAF
KKQQVKLALIDLGPTSKLINELVKAMETALKSDDGFEKELKRLGNILSMDKDDITDAV----PETTMV----------------STYVEIKKLFETKEAS
KDSFDLDPEKLAEILGQIRRGKAKSEVAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKIIRKNLQETGREPDLDTIAKEVGLSVDKVKNVIKITKEPVSLETPVGDEDDGRFGDFIEDKTTISPSEAVLKDDLNNQINEV
LDQLNEREKAVIRMRFGLLEDSDRTLEEIGRELNVTRERVRQIESSAIKKLKHPRVGRKLKNYIE-
>tr|A0A0C2YWT6|A0A0C2YWT6_9PROT RNA polymerase sigma factor RpoD OS=Sulfurovum sp. AS07-7 GN=rpoD PE=3 SV=1
---------------------------LKTIEEILNHKNSNDFITYENIAKEFSKPITTAQ-AKKIYKITKNKNINVISASEAA-KNIIIQIENIRKNSD
GSEE-----------EFDFAKEKELLEWSRSDSPVRMYLREMGKIPLLTKDEEVDLSIQIKEGEEIIIDAICSVPYLIDYIIRYREPLLNRERRVKELFK
SFEDADDSEEEVE----EA-------EIE------------YE----TETKPKPAKDQVLDSFKALEKAKKEWMKSSELIKF----IDIGVFSEKLKVAY
KKEMLKRALLDLGPTSKLINELVKAMETALKSDDSFDKELKRLKNIINMSKEEIALAV----PEATMV----------------STYVEIKKLFETREAS
KGGFDLSPEKLEEILNQIRLGKAKSEKAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYEKGYKFSTYATWWIRQAISRAIADQA
RTIRIPIHMIETINRINKITRKHLQENGMEPDIDTIAKEIGLSADKVRNVIKITKEPVSLESPVGDEDDGRFGDFIEDKSSLSPTEEVLRDDLRNQIDEI
LEELNERERAVIRMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE-
>tr|A0A0B2E9Y1|A0A0B2E9Y1_HELPX RNA polymerase sigma factor RpoD OS=Helicobacter pylori GN=rpoD PE=3 SV=1
---------------------------NEALEELFANS-LSDCVSYESIIQISTKVPTLAQ-IKKIKELCQKYQKKLVSSSEYA-KKLNAKIKNKQVLDE
ELED-----------GYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFR
SFDDDDENSVSDS----KK-------DDDSEE-DD--DSEE--E-NEERKKVVSEKDKVQESFKALDKAKKEWLKAEAPIDE----K-EDELVRLLTLAY
KRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLANITNMTKEDIIAQV----PEATMV----------------SVYMDLKKLFLTKEAS
EEGFDLAPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFSTYATWWIKQAISRAIADQA
RTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESV
LDQLNEREKAVIRMRFGLLDDSDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLR-
>tr|H3NPX4|H3NPX4_9FIRM RNA polymerase sigma factor SigA OS=Helcococcus kunzii ATCC 51366 GN=sigA PE=3 SV=1
---------------------------LSILEEAKSMADKNGTILISQLESI-------------LNDLLKDGFVEV---EADLDEVDYDSIDD--TDD-
YDEE-----------DYSEGDDLNEIKGAFVDDPVKMYLKEIGKVNLLSKKDEIVLARQMEEGDISFKAVQGERYSKKQAYFDLAKKIIFGNALFIYYIR
KFTN--SPDK-TE----RE-------KEGLEILDK--TILTDD-------IKSILFD------LVIPEGETLILDGKEVSSQ----GDT-----------
NKEEIIKLAKKINDKSDAFDEFSDFDVDLIDEVDKLST-----YKHLDIGLEKILNRINGNCEDELMCTLSMDE-----YDVIKQIFEKGK----LNEKM
IQRSGLEDEDIKY----LKKKYRIGKAAKGKLAETNLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVEKFDYKRGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMVETINKLVRVQRQLVQELGRTPTNEEIAKEMNIDVDKVREVRKIAQEPVSLEAPIGEEDDSHLGDFIEDERALAPDEAANQTMLKEQLEDI
LSSLSEREKRVIELRFGLIDGVPKTLEDVGKEFDVTRERIRQIEAKAIRKLKRPGKGDKIRDYLE-
>tr|J9Z1S3|J9Z1S3_9PROT RNA polymerase sigma factor RpoD OS=alpha proteobacterium HIMB59 GN=rpoD PE=3 SV=1
---------------------------KKATTKKVVEKKVKAKTTSKKKEEINPSDFLQKENLKSVNNYVENLDEDLFKLF----KAYTNSSDN--D---
-ISS-----------PDD-SEEEEKSTGVKSDDPVRMYLKEMGNVELLSREGEIAIAKRIESGLDKMMNSILECPASIDILKKWID----Q---LREIVD
FDEYFNEEND-NS----SK-------RKEIQKIEI--------ES---SIIEEFYKP-KLDRVLVLSENITKIKKNKNI-TK----ISLKDLK-----KF
QD-EILNYFNEIKIKPHKLEEIIAHLYSINKEIQSKEVSILSIM---------FQ-------------KN------------AEKLKTIYK----EILSL
SKIANQNTIEFKEKVREIQSGQRTANQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKIVRSSRQLILELGREPTPEELSARLKMPIEKVRKVLKIAKEPVSLETPIGDDDDSFLGDFIEDKNAVIPEDAVMQLNLRETTTKI
LSTLTPREERVLRMRFGIGMSSDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPIRSKKLKSFMD-
>tr|A0A0R2XMW3|A0A0R2XMW3_9BACT RNA polymerase subunit sigma OS=Opitutaceae bacterium BACL24 MAG-120322-bin51 GN=ABS34_02130 PE=4 SV=1
----------------------AQEKLNERIRNLIRLSKEQSFLTYKDINQALPDSVSNPDEIENIISILQNLEVEILDDTEVEAF------K--SRQEE
T-EE----------------KEVRTSQNDILDDPVRMYLKQMGQVPLLTREEEVAISKRIEKAELRAQDALFSTALTLEFQNNIVQKLLNREERFDRVVL
D-KKIESR------------------EIYFNS-----------------------LPKLLEQ---AHKLGERIYAAWDS---QLIATKPNEKRAHTRMKK
YETELRLVLRKYCLKLKVFEDFLSNLTPVYREIADHYDDLESAGQV----------------------------------ATRRKKKVDIKVTQKRLDEL
TLEFKMDAREFMEIIREVREGMRQAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETLNKVMQVQKQLLQELGHEPTAEEVADEMNLPIERVQSIMKMAQQPISLQSPVGDSDDTNFGDFIEDKGAENPYDMTAYSLLREKITDV
LDSLTERERKVLSLRFGLADGYSRTLEEVGRQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFE-
>tr|D5EJD7|D5EJD7_CORAD RNA polymerase sigma factor SigA OS=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) GN=sig
----------------------AQEKLNEKIRGLIRMSKEQGFLTYKDINKGLPESVNNPEEIENVISILQNLEIEVLDDSQVEAY------K--ARQEE
T-EE----------------KEVRTSQNDILDDPVRMYLKQMGQVPLLTREEEVAISKRIEKAELRAQDALFSTALTLEFQNDVVQKLLNREERFDRVVL
D-KKIESR------------------EAYFNS-----------------------LPKLLED---AHKLGDRIYSAWDS---MEEAAATNRKRARTRMKK
YEAELSGVLKKYCLKLKIFEDFLKDLTPTYMELKELYDDLETADKV----------------------------------TARRRKQVDVKAIERRLEEI
KLEFKIESKELLDIIREVRIGTREAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETLNKVMQVQKQLLQELGHEPTAEEVADEMNLPIERVQSIMKMAQQPISLQSPVGDSDDTNFGDFIEDKGAENPYDMTAYSLLREKITDV
LDSLTERERRVLSLRFGLADGYSRTLEEVGRQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFE-
>tr|A0A0P0GA68|A0A0P0GA68_9BACT RNA polymerase sigma factor RpoD OS=Candidatus Xiphinematobacter sp. Idaho Grape GN=rpoD PE=4 SV=1
----------------------QQKLLQEKVRELIKLAKEQGYVTYEDLDEALPKAVHDPENLESVIGQLRAVEIDIIESSEVDRI------K--DKKDP
E-EK----------------DEKQDNKLDILDDPVRMYLKQMGQVPLLTREQEVEISKRIEEAEMRVQSILYRFGFTAKAHLDLAQKLMESRERFDRVIL
D-KKIESR------------------ERYMKV-----------------------LPRLCQQ---VYKQAELVSDIYQS---KISG--HPAPQDWRDFER
NLVLLRRLYPKFYFKQKVVEDFVSLADETHHALSCLHHGEVTGAKH----------------------------------HGNGNNTSEHRRRIRQLEEM
ENCFWLNPEEFAVQYDELKQWHRRALVAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLIRVQKQLVQEYGREPTPEEVAEEIQLPVERVRAVLKMSQQPISLQSPVGDSEDTSFGDFIEDKRAENPADMAAIVLLKDKIKDV
LSTLTERERQVLEQRFGLTDGYSRTLEEVGRQFNVTRERIRQIEAKSLRKMRHPTRKRQLEGFFE-
>tr|B4CWV6|B4CWV6_9BACT RNA polymerase sigma factor SigA OS=Chthoniobacter flavus Ellin428 GN=sigA PE=3 SV=1
----------------------DQPDVQEKLRELIKLAKEQGYLTFDDLNEALPDNVNDPDEMETIMNRLRSMEIEIIEASDVDRF------K--DGKKA
E-------------------EEKPEAKLDILDDPVRMYLKQMGQVPLLTREQEVEISKRIEDAELNVQKHINRFGFIARAYLDLAHKLQEGRERFDRVIL
D-KKIESR------------------ERYMKA-----------------------LPKLCAQ---LDAAAQNCANAYKS---YVAHGGHDTK-SYTDFKK
AHDAIQRIYPKFFFKQKVTEEFVHLADEAHRLVSQWTEELNKPKKKA---------------------------------AGSHAHHHAPIDYGAKLKDQ
QMRTWLSPEEFQEEYKELKVWLKKALKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLMRVQKQLVQDYGREPTPEEVADEIQLPVERVRAVLKMAQQPISLQSPVGESDDTSFGDFIEDKGAENLSDMTAIVLLKEKIKDV
LETLTERERQVLEQRFGLVDGYSRTLEEVGRQFKVTRERIRQIEAKALRKMRHPTRIRQLEGFLE-
>tr|A0A0R2XB20|A0A0R2XB20_9BACT RNA polymerase subunit sigma OS=Verrucomicrobia subdivision 6 bacterium BACL9 MAG-120820-bin42 GN=ABS32_00410 PE=4 SV=1
----------------------QSPEKQERLRELIKLAREQGYLTYDDLHEALPETVTKPEQVEAVLIFLRNFEIDVIESSEVDRY------K--KPARE
A-VV----------------AEEKPEKLDILDDPVRMYLRQMGQVPLLTREQEVEISKRIEESDIGAVIHLHKFGFIAKEYISLGEKLLNSRERFDRVIQ
D-KKIEGR------------------EKYMTA-----------------------LKTLVKQ---LHAVHEKSHKVYAK---MFDAKSAKSK-VLKELAK
QQDAAEKLFVKFFFKQKVLEEFIAVADNIHRQLQEKTAELELILKSK---------------------------------SRSRQQESRKKALKEEIEEI
EHGSRLSRDEFFTHHRDLREWVRKAMRAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLMRVQKQLVQEFGREPTPEEVADETGMPVERVRAVLKMAQQPISLQAQVGDSDDTTFGDFIEDKSAENPSDMTAYSMLKEKIKDV
LDSLTDRERAVLEQRFGLVDGYSRTLEEVGRQFKVTRERIRQIEAKALRKMRHPTRIRHLRGFLE-
>tr|B5JG90|B5JG90_9BACT RNA polymerase sigma factor SigA OS=Verrucomicrobiae bacterium DG1235 GN=sigA PE=3 SV=1
----------------------SKHQVNERIRYLIRQSKEQGYLTHGDINEALPEGIDSQDDIDNVISILQNLEIDILDPEEVDNF------K--AKQEE
A-EE----------------EQTKANQHDILDDPVRMYLKQMGQVPLLTREQEVEISKRIENAEQKAQEELFSVGIMAEFTIDLAEKLLNREERFDRIVI
D-KKIENR------------------ETFFQE-----------------------LPVYVEK---SQKTYARMMNSWEE---LQEE--EKKKKIRSRFRK
QENTLRAYFPKFFFKLKVFEEYMDELSKDLTRINAIYRKLDRAKRP----------------------------------KTAADTHIKVEPLREELEIM
HNTYRLEPEKLLSLIAEVRRHLKAAHKAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEVAEEMALPVERVQTIMKMAQQPISLQSPVGDGDDTNFGDFIEDKSAENPYDQTAFSLLREKIIDV
LDSLTERERRVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFE-
>tr|I6ANB3|I6ANB3_9BACT RNA polymerase sigma factor SigA OS=Opitutaceae bacterium TAV1 GN=sigA PE=3 SV=1
----------------------PVGGINEKIRNLIRLSKEQGYLTFDDINEALPESVENQEEIDNVLSILQNLEIEILEPDQVEDY------K--QRQEE
Q-EE----------------EESRTTNNDILDDPVRMYLKQMGQVPLLTREQEVEISKRIETAELKAQTELFEASIIGRYIGTLGQKLLDREERFDRVVI
D-KKIESR------------------DAYFKA-----------------------LPKLVET---TQKNEKSVTDSWEE---FQKT--ADRKKVLSKHKK
RETVLRSNFSKFFFKLKVYEEWLETVRPVLSEIEQLQAQLARARAP----------------------------------KTKKDAAIDTKAINVRLQQI
EAEHRIEPGEFLEVVRKTNVHIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIIDV
LDSLTERERKVLSLRFGLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFD-
>tr|A0A0E3UIT4|A0A0E3UIT4_9BACT RNA polymerase sigma factor SigA OS=Verrucomicrobia bacterium IMCC26134 GN=sigA PE=3 SV=1
----------------------PPGGINDKIRALIRQSKEQGYLTFDDINEALPESVENQDEIDNVLSILQNLEIEILEPEQVEEF------K--ARQVK
E-EE----------------DETRTSQNDILDDPVRMYLKQMGQVPLLTREQEVEISKRIETAELKAQEALFEAAIIGKYIGGLGAKLIDRSERFDRIVI
D-KKIESR------------------EAYFKN-----------------------LPKLVEL---VQKNEESVADSWEE---YQKA--ADRKKILAKHAK
RESTLRSNFGKFFFKIKVYEEWLEQINPVLSEIEALNAQLERAKHP----------------------------------KTKKDAAIDTKAIHARLKQI
EADHRIAPTRYVEVVRQTNVHIREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETLNKVMQVQKQLLQEYGHEPSPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYALLREKIVDV
LDSLTEREQRVLKLRFGLTDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRLRQLTGFFD-
>tr|B3DW95|B3DW95_METI4 RNA polymerase sigma factor SigA OS=Methylacidiphilum infernorum (isolate V4) GN=rpoD PE=3 SV=1
----------------------ECPDKQEKLRTLIKLAKEQGYLTYDDINEALPESVNNSEEIEAVYDFLRTLEIDIIDSSDVDNA------K--AVTAL
--EE----------------IEGKESKLDIVDDPVRMYLKQMGQVPLLTREQEVEISKRIEQSEAMVKSCLHSFHFIAKEYLNLAKKLRQGKERFDRVIQ
D-KQVECR------------------EEYLAK-----------------------LPELIER---LELLIEKVDSLYSQ---LLDCPEKERKSLEKELQR
QKGCLEKIYEKFYFKQKVIEDFVQTSESYYREIISLEQNLENFEKEE---------------------------------ADPQEREKNLKAVHSKLREL
EKQIQLPLPVFKEKHQELKQWLNEAIKAKSEMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIADETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLREKIKDV
LGTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHPTRLRHLKGFLE-
>tr|A0A0C1UTY5|A0A0C1UTY5_9BACT RNA polymerase sigma factor SigA OS=Methylacidiphilum kamchatkense Kam1 GN=sigA PE=3 SV=1
----------------------EYPDRQEKLRSLIKLAKEQTYLTYDDINEALSDSINNPEEIDAVLDFLRTLEIEIIDSSDVDNA------K--SAVVT
--EE----------------SEGRESKLDIVDDPVRMYLKQMGQVPLLTREQEVEISKKIEQSEANVKSCLHSFHFIAKEYLNLAKKLGQGKERFDRVIQ
D-KHVECR------------------EEYLTK-----------------------LPELIER---LESYIAKIEDLYAK---LVKLPEKERKSLEKEFQR
AKGCLEKIFDKLYFKQKVIEDFVQVSESYYQEVLKLEKEKEALEKSE---------------------------------LDPEAKEKECKQLSLKFEQL
EHQIHLPLDLFKKKHEELKQWLNEALKAKSCMVEANLRLVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIAEETQMSVDRIRAIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLREKIRDV
LHTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHPTRLRHLKGFLE-
>tr|B1ZQW8|B1ZQW8_OPITP RNA polymerase sigma factor SigA OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=sigA PE=3 SV=1
----------------------PAGGINDKIRHLIRLSKEQGYLTFDDINEALPESVENQEEIDNVLSILQNLEIEILEPDQVDDY------K--QRMEE
A-EE----------------EESRSSQHDILDDPVRMYLKQMGQVPLLTREQEVEISKRIENAELKAQEALFQATIIGNYIVTLGQKLIDRQERFDRVVI
D-KKIDSR------------------ESYFKG-----------------------LEKLVLS---TRKAEEAVADSWQE---YLKA--AERKKVMAKHKK
RETTLRSHFGKFFFKLKVYEEFLEQLRPVLEEIESLDQQLERAKHP----------------------------------KSKKDATIDTKVIQHRLKQI
ETIHRIDPAELLKVVTQTRVHVREAHQAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEVADEMNLPVERVQQIMKMAQQPISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAFSLLREKIIDV
LDSLTERERRVLSLRFGLIDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFD-
>tr|A0A0G3EGU9|A0A0G3EGU9_9BACT RNA polymerase sigma factor SigA OS=Verrucomicrobia bacterium L21-Fru-AB GN=rpoD PE=3 SV=1
----------------------DREERNQRIKELMTLASEQGFLTFEDINETLPEEQVSVEDMEKTLALFQSMDIEVIRQEEVDEY------R--ARMER
--EE----------------RERQMQQSDILDDPVRMYLKQMGQVPLLTREQEVEISKRIEAAEIHTNDIFNRFGFATEAYLSVIERLEKGEERFDRIIS
D-KHVDCR------------------EDYFAE-----------------------LPRVLNG---IRRNDELADQYFRE---MTKSKAAEKKHAGKLFEK
ACDRLASYYEELHFKQKTVEDIVPAAEPWYDQTLGLKSKIEKLQNA----------------------------------RSSKSRKSELREKQRELREF
ERRIRMSADEFIERYRELQTWLRKGQRAKTEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYQRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLMRVQKQLIQEYGREPTPEELADEMEMPIERVRAILKIAQQPISLQSPIGEGEDTNFGDFIEDKSAENPSEMTAYSLLKEKIQDV
LYTLTDREQEVLNLRFGLKDGYPRTLEEVGRRFNVTRERIRQIEAKALRKMRHPTRIRKLEGFIE-
>tr|R7E2W0|R7E2W0_9BACT RNA polymerase sigma factor SigA OS=Akkermansia sp. CAG:344 GN=sigA PE=3 SV=1
----------------------DAPEIQEKIRELIKLAKEQGYLTFDDINDSLPNDIVDQQDYEAIMDRLRSMAFDIIDASDVDSY------T--DRTRI
E-DE----------------EEKLEAKMDILDDPVRMYLKQMGQVSLLTREEEVAISKRIEDAEQNVQRCVHRFGFIANAYLDVAYRLLDNEERFDRVIL
D-KKIDSR------------------ERYMKG-----------------------LAQLCAQ---IQQTHQDASGSFRK---LYRSKEKSVKARQAEFDK
ITGVLVKLFGRLYFKHKVIEDFCSMIDEARDRVLRMQKKV--------------------------------------------AQDPSNKELKEHLAEL
ELRMWMTADEMGEAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAAENPMEEASFSFLKEKIKDV
LDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPTRISKIKGFLE-
>tr|A0A0G0AND3|A0A0G0AND3_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWF2_30_66 GN=sigA PE=3 SV=1
----------------------DIDLKKELIEELIEKGKTKQHLTYEEIIEFSTRNHLEEKEVTELVQSLEKNGVDIFSADDYE---------------D
KD-------------------ELKASSASQVTDGVKSYLRDIGKIPLLNKKTELEISKRIASGKSESIDSISRFPFIHKELISMSDKLKKGVIQIKDVVQ
F-SEFDEK------------------EQFFLI-----------------------ANKI-KD---IINNEEKIYISYRG---KLDKKNDNKNKVVKFANK
FIKKLTKKIEKYILKI----------REKENLVKACEDQILKM---RKHD--------------------------AQNSKDFEEIEKTSRMAAKSIKNI
ESEIGLPSDIAIKHYKKLVKGQTKDKMAKDDLAKANLRLVVNIAKKYVNRGLHFLDLIQEGNIGLMKAVEKFEFERGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLNKINKIKRTYLQETGKEPSHAELAKELNLDEKKIKNIIKISKEPISLETPVGDSDDAFIKDFIESENDFSPSDTVASNDLKERVREV
LKTLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKAIKKLRHPSRSKKLKSFIE-
>tr|A0A0G0FMC6|A0A0G0FMC6_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWA2_36_9 GN=sigA PE=3 SV=1
----------------------TQEEIQEAIDIFISLGKKN-AVSYEKTMALGEDLGLSEPEMNIVLKKIDQSGIELVTQLEEEDE------E--F----
SE-------------------VVKSSETSQVVDGVKAFLRDIGKIPLLNKKTEQVIANKIAEGKAESIDAIAQFPFVAKELLSIAERLQKNSVALKDIIQ
F-SEFDEK------------------KHFVDT-----------------------VKKI-KN---LIENEAKIYQSYKG---KLTSEDQNKQEIIKISNK
LIRKLGKKIEKNIQKI----------NEREVQIQEWEKELKKIK--GKA----------------------------AKPELIEELDKNIRMAAKSTKNI
ESEMGLSHERTLAAFKQFSEGQIKDKEAKDDLARANLRLVVNIAKKYVNRGLHFLDLIQEGNIGLLKAVEKFEFERGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLNKINKIKHTFLQEHGREPTYTELAKELNLDEKKIKNIIKISKEPVSLETPVGEGEDASIKDFIESEHDVSPAESVASNDLKERVREV
LKSLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKALRKLRHPSRAKKLKSFFE-
>tr|A0A0G0V749|A0A0G0V749_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWE2_41_16 GN=sigA PE=3 SV=1
----------------------SLNVREEVFRQIIEYGKKTGSINYEHMLEMLEKVPVTEQHMQNLLASLERENIDLITDEDVEEG------A--AES-E
EEAP----------------IKPRESEGSFLADSVKCYLRDIGKIPLLNKKTETVIAEQIAAAKHDSIQSVSFFPLIHKEVIDLLERIEKNSVQLKDVIQ
F-SEYDEK------------------KALIKK-----------------------LQDI-KT---LIDHEEEIYRSYRP---KLDNEKENKENIARFSNK
YIRLLGKRVEKVLIKI----------QEKNDQAKFLENRIVVYQQDNPQEFK----------------------AGAQPSEVFVEMDQLIRSARKGVRKL
ESELGVSLDRANELFSKFSRAQRLDKLAKDNLARANLRLVVNIAKKYINRGLHFLDLIQEGNIGLMKAVEKFEFERGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLNKINKERRRFVQKHGREPSHAELAEIIGLEEKKIKNIIKISKEPISLETPVGDSDDAVIKDLIENENDMSPSEVVAGSNLKERVREV
LKTLTPREEKVLKMRFGIDVASEHTLEEVGKDFGVTRERIRQIEVKALKKLRHPTRRTVLQSFLE-
>tr|K1Z0F4|K1Z0F4_9BACT RNA polymerase sigma factor SigA OS=uncultured bacterium (gcode 4) GN=sigA PE=3 SV=1
----------------------STLSKEELVVAFIARAKRAGALSYEELMEFSEKQNMTEQETEQLLKTCDKENIELMTQDEQ-----------------
EE-------------------EEVREAPTQITDSVKSYLRDIGKIPLLNKKTEGEIAEKIASSKQESIDAISHLPFLHKEFILIGDKLAKNTLALKDVIQ
F-SEFDEK------------------TTLLKT-----------------------IKKI-KG---FVDNEEKIYRSYRG---KLDSEEENKHAISKLSNK
LIRKLGKKLEKFVKKI----------NEKEEAARAGIEKFNAYKSLKKVS--------------------------PEIELEMQELEKTIRAATKSVKKI
ESEVGAPKATILKYYKQHATAQIKDKRAKDDLAKANLRLVVNIAKKYVNRGLHFLDLIQEGNIGLMKAVEKFEFERGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLNKINKIKRTFIQDNGREPTYAELAKELNLDEKKIKNIIKISKEPISLETPVGDSEDATIKDFIENENEFSPSETIANTDLKERVREV
LKTLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKALKKLRHPSRCKKLLSFFE-
>tr|A0A0F9XXI0|A0A0F9XXI0_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWF2_28_16 GN=sigA PE=3 SV=1
----------------------SLSDINSKVKILLQKGKRSGVLSIEEVAVFSRKYRLTEESVNELLHMFEKEDIDLLSK---------------SGSFS
KGTE----------------KLRSLAEPSQLNDPVKLYLKEIGKIPLLNKATETVIATDIAQSKAKSIDSIAHFPFVVKDLLSFEERLQKDPLILKDLIQ
F-SDFDEK------------------KNFLKS-----------------------IGNL-KK---LVEKEEEIYKTYRS---KLGNESKNKEERIKLANK
LIYKLGKKIEKIVSKI----------REREDEIKSVEEKLKFYKNIKNPT--------------------------EQDLKFTEELENQIRTANKIIKKS
EGEAGISLDKINKYYKQFVVAQRKDKLAKDDLARANLRLVVNIAKKYINRGLHFLDLIQEGNIGLLKAVEKFEFERGFKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLSKINKITRTYMQEQGREPSYAELAKELNLDEKKIKNIIKISKEPVSLETPVGDSEDIYLKDFIEDENEYTPMDAVVNDDLKEKVREV
LKSLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKALRKLRHPSRSKRLQSFFD-
>tr|A0A0G0BYG0|A0A0G0BYG0_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWF2_32_72 GN=sigA PE=3 SV=1
----------------------ELDVIKESIETLIEKGKQFNVLAYEEILEFTEKNSFSDKEITDFLKLLEKEHIELISQEEEEAQ------D--DKGID
EE-------------------EKEIADAPQVADGVKCYLRDIGKIPLLNKETESKIAKEIAESKINSVNAVTQFPFFHKEILSIGDKVEKGIMQLKDIIQ
F-AEFDEK------------------AAFLKT-----------------------IKKI-KS---LIGNEEKIYASYRG---NLETDKDNKKSVARFANK
LIRKQGKRIEKAINKI----------KEREQSIKSLQAQQKSMAILAKSD--------------------------PSMAEEIELIENQIRAAKKSIKNT
ESEMGLSLDKTVKFYKQLLISQRRDKKAKDDLAKANLRLVVNIAKKYVNRGLHFLDLIQEGNIGLMKAVEKFEFERGYKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLNKINKIKRTFVQEHGREPTHTELSKELNLDEKKIKNIIKISKEPVSLETPIGDGEDAFIKDFIESDTDVSPADSVASGDLKERVREV
LKSLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKALRKLRHPSRSKRLQSFFE-
>tr|A0A0G0AQZ8|A0A0G0AQZ8_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWF2_33_332 GN=sigA PE=3 SV=1
----------------------SLSSIPNEVDTLVERGKSEGVLTYEEIALFCSKHKLADDDAEELIRICDKENIDLISKEAVSEE------E--DGEPS
KDIS----------------RIKQLVEPSQLSDPVKLYLKEIGKIPLLNKQTEKIIANKIVEGKKESIEAISFFPFVHKEFLQIGEKIDKDPLSLRDIVQ
F-SDFNEK------------------IKFLHH-----------------------INGI-KE---LIENEDKIYKSYRK---FLDNEDENRMAIVNISNK
QIRKFGKKIEKFISRI----------QEKELEIQSDSEKLNFYKSIKLPK--------------------------QDDLEQLENLDKNIRASQKLIKKV
ELEAGLPKESIIEYFRLYSSGRVKDKQAKDDLAKANLRLVVNIAKKYINRGLHFLDLIQEGNIGLLKAVEKFEFERGFKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLNKINKITRSFIQEFGHEPSYQDLAKELGIDEKKIKNIIKISQEPVSLETPVGDSEDTFLKDFIEDENEYSPADAVVNSNLKERVREI
LKTLMPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKALRKLRHPSRSKKLQSFFE-
>tr|A0A0G0LA40|A0A0G0LA40_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWF2_38_10 GN=sigA PE=3 SV=1
----------------------TLKSIEKLVDGLLEKGRNDGVMTYEELLAFTTKHKLSEEDSNELLRLMEKENIDLISA---------------TLDLA
VELE----------------KIKSLIEPSQLNDPVKLYLKEIGKIPLLNKTTEKVIADKIAIGKKESIESIAQFPFVAKELMSMEERLSREPLFLKEVIQ
F-SDFDER------------------QKLITQ-----------------------IQKI-KN---LVSNEEKIYRSYRQ---LLSDASHNRNQIIKLSNK
QIRKFGKKIEKIAAKI----------QERNDEIKVCEEKLSFYKGLKNPR--------------------------PDDLEQINNLETTIKNGQKIIKKS
ESETALNKDKILKFYHQLVVAQRKDKEAKDDLARANLRLVVNIAKKYINRGLHFLDLIQEGNIGLLKAVEKFEFERGFKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLSKINKITRNYIQEIGREPTYAELSKELNLDEKKIKNIIKISKEPVSLETPVGDSDDTCLKDFIEDENEYSPVEAVVNEDLKEKVREI
LKSLTPREEKVLKMRFGIDVASEHTLEEVGKDFAVTRERIRQIEVKALRKLRHPSRAKKLQNFFE-
>tr|A0A0G0JXG5|A0A0G0JXG5_9BACT RNA polymerase sigma factor SigA OS=candidate division TM6 bacterium GW2011_GWF2_37_49 GN=sigA PE=3 SV=1
----------------------SLKLLEKQVAALIEKGKNEGVLSYEELLAFTSKNKLGEEDTNELVSMFEKENIDFIMQ---------------YVGLD
KELE----------------RLKSFIEPSQLNDPVKLYLKEIGKIPLLNKTTEKVIADKIAEGKKQSIDSISQFPFVAKELVGFSERLERDPLFLKEIIQ
F-SDFDEK------------------IRLLEH-----------------------LNKI-KD---LIENEDKIYRSYRG---QLESEAQNKKNVVKYSNK
LIRKFGKRIEKLVFKI----------QERETEIKGLDEKLKFYKNLKKQT--------------------------QDDINQIAGFESSIRSSQKMIKKT
EQEAGLQKEKIASLYMQFALAQKKDKEAKDDLARANLRLVVNIAKKYINRGLHFLDLIQEGNIGLLKAVEKFEFERGFKFSTYATWWIRQAITRAIADQS
RTIRVPVHMVETLSKINKITRNYIQEAGREPTYSELAKELNLEEKKIKNIIKISKEPVSLETPVGDSDDTSLKDFIEDENEYSPVDAVVNEDLKEKVREV
LKTLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKALRKLRHPSRSKRLVNFFE-
>tr|A0A059WW35|A0A059WW35_9BACT RNA polymerase sigma factor OS=uncultured bacterium PE=3 SV=1
-----------------------------GVSPCASP-AGDSLIKFSDNSQLNDV---EPADLSEPVVAAD--ELEQIELETVVDDIPAVAQPKTASSDA
DD--DDD----------AD--AVVDDAALDVEDSTRLYLREIARVPLLTAEEEVMLAKTMELGKRIESDPASAVLDLH----VWAVND--TEPKARTTHP
KYPHRFAGEA-----ARVVNAALS-----------S---DEA---MDL----LVTAPRFGLTDA--------------I-----------AN---A-T-G
EAKELLERARNLRAVYN--ERLAILDWVHGALL--------RP----AVRDS------EPLIAMRTWSRQSVAL--PALRRWLDTDH--------DA-EA
IETMT-------------PVLQAAGATAREHLTSANLRLVVANAKKYVNRGMSLLDLVQEGNAGLMRGVDKFEWERGFKFSTYATWWIRQAIQRGLADQS
RTIRIPVHMVETMNRVTRVVRELTVSLGREPTNAEISEVLSLDPERVEEVRAYGRLPVSLETPIGDESDTELGALIEDPDAVSPLDAVTDTMLREQVERV
LDSLEGREQRVIRLRFGLDDGRPRTLEEVGHEFGLTRERIRQIEAHALRKLRHPSRSRKLREFATE
>tr|A0A059WLF8|A0A059WLF8_9BACT RNA polymerase sigma factor OS=uncultured bacterium PE=3 SV=1
----------------------------------------MTLIRFDETTDIVET---VPTAIDLESVVE-ETGLDAIDGDATLVELGLARAETAPTAVL
DE--EDD----------EV--VVQTPEELETEDSVRLYLREIARVPLLTAEEEVVLAKGIELGNQIVSDPALGILNLH----EWTFHN--TETKTRTAKP
QYVLPFADEA-----HRIVRDALA-----------S---EDA---AEL----LVTAPRFSLTVA--------------A-----------EE---A-QTD
TVREAVAHARNLRAVYN--ERLALLDWAYLAMEP------SHA----QTRTV------PQIGAMLAWARDEVAL--PALRRWIDAGN--------DA-DL
LAAMGHRPDGA-AADERGGVLVQLGRRSRDHLTQANLRLVVSVAKKYMKRGMGLLDLVQEGNAGLMRAVDKFEYERGFKFSTYATWWIRQAVQRGLADQS
RTIRIPVHMVETMSRVARVTRELTATLGRAPTNEEIAALLSEDAERVEEIQKLGREPVSLETPIGEESDTELGDLIEDSGAPSPLDAVTDTLLREQIESV
LASLSGREQRVLRLRFGLDDGHTRTLEEVGREFGLTRERIRQIESIALRKLRHPSRSRKLREYAA-
>tr|A0A059WJQ8|A0A059WJQ8_9BACT RNA polymerase sigma factor OS=uncultured bacterium PE=3 SV=1
-----------------------------GVSPCASP-AGDSLIKFSDNSQLNDV---EPADLPEPVVAAD--ELEQIELETVVDDIPAVAQPKTASSDA
D----DD----------AD--AVVDDAALDVEDSTRLYLREIARVPLLTAEEEVVLAKAIELGVRIRTEPWTAILDLH----EWTLHD--TEATARAKHP
MYALPFSAEA-----HRIVRGALV-----------D---ESA---GDL----LVTAPRFGFTEA--------------I-----------RA---A-HGG
PAFDLLDRARALRAVYN--ERLALLDWAHAVGH--------HP----ALRED------KSLKTMLAWARDRVAI--PALRRWVVAGH--------ED-DA
LAALGYRAED---ADQATGALIDQAKAARDHMISANLRLVVANAKKYVNRGLGFLDLIQEGNAGLMRAVDKFEWQRGFKFSTYATWWIRQAIQRGVADQS
RTIRVPVHMVETMQRVTKTTRELTVQLGREPTSAEIAATLSEDPERVDEVKRYGRTLISLETPIGEDGDTEFGSLIEDENAISPADAATNKLLREQIDRV
LDSLDDREERVLRLRFGLDDGRPRTLEEVGQEFGLTRERIRQLESLALGKLRHPSRSRKLREYA--
>tr|A0A0G3WKY6|A0A0G3WKY6_9BACT RNA polymerase sigma factor SigA OS=Endomicrobium proavitum GN=rpoD PE=3 SV=1
-----------------------------SFKDLIDIGKEQGYLTYDDINKTLPQKSVQAEKIDSFFVTLEDLGIKVVDNREYTSAKSKK----N-----
--SGEAV----------EQ--SVKVSSEDEDINPVRMYLSEMAKVPLLERSVEVELAKNIRENERKLKLIVLESPLIIKEIRNWETLISQDEMTPKELMP
RGRKSQRGMG-----VKIKGAV-Q-----------K------INH----------KKSLPQ------------------------------N---Q---D
KIKRLINKIKTIAQKLNEVRRFYKNPVSKVQSLF------KNYESKI-TAAD------FK---KATGCPIKEAA--DHL--------ESIRALLAKQANL
KEGFVITPEEMIETDKKIRELEEVIHRDKMKLIEANFRLVVSIAKKHVGSNLELSDLIQEGNLGLSKAVEKFEWKRGFKFSTYATWWIRQSINRAIADQA
RTIRIPVHMKELISKLTKVKKKFQQDIGREPTIEEYSKSLRLSTDRIRRILKMMQEPVSLATPVGEEEDSRLEDFIEDQHSPSPVAKTQQYRLQLELSKV
LNTLTPREAEIISLRYGIGVGYPSTLEEVGKKFGVTRERVRQIEAKAIRKLRHPTRSKSLREYLE-
>tr|B2KBW8|B2KBW8_ELUMP RNA polymerase sigma factor SigA OS=Elusimicrobium minutum (strain Pei191) GN=sigA PE=3 SV=1
-----------------------------AFKDLVEVGKENGFLTLDEINRSLTSSSMSAEDIDGLMGTLEDLGIQVVDRKKYKSVAMAE----K-----
--EAY----------------TEEFMANPDISNSIRMYLSEMGKVPLLSRDEEITLARNVREREKELRKLVLESPITMREICNWEELVDQEEMTTKELMP
RGKRTTNNMR-----KKLKEAA-K-----------F------IGR----------EPSISD------------------------------N---Q---N
KIKRLTNRIKSLAQRIAELNRF-FGQYAEVKKLF------TQASKKI-SKAE------LK---KKTRFTYEELE--TAI--------NNIDMIRSRHEKL
INTLPMSEKEFLAFNDRIVFFEDMILQDKLKLIKANLRLVVSIAKKHVNSNLELSDLIQEGGLGLMKAVEKFEYKRGFKFSTYATWWIRQSINRAIADQA
NTIRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLSMEKVKGVLKIMQDPISLSTPVGEDEDSNLEDFIEDKAGANPTVTASDFLRKQEVSEV
LNTLSEREAKIIRLRFGIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKMLKDYSDE
>tr|B1GZP5|B1GZP5_UNCTG RNA polymerase sigma factor SigA OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=sigA PE=3 SV=1
-----------------------------LFKGLIDTGKEQGYLTYEAISKNLPQRSMIAEEIDGFFVTLDNLGIKVLDNREYRSDKVKK----S-----
--RGEVV----------ER--SMKTV-NEEDINPVRMYLSEMAKVPLLERNMELKLVKSIRENEDRLKSIVLESPLIIKEIRNWETLISQQEMTTKELMP
RGRKSKIGMG-----LKIKIVV-K-----------K------INK----------LKSISC------------------------------N---Q---D
KIRRLINKIKTIAQKLNELRRFYKNSFSKVQVLF------KSCNLKI-SSAE------FK---KSTGLSMKDVA--EDI--------ANVKTLLVKQTNL
KDGFVITPEEMIETDRRIRELEYVIHRDKMKLIEANFRLVVSIAKKHVGSNLELSDLIQEGNLGLSKAVEKFEWKRGFKFSTYATWWIRQSINRAIADQA
RTIRIPVHMKELISKLTKSKKECQQNMGREPTIQEYSKILKLSCDRIRRILKMMQEPVSLAMPVGEEEDSRLEDFIEDQNSPNPVVKTQQYRLQLELEKV
LATLAPREAEIIRLRYGIGIGYPSTLEEVGKKFGITRERVRQIEAKAIRKLKYPRRNKSLREYLD-
>tr|J4WNE0|J4WNE0_9GAMM RNA polymerase sigma factor RpoD OS=SAR86 cluster bacterium SAR86A GN=rpoD PE=3 SV=1
-----------------------------KIAELIEKGREQGYLTYSDVNDHLPDDISDPDQVDEIIGMINDLGLQVHETAPDADTLMLA---ED--S--
--DQAAE----------AL--AAVENETGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEEGMRDLLNASVMYPKTVEYVLHYFQLVKDGEKKINDFLT
GF----VPSA-----GPGS-----------------------EASG----------PDMKEVQ----------------------------K---GREFK
KLGEIFQ---FLKFSPRMFEDI----AAIARHGL------NSIRELYPEN-L----------TKVRWVDGLMK---EKKKDLLEK--VKQDIAQKDILEI
ENKVGLSIKEIKEINRNMSMGETKMRRAKKDMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMMQDMGREPTPEELSKELDMPEDKVRKVLKIAKEPISTETPIGDDEDSSLGDFIEDTVIESPLENATEESLHFATDDV
LASLTAREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSSHLKSFLDE
>tr|A0A0R2UBU5|A0A0R2UBU5_9GAMM RNA polymerase subunit sigma-70 OS=SAR86 cluster bacterium BACL1 MAG-120828-bin5 GN=ABS11_01215 PE=4 SV=1
-----------------------------RIAELIEKGREQGYLTYSDVNDHLPEDISDPDQVDEIISMINDLGLQVHETAPDADSLMLS---DD--Q--
--DQAAE----------AL--AAVENERGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEEGMRDLLSSSVKYPGIVEHIINFYELVKLEEKKLGELLT
GF----VPSA-----GPGS-----------------------LENG----------PDLIEVQ----------------------------K---GTEFA
KLSLIFK---FLKFSPKMFEDL----AFIARKDL------AELRLMFQEN-I----------TKVKWIDSLMT---NKSKKSLEH--IKPDIAQKSIKAL
EERVGLNIKDIKEINRAMSMGETKMRRAKKDMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRVSRQMMQDMGREPTPEELSKELDMPEDKVRKVLKIAKEPISMETPIGDDEDSNLGDFIEDTVIRSPLQNATEGSLHYATDDV
LSTLTAREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSSHLKNFLDE
>tr|E0XQU2|E0XQU2_9GAMM RNA polymerase sigma factor RpoD OS=uncultured gamma proteobacterium HF0010_11B23 GN=rpoD PE=3 SV=1
-----------------------------DIAQLIQLGREQGYLTHADITDTLPDGSTDADNFEEITQVLRDMGIKVFEDTPDQDELMLG----------
--EDAVA----------AL--SQTEIESGRTTDPVRMYMREMGSVDLLTKTGEIGIAKRIEAAMKEVLSLCAEYPLCIEYILDFFNRIKIGEKKTQDLIS
GF----EEIV-----EQEF---------------------DSEDNV----------ISFEECE----------------------------E---KLALD
KLKTEFQ---VIKFNSKVFDTL----VQIPAEKK------HLVGGLIEDN-L----------INIRLLTKLAK---DKKKKKIDE--VKPTRIQKDLIKI
DENNLMPVTQIISLNKRINKAYRGLLRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRLSRQMMQEIGREPTPEEMSKRLDIPEDKMRKVMKIAKEPISMETPIGDDEDSNLGDFLEDTSINSPIDDASIRGLKDATDEI
LASLTAREAKVLRMRFGIGMNNDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDVLKSFLHE
>tr|A0A0F7M2P7|A0A0F7M2P7_9GAMM RNA polymerase sigma factor RpoD OS=Spongiibacter sp. IMCC21906 GN=rpoD PE=3 SV=1
-----------------------------RLKQLIAKGKEQGYLTYSEVNDHLPEDISDPDQVEEIIQMINDMGIQVFEHAPDEDTLIMA----S--P--
--DEAAA----------AL--AAVETETGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIREVMAALSYYPGVVAGILGEYNKVATEERRLGDIIN
GY----VPSP-----QAQA-----------------------ESSG----------PDPEEAA----------------------------N---GRELA
ELAEIFK---FFKLTPALFEPL----VEEVRTTL------SSIRASFQGN-E----------SNPKWVTEQMK---EY---NLAD--YKDVRIQSKIGII
EERQDLTISDIKEINRRISIGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDSATGEGLREATRDV
LSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDHLRSFLDE
>tr|F3L642|F3L642_9GAMM RNA polymerase sigma factor RpoD OS=gamma proteobacterium IMCC3088 GN=rpoD PE=3 SV=1
-----------------------------RLKSLIAKGKEQGYLTYSEVNDHLPEDISDPDQVEDIIQMINDMGIQVFEEAPDADELLMT---SS--A--
--DEAAA----------AL--AAVETEAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIRELMAALAHYPGAVEHVLNEYAQVTQEERRLGDVMV
GY----VPTA-----AEVA-----------------------ASSG----------PDPVEAA----------------------------K---GRELD
KLGEVFK---FFKLTPRVFDPL----LDMARDVL------QEVRTSFVGN-E----------TNEAWLDDLIK---KARAAKLEA--DRDTRLQRRIIAT
EEKSGLSVSEIKEINRRMSMGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVTIASPVDSATGQGLQEATTEV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDYLRSFLDD
>tr|H3NUW5|H3NUW5_9GAMM RNA polymerase sigma factor RpoD OS=gamma proteobacterium HIMB55 GN=rpoD PE=3 SV=1
-----------------------------LLKQLIAKGKEQGYLTYAEVNDHLPQDISEPDQVEDIIQMINDMGIQVFEQAPDADELILT---RS--A--
--DEAAA----------AL--AAVENEAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIRELMAALAYYPRVARRLCEEYDLVAKEERKLSDILV
GY----VPSA-----QEIA-----------------------NSTG----------PDPVEAK----------------------------K---GYEMA
KLGELFK---FFKLTPRVFDPL----VETPRAVL------AVVRESFQGS-E----------SKLDWIDGATK---KAVNERLAN--YREDRLQKRIAII
EDEVGLSTTEIKEINRRMSMGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDVTIASPVESATEEGLTEATREV
LGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDYLRSFLDE
>tr|B7RVL8|B7RVL8_9GAMM RNA polymerase sigma factor RpoD OS=marine gamma proteobacterium HTCC2148 GN=rpoD PE=3 SV=1
-----------------------------RLKALIAKGKEQGYLTYAEVNDHLPQDISDPDQVEDIIQMINDMGIQVFEQAPDADELLMT---RS--A--
--DEAAA----------AL--AAVETEAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIRELLSALALYPGAVKSILDEYELVTKEERKLADIMV
GY----VPTA-----AELA-----------------------AKNG----------PDPVEAK----------------------------K---GREME
KLGELFK---FFKLTPRVFDPI----SDTPRNIL------AAVRDTFQGS-E----------SDLKWLSRQAR---KKYGPKLNA--EKEIRLQRRIQAI
EGQCGLQISEIKEINRRMSMGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTISSPVDSATGQGLQEATKDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDYLRSFLDE
>tr|A0Z6X7|A0Z6X7_9GAMM RNA polymerase sigma factor RpoD OS=marine gamma proteobacterium HTCC2080 GN=rpoD PE=3 SV=1
-----------------------------RLKALIAKGKEQGYLTYAEVNDHLPQDISEPDQVEDIIQMINDMGIQVFEQAPDADELILT---RS--A--
--DEAAA----------AL--AAVENEAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIRELMAAMAHYPGVARKLSNAYDMVAKEERKLSDILI
GY----VPSA-----QEMA-----------------------AATG----------PDPVEAK----------------------------H---GYEMD
KLGELFK---FFKLTPRVFDPL----IDEPRESL------YIIRKSFSGS-E----------SDSRWISRVAR---KKIGARLAL--HKDDRMQRRISEV
EQATGLSVAEIKEINRRMSMGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDVTISSPVDSATEEGLTEATQDV
LAGLTAREAKVLRMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDYLRSFLDE
>tr|B8KQ57|B8KQ57_9GAMM RNA polymerase sigma factor RpoD OS=gamma proteobacterium NOR5-3 GN=rpoD PE=3 SV=1
-----------------------------RLKSLIAKGKEQGYLTYAEVNDHLPEDISDPDQVEDIIQMINDMGIQVFEQAPDADDLILT---GS--A--
--DEAAA----------AL--AAVETEAGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGIRELMAALAFYPGAVKSVLDDYALVAKEEKKLADILV
GY----VPSA-----QQIA-----------------------AKAG----------PDPVEAK----------------------------K---GREME
KLGEIFK---FFKFTPKVFDPL----NDEARSAL------AGVRESFQGN-E----------SNAKWLSRHTR---KKYGPKLNA--YKEERAQRQIGQI
EAATGLTVTEIKEINRRMSMGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQTINSPIDAATGQGLMEATKDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDYLRSFLDE
>tr|E7NVF8|E7NVF8_TREPH RNA polymerase sigma factor RpoD OS=Treponema phagedenis F0421 GN=rpoD PE=3 SV=1
-----------------------------IFTELLVYAKEKKSITWDEIYKFLPDGMAVSDLMDEIAEFLTQKKIYILSNNEDENEIDFDE------LYE
SEEETQK----------RL--LVNTK-DSLIDDPIKLYLRDIGQERLLTAKQEVILSKRMEDGENIIKDVIQNSGILIPEFYQIGKNIS-----------
---------------KKAFAVIDP-----------A---E--QNP----------RKELSEEIV--------------D-----------KK---KHQRK
KLLNNLQ---KIELQSEELDRFDTKKIKEFRRKK------ERCEKMRKIGR---------------SLAIPRQR--AKLEDELGMSSDEIQKITRRLRKI
EYDFENNIDDIIVMAREIHRGHTMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVARESRQLLQKLGRDPTDEEIATQLCWTVEKVKQVKNVAREPISLETPIGEEEDSSLGDFIPDTEIENPSNVTEKILLREEVQSV
LSTLPSREHEVLKMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALRRLRHPRHSRRLKDFLDN
>tr|A0A0H3BJ10|A0A0H3BJ10_TREPS RNA polymerase sigma factor RpoD OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rpoD PE=3 SV=1
-----------------------------AVMRLLEYAREKKAITHDEVENILAHYGVETELLHDVLDMLEQENIKVFSSEEEELEDEVFA------ADG
DGSGARQ----------NL--LSNAR-NIALDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLS-----------
---------------KKALAVLDP-----------A---E--SGT----------RKEISEEMA--------------D-----------RK---KRQRD
KLLSCLQ---KVDLQLEEIDRFDTRKIREYKRRK------DRHEKMRKIGR---------------GLAVPRQR--AKLEETLGMSADCIQKVTRRLRRI
EYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSI
LSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLDS
>tr|A0A089WPY3|A0A089WPY3_9ENTR RNA polymerase sigma factor RpoD OS=Cedecea neteri GN=rpoD PE=3 SV=1
-----------------------------QLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAPDADDLMLA-------A--
--DAAAQ----------VL--SSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLIT
GF----EDLA-----PNTT---------------------DGMDNS----------IDPELAR----------------------------H---GREIN
KLSEVFK---QFRLVPKQFDLL----VNNMRTMM------DRVRTLFTGN-E----------TNSKWFDAALS---MGWCEKLRE--VEDDRSLQKLQQI
EEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDV
LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD
>tr|C7HUH1|C7HUH1_9FIRM RNA polymerase sigma factor SigA OS=Anaerococcus vaginalis ATCC 51170 GN=rpoD PE=3 SV=1
-----------------------------IIDEFKSISEQDGVVTYKQVYTFE-TFKMEDESKKYVIGQIISNGIEIVEEQRTVLDED--EIRED--DDD
DEDEKKF----------MQ---DEAITGIKLDDPVKMYLKEIGKVKLLDAHEEIFLAKKMELGDIAFRSKSGKKLTKQ----------------------
------VKLA-----LDIFYGDLS-----------L---TSILEESLI-----EIGNQFENMLN--------------Q-----------EK----ELFD
NFGKLVA------TKES--DDIVSLIYLAFSDLY------KKGAERLIIN---------------DLINFSNKA--RQVYEYKPLSESSIKTKNLCKKIF
ED-QGFDADD----VKRLNRAIFDANRAKQKLAETNLRLVVSIAKKYVGRGMSFLDLIQEGNMGLMKAVDKYDYNRGFKFSTYATWWIRQAITRAIADQA
RTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAANYSMLRDQLNDV
LSCLGAREKRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKALRKLKSPNKSELLKDFL--
>tr|A0A0A0DZI1|A0A0A0DZI1_9SPIO RNA polymerase sigma factor RpoD OS=Spirochaeta sp. JC202 GN=rpoD PE=3 SV=1
-----------------------------VISKLLEHAEKNKTISLEELSDWLPDELSKTDSINKIIALLEASGVEITEDTRLVTGEEKT----------
DGDPQPR----------KL--ISNDR-DTSVDDPIRLYLREIGRENLLTAEQEVSLSKQMEEGENIITRALKTSGMLIPEFHELA---------------
---------------QKTSNKTEA-----------T---S--VNN----------KKEISDFLA--------------E-----------RK---IRKRE
ALLADIS---KIAIHQEEIVRFAAKKIKQYQQKQ------YRIGRIRAIGR---------------GLTKSDER--EEIESRLDLSVDEIKVTEKNLRAL
EIDFEAPVKEILEMAKEIVHGRIMMKTAKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLTQMKGREPTDEEVADQLGWTINRVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKEVENPAIRTAFRILQEQMQEV
LVTLPPREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRKLKDYLGN
>tr|F8F3G2|F8F3G2_TRECH RNA polymerase sigma factor RpoD OS=Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) GN=rpoD PE=3 SV=1
-----------------------------AVAKLIEYAKEKKSLSYDELSDFLPEHIVNSEKIEEVLALLEENNVQLIEEESLSEEE-ET----------
--QIEKK----------RL--VYNDK-ESSVDDPIRLYLREIGKEHLLTAEQEVELSKQMEEGENIIKRVVKKSGMIIPEYYTIA---------------
---------------QRAFSKKDP-----------R---E--MNS----------KKEMTEYMA--------------E-----------RK---RHLRQ
KMMPILA---DAEIHPEEISSFQAKKIKKYKKEQ------ERIEKLRSLGR---------------GLTIKEER--DRIEEALGLQSDEIKVTEKKLHQL
EAEFEEPIENINKMAKEINRGRIMMKSAKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQVLGREPTDEEIAERLGWTAQRVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKDVENPANQTAFTLLQEQLRTV
LQTLPPREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRKLKDYLDH
>tr|F5YC87|F5YC87_TREAZ RNA polymerase sigma factor RpoD OS=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) GN=rpoD PE=3 SV=1
-----------------------------AVIKLIEYAKEKKTLSYEELQDYLPEHIANSDKIDEVLALLEANNVQLTEEA--GEDEPET----------
--RTEKK----------RL--VSNDK-ESSVDDPIRLYLREIGKENLLTAEQEIELSKAMEEGENIIKGVIKKSGMIIPEFYHIA---------------
---------------QKAFSKRDL-----------R---E--LNS----------KKEITEHMT--------------E-----------RK---KKLRA
SVIKIVT---NAEIHPEEILGFQAKRIKRYKKDQ------ERIEKLRALGR---------------GLTIKEER--EKLEESLGLSSDEIKLTEKKLRQM
EAEFEETIESINLMAKEISRGRVMMKNAKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYQKGFKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQVLGREPTDEEIAERLGWTAQRVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKDVENPANLTAFTLLQEQLTTV
LSTLPAREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRRLKDYLDH
>tr|F5YHY5|F5YHY5_TREPZ RNA polymerase sigma factor RpoD OS=Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2) GN=rpoD PE=3 SV=1
-----------------------------AVVKLIEYAKEKKTLSYDELSDFLPEDIVNSEKIEQVLILLDANNVQLVDEEILSEDEAES----------
--RVEKK----------RL--VYNEK-ESSVDDPIRLYLREIGKENLLIAEQEVELSKQMENGENIIKGVIRKSGMIIPEFYHIA---------------
---------------QRAFSKKDP-----------R---E--LST----------KKEATEYLT--------------E-----------RK---RRIRA
KILEVIE---SAEIHPEEIAGFQAKKIKRYKKEQ------ERIEKLRALGR---------------GLTIKEER--ERLESGLGLSSDEIKVTEKKLRQM
ESEFEESIENINLMAKEINRGRVMMKNAKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQVLGREPSDEEIAERLGWTALRVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKDVENPANQTAFTLLQEQLSGV
LSTLPTREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPRRSRKLKDYLDH
>tr|H9UJ67|H9UJ67_SPIAZ RNA polymerase sigma factor RpoD OS=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) GN=rpoD PE=3 SV=1
-----------------------------ALEKLLEYAKKRQVISYDEITDFLPEEVVNSDKMDDVIALLGKNNIRLEDEDDAAEDDDDK----------
--EAAKR----------RI--VYSDK-DSAVDDPIRLYLREIGRENLLTAEQEVELSKKMEDGENIIKNVIKHSGMVIPELSRLA---------------
---------------EKAFSKQDP-----------K---E--LNS----------KKEISEYLA--------------E-----------RK---QQIRG
VILQKVE---DIEFHQQEILLFSVSKIRQFQREE------DRIEKLRALGR---------------GLANPTQK--LRIEEELGLTADSIKITDKKLKAF
EVEFESSTEEILRMSEEIVRGKTMMQSAKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQMLGREPNDEEIADRLGWSVSRVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKDVENPAHQTAFTLLQEQLRGV
LSTLPPREQEVLKMRFGLVDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPRRSRKLKDYLDN
>tr|A0A098R2B9|A0A098R2B9_9SPIO RNA polymerase sigma factor RpoD OS=Spirochaeta sp. JC230 GN=rpoD PE=3 SV=1
-----------------------------AVIKLIDYAKKKKTISFEEMNDLLPEEIVNSVLIEEVMVILGNYDIRLEDEIAAARLGQEEP------AAQ
AHGQKKS----------KV--IYGDK-ESAIDDPIRLYLREIGKENLLTADQEVELSKKMEDGENIIKQVIKKSGMMIPEFYNLA---------------
---------------TRAFSKKDP-----------R---E--MNT----------KKEISEYLA--------------E-----------RK---RKKRS
VLVLDLG---AIELHPDEITHFNAKKIHIYKRDI------SRTEKLRSLGR---------------SLIIADER--DQIESELGLTADEIKLTDKKLRNL
ELEFENTIEQILEMSDEIEHGKIMMQNAKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQVLGREPTDEEVAERLGWTPARVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKDVENPAHQTAFTLLQEQLREV
LGTLPEREQEVLKMRFGLEDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRRLKDYLDN
>tr|E1R314|E1R314_SPISS RNA polymerase sigma factor RpoD OS=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) GN=rpoD PE=3 SV=1
-----------------------------SVAKLLEYAKEKKRITYDEVNDFLPDSIVNSEKIEEVIALLEEHNISLDDEQDKNDDMPDDF------VLD
DDDDRTR----------RV--VYNDKDASAVDDPIRLYLREIGKESLLTAEQEVELSKQMEHGEAIIKRVVKESGMIIPQLFDLM---------------
---------------EKTFSKTDP-----------R---E--LDS----------KKEISEILT--------------E-----------RK---RKKRH
ELFSLIE---ELDIHQEEIVGFDTKRILHYQREQ------ERIERLRNMGR---------------GLAIPERR--RKIEEELQLSSDQIKVNEKHLQSI
ELEFEDAIDSILERSKEISHGQVMMKNAKDRLIQANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYSKGFKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQILGRDPTDEEVAERLGWTVLRVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKDIENPANQTAFTLLQEQLQEV
MKTLPPREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRRLKDYIDN
>tr|I0X6D4|I0X6D4_9SPIO RNA polymerase sigma factor RpoD OS=Treponema sp. JC4 GN=rpoD PE=3 SV=1
-----------------------------TIEKLLEFAKSKSFITWDEIIERLGQDFVNQDELMPVLDKLKEINREPVETGIIGVDDEPQD-------DD
DSMASKS----------RL--VNSDK-EASIDDPIRLYLREIGRENLLTAEQEIELSKAMEEGNNIIKDVIKNSGIMIPEFFAIA---------------
---------------QKAFTRIDI-----------H---E--SGT----------RKEINEEMA--------------D-----------KK---KQLRG
VILEELK---KVDIQSEELDKFDAIKIEEYHQKQ------EKKMKLRNLGR---------------KISIRSQA--VILEAELNMSADEIRKIDRKLHRL
EYEFENNVEDILVMAQNIEKGRVMMEKAKNRLINANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGFKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQKLGREPTDEEIAQQLGWNVAKVKQVKNVAREPISLETPIGEEEDSILGDFIEDKEVENPATQTAFTLLQEQLRTV
LNTLPPREQEVLKMRFGLEDGYSLTLEEVGLYFDVTRERIRQIEAKALRRLRHPRRANGLRDYIET
>tr|V5WH76|V5WH76_9SPIO RNA polymerase sigma factor RpoD OS=Salinispira pacifica GN=rpoD PE=3 SV=1
-----------------------------AIKKLLDYAKNKKTISYDEVNDLLPEELVNSEKIEDVMVILSQNDIRLSEEVQAQNEDIEAI------TKK
AGDEPKK----------KV--VYNDK-DSAIDDPIRLYLREIGKENLLTAEQEVELSKKMEDGENIIKGVISGSGMMIPEFFNLA---------------
---------------ARAFSKKDP-----------R---E--MSS----------KKEISEYLA--------------E-----------RK---KKKRD
SLVGRLS---DINLHQDEILQFSTKKIKSYQKEI------TRNEKLRSLGR---------------KLTILEDR--ELIEDELGLSSDEIKMTEKKIRSY
ELEFENPIDQILDMAGEIERGKIMMQNAKDRLIKANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQVLGREPSDEEIAERLGWTVSRVKSVKNVAREPISLETPIGEEEDSLLGDFIEDKDVENPAHQTAFTLLQEQLGDV
LETLPEREQEVLKMRFGLEDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRRLKDYLDN
>tr|A1R0D6|A1R0D6_BORT9 RNA polymerase sigma factor RpoD OS=Borrelia turicatae (strain 91E135) GN=rpoD PE=3 SV=1
-----------------------------IIKAILSHLGDKKAITFEDLSTFLSGDMLDPDNIDYIYGVLENEGISLVNEKMESDICDID----KLQMLD
DSIFSSG----------YI--KSGLLKDSNSEDPIRLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNEGLVIENYYNLV---------------
---------------NAIYSRVDK-----------E---E--FFE----------KDNNFDYYN--------------K-----------KK---HSERL
HIKEMLK---SVPLYQEELRIFDSSKIKDLKRQQ------KSILDLRILGR---------------DLAIPERR--ERIEKSLNIREDLIKLAQKELERI
EMYYEYPMDKIISMSEEILKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINRLNRETRYLVQVLGKDPTDEELSSRLGWDLKKVKTVKNVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPAKHTSFVVLQDQIRAV
LGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED
>tr|A0A0A7V2Q8|A0A0A7V2Q8_9SPIR RNA polymerase sigma factor RpoD OS=Borrelia chilensis GN=rpoD PE=3 SV=1
-----------------------------LIEGIIAHLANRKSLSFSELSNLLPDDILEPETLDCICTVLEDRGIRLVNKAPELDVVGTEEMDIESNMLD
DGFLGSG----------YV--KNNVFKDTHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNDGLVIENYYNLV---------------
---------------NVIYSRMER-----------E---E--FFD----------KESNPDYYN--------------K-----------KK---HRERL
ALKELLR---DIPLYQDELRIFDSNKIKDLQRQQ------RMILSLRVLGR---------------DLTIAEKR--IEIEKSLKLKEDTIKLAQKELERI
EMYYEYPMDKIISMSEEIAKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINRLNRETRYLIQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIEDKAIKNPANHTSFVVLQDQIRAI
LGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED
>sp|Q4UJT1|RPOD_RICFE RNA polymerase sigma factor RpoD OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rpoD PE=3 SV=1
-----------------------------KIDSLLKKAKKKIPVTYDDINKALPLNKNPSRQLEEAILKFSDAGVDILESNEDDEIKLD-EFKLS-----
--TDNEP----------ED--EVEEENIGTTDDPVRLYLKDMGGVDLLTRENEVEIAKRIEEGRKTMTASLCKSPIAMRCFIVWYEDLVNEKMLLRDLID
LEANML---------DEEH----------------------SSESR---------LPNIIERMK---------------------------A---KKYNN
NLELLINEVSEIHFNSKRTE----EILGKMYGIN------RDLINEYIGSV-----------INAAWKEKMLKN--KKWKELITKESDYIDQMIAELSVI
ESNTGLLVNDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGQLGDFIEDKNAVAPIDAAIQSNLREVTTRV
LATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSKKLNSFRSG
>sp|Q1RKH7|RPOD_RICBR RNA polymerase sigma factor RpoD OS=Rickettsia bellii (strain RML369-C) GN=rpoD PE=3 SV=1
-----------------------------KIDSLLKKAKKKGSVTYNDINRALPDG--TSEEIDKVMFRFSEAEVDILDTNEDDAIKIDDGFKIS-----
--TDHEP----------ED--ETEEENIGTTDDPVRLYLKDMGGVDLLTRENEVEIAKRIEEGRKTLIAALCRSPIAMDKFRKWYADLVNENMLLRDLID
LESNMM---------EDDH----------------------NSDSK---------LPNIIERMK---------------------------T---KKYND
NLELLISEVSEIHFNSKRTE----EILSEMYRIN------RDLINEYIGAV-----------INAAWKEKMLKN--KKWKELLTKESDYIDQMIAELSAI
EINTGLLVNDFKKLVNAIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKIIRTSRQMLNELGYEPTPAEIAARLSMPIDKVRKVMKIAKEPISLENPVGDGDDSYLGDFIEDKNAVAPIDAAIQSNLREVTTRV
LATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSKKLNSFRSG
>tr|K2JS20|K2JS20_9PROT RNA polymerase sigma factor RpoD OS=Oceanibaculum indicum P24 GN=rpoD PE=3 SV=1
-----------------------------AVKRLIQKGKERGYITYDELNAALPSDQMSSEQIEDIMTQLSEMGVNVIDDEDKEEREDRG----D--D--
--EDVVK----------GG--NIDDDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIGGICESPLTFDAILAWRDALLDGRILLRDIID
LDATYGEGDG-----EGDE---------------------AKENSLS------AMKPMVLEQL----------------------------G---EAQRS
ELVEMMN---KIRLNNSRIEAL----MEQIYELN------RRLTGAYFGN-E----------LDPNWLETLAGR---SWDKFLTT--QEEEKLRQLVADI
SSEAALPIGEFRRIVQTVQKGEREASRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPVDAAIQANLRETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDT
>tr|A0A077AU15|A0A077AU15_9RICK RNA polymerase sigma factor RpoD OS=Candidatus Paracaedibacter acanthamoebae GN=rpoD PE=3 SV=1
-----------------------------ALKRLLSRGKTRGYITYDELNDALPQDQLSSDQIDESMSMISEMGISIVDGDDVEEGALDS----S--D--
--YDFEE----------ES--EEEDTLSGRTDDPVRMYLREMGNVELLSREGEIAIAKRIESGKEMLLGGMCESPLTARTLDQWREDLQAGKMLLREIIS
IDTSGGLADL-----EEDE---------------------SASSPLS------AFLPKVITLL---------------------------------GLKI
SLIGIMD---ELKLNPNSVERL----LDIHNQMN------RRVANFLTDA-N----------FDQEWADNLKSQ--SGWDKFIEK--HAQDHLVATVQEI
QEDTSLSFSEFRRVVTVVQRGERESSRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMVRTSRQMMHEIGREPTPEELSEKLAMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAILPVESAVQSNLRETTTRI
LATLTPREERVLRMRFGIGMNTDHTLEEVGQQFAVTRERIRQIEAKALRKLKHPSRSRKLRSFLDT
>tr|F2NRR5|F2NRR5_TRES6 RNA polymerase sigma factor RpoD OS=Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091) GN=rpoD PE=3 SV=1
-----------------------------NVKKLLDYACSKQIISWDEITEILTPEFVNSPKMEEVLQLLTKNNIQVMEEDSLLDDEENE----------
--ADEKH----------RL--VSNDK-EYGVDDPIRLYLREIGKENLLTAEQEVILSKQMEDGQNIIKNVIRNSGMIIPEFYQIC---------------
---------------HTIYKKIDP-----------H---E--PGA----------RKEINELMA--------------E-----------RK---KQVRD
FIKESLL---NAELQTEEIETFTAKKIDEYHLIQ------ERRMKLRSIGR---------------RLAIRTES--AKLEKELAMSADEIRKIDRKLREL
EYDFENSVDEILEMKKEIERGRLQLEQAKNRLINANLRLVVSIAKKYTNRGLQLFDLIQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQKYGREPTDEEIAAQLSWPLARVKQVKNVAREPISLETPIGEEEDSSLGDFIEDKEIENPANQTAYTLLQEQLRSV
LSTLPQREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPRRSNGLRDYIDS
>tr|U2M2V7|U2M2V7_TRELE RNA polymerase sigma factor RpoD OS=Treponema lecithinolyticum ATCC 700332 GN=rpoD PE=3 SV=1
-----------------------------AVLKLIEHGKIKQIISWNDVSDFLPQELIISDKMEEILVLLAKNNIQLIEDTPEEAEEDAE----------
--ESDRK----------HL--VNNEK-DSGTDDPIRLYLREIGKEHLLTAEQEVQLSKKMEDGENIIKNVIKHSGMMIPEFYLIA---------------
---------------QKAYTRIDL-----------S---E--SGP----------RKEINEEMA--------------E-----------KK---KQLRK
KIVPQLQ---KADIQSEEIERFDAFRIREYRHRQ------ERKAKLRSLGK---------------KVAIKSER--IKLEQELGMSADEIRKIDRKLRRL
EYEFEDNVQDIMTMAQEIDAGRKMMEEAKNRLINANLRLVVSIAKKYTNRGLQLFDLIQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQRLGREPSDDEIANQLGWQVTRVKQVKNVAREPISLETPIGEEEDSLLGDFIEDKEVENPATKTAYTLLQEQVQGV
LSTLPPREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPRRSSGLRDYIDI
>tr|F4LMN9|F4LMN9_TREBD RNA polymerase sigma factor RpoD OS=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) GN=rpoD PE=3 SV=1
-----------------------------AITKLLEYGKTKHSVTWDELNEYLPPEILNTDKMENVLMLLEKNHVQIEEEDTLDDADASA----------
-ASPERK----------RL--VYNDK-DSSGDDPVRLYLREIGKEHLLTAEQEVFLSKKMEDGENIIKNVIKKSGILIPEFYSIG---------------
---------------IRAFSRIDI-----------H---E--PGN----------RKEINEEMT--------------E-----------KK---KQLRE
KILPSLQ---LIDIQSEEIERFEAKRISEYRHRQ------EKKAKLRSLGK---------------RIAIKSER--TKLEYDLGMSADEIRKIDRKLRRL
EYEFENDVSEILSMAKEIDRGRRMMKEAKNRLINANLRLVVSIAKKYTNRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQRFGREPTDEEIAAQLGWPVNRVKQVKSVAREPISLETPIGEEEDSLLGDFIEDKEVENPAAKTAYTMLQDHLRSI
LATLPPREQEVLKMRFGLDDGFSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPRRSGGLRDYID-
>tr|U2MKQ5|U2MKQ5_TRESO RNA polymerase sigma factor RpoD OS=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 GN=rpoD PE=3 SV=1
-----------------------------NVQKLFEYAKEKSVVTWDEVTDMLGQDFVNSPKMENVLQLFSSENLQIVESDDLLVEDEEPD-------DA
DESIVKS----------RL--VNSDK-ETSIDDPIRLYLREIGKENLLTAEQEVILSKKMENGKNIIKDVIKNSGIMIPEFFAVA---------------
---------------QKAFTRIDI-----------H---E--PGP----------RKEINEEMA--------------E-----------KK---KQLRK
KIQPQLQ---RIDIQSEELDKFDAQKIADYHQKQ------EKKMKLRSLGR---------------RIAIRSES--QKLEKELNMTTDDIRKIDRKLYRL
EYEFENSVDEILSMGKEIERGSAMMEQAKNKLINANLRLVVSIAKKYTNRGLQFFDLVQEGNIGLIKAVEKFEYRKGFKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQKLGREPSDDEIAQQLGWPVTRVKQVKNVAREPISLETPIGEEEDSLLGDFIEDKEVENPASQTADTLLREQIRSV
LDTLPPREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPRRANGLRDYIDP
>tr|H7EM74|H7EM74_9SPIO RNA polymerase sigma factor RpoD OS=Treponema saccharophilum DSM 2985 GN=rpoD PE=3 SV=1
-----------------------------AIAKLLAYAKGKQVITFDEINEVLGPDFTNPENEEDVLRILAENKIQVIEEGIDDLSSQEAD-------EE
-GIFDSH----------KL--VNSDK-ESSVDDPIRLYLREIGKEKLLTAEQEVKYSKEMEDGENIIKDVIKQAGMMVPEFFEIS---------------
---------------QKAFKKIDP-----------H---E--PGP----------RKEINEAQA--------------E-----------KK---KQLRA
KIQPALQ---QIDIQTEEIELFEARKIDDFYNTQ------EKKMKLRSLGR---------------RLAIHSEA--EKLEIELGMRSDEIRKIDRELRRM
EYEFENSVEEILTMAGKIEQGRKKLEKAKNHLINANLRLVVSIAKKYTNRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQA
RTIRVPVHMIEQINKVVRESRQLMQKLGREPTDEEIAQQLGWPASRVKQVKNVAREPISLETPIGEEEDSQLGDFIEDKDVENPANKTAYTILQEQIRSV
LDTLPQREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPRRSNGLRDFVET
>tr|G8QLL9|G8QLL9_DECSP RNA polymerase sigma factor RpoD OS=Dechlorosoma suillum (strain ATCC BAA-33 / DSM 13638 / PS) GN=rpoD PE=3 SV=1
-----------------------------RLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDLLMS---AV--A--
--DEAEA----------AL--STVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVID
GL----EEEL-----AAEE----------------------GDDEGA------AVLQLKTDAL----------------------------K---GSLQQ
QISAELM---NIRFTSKVIERL----CDSVRSMV------DSVRESFPGN-E----------INLEWVEKEIAV---AYGPILTR--TAPNEEQRKLLAL
QDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAALYSGLREVTKEI
LDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLDN
>tr|A0A0R0LL01|A0A0R0LL01_9PROT RNA polymerase sigma factor RpoD OS=Ferrovum sp. JA12 GN=rpoD PE=4 SV=1
-----------------------------RLKNLVVLGKERGFLTYAEINDHLPDDMLDAEQIESVIGMINDMGIAVYDEAPDSEQLLMS---AV--A--
--DEAEA----------AL--SSVDSEFGRTTDPVRMYMREMGTVDLLTREGEIEIAKRIEDGLKHMIQAISSCPSTIDQVLELADKVERDELRVDEVID
GL----EEEL-----EAQM----------------------SEEGGA------ISEQLKADAL----------------------------K---GTLQE
SISQELM---GIRFTAKQVESL----ANGLRHLV------ERVRQSFPGN-E----------INTKWITDEAS---GRYSTALTR--LKHNEQQENLLAI
QRDVGLPIKDLKEIARQMSTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGIEPDPAELAQKMEMPEDKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATLAPSDSALYASLREATKDV
LDSLTQREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERLRSFIDN
>tr|A0A011N0J5|A0A011N0J5_9PROT RNA polymerase sigma factor RpoD OS=Candidatus Accumulibacter sp. SK-11 GN=rpoD PE=3 SV=1
-----------------------------RLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIISTFNDMGIQVYDEAPDAETLLMS---AA--A--
--AQAEQ----------AL--STVDSEFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMIQAISACPTTIAEIISCADRIARDEMRIDELID
GL----GSLE-----ELTE----------------------EEDEGA------AALKLKTEGL----------------------------R---GSLQQ
QISEEMM---GIRFTSKTIERL----CDSVRAMV------EEARAVFPGN-E----------LNIDWVDAEIAA--ASYAAVLTR--NAPNEEQRKLLAL
QERIGIPLRELKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKMNRISRQILQETGLEADPATLAKKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDQATLAPTEAALYSSLRFITKDV
LDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLDN
>tr|A0A0P1F3A6|A0A0P1F3A6_9RHOB Sigma-70 OS=Thalassobacter stenotrophicus GN=rpoD PE=4 SV=1
-----------------------------AVKKMIAEARTKGYVTYDQLNAVLPPEQVSSEQIEDVMSMLSEMGINIIEAEEAEDGEDEG----T--A--
--VRDLA----------VG--ATGGEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQAITIWHEELLNEDILLRDVID
LETTFGVEPV-----VAN---APE-----------A---PDADGSLA------AMKPQVLAAL----------------------------D---DTLRS
EIVELVN---ELHLHNNRIEAL----IDQLYGIN------RRIMSEYRGH-E----------LDPGWVDRMSEK--SGWQMLLER--SRDKQLRADMAQV
GQYVGVDINEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
>tr|A0A0P7YQU0|A0A0P7YQU0_9RHOB RNA polymerase primary sigma factor RpoD OS=Rhodobacteraceae bacterium HL-91 GN=rpoD PE=4 SV=1
-----------------------------SIKKMIAQAKERGYITYEQLNKALPPEQVSSEQIEDVMSMLSEMGVNVVEDDDETDESDAK----------
--LEVTV----------AT--SSNSETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLNEDVLLRDVID
LETTFGVPVT-----NGL-----P-----------S---QDADGSLS------AMKPRVLDTL----------------------------A---GKLRS
QLVEMVN---SLHLHNNRIEAL----VDQLYGIN------KRIMSAYRGS-E----------LDPTWCDRMEEK--PGWQALMER--SRDKELRADMAQV
GQYVGVDINEYRRIVAQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTSEELAEKLQMPLDKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNALLPLDSAIQDNLRETTTRV
LSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
>tr|A8LR74|A8LR74_DINSH RNA polymerase sigma factor RpoD OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) GN=rpoD PE=3 SV=1
-----------------------------AVKKMIAEARTRGYITYDQLNQVLPPDQVSSEQIEDVMSMLSEMGINIIEEDEAEDGDAPA----------
--QREVA----------VS--TSSSETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDVID
LEATMG-----------ESEMAAA-----------A---PDADGSLA------AMKPKVLETL----------------------------D---ESLRA
EIVLLVN---ELHLHNNRIEAL----IDQLYGIN------RRIMAAYRGY-E----------LDPTWLERMAEK--PGWQAFIER--STTKELRSDMAQV
GTYVGVDITEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
>tr|A0A0E2PR37|A0A0E2PR37_RHOCA RNA polymerase sigma factor RpoD OS=Rhodobacter capsulatus Y262 GN=rpoD PE=3 SV=1
-----------------------------AVKRMIGEAKERGYITIDQLNAVMPPETVSGEQIEDVMSMLSEMGINVVEGEEVEESEG------------
--VREIA----------VA--GAAGETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEEILLRDVID
LEATFGMEGM-----EGIEEGLDP-----------A---ADADGSLA------AMKPKVLETL----------------------------D---GTLRS
EIVLLVN---ELHLHNNRIEAL----IDQLYGIN------RKIMSEYRGY-E----------LDPTWMDRMSAK--PAWVTLFEK--SRDKDLRHEMAQV
GQYVGVDISEFRRIVNQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
>tr|A0A0P7Y1Z0|A0A0P7Y1Z0_9RHOB RNA polymerase primary sigma factor RpoD OS=Rhodobacteraceae bacterium HLUCCA12 GN=rpoD PE=4 SV=1
-----------------------------SVRRMISAARERGFITYEQLNQVMPSDQVSSEQIEDVMSMLSEMGINVVEEEETDEAEAPA----------
--GTELV----------VT--TSTSETLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAIIIWRDELLSEDVLLREVID
LDATFGGAFA-----EELQ---AS-----------G---DDADGSLA------AMKPRVLETL----------------------------D---ARLRS
EIVELVN---SLHLHNNRIEAL----IDQLYGIN------KKIMTEYRGY-E----------LDPTWCDRMARH--KGWDTLFDR--FGDKELRGEMAQV
GHFVGVDIPEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA
RTIRIPVHMIETMNKLVRTSRQILHEIGREPSPEELAEKLQMPLDKVRKVLKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLRETTTRV
LSSLTAREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
>tr|A8ZUC3|A8ZUC3_DESOH RNA polymerase sigma factor RpoD OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpoD PE=3 SV=1
-------------------------NFKQKLSGLIAKGKKQGELTYEEIAKAIEANDIPTDQMDDLLVHLDDLDISVVKKADQADDSGEDG------AKS
TTRGDSP--------------VTYDSDPGSVTDTVKMYLREMGLVTLLSREGEVEIAKKIEAGEQEALRGMLDTAVGVESIIAYGDNIDVGNLRPKSVLK
DVD-----------------------EGDAGE-------------EEI------LR---I---DAFAATIRQIKALDATQKHLSV---SLSATERKTVAE
KTDEIFELLLPWRLESEVLDAMEERIQDEIKWFDTMEQTIDRRL------------AGLGAGGAVSTIRSKMKTGFVNWAYPMQTTKVHLAAFYDEIKSL
ERQMERAIMADRRLLRKIDDGYLRAKASKSELIRANLRLVVSIAKKYTNRGLQFLDLIQEGNVGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLIRTSRYLVQERGYEPSPEEIAEKMEIPLEKVRRVLKIAREPISLETPIGEEEDSHLGDFIEDKKFMIPSEAAVSMNLSEQTRKV
LATLTPREEKVLRMRFGIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLRHPTRSKMLKHFIE-
>tr|D5RGU0|D5RGU0_9PROT RNA polymerase sigma factor RpoD OS=Roseomonas cervicalis ATCC 49957 GN=rpoD PE=3 SV=1
----------------------------------------------GDILAREAPEADRPPGLNPGRNWRADYGDEF-ESPETLDVRNEETEE-------
-AEEASEEEAETRGEAEAETGGNVNASLARSDDPVRMFLREMSGTDLLSREEEIALAQRIEAGRDAMLAGLCESPVTFTHIAAWKAALEQGQMPLRDVVE
LEAMAADAAA-PAAAGVETEEP------------------EEGEVVPHATLDEKMKPEVLAAFGAALEAHAALRALPVR-------SEAAQ------ARR
--QEMVGLFGALRLRPARLDMLVGEVRDIQRRLLALDGKALRLAVAARVEHEVVLRLWDGSDAAVQALVEAAQKVRSSAARAVRDLRDTLPQIRAAIVML
EQSSGLPAAELRRVCAEVGRGERDMRKAKEELTRANLRLVVHIAKRYRNRGLMFGDLIQEGNIGLMRAVDKFDWRRGFKFATYATWWVRQAITRSLADQA
RTIRVPVHMTETVGKVARMSRRFAQKAGREPTPEELAGELGMSVDKVRAVQRLAREPVSLENPIGEDDDGRLGDFIEDENAVMPFDAASRSAMRDATMRI
LSDLTPREERILRMRFGIGGENDHTLEEVGKTFNVTRERIRQIEAKALKKLQVSKRGKSLRSFLA-
>tr|G9ZYH3|G9ZYH3_9PROT RNA polymerase sigma factor RpoD OS=Acetobacteraceae bacterium AT-5844 GN=rpoD PE=3 SV=1
----------------------------------------------GNFHDGSWNRRDGETPAAAPSTWVGEDDELQ-PEAEDENV---ETEA-------
-SDES-EEGAVDENGAPVARDGNVDASLSRTDDPVRMFLREMSGTDLLTREAEIAVAQRIEAGRDDMLAGLCEHPATFTMLTSWYDAMVQCQVPLRDMVE
VEAMAAADAA---ASGETTAEG------------------EDADPAVHSTLEEKMKPEVLASFEALFAARTPLPTL--S-------GEAAD------ALK
--AELAGLLANVHLRPARLDMLVATVREAKRKLMALDGRASRAAQGCGVSHADFIAIWDGSEAAVEAVLKLEKP-----RRPVVDLKAELASVRAGIAAL
EQENGLAAARLRQVCDAVAQGERQMRRAKEELVQANLRLVVHIAKRYRNRGLMFGDLIQEGNIGLMRAVEKFDWRRGFKFGTYATWWVRQAITRSIADQS
RTIRVPVHMTETAAKVARTSRRFAQKAGREPTPEELANELGMSADKVRTVQRLAREPISLEAPIGEEDDGRLGDLIEDENAVMPFDAAARSSLRDAATNV
LSGLSPREERILRMRFGIGAENEHTLEEVGRTFNVTRERIRQIEAKALKKLQQSRRGRALRSFLA-
>tr|A0A059WZ86|A0A059WZ86_9BACT RNA polymerase sigma factor OS=uncultured bacterium PE=3 SV=1
-------------------------------------------------------------------------------------MRLEETDVT------
-YEEKYADAADESNDPAYES-EEAEAGDIDRTDLLKLYLREASRAPMLNAAGEVAGAKRIERARTRLMKLLSRSPIIAQYSLHLKQALLRGDESAADMIE
HVSGYDV---NPVPLS---------------------------------SLADQALAGVESAYNNLIPPPKPVQKRGSR-------KTERM------NKK
--YRSLKARMLVHLSRSIR--EIVFTPAAERRLSALVESGARIARSYEQKSGAGDSNNST----LN---GKTSTGK--GGNAAGANAGEFDVK-AAVSRV
INTGLALPLEMARLSKRVEAALSELNSAKQQMTEANLRLVISVARQFTRRGLPFLDLIQEGNVGLMRAVEKFDWRRGFRFSTYAMWWIRQSMARALDTQS
RVVRLPASELTLINKVARASRSIREETSSEATSDQIAEKLEVESERISEAIGFAQQTVTLDAPANDNGE-TAVNFIDTGDTGNPFIAALDWSRRTAIQRA
LAQLTPREAKILRMHYGLDGSEPRTLEEIGQDLSVTRERVRQIEAGAFAKLRELEVGDTLREFLT-
>tr|W9H4X7|W9H4X7_9PROT RNA polymerase sigma factor OS=Skermanella stibiiresistens SB22 GN=N825_11220 PE=3 SV=1
--------------------------------------------------------------------------------MTALEV--------------
----TAQPVADTDRAPAVRNRGNI-AFAEHSTDPVRLYLRDVAQHPLLTREQEVTLAQRMEAARSAIDDVIAVSPFTRTRLVQCLQGLREGSVNVGNIVD
VERFTRIGAEAEAAAGEEVLDE------------------DLEAVVDDADVAEPAALPVISAAELA---EKVIEALE-R-------IVAAD------ATD
--AAAAVLVRELPLSVDLRTELINAMRDVNRRIVGVDGRLARVVTTAGVKREVFLEAYLGSEGQPDWLAKRAAKGGKLAER-------EVDALFAELAEI
GQTVGLSIGEFRELSARLQRSQNDQIRTKEAFAKANLRLVAALARKHLNRGLPFLDLVQEGNIGLMTAIEKFDWRRGYKFSTYATWWIRQSMTRALADQG
RTIRMPAHACEALTKIRRCAVQLRLRRGIEPTNEDIATALAMPVEKVAELLRMAADAVSLDAPVGDDDDGRLGDFLEDSATTGAFDAIAAGSLREKLSEI
LDDLTPREADIIRRRFGLAGT-EETLEDIGRDYNVTRERIRQVEAKALQRLGRAKHARVLKTFLE-
>tr|A0A0D2VRG5|A0A0D2VRG5_9PROT RNA polymerase sigma factor OS=Skermanella aerolata KACC 11604 GN=N826_23790 PE=3 SV=1
--------------------------------------------------------------------------------MTALEI--------------
----TARPVADADRATTARTRGNI-AFAEHSTDPVRLYLRDVAQHPLLTREQEVMLAQRMEAARAAIDDVIAASPFACTRLMQCLQGLREESVALGSVID
LDRFARMGAEAAAHAD-DVVEE------------------IDETLVDADDGDVAGVPPAISAAEMA---IAVIEALE-R-------IEAVQ------A-D
--PAAAVLIRELPLSLDLRAELIAAMRDLNRRIVGVDGRLARVVMAGGVKREVFLEAYLGKEGEANWLATRAAKGGKLAER-------EVDALFAELTEI
TQTIGLPIGEFRELAARLQRSQNEQTRTKEAFAKANLRLVAALARKHLNRGLPFLDLVQEGNIGLMTAIEKFDWRRGYKFSTYATWWIRQSMTRALADQG
RTIRMPAHACEALTKIRRCAVQLRLRRGIEPTNEDIASALAMPVEKVAELLRMAADAVSLDAPVGDDDDGRLGDFLEDSATTGAFDAIAAGSLREKLSEI
LDDLTPREADIIRRRFGLAGT-EETLEDIGRDYNVTRERIRQVEAKALQRLGRAKHARVLKTFLE-
>tr|I4W0H0|I4W0H0_9GAMM RNA polymerase sigma factor RpoD OS=Rhodanobacter fulvus Jip2 GN=rpoD PE=3 SV=1
--------------------------NRWPLQSLILKGIREGSIPDLDVQAFFEDEEHRDEESEALRLALGEINVSTDERKVLRSEPQNE------ANDS
EEEELEDV----------I--AFYDEVTLSGDRCAKLYLRDVALFELLTREGEVVLAKRIEDGLGQVQASLAGFPQIVEFLLEEYEQHLSGKR-LSEVAG
FSDVDLAINA--------AVSKGD----QAALAEEEALDEASAGLDPHEVVVSRLRGRMAEEFRTLKRHMCALGMPKLW------SGQLSS--IGQPWAS
SDAIEREQQGLVAIERNLLLSIA---------------------DIRD----------------------------------------------------
-------------HHRTISGSFARASRAKKEMIEANLRLVLSIAKRYTNRGLQFLELVQEGNVGLMKAVDKFEHRRGYKFSTYATWWIRQAITRAIADQA
RTIRIPVHMIETINKLGAVSRRMQQQLGRPATPAELAPEMEVAEERIHKVLKIAAEPISDTPESEDD-P-TPWGSIEDKQTSSPVDLVGESGLKQSVNAA
ISELTAREAEVLRMRFGIDMDTDHTLEEVGKKFDVTRERIRQIEAKALRKLRHPARSGALRTFID-
>tr|A1S281|A1S281_SHEAM RNA polymerase sigma factor OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=Sama_0276 PE=3 SV=1
--------------------------VFEGFSKLFESCAHVGTLSETFLNDLYTDQITQLAEKVFIRQVLEVHGCVIDDHTFEGESLDSV------YEDH
DAASIDDA----------M--LLLDDLLYARDEPMGYYFASLPGKELLTREQEVDNGMRREAARLAIMEALSEVPFICELLAHLCQEALREHNSLQKVAE
LNT--LPSED--------FVEI-------KRAFMDEQEEPDDFVDTYPYEAGESEHPGVQDTFRSIVDIKTELKLPRV--------A-EQK--MGRELIS
QDKLERHAGAINRLQ-AQMQNIN---------------------QKTGIDL-------------------------------------------------
--------YSLQDIGSKIKKLQRDISAARDEMITFNLRLVLSVANKYLGRGLELADLVQEGNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQA
RIIRIPVHVNESLNKLISASKVLTHKFGRGPKISELSLILSMPETKVENLKQILVM----EPVAEAD-HNVD------WAAMSPEEEIIDDDRDTNIKDL
LKGLTDKEKKVLELRFGINAATELTLEEVGQQFDVTRERIRQIEAKSLKKLAHTSRSSHLAIFFG-
>tr|S5SQ46|S5SQ46_9PROT RNA polymerase sigma factor OS=Candidatus Nasuia deltocephalinicola str. NAS-ALF GN=rpoD PE=3 SV=1
---------------------------KSQLKIFLKKFFLKDFKFHIYYNYFLIFKKIDINDLDKILKIIKSLKIKIIEYIPENISLNIESKKIK-----
---------------------------KDICDDKVKEYLRIKKYLNILSKH---FI-K--------------------NLFLVSEIFVPSNKKSLKNFVN
KTDDLKSNLN--------IKSFFY--IKKLKNLKKRNKKKKNAINKYIYSNH----------YFNLNRSFACLNFLTKNISKYRL-----NN-RNNKAKI
LLKSLKNKFIIFKVTLRMLDDLYKIIELKFKPLNNLRYEIYDLSNISNISYIKFNFFFLKNGNNLKWIINLLDF-SKFGNSFKVYYKNYLKRKFLEIRII
EKKYSISIKKFFKMFNVVELYKLKIDLIRKKIITIKLKKLKNFFKIHNEENKFDDDASQEGIIGFLKGINNYNLFSSVKFENFLIYNIKRELFKYKYITN
KIIKLPNYIISIIKKINNFIKHHKGIYNVDPDIEKISENLSIEEKKVEGIINFYKNPISIEKLIDDNN--SLVDVINNRNFNFDE-KIFDEDLEDYLNEL
IMSLNNRSINILNMRFGLNMSRRYTLTEVGEIYNLSRERIRQIQNFVLKKIKDTSKTKKLLNFFN-