>seq_1
ISDKIPVVKVKMKDPNKGPQIKQWPLTNEKIEALTEIVERLEREGKVKRADPNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQ
IKKQVTVLDIGDAYFTIPLDPDYAPYTAFTLPRKNNAGPGRRFVWCSLPQGWILSPLIYQSTLDNIIQPFIRQNPQLDIYQYMDDIYIGSNLSKKEHKEK
VEELRKLLLWWGFETPEDKLQEEPPYTWMGYELHPLTWTIQQKQLDIPEQPTLNELQKLAGKINWASQAIPDLSIKALTNMMRGNQNLNSTRQWTKEARL
EVQKAKKAIEEQVQLGYYDPSKELYAKLSLVGPHQISYQVYQKDPEKILWYGKMSRQKKKAENTCDIALRACYKIREESIIRIGKEPRYEIPTSREAWES
NLINSPYLKAPPPEVEYIHAALNIKRALSMIKDAPIPGAETWYIDGGRKLGKAAKAAYWTDTGKWQVMELEGSNQKAEIQALLLALKAGSEEMNIITDSQ
YVINIILQQPDMMEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVDKLCQTMMIIE
>tr|B2BWH7|B2BWH7_9RETR Pol protein OS=Feline immunodeficiency virus PE=4 SV=1
-SDKLPVVKVKMKDPNKGPQIKQWPLSREKIEALTEIVYRLESEGKVKRADPNNPWNTPIFAIKKKSGKYRMLIDFRCLNDLTEKGAEVQLGLPHPAGLQ
DREQVTIMDISDAYFTIPLDKDYQPYTAFTLPKVNNQGPGERFIWCSLPQGWVLSPLIYQSTLNNILKPFRDKHPNIDLYQYMDDIYIGSDLSKKEHKQI
VEELRSLLLWWGFETPEDKLQEKPPFHWMGYELNPKKWTIQTKELKIPEKPTLNELQKLVGVINWSSQIIPGLKIKALTNMMKGGQRLDSVREWTKEARE
EAEEAKIAIEQHTQLGYYDPKKEIYAKLSIIGPHSTGYQVYQKEPEKILWYGRMNRQKKKAENTCDIALRAIYKIKEEAIIRLGVEPIYEIPCTREAWES
NLLETPYLKAIPPKVEFIHAALMMQKSLAMIKEEPIPNIETWYIDGGRKRGQPARAAYWTNKGKWEIMTIEGSNQRAEVMALLMALKAGGEEMNIITDSQ
YIINVLKQKPDLMEGIWQEVIEEMEKKIGIFIDWVPGHKGIPGNTEVDQLCQTMM---
>tr|B2BWI2|B2BWI2_9RETR Pol protein OS=Feline immunodeficiency virus PE=4 SV=1
-SDKLPIVKVKMKDPSKGPQIKQWPLSREKIEALTEIVYRLEKEGKVKRADPNNPWNTPVFCIKKKSGKYRMLIDFRCLNDLTEKGAEVQLGLPHPAGLK
ERKQVAILDISDAYFTIPLDKDYQPYTAFTLPKLNNQGPGERFVWCSLPQGWVLSPLIYQSTLNNILKPFREKHPEIDLYQYMDDLYVGSDLSKKEHKAI
VEELRQLLLWWGFETPEEKLQEEPPFKWMGYELYPKKWTIQTKELKIPDIPTLNELQKLVGIINWSSQIIPGLKIKALTNMMKGNQALDSIREWTPEARQ
EAEEAKLAIEQHTQSGYYDPKKEVYAKLSIVGPHSIGYQVYQKEPEKVLWYGRMNRQKKKAENTCDIALRAIYKIKEESIIRIGVEPIYEIPCSREAWES
NLISTPYLKASPPKVEFIHAALMMQKSLAMIKEDPIPDTETWYIDGGRKKGQPARAAYWTDKGRWEVMQLEGSNQKAEIMALLMALKAGGKEMNIITDSQ
YIINVLKQKPDMMEGIWQEVLEEMEKKTGLYIDWVPGHKGIPGNMEADQLCQTMM---
>tr|P90246|P90246_9RETR Pol polyprotein OS=Feline immunodeficiency virus GN=pol PE=4 SV=1
-SNKIPIVKVKMKDPSKGPKIKQWPLSKEKIEALTEIVYRLEKEGKVKRADPNNPWNTPIFCIKKKSGKWRMLIDFRTLNELTEKGAEVQLGLPHPAGLQ
ERKQVTVLDIADAYFTIPLDPDYAPYTAFTLPKINNSGPGERFVWCSLPQGWVLSPLIYQSTLNNILKPFREQHPEIDLYQYMDDIYIGSDLGKKEHKQI
VEELRKLLLWWGFETPEDKLQEQPPYKWMGYELYPRKWTIQTKELIIPEEPTLNELQKLVGIINWSSQIIPGLRIKALTNMMKGNQALDSKRRWTEEAKK
EAEEAKLAIEQHTQLGYYDPQQQLHAKLSIVGPHCIGYQVYQKGPDKILWCGRMNRQKKKAENTCDIALRAIYKIREESIVRLGKEPIYEIPCSREAWES
NLINTPYLKACPPQVEYIHAAIMIQRSLSMIKEEPIRGAETWYIDGGRKKGQSAKAAYWTDKGKWEVMQIEGSNQRAEVMALLMALRSGGEEMNIVTDSQ
YILNILRQKPDLMEGLWQEILEEIEKKVAIFIDWVPGHKGIPGNTEVDNLCQTMM---
>tr|Q699V1|Q699V1_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
-AQKLEPMKVQLKPGKELPKLKQWPLTREKLEALRAIVSDMLEKGQLEKASPTNPYNTPVFVIQKKDLKWRMPMDFRKLNEATQDFWEVQLGIPHPGGLS
-TKRMTVLDLKDAYYTVPLDEEFRQYTAFTVPSINNSSPGERYQFKVLPQGWKGSPTIFQATVNQILQPIREKNSDIIIVQYMDDLLVGSNRSEKEHGQI
VSEIVKSLLAVGFSIPPEKWQDKFPLQWLGYTLHPDKWSLQKVQLPITESPTVNELQKIIGVLNWASQIYPGIKCKALSKCIRGAKALTDIVELTEEAEA
EMAENREILKVEQTGSYYQPEKPLEAHISKLGQQQWGYIIKQGPQEKPLITGKTGKAYATHHNDYQALAQLMNKIGIQALWIWGKIPEFHLPVKREEWEK
WWTDHWQ-ATWLPEVKCVHTPILVRWYYNLV-SEPVE-AETFYVDGAARNSKEGQAGYITDRGKQTLKRLETTNQKAELEAVLMALQDSGPEVNIVTDSQ
YALGILMNCPTSEHPVVEQIMQKAMEKEKIYITWVPAHKGIGGNQEVDQLVSKGI---
>tr|Q03261|Q03261_SIV Pol protein OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
-QTALEPVKVSLKPDKELPRLKQWPLSVEKLEALKAIVEDMLKAGQLEKASPTNPYNTPVFVIRKKDKKWRMLIDFRKLNEATQDFFEVQLGIPHPGGLK
-RQKLTIIDLKDAYYSVPLDKEFRPYTAFTVPSINNASPGERYQFTVLPQGWKGSPTIFQSTINQILQPFRKKYSDLTLIQYMDDLLIGTDRSEKAHQEI
VQQIVTALLKVGFKVPKEKWQDQYPMQWLGYTLHPDKWQLQKIELPIDDEITVNQLQKLIGVLNWASQIYSGIKTKELCKCIRGTKQLTEVLTLTEAAEA
ELEENRQILKEEQAGSYYDPKKPLEAHITKLGSQQWGYMIKQEQKGPPLITGKTAKTFAAHSNDYQSLAQLLNKIGIQSLWYWGKVPTFHLPVKREEWEK
WWTDYWQ-ATWVPEVKFISTPPLVRWYYNLV-PEPIPEAVTFYVDGAARDSKTGNAGYVASDGTQRVQYLETTNQQAELEGLLMALQDSKDKVNIVVDSQ
YSYGILMTCPTTEHPIVEQIIQEAIKKEAIYVTWVPAHKGIGGNEAVDKLVSKGI---
>tr|E9KU73|E9KU73_9RETR Pol polyprotein (Fragment) OS=Equine infectious anemia virus GN=pol PE=3 SV=1
-QKEITPREIKLKTGTVGPKVPQWPLTKEKLLGAKEIVKKLLDEDKISEASDDNPYNSPIFVIKKKSGKWRLLQDLRELNKVVQVGTEISRGLPHPGGLI
KCNHMTVLDIGDAYFTIPLDPKFRQYTAFTVPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQDILQAFRERHPDVQLYQYMDDLFIGSNESKRQHKEL
VEELRAILLEKGFETPEDKLQEEAPYNWLGYQLSPGNWKVQKMQLELVKEPTLNDVQKLMGNITWMSSGVPGLTVKQIAATTKGCLDLNQKVVWTEEAQK
ELEENNKKIQEAQGLQYYNPEEEVICEIEITKNYEATYIIKQSQG--ILWAGKKIMRANKGWSAAKNLMLLLQHVATESIVRIGTCPKFKVPFTKEQVKW
EMEKGWY-YSWLPDMIYSHQVVHDDWKLKLV-EQPT-SGITIYTDGGKQNE-EGVAAYVTSNGKTKQKRLGVTHQTAERIAIQMALEDTEELVNIVTDSY
YCWKNITEGLGGPDSPWWPIIQNIRAKEMVYFAWVPGHKGIYGNQLADEATKIQI---
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22) GN=pol PE=1 SV=1
-QKEIKFRKIELKEGTMGPKIPQWPLTKEKLEGAKEIVQRLLSEGKISEASDNNPYNSPIFVIKKRSGKWRLLQDLRELNKTVQVGTEISRGLPHPGGLI
KCKHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSINHQEPDKRYVWNCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFVGSNGSKKQHKEL
IIELRAILLEKGFETPDDKLQEVPPYSWLGYQLCPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIWTEEAQK
ELEENNEKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQG--ILWAGKKIMKANKGWSTVKNLMLLLQHVATESITRVGKCPTFKVPFTKEQVMW
EMQKGWY-YSWLPEIVYTHQVVHDDWRMKLV-EEPT-SGITIYTDGGKQNG-EGIAAYVTSNGRTKQKRLGVTHQVAERMAIQMALEDTRDQVNIVTDSY
YCWKNITEGLGGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAKIQI---
>tr|A0A097PUE8|A0A097PUE8_9RETR Pol protein (Fragment) OS=Equine infectious anemia virus GN=pol PE=3 SV=1
-QKEIVPRKIKLKTGTTGPKIPQWPLTKEKLLGAKEIVQRLLLEGKISEAEDNNPYNSPIFVIKKKSGKWRLLQDLRELNKMVELGTEISRGLPHPGGLI
KCKQMTVLDIGDAYFTIPLDPEFRPYTAFTVPSINHQEPDKRYIWNCLPQGFVLSPYIYQKTLQEILQAFRERHSEVQLYQYMDDLFIGSNVSKKQHKEL
VKELRAILLEKGFETPDDKLQEEPPYNWLGYQLCPDNWKVQKMQLELVKEPTLNDVQKLMGNITWMSSGVPGLTVKQIAATTKGCLDLNQKVIWTKEAQI
ELEENNEKIKNAQGLHYYNPEEETICEIEITKNYEAIYIVRQSQK--ILWAGKKIMRANKGWSAAKNLMLLLQHVATESITRIGVCPKFKVPFTKEQVIW
EMQKGWY-YAWLPEIIYSSQVVFDDWKLKLV-EQPT-SGITIYTDGGKQNG-EGIAAYITSKGKKKQKLLGVTHQIAERIAIQMALEDSEEQINIVTDSY
YCWKNITEGLGGPDSPWWPIIQNIKTKEAIYFAWVPGHKGIYGNQLADEATKMQI---
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2) GN=pol PE=3 SV=1
-QEKIPIVKVRMKDPTQGPQVKQWPLSNEKIEALTDIVERLESEGKVKRADPNNPWNTPVFAIKKKSGKWRMLIDFRVLNKLTDKGAEVQLGLPHPAGLQ
MKKQVTVLDIGDAYFTIPLDPDYAPYTAFTLPRKNNAGPGRRYVWCSLPQGWVLSPLIYQSTLNNILQPFIKQNSELDIYQYMDDIYIGSNLNKKEHKQK
VEELRKLLLWWGFETPEDKLQEEPPYKWMGYELHPLTWSIQQKQLEIPERPTLNELQKLAGKINWASQTIPDLSIKELTNMMRGDQKLDSIREWTVEAKR
EVQKAKEAIETQAQLNYYDPNRGLYAKLSLVGPHQICYQVYQKNPEHILWYGKINRQKKKAENTCDIALRACYKIREESIIRIGKEPVYEIPASREAWES
NLIRSPYLKAPPPEVEFIHAALSIKRALSMIQDAPIIGAETWYIDGSRKQGKAARAAYWTNTGKWQIMEIEGSNQKAEVQALLLALKAGSEEMNIITDSQ
YILNILNQQPDLMEGLWQEVLEQMEKKIAIFIDWVPGHKGIPGNEEVDKLCQ-GI---
>tr|D0FH98|D0FH98_9RETR Polymerase (Fragment) OS=Feline immunodeficiency virus GN=pol PE=4 SV=1
-QDKIPIVKVKMKDPNKGPQIKQWPLSNEKIEALTEIVERLEREGKVKRADPNNPWNTPVFAIKKKSGKWRMLIDFRELNKLTEKGAEVQLGLPHPAGLQ
MKKQVTVLDIGDAYFTIPLDPDYAPYTAFTLPRKNNAGPGKRYVWCSLPQGWVLSPLIYQSTLDNIIQPFIKQNPELDIYQYMDDIYIGSNLNKKEHKQK
VEELRKLLLWWGFETPEEKLQEEPPYKWMGYELHPLTWTIQQKQLDIPERPTLNELQKLAGKINWASQTIPELSIKELTKMMRGDQNLESRREWTPEARK
EVQRAKEAIEMQAQLGYYDPTRELYAKLSVVGPHQLSYQVYHKNPETILWYGKMSRQKKKAENTCDIALRACYKIKEESIVRLGKEPKYEIPTTKEAWES
NLINSPYLKAPPPEVEYIHAALNIKRALSMIRDTPIVGAETWYIDGGRKQGKAAKAAYWTNTGKWQIMELEGSNQKAEVQALLLALKSGPEEMNIITDSQ
YIINIINQQPDLMEGIWGEVLEEGRNKKIAFIDWVPGHKGIPGNEEVDKLCQ-GI---
>tr|B0LAS9|B0LAS9_9RETR Pol (Fragment) OS=Feline immunodeficiency virus PE=3 SV=1
-MDKIPIVKAGMKDPNNGPRVKQWPLSKEKIEALTEIVERLEKEGKVGRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNAETEKGAEVQLGLPHPSGLQ
KRKNVTVLDIGDAYFTIPLDPDYQPYTAFTLPSKNNQSPGRRYIWKSLPQGWVLSPLIYQSTLDNILQPFRQKEKEIDIYQYMDDIYIGSDKEMKVHRKI
VQELRELLLWWGFETPEDKLQEAPPYKWMGFELHPNGWKIQTAKLEIPENPTLNELQKLIGKINWATQIIGGLLIKNLTEMMKGNPDLNSKRSWTSEARQ
EAEQARKAIENLPNGNYYDKNKEIYAILSINGPLQISYMVYQLEGKLPLWYGRMNRIKRKIENTCDIAMRAMNKIKEESIIRLGKEPIYQIPCSKENWES
YIQTSKYLKNVPPQVEFINSSLMIERHLACLVEDPIQDAETWYIDGGRKKGQKARAGWWKNNQEWQIMEIEGSNQVAEAQALNMALKSGPEKMNIITDSQ
YVYNMIRARPEPSDPLWKEIIEELHKKEKIFLDWVPGHKGIPGNKEIDELIQ-GM---
>tr|A0A059UEP5|A0A059UEP5_9RETR Pol protein (Fragment) OS=Feline immunodeficiency virus GN=pol PE=3 SV=1
-NTKIPIVKAKLKDSNKGPQIKQWPLTNEKIEALTEIVERLEREGKVKRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNKLTIKGAEVQLGLPHPAGLR
QRKQVTVLDIGDAYFTIPLDPEYQPYTAFTLPNKNNQGPGRRYVWCSLPQGWVLSPLIYQSTLDNILTPWKKKHPEIDLYQYMDDIYIGTDLSKIEHKRI
VEELRQLLLFWGFETPEDKLQEEPPYKWMGYELHPNKWTIQSKKLEIPEIPTLNQLQKLVGVINWATQNVGGIKIKALTDLMKGNQQLDSYRQWTPEALK
EIKIAKEAIDNLQDMSYYDPEKVLYCKFSIVGIHQIAYMVYQEQG--KLWLGRMNRQKKKVENSCDMVLRAINKVKQESIIRLGKEPIYQIPCSREIWDA
YLITSNYLKNPPPEIEFIHASLMLSRTLNMITEEPIPNVETWFIDGGRKTGRKAISAYWTSNGSKRYEYIEGSNQMAEVNALKMALKDGPLEMNIITDSQ
YIMNIIKQFPDCLSGIWQEVIELLQTKLAIFLDWVPGHKNIPGNKEVDQICQ-GI---
>tr|A0A059UDG5|A0A059UDG5_9RETR Pol protein (Fragment) OS=Feline immunodeficiency virus GN=pol PE=3 SV=1
-NTKIPIVKAKLIDPTKGPQIKQWPLTNEKIEALTEIVERLEQEGKVKRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNKLTIKGAEVQLGLPHPAGLQ
QRKQVTVLDIGDAYFTIPLDPEYQPYTAFTLPNKNNQGPGRRYVWCSLPQGWVLSPLIYQSTLDNILTPWRRKHPEVDLYQYMDDIYIGSDFNKRKHKEL
VENLRQLLLFWGFETPEDKLQEEPPYKWMGYELHPTSWIIQKKGLEIPEIPTLNQLQKIVGVINWATQNIGGIKIKELTELMKGSQQLDSYRQWTPEALR
EVEAAKEAIDKLQDMKYYDPEKLLYCKFSIVGVHQIAYMVYQESG--ILWLGRMNRQKKKAENSCDIVLRAINKVKQECIIRLGKEPIYQIPCTREIWDA
YLTTSGYLKNPPPEVEFIHASLMLSRILSMITEEPIPNVETWFIDGGRKAGKKAISAYWTSEGLKKYEYIEGSNQMAEVNALKMALQDGPLEMNIITDSQ
YIMNVIKQYPDCLSGIWQEVIKLLQTKLAVFLDWVPGHKNIPGNKEVDQLCQ-GI---
>tr|A0A059UHZ7|A0A059UHZ7_9RETR Pol protein (Fragment) OS=Feline immunodeficiency virus GN=pol PE=3 SV=1
-NTKIPIVKAKLIDPNKGPQIKQWPLTNEKIEALTXIVEKLEREGKVKRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNKLTIKGAEVQLGLPHPAGLK
QKAQVTVLDIGDAYFTIPLDPEYQPYTAFTLPNKNNQGPGRRYVWCSLPQGWVLSPLIYQSTLDNILRPWRKKHPEVDLYQYMDDIYIGTDLSKNKHKSL
VEELRQLLLFWGFETPEDKLQEEPPYKWMGYELHPTNWTIQKKGLEIPEIPTLNQLQKIVGVINWATQNVGGIKIKALTDLMKGNQQLDSYRQWTPEALE
EVKLAKEAIDNLHNMSYYNDEKPLYCKFSILGIHQVAYVVYQDQG--NLWAGRMNRQKKKAENSCDIVLRAINKVKQECIIRLGKEPIYQIPCSREVWES
YLTTTIYLKNPPPEIEFIHASLMLARTLSMITENPIPNVETWFIDGGRKVNKKAISAYWTSSGLSKFEYLEGSNQMAEVNALRMALRDGPLEMNIITDSQ
YIMNVIKQFPDNLSGIWQEVLELLRDKQLIFLDWVPGHKNIPGNKEVDQICQ-GI---
>tr|A0A059UDD5|A0A059UDD5_9RETR Pol protein (Fragment) OS=Feline immunodeficiency virus GN=pol PE=3 SV=1
-NNRIPIVKAKLKDPSKGPQIKQWPLTNEKIEALTEIVERLEREGKVKRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNKLTIKGAEVQLGLPHPAGLK
QKEQITVLDIGDAYFTIPLDPEYQPYTAFTLPNKNNQGPGRRYVWCSLPQGWVLSPLIYQSTLDNILQPWRRAHPDVELYQYMDDIYIGTDLNKTKHKEL
VEELRQLLLFWGFETPEDKLQEEPPYKWMGYELHPTKWTIQSKSLEIPEIPTLNQLQKIVGIINWATQNVGGIKIKALTELMKGNQQLDSCRQWTSEALE
EVKIAREAINNLQDMCYYDSNKPLYCKFSIVGVHQIAYVVYQEQG--NLWLGRMNRQKRKAENSCDIVLRAINKVKQECIVRIGKEPIYQIPCSKEIWEA
YLITSNYLKNPPPEIEFIHASLMLARTLSMITEEPIPETETWFIDGGRKAGRRAISAYWTSNGLSKFEYIEGSNQMAEVNALKMALTDGPLEMNIITDSQ
YIMNVIKQFPDSLSGIWQEIIDLLQQKILVFLDWVPGHKNIPGNKEVDQICQ-GI---
>tr|A0A0H4LKC7|A0A0H4LKC7_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPVDTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICAEMEKEGKITKIGPENPYNTPVFAIKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDEGFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILDPFRTQNPEIVIYQYMDDLYVGSDLEIGQHREK
VEELRKHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPDKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTDIVPLTAEAEL
ELEENREILKEPVHGVYYDPSKELIAEVQKQGLDQWTYQIYQEPF-KNLKTGKYAKRRTAHTNDVRQLAEVVQKIAQESIVIWGRTPKFRLPIQRETWET
WWTDYWQ-ATWIPDWEFVNTPPLVKLWY-QLEKEPIIGAETFYVDGAANRETKGKAGYVTDKGRQKVITLTTTNQKTELEAIYLALQDSGVEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEQLIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|A0A059UDU9|A0A059UDU9_9RETR Pol protein (Fragment) OS=Feline immunodeficiency virus GN=pol PE=3 SV=1
--DKIPIVKAKMKDPNNGPRVKQWPLSSEKIAALTEIVERLEKEGKVGRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNAKTEKGAEVQLGLPHPGGLQ
KRKNVTVLDIGDAYFTIPLDPDYQPYTAFTLPSKNNQSPGRRYIWKSLPQGWILSPLIYQSTLDNILQPFRSKGKEIDIYQYMDDIYIGSDKEIKTHRQI
VQELRDLLLWWGFETPEDKLQEKPPYKWMGYELHPNGWKIQTTKLEIPENPTLNELQKLVGKINWATQIIGGIPIKHLTEMMKGSTDLNSKREWTQKARE
EAELAKVAIENLPNGNYYDPQKELYAILSITGPLQISYMVYQTEG-IKLWYGRMNRIKRKIENSCDIVLRAINKIREEAIIRVGKEPIYQIPSSKENWES
YLITSYL-KNSPPQVEFINASLMIERHLSCLMEEPVEEAETWYIDGGRKKGQKAKAGWWKNNQEWQIME-IGSNQIAEAQALNMALKAGPEKMNIITDSQ
YVYNMVMSRPEID-PLWKEIIEELQRKEAIFIDWVPGHKGIPGNKEIDELVQCGIII-
>tr|Q20DL2|Q20DL2_9RETR Pol protein (Fragment) OS=Feline immunodeficiency virus PE=3 SV=1
--DRIPIIKAKMKDPNNGPKVKQWPLSQEKIMALTEIVERLEKEGKVKRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNAKTEKGAEVQLGLPHPAGLQ
RRKNVTVLDIGDAYFTIPLDPDYQQYTAFTLPSKNNQGPGRRYVWKSLPQGWVLSPLIYQSTLDNILHPFRKKKNEIDLYQYMDDIYIGSDIPIKQHRKV
VLELRQMLLWWGFETPEDKLQESPPFKWMGYELHPQGWKIQTTKLEIPEYPTLNELQKLIGKINWATQIIGGLPIRNLTDMMKGDTELNSRREWTPEARQ
EAEEAKKAIENLPNGNYYDKEKELYAILSINGPLQISYMVYQLEG-IKLWYGRMNRIRRKLENTCDLALRAINKIKEEAIIRLGKEPIYQIPCSNENWES
YLMSSYL-KSIPPTVEFINSSLMIERHLACIKGEPIEGVETWYIDGGRKKGQKARAGWWKNNQEWQIME-LGSNQTAEAQALNMALKAGPEKMNIITDSQ
YVYNMVMARPETD-PLWKEIIEELQKKEAIFLDWVPGHKGIPGNKEVDEIVQCGLII-
>tr|Q0ED55|Q0ED55_9HIV1 Pol (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIDTVPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVFAIKKNSDRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFKTKNPEMVIYQYMDDLYVGSDLEIGQHRAK
IEELRAHLWSWGFFTPDWKHQKEPPFHWMGYELHPDKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVPLTEEAEL
ELAENREILKTPVHGVYYDPSKELVAEVQKQGQDQWTYQIFQEPF-KNLKTGKYTRKRSAHTNDVRQLTEVVQKIATESIVIWGKTPKFRLPLQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWY-QLEKEPIVGAETFYVDGAASRETKGKAGYVTNRGRQKVVSLTTTNQKTELHAIYLALQDSGPEVNIVTDSQ
YALGIIQAQPDSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|I6YYA7|I6YYA7_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPVFAIKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTHILEPFRAKNPEIVIYQYMDDLYVGSDLEIGQHRTK
IEELRGHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKSSWTVNDIQKLVGKLNWASQIYPGIRVKHICKLLRGAKTLTDVVSLTAEAEL
EMAENREILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEPH-KNLKTGKYAKRRSAHTNDVKQLTDVVQKIATEGIVIWGRVPKFRLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWY-QLETDPIVGVETFYVDGAANRETKGKAGYVTDRGRQKVVSLTTTNQKTELQAIQLALQDSGPEVNIVTDSQ
YALGIIQALPDSESELVNQIIEQLIQKEKVYLSWVPAHKGIGGNEQVDKLVSTGIRK-
>tr|B0LAQ5|B0LAQ5_9RETR Pol (Fragment) OS=Feline immunodeficiency virus PE=3 SV=1
-SDKIPIVKAKMKDPNNGPKVKQWPLSAEKIAALTEIVKRLKKEGKVGRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNAKTEKGAEVQLGLPHPGGLQ
KRKNVTVLDIGDAYFTIPLDPDYQPYTAFTLPSKNNQGPGRRYIWKSLPQGWILSPLIYQSTLDNILQPFRDKNKEIDIYQYMDDIYIGSDKELKNHRKI
VQELRDLLLWWGFETPEDKLQEKPPYKWMGYELHPNGWKIQTTKLEIPEYPTLNELQKLVGKINWATQIIGGLPIKHLTDMMKGDTNLNSRREWTQEARK
EAEEAKVAVENLPNGNYYDPQKELYAILNITGPLQISYMVYQLEG-VPLWYGRMNRIKRKIENTCDIALRAINKIREESVIRVGKGPIYQLPCSKENWET
YLTTSRL-KNGPPIVEFVNASLMIERLSCLV-EDPIEEAETWYIDGGRKKGQK-RAGRWKNNTEW-QIMEIGSNQVAEAQALNMALKAGSERMNIITDSQ
YVYNMVMSRPEL-DPLWKEIIEELQKKEAIFIDWVPGHKNIPGNKEVDELVQCGIVV-
>tr|F1K827|F1K827_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
-ISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
QKKSVTVLDVGDAYFSVPLYEDFRKYTAFTIPSANNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGEHRTK
IEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVVPLTTEAEL
ELAENREILREPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPF-KNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEI
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIVGAETFYVDGAANRETKGKAGYVTDKGRQKVINLTTTNQKTELQAIHLALQDSGLEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSNGIRR-
>tr|O56317|O56317_9PLVG Pol (Fragment) OS=Simian-Human immunodeficiency virus GN=pol PE=3 SV=1
-IAKVEPVKVALKPGKDGPKLKQWPLSKEKIVALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKKNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLA
KRKRITVLDIGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANPDVTLVQYMDDILIASDRTDLEHDRV
VLQSKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEA
EYEENKIILSQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQED--KILKVGKFAKIKNTHTNGVRLLAHVIQKIGKEAIVIWGQVPKFHLPVEKDVWEQ
WWTDYWQ-VTWIPEWDFISTPPLVRLVFNLV-KDPIEGEETYYTDGSCNKQSKGKAGYITDRGKDKVKVLETTNQQAELEAFLMALTDSGPKANIIVDSQ
YVMGIITGCPTSESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEIDHLVSQGIRQ-
>tr|E1AQC0|E1AQC0_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEKDGKISKIGPENPYNTPVFAIRKKSTRWRKIVDFRELNKRTQDFWEVQLGIPHPGGLE
KKKSVTILDVGDAYFSIPLDPEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPEIVICQYVDDLYVASDLEIEQHRTK
IKELRRYLWKWGFYTPDEKHQEEPPLHWMGYELHPDKWTVKPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKHLCKLLRGAKALTEVVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQSQWTYQIYQEP-FKILKTGKYTRTRSAHTNDVKQLTEAVQKIATESIVIWGKIPKFKLPIQKETWGA
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIVGAETFYVDGAARETKLGKAGYVTDKGRQKVVHLTTTNQKTELQAIHLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEELIKKEKVYLSWVPAHKGIGGNEQVDKLVSNGIRK-
>tr|E1APM1|E1APM1_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKSNRWRKLVDFRELNKRTQDFWEVQLGLPHPGGLK
KKKSVTVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILKPFREQNPDIVIYQYMDDLLVGSDLEIGQHRTK
IEELRQHLLRWGLFTPDEKHQKDPPFLWMGYELHPDKWTVQPIMLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIALTKEAEL
ELAENREILKEPVHGVYYDPSKELIAEIQKQGEGQWTYQIYQEP-FKNLRTGKYTRTKSAHTNDVRQLTEAVQKITTESIVIWGKIPKFKLPIQKETWDT
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPIAGAETFYVDGASRETKLGKAGYVTNKGRQKVVSLTTTNQKTELQAIYLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRK-
>tr|E1AQD9|E1AQD9_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGIDGPRVKQWPLTEEKIKALVEICKELEEEGKISRIGPENPYNTPVFAIKKKSTKWRKVVDFRELNKRTQDFWEVQLGIPHPAGLR
KNKSVTVLDVGDAYFSIPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVICQYVDDLYVASDLELGQHRKK
IEELRQHLWKWGFYTPDRKHQQEPPFRWMGYELHPDKWTVQPIVLPEQESWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLKGAKALTEVITLTREAEL
ELAENREILKEPVHGVYYDPSKDLIAEVQKQGQGQWSYQIYQEP-FKILKTGKYARTRGAHTNDVKQLADAVQKITQESIVIWGKAPKFKLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIIGAETFYVDGAARETKLGRAGYVTDRGRQKVISLTTTNQKTELQAIYLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESETVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSNGIRK-
>tr|E1APX6|E1APX6_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICNDMEKEGKISKIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDEEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSTTKILDPFRAKNPDIVIYQYMDDLYVGSDLEIGQHRTK
VEKLREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDCWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTEIVPLTAEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGYGQWSYQIYQEP-FKNLKTGKYARMRSAHTNDVKQLTEAVQKIAQECIIIWGKIPKFKLPILKETWDT
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPIAGAETFYVDGAARESKKGKAGYVTDRGRQKAVPLTTTNQKAELQAIQLALQDSGSEVNIVTDSQ
YALGVIQAQPDSESELVNQIIEQLIKKEKIYLSWVPAHKGIGGNEQVDRLVSTGIRK-
>tr|Q9Q086|Q9Q086_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--EKIPITKVHLKPGCDGPRVKQWPLSKEKIEGLQAICDRLEKEGKISPVDPGNPYNTPIFAIKKKKNEWRKLIDFRKLNELTQDFHELQLGIPHPAGIK
KCKQITVVDIGDAYFSIPLDPDYRQYTAFTIPSLNNQEPGKRYQYNVLPQGWKGSPCIFQETVSGLLAEFRKLNPDILLYQYMDDLFIGSDREKEGHSQA
VKELRELLITWNLETPEKKFQDKPPYHWMGYVLHPDRWEIERVKLPEIDKTTVNEIQKLVGVLNWAAQLYDGIRTKELCKLIRGVKPLEQLVTWTEEALE
EYETNKTILKEKVQGAYYDPSKELVVRVQQNKKGVITFQWRQGN--AILRAGRYQRQKSAHMNPLQQLAEAVQKIGKESIVIWGFVPKIQVPVTRETWEN
WWINFWQ-VTWIPDLEFISTPQLEQEWYSLE-AEPIEGTDTYYVDGAARVGKTGKAGYITQSGKEKIKELQTTNQQAELEAVLLALQDSKSTVNIVTDSQ
YVMKVLSQRPTTEHPIVKNIIKELQKKDAVYLGWVPAHKGIGGNQEIDQLVIKGIRQ-
>tr|Q9Q0A2|Q9Q0A2_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--DKIPITKVKLKPGCDGPRVKQWPLSKEKIEGLQAICDRLEKEGKISKADAGNPYNTPIFAIKKKKNEWRKLIDFRQLNALTQDFHEVQLGIPHPAGIK
KCKQVTVVDIGDAYFSIPLDPDYRQYTAFTVPSINNQEPGRRYQYNVLPQGWKGSPCIFQATVAGLLSEFRKLNPDIILYQYMDDLFIGSDRDKKGHDQA
VKELRDLLVTWNLKTPEKKFQAEPPYHWMGYVLHPDRWEIEKTKLPDIDKTTVNNIQKLVGVLNWAAQLYEGIRTKELCKLIRGVKALDEVVTWTDAALE
EYEQNQQILKEKLQGAYYDPTKELVVRVQQSKKGIITFQWRQGN--SILRAGRYQRQKSAHTNPLQKLAEAVQKIGKESIVIWGHVPKIQVPVTREVWDQ
WWSDHWQ-VTWIPELEFISTPQLEQEWYSLE-AEPIEGVDTYYVDGAAKVGKTGKAGYVTQSGKEKVKELTTTNQQAELEAVLLALRDSKSRVNIVTDSQ
YVIKVLSQRPTTEHPVVKQIIEECKKKDQVYLGWVPAHKGIGGNQEVDHLVSKGIRQ-
>tr|Q9WPP5|Q9WPP5_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--EKIPITKVKLKEGAAGPKVKQWPLSREKIEGLQKICDRLEAEGKISRADPGNPYNTPIFAIKKKKNEWRKLIDFRVLNGMTQDFHELQLGIPHPAGLK
KCKQITVVDVGDAYFSIPLDPDYRKYTAFTIPSVNNQAPGKRYVYNVLPQGWKGSPCIFQGTVASLLEKFRRQYPEVQLYQYMDDLLIGSDYEKKKHEEI
VKQLRQLLMEWNLETPEKKYQGEPPYKWMGYILHPDRWEIEKIKLPPLEEPTVNDIQKIVGVINWASQLYEGLRTKELCKLIRGNKPLAEKVKMTEEARE
EYQSNQEVLQESVSGSYYEPDKELICRVQKVKQGILTFQWLQGK--QVLRVGRYQKRGAAHENPCQQLAAALQKIGRESIVIWGFVPKIQVPIQREIWSQ
WWADYWQ-CTWIPELEFVSTPKLEQEWYTLA-TEPVPG-DTYYVDGAAKLEKRGKAGYITQGGRSRVKKLETTNQQAELEAIKMALEDSRSSVNIVTDSQ
YALRLLSKRPTTDSELVKEIVELIRQKDQVYLGWVPAHKGIGGNQEIDQLVSQGIRQ-
>tr|O90273|O90273_SIV Polymerase (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--DKIPITKVSLKPGCDGPRVKQWPLSKEKIEGLQAICDRLEKEGKISPVDPGNPYNTPIFAIKKKKNEWRKLIDFRKLNELTQDFHELQLGIPHPAGIK
KCKQITVVDIGDAYFSIPLDPNYRKYTAFTIPSLNNQEPGKRYQYNVLPQGWKGSPCIFQGTVAGLLSEFRKLNPDMIIYQYMDDLFIGSDRERKGHDQA
VKELRELLMTWNLETPEKKFQAEPPYHWMGYVLHPDRWEIEKIKLPEMDKTTVNQIQKLVGVLNWAAQLYDGIRTKELCKLIRGVKPLEEIINWTEEALE
EYGQNKEVLKEKMQGAYYDPEKELIVRVQQNKKGIITFQWRQGN--NILRAGRYQRQKAAHTNPLQKLVEAIQKIGKESIVIWGFVPKIQVPVTREVWEH
WWSDHWQ-VTWIPDLEFISTPQLEQEWYIWE-AEPIIGVDTYYVDGAAKVGKTGKAGYITQSGKEKVKELTTTNQQAELEAVLMALQDSNSKVNIVTDSQ
YVMKILSQRPTTEHPIVKDIIEQCKQKDQVYLGWVPAHKGIGGNQEVDHLVSKGIRQ-
>tr|P89904|P89904_SIVTA Pol protein (Fragment) OS=Simian immunodeficiency virus - agm.tan-1 GN=pol PE=3 SV=1
--EKIPITKVQLKPGMSGPKLKQWPLSEEKIKALTEITQALEKEGKISKVGGENPYNTPVFCIRKKKTQWRMLIDFRALNKATQDFFEVQLGIPHPAGLK
RKKQITVLDIGDAYYSIPLDPEFRPYTAFTIPQVNNVGPGIRYQFNCLPQGWKGSPTIFQHTAQRVLKEIGKKVQDLEIIQYMDDMWIGSDLPEKEHDEK
VEEVRKLLLLRGFETPDKKVQKRPPYDWMGYKLYPSHWSLNKIEIPEQEHWTVNDIQKLVGVLNWASQLYPGIKTKALCKLLRGAQDLTAVVQWTEQAEV
EFRQNQEILKEEQQGAYYDPSKSLRATITKLDDGQWGYQFKQEG--KVLKTGKYTKSKNTHTNEFRVLAGMVQRVCKEAITFWGKLPIMEVPVEREVWEQ
WWSDYWQ-VTWLPEIEFISTPPLIKLWYNLV-KDPIPKAKVYYCDGACRNSKLGKAGFLTNTGESQVIELETTNQQAELQAVLLALKHSKSKVNIVTDSQ
YVMGILTAQPTSDSVLVNQIIEEMINKDAIYLTWVPAHKGIGGNQEIDKLVSQGIRQ-
>tr|Q88099|Q88099_SIV Pol protein OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--EQIPITPVKLKDGARGPHIKQWPLSKEKIKALTEICEQLEKEGKISKIGGENAYNTPIFCIRKKKTQWRMLVDFRELNKVTQDFFEVQLGIPHPAGLQ
KMKQITVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGVRYQFNCLPQGWKGSPTIFQNTAAKILEKIKEELKPLTIVQYMDDLWVGSQEDEYTHDKL
VEQLRVKLKTWGLETPDKKVQKKPPYEWMGYKLWPQKWQLNSINLEEKEQWTVNDIQKLVGKLNWAAQLYPGLRTKQICRLIRGKKNLLEEVQWTEEAEA
EYAENKEILKTEQEGTYYAPGKPLRAAVQKLEDGQWSYQFKQEG--KILKVGKYAKQKNTHTNELRTLAGLVQKICKEALVIWGELPIFELPVEREVWEQ
WWADYWQ-VSWIPEWEFVSVPPLVKLWYTLT-KEPIPGEDVYYVDGACRNSKEGKAGYITQYGKQRVEKLETTNQQAELVAIKMALEDSGEKVNIVTDSQ
YAMGILTAQPTSDSPLVEQIIALMVKKRAIYLQWVPAHKGIGGNEEIDKLVSQGIRR-
>tr|A0A059UDI4|A0A059UDI4_9RETR Pol protein (Fragment) OS=Feline immunodeficiency virus GN=pol PE=3 SV=1
--TKLPIVKAKLIDPDKGPRIKQWPLTNEKIEALTEIVERLELEGKVKRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNKLTLKGAEVQLGLPHPAGLC
KRRQVTVLDIGDAYFTIPLDPEYQPYTAFTLPNKNNQGPGRRYIWCSLPQGWVLSPLIYQSTLDNILHPWRKKYPNIDIYQYMDDIYVGSDFNKMEHKKI
VEELRALLLYWGFETPEEKLQEEPPYKWMGYNLYPNKWTIQVKKIEIPEIPTLNQLQKLVGIINWATQNVGGIKIKALTDLMRGNQQLDSYRQWTPEALE
EI-IAKEAIDSLTDMSYYERNKPVYCKFSIVGIHQIAYVVYQDQ--GQLWMGRMNRQKKKAENTCDIVLRAINKVKQEAIVRLGVEPIYQIPCSREIWES
YLITSYL-KNPPPEVQYIHASLMMRMLNMLT-SEPIEGVETWFIDGGRRSGKKAISAYWNSNGQSKYEYV-GSNQKAEVNALKLALQDGPLEMNIITDSQ
YIMNVLKQYPDSLSDVWQDVIDLLQKKVRIFLDWVPGHKNIPGNIEVDRICQENMII-
>tr|Q84809|Q84809_9RETR Pol polyprotein OS=Puma lentivirus 14 GN=pol PE=4 SV=1
--TKIPIVKAKLVDPNKGPKIKQWPLTNEKIEALTEIVERLETEGKVKRADPNNPWNTPIFCIKKKSGKWRMLIDFRELNKLTLKGAEVQLGLPHPAGLS
MRKQVTVLDIGDAYFTIPLDPDYQPYTAFTLPNKNNQGPGRRYVWCSLPQGWVLSPLIYQSTLDNILQPWRKKYPNIDVYQYMDDIYIGSDFSRLEHEKI
IQELRDLLIFWGFETPEDKLQQEPPYKWMGYTLYPNKWTIQKTKLDIPEVPTLNQLQKLAGVINWATQNVGGIKIKALTELMKGNQQLDSYRQWTPEALG
HLQIAKEAIENLTDMSYFDNKKPVYCKFSIVGVHQVAYIVYQDQ--GQLWMGRMNRQKKKAENTCDIVLRAINKVRQEAIVRLGIEPVYQIPCSREIWES
YLITSYL-KNPPPEVQFIHASLMMRMLTMLT-SEPIEGIETWFIDGGRRLGKKAISAYWTSEGKEKYEYI-GSNQQAEVNALRMALVDGPSEMNIITDSQ
YIMNVLKQYPDSLSGLWQKIIELLQSKIKIFLDWVPGHKNIPGNVEVDRICQENMII-
>tr|Q8J4V1|Q8J4V1_9RETR Pol polyprotein OS=Visna/maedi virus GN=pol PE=2 SV=1
--KKIPVTQVKLKEGCKGPHIAQWPLTREKLEGLKEIIDRLEKEGKLGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQ
KKKHVTVLDIGDAYFTIPLYEPYRQYTCFTLLSPNNLGPCVRYYWRVLPQGWKLSPSVYQFTMQKILKDWIEVHPMIQFGIYMDDIYIGSDLEIAEHRKI
VEELANYIAQFGFMLPEDKRQEGYPAKWLGFELHPDKWKFQKHTLADLKTITLNKLQKLVGDLVWRQSLIG-KSIPNILKLMEGDRALQSERQIEKIHVQ
EWETCKRKLAEMEG-NYYDEEKDIYGQIDWGNKA-IEYIVFQEKG-KPLWVNVV--HNIKNLSQPQQIIKAAQKLTQEVIVRTGKIPWILLPGKEEDWIL
EVQIG-N-ITWMPSFW-SCFRGSVRWKRRNV-VTEVVEGPTYYTDGGKKNG-IGNLGYIASTGEKYRIHEEGTNQQLELRAIEEACKQGPSKMNIVTDSR
YAYEFMLRNWDIKNPIQARIMKIIHEKEKVGVHWVPGHRGIPQNEEIDQYISEGST--
>tr|Q7ZSJ9|Q7ZSJ9_9RETR Pol polyprotein OS=Ovine lentivirus PE=4 SV=1
--KKIPVTEVKLKEGCKGPHIAQWPLTQEKLEGLQEIVDRLEKEGKVGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQ
KKKHVTILDISDAYFTIPLFEPYRKYTCFTMLSPNNLGPCTRYYWKVLPQGWKLSPAVYQFTMQSILRSWIAKHPLIQFGIYMDDIYIGSDMDIEKHRGV
VEELAAYIAQYGFMLPEEKRQEGYPATWLGFELHPDKWRFQKHTLPDLKTITLNKLQKVVGDLVWRQSLIG-KSIPNILKLMEGDRALQSERKIQQVHVQ
EWERCKRKLEEMEG-KYYDEGKDVYGQIDWGDRA-VEYVVFQEKG-KPLWVNVV--HSIKNLSLAQQIIKAAQKMTQEVIVRTGKIPWILLPGKEEDWIL
ELQAG-N-ITWMPSFW-SCYRGSVRWRKRNI-VAEVVAGPTYYTDGGKKNG-IGSLGYIASTGEKYRKREQGTNQQLELRAIEEACKQGPKVMNVVTDSR
YAFEFMLRDGDIKNPIQARIMKLIHNKDKIGIHWVPGHKGIPQNEEIDKYISEGST--
>tr|Q7LZ06|Q7LZ06_9RETR Pol protein OS=Visna/maedi virus PE=3 SV=1
--KKIPITKVSLKEGCKGPHIAQWPLTQEKLEGLKEIVERLEKEGKLGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQ
KKKHVTVLDIGDAYFTIPLYEPYRPYTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPSVYQFTMQEILRDWIREHPMVQFGIYMDDIYIGSDLEMGEHRRI
VEELASYIAQYGFMLPEEKRQEGYPANWLGFELHPERWKFQKHKLANMEPIRLNKLQKLVGELVWRQSLIG-KSIPNILKLMEGDRALQSVRNVETIHKE
EWERCRRKLEEMEG-NYYNAERDVYGQVDWGNKA-IEYIVFQEKG-KPLWVNVV--HAIKNLSQAQQIIKAAQKLTQEVIIRTGKIPWILLPVKEEDWIL
ELQVG-N-ITWMPSFW-SCYRGSVRWKRRNV-VTEVVEGPTYYTDGGKKNG-IGSLGYIASTGEKYRIHENGTNQQLELRAIEEACKQGPSKMNIVTDSR
YAFEFMIRNWDIKNPIQARIMKLIHSKEKVGIHWVPGHKGIPQNEEIDKYISEGST--
>tr|C0JIG9|C0JIG9_CAEV Pol polyprotein OS=Caprine arthritis encephalitis virus Ov496 PE=3 SV=1
--KKIPITQVHLKEGCMGPHVPQWPLTEEKLKGLTEIIDKLLEEGKLGKAPPHWTWNTPIFCIKKKSGKWRMLIDFRELNKQTENLTEAQLGLPHPGGLQ
KKKHVTVLDIGDAYFTIPLYEPYQKYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQKILEDWIQQHPDIQFGIYMDDIYIGSDLEIKKHRKI
VKELANYIAQYGFTLPEDKRQEGYPAKWLGFELHPQTWKFQKHTLPELRTITLNKLQKLVGELVWRQSIIG-KSIPNILKLMEGDRALQSERRIEEIHVK
EWEECRKKLAEAEG-HYLDPEKDIYGQIAWGNKA-IEYIVYQEKE-KPLWVNVV--HDIKNLSIPQQVIKAAQKLTQEVVIRTGKIPWILLPGKEEDWRL
ELQLG-N-ITWMPKFW-SCYRGQTRWRRRNI-TEEIVEGPTYYTDGGKKNK-VGSLGFITSAGEKVRQHEEGTNQQLELRAIEEALKHGPTTMNIVTDSR
YAFEFLLRDWDIRNPIQARIMEIAHKKNRIGIHWVPGHKGIPQNEEVDRYISEGST--
>tr|E0ZN12|E0ZN12_CAEV Pol polyprotein OS=Small ruminant lentivirus GN=pol PE=3 SV=1
--KKIPITKVKLKEGCKGPHVPQWPLTEEKLKGLTEIVDKLVAEGKLGKAPPDWTCNTPVFAIRKKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLK
QKKHVTILDIGDAYFTIPLYEPYREYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQKILEDWIQQHPEIQFGIYMDDIYIGSDLDIKRHREI
VEELANYIAQYGFTLPEEKRQEGYPAKWLGYELHPQTWKFQKHTLPELKTITLNKLQKLVGELVWRQSIIG-KSIPNILKLMEGDRALQSERKIEEKHVQ
EWETCRKRLEEMEG-NYYDAEKDIYGQLAWGDKA-IEYIVYQEKG-KPLWVNVV--HNIKNLSIPQQIIKAAQKLTQEVIIRTGKIPWILLPGKEEDWRL
ELQLG-N-ITWMPKFW-SCYRGHTRWRKRNI-VEEVVAGPTYYTDGGKKNK-TGNLGFIASTGEKFRRHEEGTNQQLELRAIEEALKQGPQRMNIVTDSR
YAFEFMLRNWDIKNPIQARIMEIAHKKDMIGVHWVPGHKGIPQNEEVDQYISEGST--
>tr|F5BD98|F5BD98_9RETR Pol polyprotein OS=Visna/maedi virus PE=3 SV=1
--KKIPITEVKLKEGCKGPHIAQWPLTQEKLEGLTEIVDRLEKEGKLGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQ
RKKNVTILDIGDAYFTIPLYEPYRKYTCFTLLSPNNLGPCVRYYWKVLPQGWKLSPSVYQFTMQEILRNWITRHPEIQFGIYMDDIYIGSDLELREHRGV
VEELANYIAQYGFMLPEEKRQEGYPAKWLGFELHPEKWKFQKHTLPEITPITLNKLQKLVGDLVWRQSLIG-KSIPHILKLMEGDRALQSERVIETIHVK
EWEQCKKKLAEMEG-HYYNEEKDIYGQVDWGDRA-IEYIVFQEKG-KPLWVNVV--HSIKNLSQAQQIIKAAQKLTQEVIVRTGKIPWILLPGKEEDWIL
ELQIG-N-ITWMPSFW-SCYRGSVRWKRRNV-VTEVVEGPTYYTDGGKKNG-LGSLGYIASTGDKYRIHEKGTNQQLELRAIEEACKHGPTRMNIVTDSR
YAYEFMIRNWDTKNPIQARIMKLIHNKEKVGIHWVPGHKGIPQNEEIDRYISEGST--
>sp|P03370|POL_VILV Pol polyprotein OS=Maedi visna virus (strain 1514) GN=pol PE=3 SV=1
--KKIPSTRVRLKEGCKGPHIAQWPLTQEKLEGLKEIVDRLEKEGKVGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLQ
RKKHVTILDIGDAYFTIPLYEPYRQYTCFTMLSPNNLGPCVRYYWKVLPQGWKLSPAVYQFTMQKILRGWIEEHPMIQFGIYMDDIYIGSDLGLEEHRGI
VNELASYIAQYGFMLPEDKRQEGYPAKWLGFELHPEKWKFQKHTLPEITPITLNKLQKLVGDLVWRQSLIG-KSIPNILKLMEGDRALQSERYIESIHVR
EWEACRQKLKEMEG-NYYDEEKDIYGQLDWGNKA-IEYIVFQEKG-KPLWVNVV--HSIKNLSQAQQIIKAAQKLTQEVIIRTGKIPWILLPGREEDWIL
ELQMG-N-INWMPSFW-SCYKGSVRWKKRNV-IAELVPGPTYYTDGGKKNG-RGSLGYIASTGEKFRIHEEGTNQQLELRAIEEACKQGPEKMNIVTDSR
YAYEFMLRNWDIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEEIDRYISEGST--
>tr|F6LY11|F6LY11_CAEV Pol protein OS=Caprine arthritis encephalitis virus PE=3 SV=1
--DKIPTIKVKLKEGCKGPHVQQWPLTAEKLQGLTEIVEKLLGEGKIGEAPPHWTWNTPIFCIKKKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQ
KKKNVTVLDIGDAYFTIPLYEPYRKYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPSVYQFTMQRILKDWIKDHSEIQFGIYMDDIYIGSDLDRKSHRDI
VENLAKHIAQYGFMLPEDKRQEGHPAKWLGFELHPDTWKFQKHDLAELTKITLNKLQKLVGDLVWRQSLIG-KSIPKILKLMEGDRDLQSTREVTAEHTQ
EWEACRRKLKEMAG-HYYDEEKDVYGQLTWGNKA-IEYIVFQEKG-RPLWVNVV--HQIKNLSLPQQIIKAVQKLTQEVIIRTGKVPWIMLPGKEEDWIL
ELQMG-N-ITWMPAFW-SCYRGAPRWRRRNI-VEEVVEGPTYYTDGGKKNG-QGSFGYISSTGEKFRKHEKGTNQQLELRAIEEVCKRGPEKLNIVTDSR
YAFEFMLRDWDIKNPIQARIMEIVHKKEKIGVHWVPGHKGIPQNEEIDKYISEGST--
>tr|F6LY17|F6LY17_CAEV Pol protein OS=Caprine arthritis encephalitis virus PE=3 SV=1
--DKIPTVKVKLKEGCTGPHVQQWPLTAEKLQGLTEIVNRLLEEGKIGEAPPHWTWNTPIFCIKKKSGKWRMLIDFRELNKQTEDLTEAQLGLPHPGGLQ
KKKNVTVLDIGDAYFTIPLYEPYRKYTCFTLLSPNNLGPCRRYYWKVLPQGWKLSPSVYQFTMQKILTNWRNEHPEIQFGIYMDDIYLGSDLXIKDHRRI
VEDLAMQIAKYGFMLPEDKRQEGYPANWLGFELHPNTWKFQKHKLPELQAITLNKLQKLVGDLVWRQSLIG-KGIPNILKLMEGDRDLQSHREITEVHIQ
EWEECRKKLQQMEG-SYYQEEKDIYGQLTWGNKV-IEYIVFQEKG-KPLWVNVV--HQIKNLSLAQQIIKAAQKLTQEVIIRTGKVPWVMLPGKEEDWIL
ELQTG-N-ITWMPPFW-SCYRGSPRWKRRNI-TEEVVEGPTYYTDGGKKNG-IGSFGYISSTGEKFRKHEDGTNQQLELRAIEEACKNGPEKLNIVTDSR
YAFEFMKRNWDIKNPIQARIMKLLHEKKAVGIHWVPGHKGIPQNEEIDKYISEXST--
>tr|Q6H1V5|Q6H1V5_CAEV Pol protein OS=Small ruminant lentivirus GN=pol PE=3 SV=1
--KKIPITKVTLKEGYKGPHVAQWPLTQEKLEGLKEIVERLEKEGKLGRAPPHWTCNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGLK
KRKNVTVLDIGDAYFTIPLYEPYRQYTCFTLLSPNNLGPCVRYYWKVLPQGWKLSPSVYQFTMQEILWEWIKEHPLIQFGIYMDGIYIGSDLEIGEHRKI
VNNLAGYIAQYGFMLPEEKRQEGYPAHWLGFELHPDKWKFQKHTLPELTPIALNKLQKLVGDLVWRQSLIG-KSIPSILKLMEGDRALQSERQIEKNHIQ
EWEECRKKLAKMEG-SYYDEEKDIYGQIDWGCKA-VEYIVFQEKG-KPLWVNVV--HSIKNLSQAQQIIKAAQKLTQEVIIRTGKIPWIMLPGKEEDWIL
ELQIG-N-ITWMPSFW-SCYRGSVRWKKRNV-VTEVVEGPTFYTDGGKKNG-IGSLGYVASTGAKYRQHESGTNQQLELRAIEEACKQGPAKMNIVTDSR
YAYEFMLRNWDIKNPIQARIMKIVHDKDKIGVHWVPGHKGIPQNEEVDKYISEGST--
>tr|K4P9I3|K4P9I3_9RETR Pol protein OS=Equine infectious anemia virus GN=pol PE=3 SV=1
--E-ISPRRIKLKPGMTGPKIPQWPLTKEKLTGAKEIIQRLLSEGKISEASDDNPFNSPIFVIKKRSGKWRLLQDLRELNKAVQVGTEISRGLPHPGGLI
KSKNMTVMDIGDAYFTIPLDPLFRRYTAFTVPSINHQEPDKRYVWNCLPQGFILSPYIYQKTLQEILQPFRDRHPEVQLYQYMDDLFIGSNESRKQHNEL
VKELRMILLEKGFETPEEKLQDEAPYGWLGYQLFPNNWKMPTVQLELAKEPTLNDVQKLMGNITWISSGIPGLTVKHIAATTKGCLDLNEKVNWTAEAQQ
ELEQNNEKVQKAQGLQYYNPDEEVICEINLTKNCEATYIVKQSQ--GILWAGKKIMKANKGRSTVKNLMLLLQHVATESITRIGICPTFKVPFTKEQVSW
EMKKGWY-YSWLPEIIYSSQVVHDEWK-LKL-VEEPTSGITIYTDGGKQNG-RGVAAYVTSTGKTKQKQLPVTHQRAEMIAIQMALEYNDKQLNIVTDSY
YCWKNITEGLGPDSPWWP-IIQNIYNKETIYFAWVPGHKGIYGNQLATKITEEGST--
>tr|H6W389|H6W389_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--------------------------------------------------GE------AFFFIS-LDGLW-----------------K------------
-------------------------YSAFSIPWVNHGAPGVRFPFQGVSPGRKGSPTIFPSSQAKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTK
IEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPQKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTEEAEL
ELAENREILNEPVHGAYYDPSKELIAEIQKQGQDQWTYQIYQETF-KNLKTGKYAKMRTAHTNDVKQLTEAVQKIAMESIVIWGKIPKFRLPIQKETWET
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIAGVETFYVDGAARETKIGKAGYVTDRGRKKIVSLTTTNQKTELQAIYIALQDSGPEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEQLIRKERIYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|A0A0M4AGK4|A0A0M4AGK4_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEVAIYQYMDDLYVGSDLEIGQHRIK
IEELREHLLKWGFTTPDKKHQKEPPFMWMGYELHPDKWTVQPIHLPEKESWTVNDIQKLVGKLNWASQIYSGIKVKQLCKCIKGTKSLTEVVPLTEEAEL
ELAENREIIKEPVHGVYYDPAKEIIAEIQKQGQDQWTYQIYQEQY-KNLKTGKYAKMKSAHTNDVKQLTEAVQKIAQECIVIWGKTPKFRLPIQKETWET
WWTEYWQ-ATWIPEWEFVHTPPLVKLWYQLE-KEPIAGVETFYVDGAARETKLGKAGYVTDRGRQKIVSLTTTNQKTELHAIFLALQDSGLDVNIVTDSQ
YALGIIQAQPDSESELVSQIIEQLIKKERVYLSWVPAHKGIGGNEQVDKLVSNGIRK-
>tr|K7QUN4|K7QUN4_9PLVG Pol protein (Fragment) OS=Human immunodeficiency virus PE=3 SV=1
--SPIDTVPVKLKPGMDGPKVKQWPLTEEKIKAITEICKEMEEEGKISKIGPENPYNTPIFVIKRKDITWRKLIDFRDLNKRTQDFWEVQLGIPHPAGLK
KRKSVTVLDVGDAYYSIPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPMGWKGSPAIFQSSMIKILEPFRIKNPELTICQYMDDLYVASDLEIEQHRIK
IXELRAHLLSWGLTTPEKKHQXEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKTRQLCKLLRGTKALTDIVPLTEEAEL
ELAENREILKTPVHGAYYDPSKDLVAEVQKQGQDQWTYQIYQETF-KNLKTGKYARKRSAHTNDVRQLVEVVHKIATESIVTWGKTPKFRLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIVGAETFYVDGAARETKLGKAGYVTDKGRQKVVSLTTTNQKTELHAIYLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESEIINQIIEELIKKEKVYLSWVPAHKGIGGNEKVDKLVSSGIRK-
>tr|K4ML58|K4ML58_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--AQVEPVKVTLKPGKDGPKVRQWPLSKEKIQALKEICEQMEKDGQLEEAPPTNPYNTPTFAIKKKDNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLA
KRKRITVLDVGDAYFSIPLDEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRGVLEPFRKANPDVTLIQYMDDILIASDRTDLEHDRV
VLQLKELLNGMGFSTPDEKFQKDPPYQWMGYELWPTKWKLQKIELPQK-DWTVNDIQKLVGVLNWAAQVYPGIKTKHLCKLIRGKMTLTEEVQWTELAEA
EYEENKIILSQEQEGCYYQEGKPLEATVVKNQDNQWSYKIHQED--KVLKVGKFAKIKNTHTNGVRLLAHVVQKIGKEAIVIWGRIPKFHLPVEREIWEQ
WWTDYWQ-VTWIPDWDFVSTPPLVRLVFNLV-KDPLEGEETFYTDGSCRQSKEGKAGYVTDGGKDRVKVLETTNQQAELEAFLMALTDSGPKANIIVDSQ
YVMGIVAGQPTSENKIVSQIIEEMIKKTAIYVTWVPAHKGLGGNQEVDHLVSQGIRQ-
>tr|Q8Q7J4|Q8Q7J4_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus SIV-mnd 2 GN=pol PE=3 SV=2
--SKVETVKVTLKPGTDGPKIKQWPLSKEKILALQEICSQMEKEGQISKIGPENPYNTPVFCIKKKDTSWRKLVDFRQLNKVTQDFFEVQLGIPHPGGLK
QCEQITVLDIGDAYFSCPLDEDFRKYTAFTIPSVNNQGPGIRYQYNVLPQGWKGSPAIFQATADKILQPFRERHPDVVIYQYMDDLFVGSDRVAPEHSRM
IQELRDHLLFWGLETPDKKFQKEPPFEWMGYILHPKKWTVQKVQLPEK-EWTVNDIQKLVGKLNWASQIYSGIKTKELCRLIRGAKPLDEKVEWTREAEL
EYEENKLIVQEEVHGVYYQPEKPLMAKVQKLTQGQWSYQIEQEDN-KPLKVGKYARTKNAHTNELRVLAGLVQKIAKEALVIWGKLPKFYLPIEREVWDQ
WWPEYWQ-ATWIPEWEFVSTPHLIGLWYNLL-REPVPGEDVYYVDGAARNSKEGKAGYVTARNKSRVIALETTNQKAELEAIKMALQDSGPKVNIVTDSQ
YAMGILSAAPDSDNPIVREIIELMIHKEAVYLAWVPAHKGIGGNEQVDKLVSRGVRQ-
>tr|A0A0A7RWQ2|A0A0A7RWQ2_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SQVEPVKVTLKPGMDGPKIKQWPLSKEKIEALKEICEQMEKEGQISRIGPENAYNTPVFCIKKKDTKWRKLVDFRQLNKATQDFFEVQLGIPHPGGLK
ECEQITVLDVGDAYFSCPLDPDFRKYTAFTIPSVNNQGPGIRYQYNVLPQGWKGSPAIFQATADKILQPFREKNPDVIIYQYMDDLFVGSDRPKHLHDQM
IKELRTHLKFWGLETPDKKFQDNPPYEWMGYQLHPKKWTVQEIRLPDK-EWTVNDIQKLVGILNWASQIYSGIKTKELCKLIRGAKPLDEEVEWSREAEL
EYEENKLILKEQMHGVYYQPEKPLKAKIQKLGNGQWSYQIEQDDN-KPLKTGKYAKVKNSHTNDMRMLAGLVQKVAKEALVIWGRLPIFYLPVEREVWEQ
WWQEYWQ-VTWIPDWEFVSTPPLIKLWYNLL-SDPIPGEEVYYVDGAARVSKEGKAGYVTSRGKEKVIALETTNQKAELQAILLALKDSGPKVNIVTDSQ
YAMGIISSSPESDNPIVNQIIEQMISKEAVYLNWVPAHKGIGGNEEVDKLVSRGIRQ-
>tr|Q90Q90|Q90Q90_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--SKIETVKVTLKPGMDGPRIKQWPLSKEKILALQTICDEMEKEGKISRIGPENPYNTPVFCIKKKDTSWRKLVDFRQLNRVTQDFFEVQLGIPHPGGLK
QCEQITILDIGDAYFSCPLDESFRKYTAFTIPSVNNQGPGIRYQYNVLPQGWKGSPAIFQATADKILKTFKEEYPEVLIYQYMDDLFVGSDLSASEHNKM
VNRLREHLRFWGLETPDKKFQKEPPFEWMGYVLHPQKWTVQKIQLPEK-EWTVNDIQKLVGKLNWASQIYSGIKTKELCKLIRGAKPLDEVVEWTREAEL
EYEENKLIVQEEVHGVYYQPGKPLMAKVQKLTQGQWSYQIEQEEN-KPLKVGKYARTKHAHTNELRVLAGLVQKIAKECIVIWGELPKFYLPLEREVWDQ
WWHDYWQ-ATWIPEWEFISTPPLIRLWYNLL-KEPIPGEDVYYVDGAARNSKEGKAGYYTARGKSKVIALETTNQKAELEAILLALKDSGPRANIVTDSQ
YALGILSATPDSDNPIVREIINQMIAKEAVYLAWVPAHKGIGGNEQIDKLVSKGIRQ-
>tr|Q90PW5|Q90PW5_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SKAETVKVELKPGQDGPRVKQWPLSKEKIEALIEICNAMEKEGKISRIGPENPYNTPIFCIKKKDTKWRKLVDFRELNKRTQDFFEVQLGIPHPGGLK
KCKQITVLDIGDAYFSCPLYEPFRKYTAFTIPAINNQGPGIRYQYNVLPQGWKGSPAIFQTTANQILEPFRKENPDVTLYQYMDDLFVGSDRTEYEHNEL
IKRLRKHLLAWGFETPDKKFQEKPPFEWMGYVLHPDKWTVQEIKLPEK-EWTVNDIQKLVGKLNWASQIYSGIKTKELCKLIRGVKALDEKVVFTREAEL
EYEENKIILKEKIHGVYYDPEKPLIAKIQKLEGGQWSYQIEQGDS-KPLKTGKYAKQKTAHTNEIRMLAGLVQKICKEAIVIWGKLPKFELPIEREVWEQ
WWADYWQ-VSWIPEWEFVSTPPLIRLWYNLV-RDPIPGEEVYYVDGAARNSKLGKAGYVTDRGKEKVKELETTNQKAELEAVLLALKDSGKKVNLVTDSQ
YVFGILAGSPDSESPLVQQIIEQLIGKEEVYLSWVPAHKGIGGNEQVDKLVSNGIRQ-
>tr|Q9DKV8|Q9DKV8_CAEV Pol protein OS=Caprine arthritis encephalitis virus GN=pol PE=3 SV=1
--KKIPTIPVELKEGCKGPHVPQWPLTAEKLQGLTGIVEKLLQEGKLAEAPEGWTWNTPIFCIKKKSGKWRMLIDFRELNKQTADLAEAQLGLPHPGGLQ
RKKNVTILDIGDAYFTIPLYEPYQKYTCFTLLSPNNLGPCKRYYWKVLPQGWKLSPAVYQFTMQRLLKGWIQQHKNIQFGIYMDDIYIGSDLTIAQHRKI
IEELASFIEQFGFTLPEDKRQEGYPAKWLGFELHPEKWKYQKHKLPELEGITLNKLQKIVGELVWRQSL-IGKSIPNIIKLMEGDRALQSERKIERIHVQ
EWEACQKKL-DEMVGNYYREEEDIYGQIT-WGDKAIKYIVFQRKG-EPLWVNVVHDIKNLSLP--QQVIKAAQKLTQEVIIRTGKIPWLLLPGREEDWRL
EL-QVGN-ITWMPSFWSCYR-GAPKWKRRNI-VAAVVDGPTYYTDGGK-KNAQGSFGFISPTGE-KFRRHEGTNQVLELRAIEDPCKQGPESMNIVTDSR
YAYEFMLRNWDIRNPIQARIMAEVHKKKQVGIHWVPGHKGIPQNEEIDQYISEGSTG-
>tr|B2XY38|B2XY38_CAEV Pol polyprotein (Fragment) OS=Caprine arthritis encephalitis virus Roccaverano GN=pol PE=3 SV=2
--KRIPTIKVKLKEGCSGPHIPQWPLTREKLEGLKDIVDRLEKEGKVARAPPERTWNTPIFCIKKKSGKWRMLIDFRELNRQTEDLAEAQLGLPHPGGLQ
QMKNVTVLDIGDAYFTIPLYEPYQKYTCFTLLAPNNMGPCTRYYWKVLPQGWKLSPAVYQFTMQEILRDWIVNHPKIQFGIYMDDIYIGSNLEITEHRKI
IENLAAYLLHYGFTLPEDKRQEGYPASWLGYELHPNKWKFQKHKLPALEGITLNKLQKIVGDLVWRQSL-IGKSIPNILKLMEGDRDLHSERILTQKHVQ
EWKECQRKL-EEMEGTYYDPERDIYGQVD-WGNQAIEHIVFQEKG-KPLWVNVVHSIKNMSLP--QQLIKAAQKLTQEVIIRTGRIPWILLPGREEDWLL
EL-QVGN-IIWMPTFWSCYR-GAVRWRRKNI-VASVVQGPTYYTDGGK-KNKVGSLGFISSTGV-KFRKHEGTNQQLELRAIEEACRHGPDSMNIVTDSR
YAYEFLLRDWEIINPIQARIMALVHRKTALGVHWVPGHKGIPQNEEIDKYISEHTGQ-
>tr|C9DI71|C9DI71_CAEV Pol polyprotein (Fragment) OS=Caprine arthritis encephalitis virus GN=pol PE=3 SV=1
--QKIPTVRVKLKEGCAGPRIPQWPLTEEKLKGLKEIVDRLEAEGKVARAPPEWTWNTPIFCIKKKSGKWRMLIDFRELNKQTEDLAEAQLGLPHPGGMQ
HMTTVTVLDIGDAYFTIPLYEPYQKYTCFTLLAPNNMGPCTRYYWKVLPQGWKLSPSVYQSTMQEILREWIASHPRIQFGIYMDDIYIGSNLEIGEHRKI
IEDLAAYLLLYGFTLPEDKRQEGYPAKWLGYELHPHKWKFQKHKLPDLEGITLNKLQKLVGDLVWRQSL-IGKSIPNILKLMEGDRDLHSERILTQVHVQ
EWKECQRKL-EEMEGAYYDPEKDIYGQID-WGNRAIEYIVYQEKG-KPLWVNVVHSIKNMSLP--QQIIKAAQKLTQEVIIRTGKIPWILLPGREEDWIL
EL-QVGN-VMWMPTFWSCYK-GSVRWRQKIV-TATAVDGPTFYTDGGK-KNKIGSLGFIASTGK-RFRKHEGTNQQLELRAIEEACKQGPDSMNIVTDSR
YAYEFLLRDWDIVNPIQARIMRIVHHKTALGVHWVPGHKGIPQNEEIDKYISEQNVQ-
>tr|A0A076V8Z4|A0A076V8Z4_9HIV1 Pol protein OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPRMDGPKVKQWPLTAEKIKALTEICTDMEKEGKISKIRPKNPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLRIPHPARLK
QKKSVTVLDVGDAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILDPFRKKNPEIVIYQYIDDLYVRSDLKIGQHRTK
IEELRQHLLKWGLTTPDKKHQKEPPFLWIGYELHPDKWTVQPIQLPTKDSWTVNDIQKLVRKLNWASQIYARIQVRQLCKLLRGAKALTDIVPLTEEAEL
ELAENQEILKEPVHRAYYDPTKDLIAEIQKQRQGQWTYQVYQEPY-KNLKTGKYARIKSAHTNDVRQLTEAVQKIAQESIVIQGKTPKFRLPIQKETWET
WWSEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPIVGAETFYVDGAARETKKGKAGYVTDKRRQKVVSLTTTNQKAELEAIYIALKDSGSKVNIVTDSQ
YALRIIQAKPDSESDLVSQIIEQLIQKDQIYLSWVPAHKRIGGNEQVDKLVSSGIRK-
>tr|T2CJU7|T2CJU7_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SPIETVPVKLKPEMDGPKVKQWPLTEKKIKALVKICTEMEKKGKISKIGPENPYNTPVFAIKKKDTKWRKLLDFRKLNKKTQDFWEVQLKIPHPAGLK
KKKSVTVLNVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSNLKVGQHRTK
IEKLRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPEIKVKQLCKLLRGTKALTEVIPLTEEAEL
KLAENREILKEPVHGVYYDPSKNLIAEIQKQGQGQWTYQIYQEPF-KNLKTEKYARRRGAHTNDIKQLTEAVQKITTESIVVWGKTPKFKLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLK-KKPIVGAETFYVDGAARETKLKKAGYVSNRERQKVVTLTTTNQKTELQAIYLALQDSGLKVNIVTDSQ
YALEIIQAQPDSKSELVNQIIEQLIKKKKVYLAWVPAHKGIGGNEQVDKLVSTKIKK-
>tr|Q6KER9|Q6KER9_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLTTEKIEALREICTEMEKEGKISRIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
QKKSVTVLDVGDAYFSCPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSTMTKILEPFRKNHPEIIIYQYMDDLYVGSDLELAQHREA
VEELRSHLLNWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKEVWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGTKALTEVVNFTKEAEL
ELAENREILKETLHGVYYDPGKELVAEIQKQGQGQWTYQIYQELY-KNLKTGKYAKMKSAHTNDIKQLVEVVRKVATESIVIWGKTPKFRLPVQKEVWEA
WWTDHWQ-ATWIPDWEFVNTAPLVKLWYQLE-TEPIYGAETYYVDGAARETKLGKAGFVTDRGRQKVVSIETTNQKAELQAILMALQESGQEVNIVTDSQ
YAMGIIHSQPDSESNLVSQIIEELIKKERVYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|E8ZEQ8|E8ZEQ8_SIV Pol protein (Fragment) OS=SIVcpz Ptt-04Cam155 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLSEEKIKALTEICEEMEKEGKISKIGPENPYNTPIFAIKKRDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
RKKSVTXLDVGDAYFSCPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPEITIYQYMDDLYVGSDLEITQHRNK
VEELRKHLLAWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKEVWTVNDIQQLVGKLNWASQIYPGIKVKQLCKLIRGAKKLTDIVNFTTEAEL
ELAENREIVKTPVHGEYYDPEKELIAEIQKQGSCQWTYQIYQEQX-RNLKTGKYARQRAAHTNDIRQLAEVVQKVATESIVIWGKTPKFRLPVQKENWEN
WWAEYWQ-ATWIPEWEFVNTPPLVKLWYSLE-TEPIQNTETFYVDGAARDSKKGRAGYVTDRGRQKVINLETTNQQAELKALHLALQDSGHQVNVVTDSQ
YVLGIIQSQPDSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVDKLVSAGIRR-
>tr|A0A0H3Y3I3|A0A0H3Y3I3_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
-ISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSIPLDEAFRKYTAFTIPSINNAAPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTQNPDIVIYQYMDDLYVGSDLEIGQHRTK
IEELRDHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIQVRHLCKLLRGTKALTDVIPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIADIQKQGQDQWTYQIYQEPF-KNLKTGKYAKRRTAHTNDVRQLTEAVQKISMESIVIWGKTPKFRLPIQKETWEL
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIAGAETFYVDGAARETKKGKAGYVTDRGRQHIVSLTTTNQKAELQAIQLALQDSGPEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEELIKKERVYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|Q3S469|Q3S469_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
-ISPIETVPVKLKPGMDGPKVKQWPLTGEKIKALTEICTEMEKEGKISKIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLHESFRKYTAFTIPSINNEKPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTKNPEMVIYQYMDDLYIGSDLEIGQHRAK
IEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQAIQLPDKEDWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLLRGAKALTDIVSLTEEAAL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGLDQWTYQIYQEPY-KNLKTGKYAKRGSAHTNDVKQLTEAVQKISTESIVIWGKVPKFKLPIRKETWEV
WWTEYWQ-ATWIPDWEFVNTPPLVKLWYQLE-TEPIPGAETFYVDGAARETKLGKAGYVTDKGKQKIITIQTTNQKTELHAIQLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSRGIRK-
>tr|A0A0K1HB40|A0A0K1HB40_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
-ISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSTNNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPEIVIYQYMDDLYVGSDLEIGQHRAK
IEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYGGIKVKQLCRLLRGAKALTDIVPLTEEAEL
ELAENREILKDPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEPF-KNLKTGKYARKRSAHTNDVKQLTEVVQKVVMESIVIWGKTPKFRLPIQKETWDT
WWMDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIEGVETFYVDGAARETKLGKAGYVTDRGRQKVVSLTTTNQKTELHAIYLALQDSGSEVNIVTDSQ
YALGIIHAQPDSESELVSQIIEKLIEKDKVYLSWVPAHKGIGGNEQVDKLVSQGIRR-
>tr|Q87622|Q87622_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=2
-ISKVETVPVKLKEGMDGPRVKQWPLSKEKIEALKEICDKLEAENKISRIGPDNPYNTPIFAIKKKDSKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLK
QKKSVTVLDVGDAYFSIPLDQDFRKYTAFTIPSVNNETPGIRYCYNVLPQGWKGSPAIFQASMTKILAPFRDKYPAVEIYQYMDDLYVGSDMEITAHREM
IEKLRQHLQVWGLETPDKKHQKEPPFQWMGYELHPDKWTVQKIKLPEPDDWTVNDIQKLVGKLNWASQIYPGIKTKQLCRLIRGVKSLTDRVQMTREAEL
ELEENKQILQQKIEGYYYQPGLPLKATIQKQGSGQWTYQIYQNEG-KLLKAGKYARPTGTHTNEVRQLAGVVQKIGLESIVIWGEVPKFQLPITRETWDA
WWSDYWQ-ATWIPEWEFVNTPPLIRLWYNLL-ADPIPEAETFYVDGAARNSQLGKAGYVTDRGRSRVKHLQTTNQQAELQAILMALEDSTGPVNIVTDSQ
YALGVLQGTPDSESPLVEEIIQKLIKREQIYLSWVPAHKGIGGNEQVDKLVSQGIRQ-
>tr|V5T8Y7|V5T8Y7_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
-SANIPVTKVSLKPGLDGPRVKQWPLSKEKIEGLQKICDRLEAEGKIEKAALGNPYNTPIFCIKKKDNEWRKLIDFRELNKRTQDFWEIQLGIPHPGGLH
EKKNITVLDIGDAYFSVPLDPEYQKYTAFTVPSVNNMSPGQRYVYKVLPQGWKGSPTIFQGTVAKILEPVRRE-GKLHIAQYMDDLYIGSDLDIKEHRQE
VQKVRTLLLHYGLETPEKKYQETPPFKWMGYELHPGKWKLQKVKIPEKENWTVNDIQKLVGALNWLSQIYPGIRTKELSKCTKGKKGLLDEVQLSGQAEE
ELEQNREILKEEQEGVYYKPEEEIWVTIFRLGKGQWGYAVEQVHG--TLKRGKVNTGKSAHFNSMQELAMVIQKIGREALVIWGKVPLMKIPAKREDWEQ
WWSDYWQ-STWIPEIEFVSTSPVVKLVWNLV-LSPLEKEVTYWTDGGYRKEGIGKAGWVNSKGEEEIEVLHGSNQQAELKGILMALKHGPKRMNLVTDSL
YALGIVSGQPETNSPLVEQIIQEGIKKEALHVAWCPAHKGIGGNELIDQKV--GVRK-
>tr|G1EH08|G1EH08_SIV Pol polyprotein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
-ISPVEVVKVQLKEGMDGPKVKQWPLSREKIEALTEICNTLEKEGKISAIGPENPYNTPIFAIKKKDSKWRKLVDFRELNKRTQDFWELQLGIPHPAGLK
KRNMVTVLDVGDAYFSIPLDPDFRKYTAFTIPSLNNNTPGKRFQYNVLPQGWKGSPAIFQSSMTKILDPFRKEHPDVDIYQYMDDLYVGSDLSEEEHRKL
IKKLRQHLLLWGLETPDKKYQEKPPFMWMGYELHPNKWTVQNITLPEPEQWTVNHIQKLVGKLNWASQIYGGIKTKELCKLIRGVKGLTDPVEMTREAEL
ELEENKQIIKEKVQGAYYDPKLPLQAAVQKQGQGQWTYQIYQEEG-KNLKTGKYAKSPGTHTNELRQLAGLIQKIGNESIVIWGTVPKFLLPVSKETWSQ
WWTDYWQ-VTWVPEWEFINTPPLIRLWYNLL-SDPIPEAETFYVDGAARDSKKGRAGYVTNRGRYRTKELETTNQQAELWAIDLALKDSGAQVNIVTDSQ
YVMGVLQGLPDSDSPIVEQIIQQLTQKAAIYLAWVPAHKGIGGNEEVDKLVSKNIRK-
>tr|J3SGI7|J3SGI7_SIV Pol polyprotein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
-ISTVEIVKVKLKEGMDGPKVKQWPLSREKIEALTEICENLRAEGKIIEVGPDNPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KRKVITVLDVGDAYFSIPLDPEFQKYTAFTIPSVNNERPGKRYCYTVLPQGWKGSPAIFQYSMTKILDPFRKKHPEIDVYQYMDDLYVGSDLTAEKHKEV
VQELRNHLKAWGLETPDKKYQEKPPFLWMGYELHPEKWTVQQIKLPEPETWTVNDIQKLVGKLNWASQIYPGIRTRELCKLIRGVKGLTDVVQLTAEAEL
ELEENKQILKETVQGTYYDPKEPLKAAVQKQGKGQWTYQVYQKEN-QILKTGKYARNHGTHTNELKQLAGVVQKIGTESIIIWGRVPVFQLPVTKEVWQQ
WWSDYWQ-VSWIPEWEFVNTPPLIKLWYNLL-TEPMPEAETYYVDGAARDSKLGKAGYVTDRGKSRVIELTTTNQQAELQAILLALKDAKEKVNIVTDSQ
YVLGILQGTPDSDSPLVEEIIQELMNKEAVYLNWVPAHKGIGGNEEVDKLVSKNIRK-
>tr|B3VDN0|B3VDN0_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
-ISPIETVPVKLKPGMDGPKVRQWPLTEEKIKALTEICTELEKEGKISKIGPENPYNTPVFAIKKKNTRWRKITDFRELNKRTQDFWEVQLGIPHPGGLK
NKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRAKNPDFIIYQYVDDLYVASDLEIGQHRAK
IKELRDYLWKWGFYTPEEKHQKEPPFHWMGYELHPDKWTVQPIKLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGAKALTDIVPLTTEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPF-KNLKTGKYAKMRGAHTNDVKQLTEAVQKIATESIVIWGKIPKFRLPIQKETWDT
WWSEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPIAGVETFYVDGAARETKLGKAGYVTDRGRQKAVSLTTTNQKTELQAIYLALQDSGLEVNIVSDSQ
YALGIIQALPDSESELVNQIIEQLINKERVYLAWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|Q6UEW6|Q6UEW6_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
-ISPIETVPVKLKPGMDGPKIKQWPLTEEKIKALTDICKEMEKEGKISRIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFKKQNPELIIYSYMDDLYVGSDLEIGQHRAK
IEKLREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPITLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEIIPLTKEAEL
ELAENKEILKEPVHGAYYDPSKDLIAEVQKQGDGQWTWQIYQEPF-KNLKTGKYARMRSAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWDA
WWMEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIIGAETFYVDGASRDTKLGKAGYVTDKGRQKVVSFTTTNQKTELQAINLALQDSGAKVNIVTDSQ
YALGIIQAQPDSESEIVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|A0A0K2GUS3|A0A0K2GUS3_9HIV2 Pol protein (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=3 SV=1
-LAKVEPIPVHLKPGMDGPRLKQWPLSKEKIEALTEICQKMEREGQLEEAAPNNPYNTPTFAIRKKDSKWRMLIDFRELNKATQNFTEVQLGIPHPAGLP
EKNRITVLDIGDAYFSVPLYEGFRQYTAFTLPAVNNMRPGKRYVYKVLPQGWKGSPALFQATMATVLEPFRKANPDVILVQYMDDLLIASDRNTAEHDQM
VMQLKDMLNKIGFSTPEEKYQKEYPLKWMGYELYPKKWKLQKITLPIKEEWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRMIRGKQTLTEKVEWTEQAEA
EHAENNIILQQEQEGRYYKEGEPLEATVVKARDTQWGYKIHQGS--RILKVGKFAKVKNTHTNDLRLLASVVQKIGKESLVIWGQLPIFHLPVERETWES
WWTDYWQ-VTWIPDWDFISTPPLIRLVFNLV-KDPIQGAETYYVDGSCRNSKEGKAGYITDRGKEKVKVLTTTNQQAELEAIKMALEDSGDKVNMVTDSQ
YVIGILSGQPTSESELVQQIIENMIRKSEIYLAWVPAHKGIGGNQEVDKLVSQGIR--
>tr|K4MLL6|K4MLL6_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
-VARVEPVKVKLKPGKEGPKLKQWPLSKEKIEALKEICDKMEKEGQLEEAPPTNPYNTPTFAIKKKDNKWRMLIDFRELNRVTQDFTEIQLGIPHPAGLA
KRRRITVLDVGDAYFSIPLDEEFRQYTAFTLPSVNNAEPGKRYVYKVLPQGWKGSPAIFQHTMRQVLDPFRKAHPDVTLVQYMDDILIASDRTDLEHDKV
VLQLKELLNGLGFSTPDEKFQKDPPYQWMGYELWPTKWKLQKIELPQKENWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEA
EYEENKIILSQEQEGCYYQEDKPLEATIMKSQDNQWSYKIHQGE--RVLKVGKYAKIKNTHTNGVRLLAHVVQKIGKEAIVIWGQVPKFHMPVERETWEQ
WWTDYWQ-VTWIPEWDFVSTPPLVRLVFNLV-KDPIERAETFYVDGSCKQSKEGKAGYITDRGRSKIKSLETTNQQAELEAFLMAVTDSGTEANIIVDSQ
YVMGIVTGQPTSESKIVNQIIEEMIKKTAVYVTWVPAHKGLGGNQEIDHLVSQGIR--
>tr|Q90DD2|Q90DD2_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
-VAKVEYTKVKLKEGMDGPRLKQWPLSKEKIQALTEICEKMEKEGQLERAPPTNPYNTPTFAIKKKNDKWRMLIDFRELNKMTQEFTEVQLGIPHPAGLK
EMERITVLDIGDAYFSVPLDPEFRQYTAFTIPSVNNQEPGKRYIYKVLPQGWKGSPAIFQATMRQVLEPFRKANPDVLLVQYMDDLLIGSNRGLTEHDKM
VTQLRDMLNNLGFSTPEDKFQKNPPLQWMGYLLYPKKWKLQKIELPEKERWTVNDIQKLVGVLNWAAQIYPGIKTKNLCKMIRGKMTLTEEVQWTELAEA
ELAENRIILNQEQEGRYYREDEPLEATVLKNQDNQWSYKIHQGD--RILKVGKFAKIKNTHTNGIRLLANVVQKIGKESLVIWGKTPFFHLPVEREVWDQ
WWTDYWQ-ATWIPEWDFISTPPLIRLVFNLV-KDPIEKEEVYYIDGSCRNSKEGKAGYVTDRGKEKVLPLEATNQQAELQALLLALKDSPSKVNVVTDSQ
YVLNIITGQPSSDSDIVAQIIEQLVQKEAVYIGWVPAHKGIGGNNEVDRLVSQGIR--
>tr|V5TAJ0|V5TAJ0_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
-SDRIPITKVKLKEGMDGPRVKQWPLSKEKIEGLQKICERLEKEGKIEKAAHGNPYNTPIFCIRKKDNEWRKLIDFRELNKRTQDFFEVQQGIPHPGGLV
EKKNITVLDIGDAYFSIPLDPDYQQYTAFTIPSVNNLSPGTRYIYKVLPQGWKGSPTIFQATVAKILEPIRKKG-KLQIAQYMDDLYVGSDLPKEEHRKE
IQELRDALLYYGLETPEKKYQAEPPYKWMGYELHPQEWKLQKVKIPEQETWTVNDIQKLVGGLNWLSQVYPGIRTKEISKCTKGKKHLLEEVQLSAEAEE
ELEENKKIVKEEQKGVYYRPEEDIWVEIMRLGKGQWGYAVQQEH--GTLKRGKINTGKSAHFNSMQELATVIQKIGREAIVIWGKVPRMKVPAKREDWEQ
WWSDYWQ-STWIPEIEFVSTPYVVKLVWNLM-LEPVRSAPTYWTDGGYRKDNWGKAGWINSSGEEEVITLKGSNQQAELRAVLMALEHGPKRMNLVTDSL
YAFGIVTGQPESNSPLVEQIIQKGLEKEAIHVSWCPAHKGIGGNEIIDKKV--GVR--
>tr|Q99FI1|Q99FI1_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
-SDRIPVTKVTLKEGMDGPKVKQWPLSKEKIEGLQKICERLEAEGKIEKAELGNPYNTPIFCIRKKDNEWRKLIDFRELNKRTQDFMEVQLGIPHPGGLI
EKTHITVLDIGDAYFSIPLDPDYQKYTAFTIPSVNNLAPGTRYVYKVLPQGWKGSPTIFQGTVARILEPFRKRG-QLQIAQYMDDLYLGSDLPLEEHRRA
VQELRDALLYYGLETPEKKYQADPPYKWMGYELHPKQWKLQKVKIPEQDKWTVNDIQKLVGALNWLSQLYPGIRTKEISKCTKGKKHLLEEVQLSAEAEE
ELQDNKQIIKEEVQGVYYIPHEDIWVDIFRLGKGQWGYAVCQKH--GTLRRGKHNTGKNQHFNSMQELASVIQKIGREAIVTWGKVPKMKVPAKREDWEQ
WWSDYWQ-SAWIPEIEFVSSSYVVKLVWNLV-LEPLKEAPTYWTDGGCRKLGAGKAGWINSKGEEEVVNLHGSNQQAELTGVLLALKHGPKRMNLVTDSL
YALGIITGQPYQLPSSRGEIIQAGMAKEAIHVAWCPAHKGIGGNELIDQKV--GVR--
>tr|B7FCB2|B7FCB2_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=Pol PE=3 SV=1
--LKIPITKVSLKPGCSGPRVKQWPLSKKKIEGLQKICDRLEAEGKISRADPGNPYNTPIFAIKKKDNEWRKLIDFRKLNEVTQDFFEVQLGIPHPGGLR
KNKNISVVDIGDAYFSIPLDPEYRQYTAFTVPSVNNESPGKRYVYNVLPQGWKGSPCIFQSTVASLLEIFRGKNPNIQVLQYMDDLYIGSDLDKTEHLNK
VEELRKLLLTWNLETPEKKLQLEPPCNWMGYILHPDKWQIQEIKLPEE-VKTVNDVQKLVGKLNWAAQLYEGIQTKQLCRLIRGNKPLTEEVEWTEEALE
ELEINKQILKEEQSGAYYK-GKDLIAELIKTGPGQWAYTIREIGEKKPLKVGKYGRQRHTHSNELRSMAHAMQKIGTESIVIWGRVPKFRIPIEKDIWDS
WWSDYWQ-VSWIPDTEHVSTPFLAREWYKLV-LEPLPEVETYYIDGSARDSKEGKAGYWTK-SKEKVVSVQTTNQQTELIALKLALEDGGQKMNIITDSQ
YVMGIVKDHPTSESPLVQEIIELLKGKEEIYIDWVPAHKGIGGNTEIDRLVSAGIRK-
>tr|B7UES1|B7UES1_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus - olc GN=pol PE=3 SV=1
--LKIPITKVKLKEGHKPPQIKQWPLSKEKIEALEKICDRLEEEGKIQKAEASNQWNTPIFCIKKKDNEYRKLIDFRALNAATQDFWEVQLGIPHPAGLK
EREQITVLDIGDAYFSIPLDPEYREYTAFTIPSVNNDRPGRRYIYNVLPQGWKGSPCIFQSTVAHLMEPWRKENPEIDLYQYMDDLYVGSDLPRAEHLEK
VKQLRELLRSYNLETPPKKYQEDPPYEWMGYTLYPKRWKIARIKLPEKEEWTVNDIQKLVGQLNWASQIYSGIKTKALCKLIKGPKGLLDKVEWTEEAKE
ELEENREILKEEQEGVMYKEEEPLQCTLC-YTKGTVAYRIWQ--KHGTLKTGRFQRKMTAHTNKFRQMTGAIEKIGKESIVIWGKLPIFQVPTTRKDWEA
WAFDDWQ-VHWIPDIEFVSNSENQRTFWELV-PAPM-EVETFYVDGAYRKSKEGKAGYVSSGGKHKIVHIQSSNQKAEIRAIIEALRDSKSEVNIVTDSL
YAMGIVLEKPESEEPLIQELIKELEKKERIYIGWVPAHKGLGGNQEVDQLVSKGIRK-
>tr|B3CKG8|B3CKG8_SIV Pol protein (Fragment) OS=SIV-wrc Pbt-05GM-X02 GN=pol PE=3 SV=1
--LKIPITKVSLKPGCQGPRIKQWPLSKEKIEGLQKICDRLEAEGKISRAEANNPYNTPIFAIRKKDNEWRKLIDFRGLNAVTQDFFEVQLGIPHPGGLH
KKRNITVLDIGDAYFFIPLDPEYRQYTAFTVPSINNEKPGTRYVYNVLPQGWKGSPCIFQATVASLLEIFRKKHPKVQIVQYMDDLYVGSDYEKKEHLQM
IQELRDLLLTWNLETPEKKLQLEPPCKWMGYILHPDKWEIQEIKLPEE-IRTVNDVQKLIGKLNWAAQIYEGIKTKELCKLIRGNKPLTAEVEWTMEAEA
ELEINRAILKESQQGSYYG-GGDLIAEVIKTGTGQWAYTIKEAGETKPLKVGKFTRIRHTHTNELRTLAHCIQKIGTEAIVIWGKLPKFRIPVEKDIWDM
WWSEYWQ-ATWIPEVEHVSTPFLKREWYTLV-SEPIEGVEEMYIDGSAKESKEGKAGYWTK-TRNKIQKITTTNQQTELIALRMALEDSSDKVNIITDSQ
YVLGIIKDHPTSESPLMQEIIDLLKGKEEIYITWVPAHKGIGGNTEIDALVSAGIRR-
>tr|B7FCA2|B7FCA2_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=Pol PE=3 SV=1
--LKIPITKVSLKPGCTGPRVKQWPLSKEKIEGLQKICDRLEAEGKISKASPGNPYNTPIFAIKKKDNEWRKLIDFRKLNEVTQDFFEVQLGIPHPGGLR
KNKNISVVDIGDAYFSIPLDPDYRQYTAFTVPSVNNESPGKRYVYNVLPQGWKGSPCIFQATVASLLDVFKKQNPTMQILQYMDDLYIGSDFEKPRHLEK
VEELRQLLLTWNLETPEKKLQLEPPCKWMGYILHPDRWQIQEIKLPEE-VRTVNDVQKLVGKLNWAAQIYEGIQTRQLCKLIRGNKPLTEEVTWTEEALE
ELEINKSILKEEQMGAYYT-GKELVAELIKTGSGQWAYSIREAGEKKPLKVGKYGRQRHTHTNELRSLAHAMQKIGTESIVIWGKVPKFKIPIEKDIWDS
WWSDHWQ-VSWIPDTEHVSTPYLAREWYKIV-LEPIVEVETYYIDGSARDSKEGKAGFWTN-SKEKVINLYTTNQQAELAALKLALEDGGSKINIITDSQ
YVMGIVKDHPTSESALVQEIIDLLKQKEEIYIEWVPAHKGIGGNTEIDKLVSAGIRK-
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet (isolate AGM gr-1) GN=gag-pol PE=3 SV=2
-SSQIEETKVQLKEGKDGPKLKQWPLSREKIEALTEICKQMEEEGKLSRIGGENPYNTPVFAIKKKDTQWRMLVDFRELNKATQDFFEVQLGIPHPAGLQ
KKKQITVIDIGDAYYSIPLCKEFRKYTAFTIPSVNNTGPGIRYQFNCLPQGWKGSPTIFQNTAANILEEIKRHTPGLEIVQYMDDLWLASDHDETRHNQQ
VDIVRKMLLEKGLETPDKKVQREPPWEWMGYKLHPNKWTINKIELPPEGEWTVNKIQKVVGVLNWASQIYPGIKTKHTCAMLRGKKNLLEEIVWTEEAEA
EYKNNQGIVQETQEGTYYDPLKELIATVQKQGEGQWTYQFTQEG--AVLKVGRYAKQRETHTNDLRTLAHLVQKICKEALTIWGRLPRVQLPVDKKTWDM
WWQDYWQ-VSWIPEWEFVSTPLLVKLWYSLV-KEPIKGEDVYYVDGAAKVTKLGKAGYLSERGKSRIRELETTNQQAELTAVKMALEDSGENVNIVTDSQ
YVMNILTACPQSNSPLVEQIIQALMKKRQVYLQWVPAHKGIGGNTEIDKLVSKGIRQ-
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM3) GN=gag-pol PE=3 SV=2
-SEQIPITPVKLKEGARGPFLKQWPLSKEKIKALQEICDQLEKEGKISKIGGENAYNTPVFCIKKKDSQWRMLVDFRELNKATQDFFEVQLGIPHPSGFE
KMTEITVLDIGDAYYSIPLDPEFRKYTAFTIPSVNNQGPGTRYQFNCLPQGWKGSPTIFQNTAASILEEIKKELKPLTIVQYMDDLWVGSQEDEYTHDRL
VEQLRMKLSAWGLETPDKKVQKKPPYEWMGYKLWPHKWQISSIELEDKEEWTVNDIQRLVGKLNWAAQLYPGLRTKNLCKLIRGKKNLLETVTWTEEAEA
EYAENKEILKTEQEGTYYKPGRPIRAAVQKLEGGQWSYQFKQEG--QVLKVGKYTKQKNTHTNEFRVLAGLVQKLCKESLVIWGELPVLELPIEREVWEQ
WWADYWQ-VSWIPDWEFVSTPPLVKLWYTLT-KEPIPKEDVYYVDGACRNSREGKAGYITQYGKQRVEKLETTNQQAELMAIKMALEDSGPNVNIVTDSQ
YAMGILTAQPTSDSPLIEQIIALMVQKHQIYLQWVPADKGIGGNEEIDKLVSQGMRK-
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
-SEKIPVTPVKLKEGARGPCVRQWPLSKEKIEALQEICSQLEQEGKISRVGGENAYNTPIFCIKKKDSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLR
KMRQITVLDVGDAYYSIPLDPNFRKYTAFTIPTVNNQGPGIRYQFNCLPQGWKGSPTIFQNTAASILEEIKRNLPALTIVQYMDDLWVGSQENEHTHDKL
VEQLRTKLQAWGLETPEKKMQKEPPYEWMGYKLWPHKWELSRIQLEEKDEWTVNDIQKLVGKLNWAAQLYPGLKTRICKLITGGKKNLLELVAWTPEAEA
EYAENAEILKTEQEGTYYKPGIPIRAAVQKLEGGQWSYQFKQEG--QVLKVGKYTKQKNTHTNELRTLAGLVQKICKEALVIWGILPVLELPIEREVWEQ
WWADYWQ-VSWIPEWDFVSTPPLLKLWYTLT-KEPIPKEDVYYV-GACRNSKEGKAGYISQYGKQRVETLETTNQQAKLTAIKMALEDSGPNVNIVTDSQ
YAMGILTAQPTSDSPLVEQIIALMIQKQQIYLQWVPAHKGIGGNEEIDKLVSKGIRR-
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM155) GN=gag-pol PE=3 SV=2
-SQTIPITPVRLKEGARGPRLKQWPLSKEKIIALQEICKTLEEEGKLSRVGGDNAYNTPVFCIRKKDSQWRMLVDFRELNKATQDFFEVQLGIPHPAGLK
KMKQITIIDVGDAYYSIPLDPEFRKYTAFTIPTVNNEGPGIRYQFNCLPQGWKGSPTIFQNTASKILEEIKKELKQLTIVQYMDDLWVGSQEEGPKHDQL
VQTLRNRLQEWGLETPEKKVQREPPFEWMGYKLWPHKWKLQSIELEKKEQWTVNDLQKLVGKLNWAAQLYPGLRTKNICKLLRGKKNLLDVVEWTPEAEA
EYEENKEILKTEQEGTYYAPEKPLRAAVQKLGDGQWSYQFKQEG--KILKVGKFAKQKATHTNELRVLAGVVQKIGKEALVIWGQLPTFELPVERDTWEQ
WWADYWQ-VSWIPEWDFVSVPPLVTLWYTLT-KEPIPGEDVYYVDGACRQSKEGKAGYITQQGKQRVQQLETTNQQAELTAIKMALEDSGPKVNIVTDSQ
YAMGILTAQPTSDSPLVEQIIAQMVQKEAIYLQWVPAHKGIGGNEEIDKLVSKGVRR-
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate EK505) GN=gag-pol PE=3 SV=3
--SPIETIPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSCPLDENFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSTMTKILEPFRKNNPELVIYQYMDDLYVGSDLEITQHREA
VERLRSHLLTWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQTIQLPEKDTWTVNDIQQLVGKLNWASQIYPGIKVKQLCKLIRGAKALTEVVTLTREAEL
ELAENREILKEPVHGAYYNPDKELIAEIQKQGQGQWTYQIYQDLH-KNLKTGKYAKMRSTHTNDIRQLTEVVQKVALESIVIWGKTPKFRLPVQKEVWET
WWTEYWQ-ATWIPDWEFVNTPPLVKLWYQLE-TEPISGAETYYVDGAARETKLGKAGFVTDRGRQKVTSISTTNQQAELQAVLMALQDAGQEVNIVTDSQ
YVLGIIHSQPDSESELVNQIIEELIKKERIYLSWVPAHKGIGGNEQIDKLVSTGIRK-
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A (isolate KR) GN=gag-pol PE=3 SV=3
--AKVDPIKVILKPGKDGPKVRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDNKWRMLIDFRELNKVTQEFTEIQLGIPHPAGLA
KKRRITVLDIGDAYFSIPLHEDFRQYTAFTLPTVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILVQYMDDILIASDRTDLEHDRT
VLQLKELLNGLGFSTPDEKFQKDPPYKWMGYELWPTKWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTELAEA
ELEENKIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQGE--KILKVGKYAKIKNTHTNGVRLLAHVVQKIGKEALVIWGRIPKFHLPVERETWEQ
WWDNYWQ-VTWIPDWDFVSTPPLVRLAFNLV-KDPIPGEETFYTDGSCRQSKEGKAGYITDRGRDKVRILETTNQQAELEAFAMALTDSGPKANIIVDSQ
YVMGIVAGQPTSESKLVNQIIEEMIKKETLYVAWVPAHKGIGGNQEVDHLVSQGIRQ-
>tr|I6NG25|I6NG25_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKLKALIEICTEMEKEGKISKIGPENPYNTPVFVIKRKDIKWRKLIDFRELNKRTQDFWEIQLGIPHPAGLK
KKRSVTILDVGDAYYSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPMGWKGSPAIFQASMTKILEPFRTKNPEMVICQYIDDLYVGSDLEIGQHRAK
IEELREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKTLTDIVPLTEEAEL
ELAENREILKEPVHGVYYDPAKDLIAEIQKQGQDQWTYQIYQEP-FKNLKTGKYAKKRSAHTNDVKQLTEAVQKIAMESIVIWGKTPKFRLPIQKETWEA
WWMESWQ-ATWIPEWEFVNTPPLVKLWYQLE-AEPIVGAETFYVDGAARETKLGKAGYVTDRGRQKVVSLTTTNQKTELHAIHLSLARIDQKVNIVTDSQ
ICIRSFRAHPDSEIRVLIKITEKLIEKDKVYLSWVPAHKGIGGNEQVDKLVSNGIRK-
>tr|D3GJX4|D3GJX4_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=2
--SQIQYTPVKLKEGKSGPKVKQWASSQGKDRGSQGNSGKDGGGRPMAPASPTNPYNSPVFAIKKKDNKWRMLIDLRELNKATQPVWEVQTGIPHPAGLP
QKRQITVLDIADAYYSIPLDPSFAQYTAFTIPSVNNTAPGERYEFRVLPQGWSASPAIFQHTVHRVLEGFRKKYPDVLIVQYMDDLLVGSDRTEEQHRLV
VKTLRDYLLERGLKTPPEKFQAEPPYQWMGYVLHPKKWTTQPIQIPEEEEWTVNKIQKLVGILNWASQIYSGIKTKHLCKSIRGVPGLTDPVKLTEEAQA
ELEEARQILKEQVSGTYYKEQEDLIADITKLSEGQWGYTIRQS--KGILKTGKYAKAKGAHFNDFHQIAKLMMKVGTESIVTWGRLPTFRLPVQKQDWDG
WWHEHWQ-ATWIPEWEAVHTPPLVRLWYSLV-SEPIKEADTYYVDGAARESKEGKAGYISERGKQSVKALETTNQKAELTAVLMALEDSGEKVNIVTDSQ
YVLNILTEHPTTEHELVEKIIQQLQKKQEVYLQWVPAHKGLGGNEQIDKLVSKGIRK-
>tr|Q70IH2|Q70IH2_SIV Pol protein OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--QQPQVTPVKLKPGFDGPRIKQWPLTTEKLKALQQIVTQMEKEGRLEKAPPTNPYNTPVFVIPKKDTQYRMLIDFRKLNEATQDFWEVQLGIPHPAGLQ
QKEHITVLDLKDAYYSVPLDPDFAQYTAFTVPSINNEGPGQRYIFKVLPQGWVGSPTIFQATADKMLSQFRKAHPDVILIQYMDDLLVASDRSLEQHRKM
VKELRDFLAVWGFETPDAKFQETPPIQWMGYELHPKHWQIQKIDLPEDGQWTVNAIQKLVGVLNWASQLYSGIKTKELCKSIRGVKDLGETISLTEGAEA
ELKEAQEILKESISGSYYRPEKPLIAEISKLGENQWGYTIKQE--KHLLKTGKYHKDKGSHYNPYQQLAKVMAKIGREALVIWGRLPTFRLPVSKVDWDA
WWSEYWQ-VNWIPDWEMVSTPPLLRNFYNLV-SEPIDKAPTYYTDGAARQTKQGRAGYVATNGKQKVVTLETTNQKAELIGVLMALQDSPNKVNIVTDSQ
YALGIIAGTPTSEHQIVEQIIQAMQGKEEIYITWVPAHKGIGGNTEIDKLVSKGIRQ-
>tr|Q699W7|Q699W7_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
---VLDYTPVKLKEGADGPKIKQWPLSREKIEALKDILKPMIEAGQIVPAAPTNPYNSPVFVIKKKDSKWRMLIDLRALNKATQEVWEVQTGIPHPSALP
QMEQITVLDLADAYYSIALDPTFAKYTAFTVPSVNNIQPGERYEFRVLPQGWSASPAIFQASVGRQLQIFREKNPELIIVQYMDDLLVGSDLRKDQHLKK
VAQLRQFLLERGLRTPPEKYQEDPPFHWMGYELHPKKWRLMPVTLPDEEEWTVHKIQKLVGQLNWASQIYSGIKTKHLCRAIRGVPGLTDPVTLSEEAQA
ELRENKEILKQEVSGVYYKEQEPLIAELSKLGKGQWGYVIRQP--KGILKTGKFSRDKGAHYNDFHQLAKAMYKIGTESIVFWGRIPQFRLPVVKEEWDN
WWHNHWQ-AAWIPDWEAIHTPHLVKLWYELV-SEPIPDADTYYVDGAARESKLGKAGYVTEWGKQSVKCLETTNQKAELEAILLALEEGPSKMNIVTDSQ
YALGIILEHPSTEHKIVEKVIQALQGKEQIYLAWVPAHKGIGGNDQVDKLVSKGIRR-
>tr|Q699V9|Q699V9_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
---VLDFTPVKLKEGADGPRIKQWPLSREKIEALKEIIRPMVEAGQIVPTEPTNPYSSPVFVIKKKDNKWRMLIDLRALNKATQDVWEVQTGIPHPSGLP
QMEQITVLDLADAYYSIPLDPQFARYTAFTIPSVNNTQPGERYEFRVLPQGWSASPAIFQATVGRQLKLFKEKYPDLIIVQYMDDLLVGSNLDKVSHLEQ
VKQLRKFLLEKGLRTPPEKYQEDPPYHWMGYELHPKKWHLLPIELPEEEEWTVHKIQKLVGQLNWASQIYSGIKTKHLCKAIRGVPGLTDKVSLSEEAQA
ELRENKETPKQEVSGVYYKEDEPLISEISKIGRGQWGYVIRQT--KGLLKTGKFSKDKGTHYNDFHQLAKAMYKIGTESIVYWGKVPKFRLPVVKEEWDN
WWHNHWQ-ATWIPDWEAVHTPQLVRLWYELV-SEPIPDADTYYVDGAARESKMGKAGYISEWGKQGVKSLETTNQKAELEAILLALEEGPSKMNIVTDSQ
YALGILLEHPTTEHEIVEKIIQALQEKEQVYLNWVPAHKGIGGNDQVDKLVSRGIRR-
>tr|A0A076V6W0|A0A076V6W0_9HIV1 Pol protein OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIXTVPVKLKPGMNGPRVKQWPLTEKKIKALTEICKKIEKKKKISKIGPENPYNTPVFAIKKKSTKWKKLVDFRELNKKTQDFWEVQLEIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKKFRKYTAFTIPSTNNKTPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAKNPNIVIYQYMNNLYVGSDLKIGPHRAK
IKELRNHLLKWGFTTPDKKHQKKPPFLWMGYELHPNKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPEIRVKQLCKLLRGAKALTDIVTLTAEAEL
KLAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPF-KNLKTGKYTKIRTARTNDVKQLTEAVQKIALESIVIWEKIPKFRLPILKKTWDT
WWTEYWQ-ATWIPKWEFVNTPPLVKLWYHLE-TEPIAGAETFYVDGAARDTKKGKAGYVTNRGRQKAVSLTTTNQKAELQAINLALQDSGLKVNIVTDSQ
YALEIIQAQPNSESELVSQIIEQLIKKEKVYLAWVPAHKEIKENEQVNKLVSSKIRK-
>tr|A4GKB8|A4GKB8_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPINTVPVSLKPGMDGPKVKQWPLSEEKIKALTEICNEMEKEGKISRVGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKRSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAQNPEIVIYQYMDDLYVGSDLEIGQHRAK
IEELRDHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDIWTVNDIQKLVGKLNWASQIYAGIKVRQLCRLLRGTKALTDVVTKTKEAEL
ELAENILIVKEPVHGVLYVPEKELIADYRNKGKTNGHIKFFKNH-LKNLKTGKYAKKRSAHTNDVRQLAEAVQKVATESIIIWGKTPKFRLPIQRETWEA
WWRDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIVGAETFYVDGAGNREKQGKAGYVTDKGRQKIVSFTTTNQKTELHAIHLALQDSESEVNIVTDSQ
YALGIIQAQPDSDSEIVNQIIEKIIEKERVYLSWVPAHKGIGGNEQIDKLVSSGIRK-
>tr|Q8UTV7|Q8UTV7_9HIV2 Pol protein (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=3 SV=1
--AKIEPVKVQLKPGKDGPKIRQWPLSKEKILALREICEKMEKEGQLEEASPTNPYNTPTFAIKKKDNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLA
EKRRITVIDVGDAYFSVPLDPDFRQYTAFTLPSINNAEPGKRYIYKVLPQGWKGSPAIFQYSMRKVLDPFRRANNDVTIIQYMDDILVASDRSDLEHDKV
VSQLKELLNDMGFSTPEEKFQKDPPFQWMGYELWPKKWKLQKIQIPEREVWTVNDIQKLVGVLNWAAQLFPGIKTRHICRLIKGKMTLTEEVQWTELAEA
EMQENKIILGQEQEGSYYKEGVPLEATVQKNLANQWTYKIHQG--NKVLKVGKYAKVKNTHTNGVRILAHVVQKIGKEALVIWGQIPMFHLPVERETWDQ
WWTDYWQ-VTWIPEWDFVSTPPLVRLAYNLV-KDPLEKVETYYTDGSCNRTKEGKAGYVTDRGRDKVKPLETTNQQAELEAFALALQDSGPQVNIIVDSQ
YVMGIVAGQPTTESPIVNKIIEEMIKKEAIYVGWVPAHKGLGGNQEVDHLVSQGIRQ-
>tr|Q9IBL9|Q9IBL9_9HIV2 Pol protein (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=3 SV=1
--AKVEPVKVRLKPGMDGPKIRQWPLSKEKIQALREICDKMEQEGQLEEAPPTNPYNTPTFTIKKKDNKWRMLIDFRELNRVTQDFTEVQLGIPHPAGLA
EKRRITVLDIGDAYFSIPLDVDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRKVLDPFRKANEDXIIIQYMDDILVASDRTDLEHDQV
VLQLKELLNKTGFSTPDEKFQKDPPYQWMGYELWPKKWKLQKINLPEKETWTVNDIQKLVGVLNWAAQLYPGIKTKNLCKLIRGKMTLTEEVQWTELAEA
ELQENKIILXQEQEGAYYKEXEPLEATVQKNLDNQWTYKVHQG--NRILKVGKYAKIKNTHTNGVRLLAHVVQKIGKEALVIWGKLPFFHLPVERDTWEQ
WWTDYWQ-VTWIPDWDFVSTPHLVRLVYNLV-KEPLEQTETYYTDGSCNKTKEGKAGYVTDRGKDKVKVLETTNQQAELEAFAMALQDSGPKVNIIVDSQ
YVMGIIAGQPTTESPLVNKIIEEXIKKEXLYVGWVPAHKGIGGNQEVDXLVSQGIRQ-
>tr|Q5S538|Q5S538_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--S--ETVPGKLKPGMDGPKVYQWPLTEEKIKALTEICTDMEKEGKISRIGPENPYNYFQFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFFVPLCGAFRKYTAFTIPSITNETPGIRYQYNVLPQGWKGSPAIFQSSMSKILQPFRKQNPEMVIYQYMDALYVGSALEIGQHRTK
IEELREHLLRWGFTTPIKKHQKEPPFLWMGYELHPDNWTVQAYTLPDKESWTVNDIQKLVGKLV-GSQIYQELKVKQLCKPLGEPKALTEVISLSAEAEL
ELAENREIYKEPVHGVYYDPSKDLLPEIQKQGNGQWTYQIYQEPF-KNLKTGKYARTRGAHTNDVKQLPEAVQKMATERIVIWGKTPKFRLPIQKETWET
WWIEYWQ-ATWIPEWEFVNTPPLVKLWYQFR-GTPIVGAETFYGDGAARETRAGKAGYVTDRGRQKVVPFTTTNQKTELHAVNLPLQDSGFEVNSVPDSQ
YVFGIIQAQPDSEPEFVSQILYQRIKKEKVYLAWVPAHKGIGGNEQEDTFVSAGIR--
>tr|Q5S529|Q5S529_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPSETVPVKFKPGMDGPKVKQWPLPEEKYKALPEICTEMEKEGKISRIGPENPYNTPIFAIKKKDTIWRKLLYFRELNQRTQDFWEVQLGIPHPAGLK
KKKSGTVLDVGDAYFSVPLCEDFRKYTAFTIPSINNATPGIRYQYNVLPQGWKGSPAIFQSSITKIFEPFRKQNPEKAIYQYMDDLYVRSDSKYGQHTTK
IEELREHLLRWGFTTPEKKHQKEPPFLWMGYELHPVKWTVQPIQLPEKEDWTVNAIQKLLRKLYWASQIYPGIKVWQLWKLLMGTKALPEVLPLSEEAEL
ELAENREILQEPVHGVYYAPSKDLIAEIQKQGQGQWTYQIYQEPF-IHLQTGKYARTRGAHTIHVQQLSEAVQKISTEGIVIWGKTPKFRLPIQKETWET
WWIEYWQ-ATWIPAWEFVNTPPLVKLWSITK--GPIIGAETFYVDGAARETKIGKAGYVTDRGRQKVVPLTTTNQKTELQAVYLALQDSGLEVNIVTDSQ
YVLGIIQAQPDSQSELVSQIIEQLIKKERVYLAWVPAHKGIGGNAQVDKLVSQGIR--
>tr|V9QJN4|V9QJN4_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--CPIETVPVKLKPGMDGPKIKQWPLTEEKIKALMEICTELEKEGKISKIGPENPYNTPVFAIKKKGTRWRMLMDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSATVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPEIVIYQYVDDLYVGSDLEIGQHRAK
IKELREYLLRWGFYTPDKKHQEEPPLLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGTKALTEVVPLTEEAEL
ELAENREILKQPVHGVYYDPSKDLVAEVQKQGHDQWTYQIYQEPF-KNLKTGKYARKRSAHTNDVRQLAEVVQKISTEGIVIWGKTPKFKLPIQKETWEA
WWREYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPISGAETFYVDGAARETKLGRAGYVTDRGRQKAVSLTTTNQKTELHAIHLALQDSGSEVNIVTDSQ
YALGIIQAQPDSDSEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQVDKLVSSGIR--
>tr|C5HAX4|C5HAX4_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKIKQWPLTEEKIRALTEICTEMEKKRKISKIGPENPYNTPIFAIKKKNTKWKKLVDFRELNKRTQNFWEVQLGIPHPAGLK
KKKSVTVLDVGNAYFSVPLDKEFRKYTTFTIPSTNNATPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRTKNPEIVIYQYMNDLYVGSNLKIGQHRAK
IKELRTHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNNIQKLVGKLNWASQIYPGIRIKHLCRLLRGAKALTDIVTLTEEAKL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGHGQWTYQIYQEPF-KNLKTGKYAKIRSAHPNDIKQLTEAVQKISTESIVIWGKTPKFRLPIQKETWDI
WGTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPIAGAETFYVDGAAIETKEGKAGYVTDRGRQKVVSLTTTNPKTELQAIYLALQDSGSEVNIVTDSQ
YALGIIQAHPDSESELVNQIIEQLIKKDKVYLSWVPAHKGIGGNEQIDKLVSAGVR--
>tr|Q87108|Q87108_SIVSA Pol protein (Fragment) OS=Simian immunodeficiency virus - agm.sab-1 PE=3 SV=1
--REIEPIKVHLKPGQDGPRIRQWPLSKEKIEALKAICEDLEKQGHLERIGPENPYNTPVFAIRKKDTQWRILMDFRQLNKSTQDFQEVQLGIPHPAGLQ
QREQITVLDIGDAYFSCPLDPDFQKYTAFTIPSVNNREPGIRYQYKVLPQGWKGSPTIFQTTANKILQEFRQKNPDVDIYQYMDDMLIASDRPKAEHLVM
VQQLRDYLETWGFKTPEKKFQKDPPYLWMGYELYPKKWQLQEITLPEREEWTVNDIQKLVGKLNWASQIYTGIKTKHLCRLIRGARPLTEIVQWTEEAEL
ELEENRQILRQKQQGQYYDPALPLRAKVLKLGDGQWGYQIYQPEN-KILKVGKYAKIKTAHTNELRMLAGLVQKIGKESIVIWGQIPIMELPVERELWEQ
WWSDYWQ-VTWIPEWEMVSTPQLIRLWYKLV-KDPIPGEAVYYVDGAARNSKEGKAGYLTDRGDQKVVALETTNQKAELEAILLALRDSGSKVNIITDSQ
YAMGIIAGEPTSDNNIVQQIIEELIKKEAVYIAWVPAHKGVGGNEEIDKLVSQGIR--
>tr|A0A0F7SE36|A0A0F7SE36_SIV Pol (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--REIQPVKVHLKSGMDGPKLKQWPLSKEKILALTAICEQLEKDGHLEAIGPENPYNTPVFAIRKKDSQWRMLMDFRQLNKATQEFHEVQLGIPHPAGLQ
KREQITVLDIADAYFSCPLDPDFQKYTAFTIPSVNNSAPGKRYQYKVLPQGWKGSPTIFQTTAHKILQEFRNKHPEVDLYQYMDDLLIGSDLKRQEHLDV
VEELRKYLESWGFQTPEKKFQKDPPYLWMGYELSPTKWQLQAVELPQQDQWTVNDIQKLVGKLNWASQLYSGIKTKALCKLIRGAKPLTEIVEFTEEAEL
ELAENREILKQKQEGTYYDPTLPLKAKILKLGEGQWGYQIYQPEN-KVLKVGKYAKVKTAHFNELRMLAGVVQKVGKESIVIWGKVPEMELPIERETWEQ
WWTDYWQ-VSWVPEWEMVSTPPLIRLWYRLV-KDPIPGEKVYYVDGAARNSKQGKAGYLTDLGDSKVISLETTNQKAELEAILLALRDSGKKVNIVTDSQ
YAMGIVAGEPTSDNPIVQNIIEELIKKEAVYLAWVPAHKGIGGNEDIDKLVSQGIR--
>tr|E3W238|E3W238_SIVSA Pol protein (Fragment) OS=Simian immunodeficiency virus - agm.Sab92018 GN=pol PE=3 SV=1
--NSIEPVKVQLKPGKDGPRLKQWPLSKEKIEGLKEICKQLETEGHLERIGPENPYNTPVFAIRKKDSQWRMLMDFRELNKATQDFQEVQLGIPHPAGLQ
QREQITVLDIADAYFSCPLDEDFQKYTAFTIPSVNNKEPGIRYQYKVLPQGWKGSPTIFQTTANKILQTFRVKYPEVDIYQYMDDLLVASDLEKGKHLKV
VQELRDHLETWGFKTPEKKFQKDPPYHWMGYELYPKKWALQSIELPEKEEWTVNDIQKLVGKLNWASQIYTGIKTRHLCKLIRGAKPLTEIVQWTEEAEL
ELEENRQILKTKQEGAYYDPHLPLRAKVLKLGDGQWGYEIYQPEH-RILKVGKYAKIKTAHTNEVRMLAGVVQKIGKESIVIWGKIPTMELPIERDVWEQ
WWTDYWQ-VTWIPEWEMVSTPQLIRLWYKLV-KEPIPGEAVYYVDGAARNSKEGKAGYITDRGDHKVITLETTNQKAELEAVLLALRSSGPKVNIVTDSQ
YAMGIVAGEPTSDNILVQQIIEELIRKEAVYISWVPAHKGVGGNEEIDKLVSQGIR--
>tr|Q1A240|Q1A240_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SPIDTVKVFLKPGMDGPKVKQWPLSKEKIEALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQEFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSCPLDPDFRKFTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMTKILEPFRTKHPEIIIYQYMDDLYVGSDLPIEEHRKR
VEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQQIKLPEQEVWTVNDIQKLVGKLNWASQIYPGIKIKQLCKLIRGAKGLTEVVALTPEAEL
ELAENQEILKEPVHGAYYDPEKELIAEIQKQGQGQWTYQIFQEP-HKNLKTGKYGKQRAAHTNDIRQLAETVQKIATESIVIWGKTPKFRLPVQKEMWEA
WWADYWQ-ATWIPEWEFINTPPLVKLWYQLE-TEPIEGAETYYVDGAARETKRGKAGYVTNRGRQKIHSLETTNQKAELQAVLMALQDSGQEVNVVTDSQ
YVLGILQSHPDSESDIVNQIIEELIKKEKIYLSWVPAHRGIGGNEQVDKLVSSGIR--
>tr|C6GAP2|C6GAP2_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIDTVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
RKKSVTVLDVGDAYFSVPLDKDFRKYTAFTVPSVNNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILDPFRAKNPDIIIYQYMDDLYVGSDLEIGQHRTK
IEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVRKLNWASQIYPEIKVKQLCKLLRGAKALTDIVPLTAEAEL
ELAENREILKEPVHKVYYDPAKDLIAEIQKQRQRQWTYQIYQEP-FKNLKTGKYAKMRSAHTNDIKQLTEAVQKISTESIIIQGKIPKFKLPILKETQDT
QWTEYWQ-ATQIPEQEFVNTPPLVKLQYQLE-TEPIARAETFYVDKASRETKKEKAGYVTDRGRQKAVSLTTTNQKAKLQAIQLALQDSRSEVNIVTDSQ
YALRIIQAQPDSESELVNQIIKQLIQKEKVYLSQVPAHKKIRGNEQVDKLVSARVR--
>tr|A0A076V453|A0A076V453_9HIV1 Pol protein OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICTEMEKEGKISRIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMTKILEPFRAQNPDIVIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEIVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGEGQWTYQIYQEP-WKNLKTGKYAKMKSAHTNDVRQLAESVQKITTESIVIWGRTPKFRLPIQKETKTH
SRQSISK-PPGFLSKNLSIPLPLVKLWYQLK-KKPIVRAETFYVDKAANKEKSGKARYVTDRRRQKVVPLTTTNQKTKLQAIYLALQDSRLKVNIVTDSQ
YALGIIQAQPDSESELVSQIIEQLIKKEKVYLAKVPAHKGIRRNEQVDKLVSAKIR--
>tr|A0A0H3Y7P4|A0A0H3Y7P4_9HIV1 Truncated pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMNGPRVKQWPLTEEKIKALKKICKKMEKEGKITKIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLEIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPDIVIYQYMDDLYVGSNLEIGQHRAK
IEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDNWTVNNIQKLVRKLNWASQIYAGIKVKQLCKLLRGAKALTDIVPLTEEAEL
KLAENREILKEPVHGVYYDPSKKLIAELQKQGDAQWTYQIYQEP-YKNLKTEKYAKKKSAHTNDVRQLTDTVQKITMESIVIWGKTPKFRLPIQKETWET
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIAGAETFYVGGAARETKLGRAGYVTDRGRQKVVSLTTTNQKTELQAIKIALQDSGPEVNIVTDSQ
YALGIIQAQPDSKSELVNQIIEQLIKKDKVYLSWVPAHKKIGGNKQVNKLVSSEIR--
>tr|B3VDJ7|B3VDJ7_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICAFLEEEGKISKIGPENPYNTPVFAIKKKGTKWRKVADFRELNKRTQDFWEVQLGIPHPAGIK
KNKSVTVLDVGDAYFSIPLDEEFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKENPEIVIYQYVDDLYVGSDLEIGQHRAK
VEELRQHLWKWGFYTPDDKHQKEPPFQWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAEL
ELAENREILKNPVHGVYYDPSKELIAEIQKQGQSQWTYQIYQEP-FKILKTGKYAKMKGAHTNDVRQLTEAVQKIALESIVIWGKTPKFRLPIQKETWDT
WWTEYWQ-ATWIPEWEFVNTPPLVKLWY-QLETEPIIGAETFYVDGAAHREKAGKAGYVTDRGRQKVVSFMTTNQKTELQAIYLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVSKIIEELIKKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|V9QK53|V9QK53_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIAPVPVKLKPGMDGPKVKQWPLSKEKIEALTAICQEMEQEGKISKIGPENPYNTPIFAIKKKDTKWRKLVDFRELNKRTQDFWEVQLGIPHPGGLK
QKRSVTVLDVGDAYFSCPLDPDFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKDNPELEICQYMDDLYVGSDLPLAEHRKR
VESLREHLYQWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPNKDVWTVNDIQKLIGKLNWASQIYQGIRVRELCKLIRGTKSLTEVVPLSKEAEM
ELEENREKLKEPVHGVYYQPDKDLWVNIQKQGEGQWTYQIYQDE-HKNLKTGKYTRQRASHTNDIRQLAEVIQKVSQESIVIWGKLPKFKLPVTRETWET
WWADYWQ-ATWIPEWEYVSTPPLIKLWY-RLESEPIMGAETYYVDGAANRDKLGKAGYVTEQGKQKIIKLDTTNQKAELMAVLLALQDSKEKVNIVTDSQ
YVLGIISSQPTSESPIVQQIIEELTKKEQVYLTWVPAHKGIGGNEKIDKLVSKDIRR-
>tr|Q6H1S4|Q6H1S4_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALKEICTEMEKEGKISRIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRAKNPEIVIYQYMDDLYVGTGLQIGQIEAK
IEHLLERVLKWGFTTPDKEPQKEPPFLGMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIVTLTAEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEP-FKNLKTGKYAKRRSAHSNDVRQLTEAVQKIALESIVIWGKTPKFKLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWY-QLETEPIAGAETFYVDGASSREKKGKAGYVTDRGRQKAVSLTTTNQKAELQAIQLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESEIVNQIIEELIKKERVYLSWVPAHKGIEGNEQVDKLVSAGIRK-
>tr|A0A075QB59|A0A075QB59_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIDTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPIFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTKNPDIEIYQYMDDLYVGSDLEIGQHRAK
VEELREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGAKALTDIVPLTEEAEL
ELAENREILKEPVYGVYYDPAKDLIAEVQKQGHDQWTYQIYQEP-FKNLKTGKYAKGGLPTL-MMXNSXRGVQKIAVESIIXWGKTPNLGYX-XKETWET
WWTDYWQ-ATWIPEWEFVNTPPLVKLWY-QLEKEPILGVETFYVDGAANREKMGKAGYVTDRGRQKVVTLTTTNQKTELQAIQLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEQLINKERVYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|G8I1W4|G8I1W4_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKSTKWRKLVDFRELNRRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLYEDFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKHNPDIVIYQYMDDLYVGSDLEIEQHRTK
IEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKELCKLLRGPKALTEVVPLTREAEL
ELAENREILKEPVHGVYYDPSKDLTAEIQKQGLGQWTYQIYQEP-FKNLKTGKYAKTKGTHTNDVKQLAEAVQKITKESIVSMGKGSKIKTSHTKRNMGN
MVDRVLA-SHLDSGMGICQYPSLVKLWY-QLEKEPIVGAETFYVDGAANREKSGKAGYVTDRGRQKVVPLTTTNQKTELQAINLALQDSGLEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRK-
>tr|A0A0C5KLH3|A0A0C5KLH3_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKISKIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPEIVIYQYMDDLYVGSDLEIGQHRAK
IEKLREHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIRIRELCKLLRGAKALTDIVTLTEEAEL
ELAENREILKEPVHGAYYDPSKDLIAEIQKQGPSQWTYQIYQEP-FRNLKTGKYAKGGTAHTNDVEQLVEAVLRKPMESIVLWGKTSKFKIPIQKETWGT
CWRDYCQ-VTGIPEWDFVSTPLIVKIWY-KLEKESRAGVETFYVEGADSREKMGRAGYRVDRGRQKIFFLRTPNQRIEFQAIQINLQDSGSEVSIVTEKQ
YALGFSHAQPDSESEIDSKIIKQLIKSEKVYLSWIPAHKGFGGNEQVDKLVSNGIRK-
>tr|D2XKN8|D2XKN8_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICTEMEKEGKISKIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTENPEMVIYQYMDDLYVGSDLEIGQHREK
IEQLRAHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQSIKLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEIVPLTIEAEL
ELAENREILKEPVHGVYYDPEKELVAEIQKQGEGQWTYQIYQEP-FKNLKTGKYAKRRSAHTNDVKQLTEVVQKVSTESIVIWGKTPKFRLPIQKETWEA
WWMEYWQ-ATWIPEWEFVNTPPLVKLWY-RLETEPIAGAETFYVDGAANREKLGKAGYVTDKGRQRVVTITTTNQKTELHAIHLALQDSGSEVNIVTDSQ
YVLGIIQAQPDSESELVNQIVEELIKKDKVYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|A0A0D4CHH7|A0A0D4CHH7_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SPIEVVPVKLKPGMDGPRVKQWPLSKEKIEALTAICQEMEQEGKITKIGPENPYNTPIFAIKKKSSKWRKLVDFRELNKRTQDFWEVQLGIPHPGGLK
QRKSVTVLDVGDAYFSCPLDPDFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQHSMTKILEPFRKENPEIEIYQYMDDLYVGSDLPLPEHRQR
VEKLREHLYAWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPERESWTVNDIQKLVGKLNWASQIYPGIRVKELCKLIRGTKALTEVIPLTREAEL
ELEENKEILKEPVHGVYYQPEKDLIVDIQKQGEGQWTYQIFQEE-HKNLKTGKYARQKATHTNDIRQLAEVIQKVSQESIVIWGKLPKFRLPVNRTLWEA
WWSDYWQ-ATWIPEWEFVSTPPLIKLWY-QLEKDPIPGTETFYVDGAANREKLGKAGYVTDRGRQKIIKLETTNQKAELEAVLLALKESGKQANIVTDSQ
YVLGIISATPDSDSPLVQRIIEEMTKKDKVYLSWVPAHKGIGGNEEIDKLVSKDIRR-
>tr|A0A076V8R6|A0A076V8R6_9HIV1 Pol protein OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIDTVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFXAKNPDIVIYQYXDDLYVXSDLEIGQHRAK
IEELRAHLLTXGFTTPDKKHQKEPPFLXMXYELHPDKXTVQPIQLPDKDSXTVNDIQKLVXKLNXASQIYPXIKVKQLCKLLXGAKALTAVVPLTTEAEL
ELAENXEILKXPVHXVYYDPSKDLIAEVQKQXQXQXTYQIYQEP-YKNLKTGKYAKMXSAHTNDVRQLTEAVQKIAQESIVIXXKTPKFKLPILKXTXET
WXSEYWQ-ATIPE--KFVNTPPLVKL-Y-QIETEPIAGAKTFYVDEASNREKKRKAKYVTDRRRQKVVSLTTTNQKAKLQAVHLALQDSGSEVNIVTDSQ
YALRIIQAQPDSESELVSQIIEQLINKEKVYLA-VPAHKRIRRNEQVDKLVSNKIKK-
>tr|Q5K6J6|Q5K6J6_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SPITPVPVKLKPGTDGPRVKQWPLSKEKIEALTEICREMEKEGKISRIGPENPYNTPIFAIRKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVPDVGDAYFSCPLDENFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKVLDPFRQKNPELVIYQYMDDLYVGSDLSLEEHRKR
VEQLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPQKENWTVNDIQKLVGKLNWASQIYPGIKIKQLCKLIRGAKALTEIVEMTREAEL
ELEENREILKEPVHGTYYDPEKELIAEVQKQNNGQWTYQIFQET-GRNLKTGKYARQRAAPTNDIRQLAEVVPKVSPESIILWGTVPKFKLPVQREVWEA
WWTDYWQ-ATWIPEWEFVRTPPLVKLWY-QLEKEPIQGAETYYVDGAANRERRGKAGYVINNGKQKVISLETTNQKAELEALRIALQDSGQEVNVVTDSQ
YVLGIINSQPDSESEIVNQIIEELIKKEKVYLTWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|Q5MYY8|Q5MYY8_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SSIETVPVKLKPGMDGPRIKQWPLSAEKIKALTEICQEMEKEGKISKIGPENPYNTPIFAIKKKSSKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
EKKSVTVLDVGDAYFSCPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPDITVYQYMDDLYVGSDLDITQHRQK
VEELRQHLLHWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKEVWTVNDLQKLIGKLNWASQIYPGIKIKQLCKLIRGTKRLTDVVPLTPEAEL
ELAENREIVSTPVHGVYYNPDKELIAEVQKQGEGQWTYQIFQEQ-HRNLKTGKYARQRSTHTNDIRQLAEVIQKIAVESIVIWGKTPRFRLPVQKESWET
WWAEYWQ-ATWIPEWEFINTPPLVKLWYS-LETDPIPTADTYYVDGAANREKKGKAGYITDKGKQKIISLETTNQQAELGALYLALQDSEQQVNIVTDSQ
YVLGIIQSQPDSESELVNQIIEELIKKDKVYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>sp|P19560|POL_BIV29 Gag-Pol polyprotein OS=Bovine immunodeficiency virus (strain R29) GN=gag-pol PE=1 SV=2
--HTEKIEPLPVKVRGPGPKVPQWPLTKEKYQALKEIVKDLLAEGKISEAAWDNPYNTPVFVIKKKGGRWRMLMDFRELNKITVKGQEFSTGLPYPPGIK
ECEHLTAIDIKDAYFTIPLHEDFRPFTAFSVVPVNREGPIERFQWNVLPQGWVCSPAIYQTTTQKIIENIKKSHPDVMLYQYMDDLLIGSNR--DDHKQI
VQEIRDKLGSYGFKTPDEKVQEE-RVKWIGFELTPKKWRFQPRQLKIKNPLTVNELQQLVGNCVWVQPEV-KIPLYPLTDLLRDKTNLQEKIQLTPEAIK
CVEEFNLKLKDPEWKDRIREGAELVIKIQMVPRG-IVFDLLQD-G-NPI-WGGVKGLNYDHSNKIKKILRTMNELNRTVVIMTGREASFLLPGSSEDWEA
ALQKEES-LTQIFPVKFYRH---SCRWTSIC-GPVRENLTTYYTDGGKKGK-TAAAVY-WCEGRTKS-KVFGTNQQAELKAICMALLDGPPKMNIITDSR
YAYEGMREEPEAREGIWLEIAKILPFKQYVGVGWVPAHKGIGGNTEADEGVKKALE--
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
--HTKQIQPLPVKLHGPGPRVPQWPLTLEKYKALKEIVEELLKDGKISRTPWDNPFNTPVFVIKKKGSKWRMLMDFRALNKVTNKGQEFQIGLPYPPGIQ
QCEHITAIDIKDAYFTIPLDENFRQYTAFSVVPVNREGPLERYHWNVLPQGWVCSPAIYQTTTQEIIAEIKDRFPDIVLYQYMDDLLIGSDR--PDHKRV
VSEIREELGAYGFKTPEEKIQEE-QVQWLGYELTPKRWRFQPRQIKIKKVVTVNELQQMIGNCVWVQPEV-KIPLSPLSDLLKGKTDLKDKIKLTEEAIQ
CLETVNKRLKDPEWKERIKEGTELVVKIQLIPEG-VVYDLLQD-G-NPI-WGGVKGWDYNHANKIKKMLSIMKKLSRIVMIMTGREVSFLIPGDSEDWES
ALQRINT-LTEIPEVKFYKH---ACRWTSVC-GPVIERYPTYYTDGGKKGS-KAAAAY-WREGKIRR-EVFGTNQQAELKAVLMALQDGPAKMNIITDSR
YAFEGMREEPEGREGLWKEIGEELRRKEYVGVSWVPGHKGIGGNTEVDQEVQKALQ--
>tr|Q6H0K6|Q6H0K6_9HIV2 Virion infectivity factor (Fragment) OS=Human immunodeficiency virus 2 GN=pol/vif PE=4 SV=1
--GKEALVIGGLKPGKDGPKLRQWPLSKEKLEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDNKWRMLIDFRELNRVTQDFSEVQLGIPHPAGLA
EKKRITVLDVGDAYFSIPLCEDFRQYTAFTLPSINNAEPGKRYIYKVLPQGWKGSPTIFQYTMRNLLEPFRKANEDAVIIQYMDDILIASDRNDLEHDQL
VSQLKELLNKTGFSTPDEKFQKDPPHKWMGYELWPKKWKLQKIELPERDVWTVNDIQKLVGVLNWAAQVYPGIKTKHLCKLIKGKMTLTEEVQWTEMAEA
EFAENKIILSQEQEGAYYREEENLEATVLKNQDNQWTYKIHQG--DRTLKVGKFAKVKNTHTNGVRLLAHVVQKIGKEAIVIWGKIPMFHLPVEREVWEQ
WWTDYWQ-VTWVLDWDFVSTPPLVRLAYNLV-KEPLL-EETYYTDGSCNRSKQGKAGYVTDRGKDRVKPLETTNQQAELEAFAMALEDSGPKVNIVTDSQ
YIMGIIAGQPTTESPLVSKIIEELIRKEAVYVGWVPAHKGIGGNQEVDHLVSQGIR--
>tr|K4MLL8|K4MLL8_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--AKVEPVKVTLKPGKEGPKLKQWPLSKEKIEALREICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDNKWRMLIDSRELNKVTQDFNEVQLGIPHPAGLA
EKRRITVLDIGDAYFSIPLWEEFRQYTAFALPSVNNAEPGKRYIYKVLPQGWKGSPAIFQDTMRKVLEPFRKANEDATIIQYMDDILIASDRNDLEHDQL
VAQLKELLNGLGFSTPDDKFQKDPPHKWMGYELWPKKWKLQKIKLPERDRWTVNDIQKLVGVLNWVAQLYPGIKTKHLCKLIKGKMTLTEEVQWTELAEA
ELAENRIILEQEQEGAFYREEENLEATVQKNQDNQWTYKIHQG--SRVLKVGKFAKIKNTHTNGVRLLAHVVQKIGKEALVIWGKIPFFHLPVEREVWEQ
WWTDYWQ-VTWIPDWDFVSTPPLVRLVFNLV-KDPIPGEETFYTDGSCNRSKEGKAGYVTDRGREKVKPLETTNQRAELEAIAPALRDAGPKANVVTDSQ
YVMGIVAGHPTTDSPLVNEIIEELIKKEAIYVGWVPAHKGLGGNQEVDHLVSQGIR--
>tr|G8Z0M9|G8Z0M9_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SKIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKSSKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
QKKSVTVLDVGDAYFSCPLDESFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEITIYQYMDDLYVGSDLAITEHRKK
VEELRAHLLHWGFTTPDKKHQKEPPFQWMGYELHPDKWTVQPIKLPEQDIWTVNDIQKLVGKLNWASQIYPGIKIKQLCKLIRGTKSLTEVVPLTAEAQL
ELAENREILAEPIHGVYYDPQKELIAEIQKQGGGQWTYQIYQET-HKNLKTGKYAKQRAAHSNDVRQLAEVVQKVANECIVIWGKTPRFKLPINREVWET
WWSDYWQ-ATWIPEWEFVSTPPLIKLWY-QLESEPIEQAETYYVDGAANREKQGKAGYVTNNGQQKIIALSTTNQKAELEALKLALEDSGPKVNIVTDSQ
YVLGIINSQPDSESPLVNDIIEQLMKKEKIYLSWVPAHKGIGGNEQVDKLVSQGIRR-
>tr|S4SU18|S4SU18_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--SPIETVPVALKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSCPLDENFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPYRKQNPEIIIYQYMDDLYVGSDLKIELHRQK
VEELRDHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWAVQPIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGTKSLTEVVTLTKEAEL
ELAENREILANPVHGVYYDPSKELIAEVQKQGQSQWTYQIYQEQF-KNLKTGKYAKTRSAHTNDVKQLTEVVQKIALESIVIWGKIPKFRLPIQKETWEA
WWTNYWQ-ATWIPEWEYVNTPPLVKLWY-QLETEPITGAETFYVDGAANRDKLGKAGYVTDRGKQKIISLTTTNQKAELQAIQLALQDSGSEVNIVTDSQ
YALGIIQGQPDSESEIVNQIIESLINKERVYLSWVPAHKGIGGNEEVDKLVSSGIRR-
>tr|F4N9P7|F4N9P7_SIV Gag-Pol polyprotein OS=Simian immunodeficiency virus GN=gag-pol PE=4 SV=1
-SEKIPITKVSLKEGATGPRVKQWPLSKEKIEGLQKICDRLEAEGKISRADPGNPYNTPIFAIKKKDNEWRKLIDFRVLNEMTQDFHELQLGIPHPAGLK
KCKQITVVDVGDAYFSIPLDPDYRKYTAFTIPSVNNQAPGKRYVYNVLPQGWKGSPCIFQGTVAGLLDRFREKHPEVQLYQYMDDLLIGSDHEKQKHEEL
VKQLRELLMEWNLETPEKKFQGDPPYKWMGYILHPDRWEIEKLKLPLEDRPTVNDIQKIVGVINWASQLYEGLRTKELCKMIRGNRPLTEEVQMTEEAKE
EYENNQEVLKQAISGHYYDPTKELICRVQKVKSGILTFQWMQDK--KVLRAGRYQKKGATHENPCQQLAAAIQKIGKESIVIWGFVPKIQVPIQREVWGQ
WWTDYWQ-CTWVPELEFVSTPKLEQEWYTLA-TEPVAG-DTYYVDGAAKEGKTGKAGYLTQSGKSKVVELDTTNQQAELIAIKLALEDSKSKVNIVTDSQ
YALRLLSKRPTTDSELVKEIIELIKGKDEVYLSWVPAHKGIGGNQEIDQLVSQGIRK-
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1) GN=gag-pol PE=3 SV=2
-SDKIPITKVKLKPGVDGPRIKQWPLSKEKIVGLQKICDRLEEEGKISRVDPGNNYNTPIFAIKKKDNEWRKLIDFRELNKLTQDFHELQLGIPHPAGIK
KCKRITVLDIGDAYFSIPLDPDYRPYTAFTVPSVNNQAPGKRYMYNVLPQGWKGSPCIFQGTVASLLEVFRKNHPTVQLYQYMDDLFVGSDYTAEEHEKA
IVELRALLMTWNLETPEKKYQKEPPFHWMGYELHPDKWKIEKVQLPLAEQPTVNEIQKLVGKLNWAAQLYPGIKTKQLCKLIRGGLNITEKVTMTEEARL
EYEQNKEILAEEQEGSYYDPNKELYVRFQKTTGGDISFQWKQGN--KVLRAGKYGKQKTAHSNDLMKLAGATQKVGRESIVIWGFVPKMQIPTTREIWED
WWHEYWQ-CTWIPEVEFISTPMLEREWYSLS-PEPLEGVETYYVDGAARDSKMGKAGYITDRGFQRVEEYLTTNQQTELHAVKLALEDSGSYVNIVTDSQ
YVVGILASRPTTDHPIVKEIIELMKGKEKIYLSWLPAHKGIGGNEQIDKLVSSGIRK-
>tr|B0LB85|B0LB85_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--SPIGTVPVKLKPGMDGPRVKQWPLTEEKIKALTEICQEMEKEGKISKIGPENPYNTPIFAIKKKDEKWRKLVDFRELNRRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSCPLDESFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRQQNPELTIYQYMDDLYVGSDLEIGEHRKK
VELLRQHLLTWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPQKETWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIKGAKALTEVVAMTQEAEM
ELEENREILKDPVHGVYYDPEKELIAEVQKQGNSQWTYQIFQEQH-KNLKTGKYARQRSAHTNDIRQLAEVVQKVATESIVIWGKTPKFRLPVQKEVWET
WWSEYWQ-ATWIPDWEFVNTPPLVKLWYQL-ETEPIPGAETFYVDGAARDTKKGKAGYVTDRGRQKIVNLETTNQKAELTAVYLALQDAEHIVNIVTDSQ
YVLGIIHSQPDSESELVNLIIEELIKKEKSYLSWVPAHKGIGGNEQVDKLVSSGIRR-
>tr|V9QHW2|V9QHW2_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTAICDELEKEGKITKIGPDNPYNTPIFAIKKKSTKWRKVVDFRELNKRTQDFWEVQLGIPHPAGLK
KNKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVICQYVDDLYVGSDLEIGQHRTK
IEELREHLLKWGFTTPDKKYQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLKGTKALTDIVPLTEEAEL
ELAENREILKEPVQGAYYDPSKELIAEIQKQGQSQWTYQIYQE-PFKNLKTGKYAKMRTAHTNDVKQLTEAVQKISMESIVIWGKIPKFRLPIQKETWET
WWTDYWQ-ATWIPEWEFVNTPPLVKLWY-QLEKDPIAGAETFYVDGAANREKIGKAGYVTDKGRKKVVTLTTTNQKTELQAIYIALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEQLIKKERVYLSWVPAHKGIGGNEQVDKLVSSGIRK-
>tr|I3IRT2|I3IRT2_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=4 SV=1
-------------------------------------------------------------------ARWPA-----------QT-----FAHRRWGKFY
KCCSAG-------SLLGGSNGDFRKYTAFTIPAINNQGPGVRYQYNVLPQGWKGSPAIFQTTANRILQPFREKHPDVVIYQYMDDLFVGSDRTKLEHDKM
IKELRDHLRFWGFETPDKKFQDKPPYLWMGYELHPKSWTVQEIKLPEKETWTVNDIQKLVGKLNWASQIYSGLKTKALCKLIRGAKALDEIVTMTREAEL
EFEENKQILKEKLHGVYYDEKKPLVAKVQKLEGGQWAYQIEQDKG-RPLKTGKYAKQKTAHTNEIRMLAGLVQKICKEAIVIWGQLPSFELPIERETWEQ
YWQDHWQ-VSWIPEWEFVSTPPLIRLWYNLV-KDPIPGEEVYYVDGAARNSKQGKAGYVTNRGKEKVKELETTNQKAELEAVLLALKDSGPKVNIVTDSQ
YVYGILEAQPESDSPIVTEIINQLIGKEAVYLSWVPAHKGIGGNEEVDKLVSRGIR--
>tr|Q8UMQ4|Q8UMQ4_9HIV1 Pol (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVALKPGMDGPKIKQWPLXEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKSTRWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPEIIIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLKWGFFTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKVNWTVNDITEVSGKLNWANQIYAGIRDRQLCKLLRGAKALTEIVPLTAEAEL
ELAENRDILKEPVHGVYYDPSKDLIAEIQKQGHGQWTYQIYQEP-YKNLKTGKYARVRSAHTNDIKQLTEVVQKITTESIVIWGKTPKFRLPIQKGTWET
WWTDYWQ-APWIPEWEF-NTPPLVKLWYQ-LDKGPIVGAETFYVDGAANREKRGKAGYVTDRGRXKVVALTTTNQKTELQAIHLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEKLIGKERVYLSWVPAHKGIGGNEQIDKLVSNGIR--
>tr|Q6VG40|Q6VG40_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
-------LEVTLKAGKEGPKLKQWPLSREKIEALTQITQEMLKLGQLEPTEPNNPYNSPCFAIKKKKSKWRMLIDFRELNKATQDFFEVQLGIPHPAGLE
KMDHVTIVDMKDAFYSIPLWEPFRKYTAFSIPSLNNAEPAKRYQFKVLPQGWKGSPTVFQHTAAELPQEIRKKYPEVTLIQYMDDLLIGSNHSLPEHRKI
VGVIRATLLRKGIQTPPEKFQDDYPVQWLGYELHPSHWKIAKIELPDQEQWTVNEIQKLIGKLNWAAQIYSGIKTKNLCKSIRGARSLTDTVVLSDLAQA
ELAENREILKEESTGGYYDPNEPLKVELTSLAENQWGYRFFQEKS--VLKTGKFAKIRSTHSNTYQQLADALAKLGKEAIVTWGRLPIFRLPVVKEQWDA
WWADNWQ-INWVPDIEAVYSPHLLRQWYTLV-QDPIEGAPTYYVDGAARTSKEGKAGYVTNFGARKAVTLETTNQKAELEAVLLALRDGPPQMNIITDSQ
YVLGILASCPESESPIVEAIIQELLKKDQVFLSWVPAHKGIGGNEEVDRLVGQGIR--
>tr|Q7ZJ29|Q7ZJ29_SIV Pol protein OS=Simian immunodeficiency virus - mon GN=pol PE=3 SV=1
-------LTVTLKPGKDGPKLKQWPLSKEKIEALTTIXREMIELGQLEEAEPTNPYNSPCFAIRKKKTKWRMLIDFRELNKATQDFFEVQLGIPHPAGLQ
NMANITIVDMKDAFYSIPLDENFRKYTAFSIPSVNNAEPAVRYQFRVLPQGWKGSPTIFQYSASELLKXIRRKYPEVTLIQYMDDLLIGSDHSLPEHRKI
VTAIRTLLSEKGIQTPIEKYQDKYPLQWLGYELHPTHWTVQKIELPEQDQWTVNGIQKLVGKLNWAAQIYPGIKTKHLCXCIRGXKALTDIVELSDLAQA
ELAENREILSQQSTGGYYDPQLDLKVEITSLXEGQWGYXYFQEDR--VLKTGKFAKIKNAHSNTYQQLADAVTKLGKEALVIWGKLPIFRLPVNKEQWDT
WWADNWQ-VTWIPEIEPVHSPHLLRQWYTLV-QDPIEHAPTYYVDGAARASKEGKAGYVTSTGQRKVIPLETTNQKAELEAVLLALQNGPASMNIVTDSQ
YVMGILASKPESESPIVEKIIQQLLGKKQVYLSWVPAHKGIGGNEEVDKLVSQGIR--
>tr|A4UDG3|A4UDG3_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
-------IKVALKEGAKGPMVKQWPLTQEKIKALEGIVQQMLKLDQIEEIGPDNPYNSPCFAIRKKKSKWRMLIDFRQLNEATQEFTEVQLGIPHPAGLA
EHEHVTIVDIKDAFYSVPLDPAFRKYTAFSLPQVNNQGPARRYQFKVLPQGWKGSPTIFQYTAAKLLQEIREANPDITLIQYMDDLLIGSNREISGHRRV
VAQIRNMLLKLGIQTPEDKYQKDYPVQWLGYELHPRGWKIQPVTLPQQENWTVNDIQKLVGKLNWAAQAYPGVKTKQLCKCIRGVKSLTEEVQLTEEAQL
ELAENQEILKQAVQGAYFDPEQPLVAEIVSLGDSQWGYNFLQNKG--ILKSGKFAKVRSVHTNSYQQLSDAIARIGRESLVIWGKPPKVRIPVIKEQWDQ
WWTEHWQ-VSWIPDIEAVHTTHLLRQWFTLV-PEPLSEAPTYYVDGAAKVSKLGKAGYVTNTGKEKVVSLETTNQKAELEAVLLALKEGPPSMNIVTDSQ
YVLGIVASQPQSTSPLVEEIIQQLLTKEAVYLSWVPAHKGIGGNEDVDKLVSHGIR--
>tr|Q6VG49|Q6VG49_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
-------IKVTLKEGAKGPMVKQWPLTQEKIRALEDITQQMLKVGQIEEIGPENPYNSPCFAIRKKKSKWRMLIDFRQLNEATQELAEVQLGIPHPAGLI
EHEHVTIVDIKDAFYSVPLDPDFRKYTAFSLPQVNNLGPARRYQFKVLPQGWKGSPTIFQFTAAKLLEEIKKANPDVTLIQYMDDLLIGSNRELSSHRKV
VAQIRNMLLKLGIQTPQEKFQEDYPVQWLGYELHPRGWKIQPVALPQQEVWTVNDVQKLVGKLNWAAQAYPGIKTKQLCKCIRGVKSLTEEVQLTEEAQA
ELAENQEILQQTVQGAYYDPEQPLVAEIVSLGDSQWGYNFTQSKG--VLRTGKFAKVRSVHTNSYQQLADAMAKIGRESLVIWGKPPKVRIPVIKEQWDQ
WWIAHWQ-VSWIPTIEAVHTTHLLKQWFTLV-PEPLKEAPTYYVDGAARVSKLGKAGYVTNTGKEKVISLETTNQKAELEAVLLALKEGPPRMNLVTDSQ
YVLGIVASQPQSTSPLVEQIIQELLSKEAIYLSWVPAHKGIGGNEEVDKLVNSGIR--
>tr|A0A075E6Z5|A0A075E6Z5_SIV Pol (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
-------IPVKLKEGKDGPKVKQWPLTAEKIKALEQITQEMVKLGQLEEIGPENPYNSPCFAIRKKKTKWRMLIDFRKLNENTQDLFEVQLGIPHPSGLA
EHEHVTVLDMKDAYYSIPLDEDFRKYTAFSIPSINNEQPAKRYQFKVLPQGWKASPTIFQNTAASLLKQIRDKYKDVTIIQYMDDMLVGSDREKGEHRKI
VEEIRQLLVKYGIQTPEEKYQREYPVNWLGYELHPKGWKIQPIQLPEQDVWTVNDIQKLVGKLNWASQIYPGIRTKQLCACIRGVKALTDIVQLTEAAEA
ELAENREIIKQEVQGRYYDPGKELTVEITSLGEQQWGYTFSQENK--HLKTGKFAKVRTTHSNSYQQLADAVTRLGKEALVYWGKIPVFRIPVIKEQWDN
WWAEYWQ-VTWVPNVEAIHTPHLLRQYYTLV-QEPIEGAPTYYTDGAARNSKLGKAGYVTNTGQRKVVELQTTNQKAELEAVLLALKDSPSKLNLVTDSQ
YVLGIILSEPESDSPLVEQIIQQMLQKQAIYVSWVPAHRGIGGNMEVDRLVSQGVR--
>tr|A9LHN9|A9LHN9_SHEEP Pro-Pol OS=Ovis aries GN=pro-pol PE=4 SV=1
-------LPLDLKSSEEPVWVDQWPLTQEKLSAPQQLVQEQLRLGHIEPS--TSAWNSPIFVIKKKSGKWRLLQDLRKVNETMMHMGALQPGLPTPSAIP
DKSYIIIIDLKDCFYTIPLAPQDYKRFAFSLPSVNFKEPMQRYQWRVLPQGMTNSPMLCQKFVATALAPVRQRFPQLYLVHYMDDILLAHADEHL-LYQA
FSILKKQLSLNGLVIADEKIQTHFPYNYLGFSLYPHVYNTQLVKLQTDHLKTLNDFQKLLGDINWIRPYLPTYTLQPLFDVLKGDSDPASPRTLSLEGQS
VLQSIEEAIRQQQI-TYCDY------------QRSWGLYILPTPK--PLRWIYLSATPTKHLLPYELVAKTVAKGRHEAIQYFGMEPFICVPYALEQWLF
QFSDNWS-IAFANYPG-IHSSHAFIFPKIVR-RQPIPEATLIFTDGSSGTA-----ALII-NHQTYYAHTNSSAQVVELFAVHQAL-TVSTSFNLFTDSS
YVVSALQMLETPTSPEVFTLIQQVLHRHPCFFGHIRAHSTLPGALVQGHTADVLTK--
>tr|D6QZI1|D6QZI1_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPINTVPVKLKPGMDGPRVKQWPLTEEKIKALTEICAELEKDGKISKIGPENPYNTPIFAIKKKSTRWRKVVDFRELNKRTQDFWEVQLGIPHPAGIK
KNKSVTVLDVGDAYFSIPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQYSMTKILEPFRTKNPNIVIYQYVDDLYVGSDLEIGQHRTK
IKELREYLWKWGFYTPEEKHQKEPPFHWMGYELHPDKWTVHPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVSLTVEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQE-PFKILKTGKYAKMRSAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPILKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWY-QLETEPIAGAETFYVDGASSREKKGKAGYVTDRGRQKAITLTTTNQKAELQAIQLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEQLIKKDKIYLSWVPAHKGIGGNEQVDKLVSAGIR--
>tr|I3WE70|I3WE70_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPXVKQWPLTEEKIKALTDICAELEKEGKISKIGPENPYNTPVFVIKRKNTKWRKLIDFRELNKRTQDFCEVQLGIPHPAGLQ
KKKSVTVLDVGDAYYSIPLDEDFRKYTAFTIPSINNQTPGIRYQYNVLPMGWKGSPSIFQASMIKILEPFKARNPEIGIYQYMDDLYVESDLEIEQHRAK
IEEFREHLLKWGLYTPDEKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDXVTLTEEAEL
ELAENREILKEPVHGVYYDPTKELVAEIQXQGQGQWTYQIYQE-PFKNLKTGKYAKKRSAHTNDVKQLTEVVQKVATESIVIWGKTPKFRLPIQXETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWY-QLEKDPIVGAETFYVDGAANREKLGKAGYVTDRGRQKVVSLPTTNQKTELHAIYLALQDSGSEVNIVTDSQ
YALGIIQAQPXSESEXVNQIIEKLIEKDXVYLSWVPAHKGIGGNEQVDKLVSNGIR--
>tr|A0A0B4LBE4|A0A0B4LBE4_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLTKEKIEALVEICTELEKDGKISKIGPENPYNTPIFAIRKKSTKWRKIVDFRELNKRTQDFWEVQLGIPHPAGLK
KNKSVTVLDVGDAYFSIPLDENFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYVDDLYVGSDLETQQHRAK
VEELREHLWRWGFYTPDKKHQKDPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTEVVTLTKEAEL
ELAENREILKEPVHGVYYDPSKDLVAEIQKQGQGQWTYQIYQE-PFKNLKTGKYAKMRSAHTNDVKQLTEVVQKIATESIVIWGKTPKFRLPIQKETWEA
WWTDYWQ-ATWIPEWEFINTPPLVKLWY-QLEKEPIAGAETFYVDGAANREKLGKAGYVTNRGRQKAISLTTTNQKTELQAIHLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESEIVSEIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRK-
>tr|Q9QEG0|Q9QEG0_9HIV1 Gag-Pol polyprotein OS=Human immunodeficiency virus 1 GN=gag-pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICMEMEKEGKISKIGPENPYNTPIFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPYRIKNPEIVIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKELCKLLRGAKALTDIVTLTEEAEL
ELAENREILKEPVHGVYYDPTKDLIAEIQKQGQDQWTFQIYQE-PFKNLKTGKYQERVAPYDLSITELTEVVQKVTTESIIIWGKTPKFRLPIQRETWEA
WWMEYWQ-ATWIPEWEFVNTLPLVKLWY-QLEKDPIVGAETFYVDGAANREKLGKAGYVTDRGRQKVVSLTTTNQKTELHAIHLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEKLIGKDKVYLSWVPAHKGIGGNEQVDNLVSSGFR--
>tr|C5HAU1|C5HAU1_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTKEKIKALTEICMEMEKEGKISKIGPENPYNTPIFAIKKKSTRWRKLVDFRELNKSSQVFWEVQLGIAHPAGSE
KNISVTLLDVGDAYFSVSLDPESRKYIAFTIPSSNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRSKNPELVIYQYVDDLYVGSDLEIGQHRAK
IEEVREHLLRWGFFTPDEKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTTEAEL
ELAENREILKEPVHGAYYDPSKDLIAEIQKQGQGQWTYQIYQEL-HKNLKTGKYARTRSAHTNDVRQLTEAVQKIAMECIVIWGKTPKFRLPIQKETWDT
WWTEYWQ-ATWIPEWEFVNTPPLVKLWY-QLETDPIAGAETFYVDGAANREKQGKAGYVTDRGRQKIVSLSTTNQKTELQAIHLALQDSGSEVNIVTDSQ
YAIGIIQAQPDSESDLVNLIIEQLIQKDKVYLSWVPAHKGIGGNEQVDKLVSNGIRK-
>tr|I6LBU1|I6LBU1_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=4 SV=1
-------------------------------------------------------------------TQWRMLIDFRALNQATQDFAEVQQGIPHPSGLP
QMKQITVLDMKDAYYSIPLDPEFSKYTAFTIPSLNNDRPGRRYQFKVLPQGWKGSPTIFQNTADHLLKKFREKYPQVALFQYMDDLLLGSNESLEAHRRI
VGELRGLLNKVGIQTPEAKFQEKPPIKWLGYELYPDKWKVQAIELPDKEQWTVNDLQKLVGKLNWASQLYSGIKTKALCKCLRGVKGLLDEVTLSEEAEA
ELAENRQILQQEVHGSYYDKEKPLEAELTKLAEGQWGYMIKQ-G-HKVLKTGKFARQRTAHSNPYQQLTGAMQKIGRESLVYWGQLPTFRIPVVKEEWEA
WWSSHWQ-CSWVPTIEPIHTPPLVRLWYSLV-QEPIEGAETYYVDGAARDSKEGKAGYVTDSGKEKVIGLSTTNQKAELQAMLLALKESGPKVNIVTDSQ
YVYGILIGNPTTTNQIVEEIIQQLLSKEAVYLAWLPAHKGIGGNEQVDKLVSQGIRR-
>tr|C4P7P6|C4P7P6_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGIDSPKVKQWPLTEEKIKALTEICKEIEKERKISKIRPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLRIPHPAKLK
KKKSVTVLDVEDAYFSVPLDKEFRKYTAFTIPSVNNKTPGIKYQYNVLPQGWKGSPAIFQCSMTKILEPFRTKNQDIVIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLKWGFTTPDKKHQKEPPFLWMRYELHPDKWTVQPIQLPNKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIVPLTAEAKL
ELAENKEILKEPVHGVYYDPSKDLIAEVQKQGKEQWTYQIYQE-PFKNLKTGKYAKMRSAHTNDVKQLTEAVQKISQECIVIWGKTPRFKLPIQKETWEA
WWMEYWQ-ATWIPEWEFVNTPPLVKLWY-QLETEPIAGAETFYVDGASSREKKGKAGYVTDRGRQRAVSLTTTNQKAELHAIQLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESEIVNQIIEQLIQKEKVYLSWVPAHKRIGGNEQVDKLVSARIR--
>tr|K4MJ64|K4MJ64_SIV Truncated pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--AKVQPVKVTLKPGKDGPKQRQWPLSKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLQ
QRRRITVLDVGDAYFSIPLDPDFRQYTAFTLPSVNSAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANSDVTLVQYMDDILIASDRSDLEHDKV
VTQLKELLNDLGFSTPEEKFQKDPPFQWMGYELYPKKWKLQKITLPEKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCKLIRGKVTLTEEVQWTELAEA
ELAENKIILSQEQEGSYYQEGEPLEATAIKNQENQWSYKIHQGE--KILKVGKYAKIKNTHTNGVRLLAQVIQKIGKEAIVIWGKVPKFHLPVERELWEQ
WWTDYWQ-VTWVPDWDFVSTPPLIRMAFNLV-KDPIPGEETYYVDGSCKQSKAGKAGYVTDRGKDKVKVLETTNQQAELEAFAMALADSGPKANIVTDSQ
YVLGIVLGQPTSESPIVNEIINHMMLKEELYVAWVPAHKGLGGNQEVDHLVSQGIR--
>tr|M3WTA7|M3WTA7_FELCA Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
--PLETPHAMPLQWMTSTVWVDQWPLPTIKREAAAHLIEEQLQLSHFVP--STSPWNTPIFVIRKKSNKWRLLQDLRAIHAVMKPMGALQPGLPSPSAIP
LQYQLLVLDLKDCFFTIPLAPGDGEHFAFSLPSTNLQEPAKWYQWKVLPQGMANSPTLCQEFVARAIAPFRQSFPHVYCIHYMDDLLLAAETE-ELLQEA
F------ISPYNLTVAPEKIQREAPFEYLGYLISKSTVRPQKVSIRTEHLTTLMGHHRTI--------------MP-LFNILKGDSSPASPRSLTQETKE
AIRHIE-QAIQQAQVTRIDPSQPLYLIIQSHGPLEWLHLALHS---------------LHVINPLLSMVCLIIRGRSRAVQLFGQDPFITCAFLTQKLAF
AQSIEWQ-LALATGQIKFHLPIDILPYNPIV-CQPIEDAAYIFVDASKEG---KVAVYYVTSQHKNLITLNKSVQRAELYAVQVALKTYPESINVYSDSQ
YVVKAVLQLPTFILTAFHAIQKLNLRHNPIYISHIRAHTDLPGPLVAGNRIADV----
>tr|W5Q662|W5Q662_SHEEP Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1
--TAQIPRALPLKWLTNTKWVEQWPLPQMKLEALEQLVQKQFQLGHIEP--STSPWNSPVFVIKKKSGKWRMLTDLREVNKCIEPMGALQLGLPSPALIP
QNWSLMVLELRDCFFAIPLKLQDRDKFAFTVPVLNHAQPVKRYQWAVLPQGMTNSPTLCQEFIARSLQSLRQEYPNYILYHCMDDLLLAAPSI-AERDEF
FLKVHEASRLYTLQIAPEKIQKD----FFGMVLEQHRIRPRKLQIRRDHLKTLSDFPKLLGDINW----LRLLR-N-LFSTLEGDTALDSPRTLIPLALQ
EL---Q---F----VEHLHASQPISFIIQDKGLIEWVFLPNSF---------------SKKLTTYMDKLALIQKSHHRILQLSGYEPQIVTQLTTAQ---
-FNENWQ-ISLAPGSFSNHYPNAMISHSPIS-DVPVKGPT-IFIDANKN-----TAGYWTPE-SSKV--LPSSVQPAELWSIYLVLQDFPQPINIVSDSP
YAVLSCLQLPHSLPLTFYQVQQLLQRSELIFFTHICAHSALPGPLSFGNATIDA----
>tr|W5NTR5|W5NTR5_SHEEP Uncharacterized protein OS=Ovis aries PE=4 SV=1
--TAQIPQALPLKWLTNTKWVEQWPLPQMKLEALEQVVQEQLQLGHIEP--STSPN--SVFVIKKKSRKWRMLTDLQEVNKCIEPMGALQLGLPSPALIP
QNWSLMVLDLKDCFLTIPLQLQDRDKFAFTVPVLNHAQPVKRYQWTVLPQGMINSPTLCQEFVAHSLQSLCQEYPNYILYHYMDYLLLAAPSI-AECDEF
FLKVHEALRLYNLQIAQEKILKAFPISYLGTILEQHRIRPQKLQIRRDHLKTLNDFQKLLGDINWLR-PVLGIATY-QFSTLEEDTALDSPRTLTPLALQ
EL---E---QQLNDETTKHASQPISFIIQEKGLTEWVFLPNSF---------------SKKLTIYI------WKGCHRILQLSGCEPQIVTQLTTAQ---
-FNENWQ-ISLAPGSFSNHYPNAMISYSPIS-DVPVKGPT-IFTDENKN-----TAGYWTPE-SSRV--LPSSVQPAELWAIYLVLQDFPQPINIVSDSR
YAVLSCLQLPHSLPLTFYQVQQLLQRSELIFFTHIRAHSALPGPLSFKNATIDA----
>tr|A4UDF4|A4UDF4_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--QQLKPTKVSLKERKKGPMVKQWPLSKEKIEALKEITQKMIKLGQLEEAGPNNPYNSPVFAIRKKKTKWRMLIDFRKLNEVTQEFAEVQTGIPHPSGLA
QKAHVTIVDMQDAFYSVPLDKEFRPYTAFSVPAVNNMGPAKRFQFKVLPQGWKGSPTIFQATTAKLLEQVRKDNQDALIVQYMDDLLIGSDREIGEHRRL
VKKIRDLLSSKGIQTPEDKHQPDYPVEWLGYELHPKGWRIKPVELPDQDTWTVNEIQKLVGKLNWAAQVYSGIKTKHLCRCIRGIKGLTELVELSEQAQL
ELAENREILKQEAGGAYYDPEKPLVLEIVSLGEQQWGYTFTQDRNMLRTG--KFAKIRTAHSNPYQQLAEALSRASKEALVCWGKTPKCRIPVVKEQWDN
WWADSWQ-TTWIPDIEAVHTPYLLRQWFTLV-PEPIETAPTYYVDGAANRNSLGRAGYVTDRGQERAINLETTNQQAELQAILLALMDGPPEMNLVTDSQ
YALGIITAAPESESPLVEQIIQQMLSKNAIFISRVPAHKGIGGNEEVDHLVSRG----
>tr|A4UDH2|A4UDH2_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
--GQLEPTKVGLKAGKEGPMVKQWPLSKEKIEALEEITQRMLKLGQLEETGPQNPYNSPAFAIRKKKSKWRMLIDFRKLNEATQDFSEVQTGIPHPSGLS
KKAHVTIVDMQDAFYSIPLYEEFRPYTAFSVPSVNNLGPAKRYQFKVLPQGWKGSPTIFQATTAKLLEQIRKENQDALIVQYMDDLLIGSDREIGEHRRL
VKRVRDLLTSKGIQTPEEKHQQDYPVEWLGYELHPGGWRIRPVELPDQETWTVNEIQKLVGKLNWAAQIYSGIKTKHLCKCIRGVKALTETVELTEQAQL
ELAENREIMKQEVKGAYYDPEKPLILEIVSLGEQQWGYTFTQEKNMLKTG--KFAKVRTAHINTYQQLAEALAKAARESLVCWGKTPKCRIPVVKEQWDH
WWAESWQ-TTWVPEIEAVHTPHLLRQWFTLV-PEPLEAAPTYYVDGAANRNSLGRAGYVTDRGQEKAIDLETTNQKAELQAILMALTDGPPKMNIVTDSQ
YALGIITAAPESESPLVEKIIQQLLTKEAIYLSWVPAHKGIGGNQEVDHLVSKG----
>tr|A0A075E7K0|A0A075E7K0_SIV Pol (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--TSLEPLKVRLKEGKEGPKVKQWPLTAEKIDALINITQEMLKLGQLEEAGPDNPYNSPCFAIKKKKSKWRMLIDFRKLNESTQDFSEVQLGIPHPAGLS
RKRHVTIVDMKDAYYSVPLDPDFRKYTAFSIPAVNNQMPARRYQFKVLPQGWKGSPTIFQHTVSNLLKDIREKYKDIILIQYMDDLLIASDRDLGDHRKV
VEAIRNMLLKYNIQTPEHKHQQDYPVNWLGYELHPQGWKIQPVSLPEQAEWTVNEIQKLVGKLNWAAQVYPGIRTKHLCHCIRGAKALTDRVVLSELAEL
EMAENREIMKQEVQGDYYDPEKDLVVEITSLGGGQWGYMFSQNSKPLKTG--KFAKVRSVHTNPYQQLTDAMTKLGREAIVYWGKVPKFRIPVIKEQWEK
WWADHWQ-VTWIPDVEAVHSPHLLRQYYTLV-QEPIEKAPTYYVDGAANRTSAGRAGYVTNTGRQKAIDLETTNQQAELQAILLALKDGPPKMNLVTDSQ
YALGIVTACPESESPLVEQIIQQLLTKEEIYITWVPAHKGIGGNTEVDRLVSQG----
>tr|Q8JAH1|Q8JAH1_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
--QKIEPIEVHLKAGKEGPKIKQWPLSREKIEALTQITQEMLRLGQLEKIGPENPYNSPVFAIKKKKSQWRMLIDFRKLNEATQDLAEVQLGIPHPAGLE
QKEHVTIIDMKDAYYSIPLYEDFRKYTAFSVPSVNNQAPAERYQFKVLPQGWKASPTIFQNIVASLLRQIRDQEPDVVLIQYMDDLLIGSDRKLGEHRQV
VHKIRNLLTSYNIQTPEAKHQPDYPVKWLGYELHPKGWRLQPVELPDQDTWTVNDIQKLVGKLNWVSQIHPGIRTKQLCKCIRGAKGLTDQVELTEEAQI
ELAENREILKQSSEGGYYDAEKPLVVEITSLGEQQWGYMFSQEGKMLKSA--KFAKTRNAHINSYQQFADALTKVGRESQVTWGKVPKFRIPVVKEQWDA
WWMNYWQ-ATWIPTIEAIHTPHLLRQWYTLV-SEPLEDAVTYYVDGAANRTSLGKAGYVTNTGKHRAIELETTNQQAELHAVLLALKEGPPKMNLVTDSQ
YVMGILQSQPESTSALVEQIIQELLKKEAIYLSWVPAHKGIGGNTEVDKLVSKG----
>tr|V9H0F6|V9H0F6_HUMAN Polymerase (Fragment) OS=Homo sapiens PE=2 SV=1
---PPKPIPLTWKTE-KPVWVNQWPLPKQKLEALHLLANEQLEKGHIE--PSFSPWNSPVFVIQKKSGKWRMLTDLRAVNALIQPMGPLQPGLPSPAMIP
KDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETK-DKLIDC
YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPTL-GIPTSNLFSILRGDSDLNSKRILTPEATK
EIKLVEEKIQSAQ-INRIGPLAPLQLLIFATAHS-PTGIIIQNT-DLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLRITKLCGNDPDIVVPLTKERQAF
INSGAWQIDNHYPKTKIFQFLKLTTWLPKITRCEPLENALTVFTDGSSNGKA-----AYTGPK-ERIKTPYQSAQRAELVAVITVLQDFDQPINIISDSA
YVVQATRDVETLIKYSMDDQLNQLKRNFPFYITHIRAHTNLPGPEQADLLVSSALI--
>tr|U3KN62|U3KN62_RABIT Uncharacterized protein OS=Oryctolagus cuniculus PE=4 SV=1
----MQPLPLSWLDN-KPKWIPQWPLTQEKLAAVNDIVSQQLEAGHLQ--PSTSPWNTPIFVIKKKSGKYRLLHDLRAVNQQMQPMGALQPGLPVPTMIP
KHWPLIVLDLKDCFFSIPLHEQDTQRFAFTVPSINHQGPDKRYEWKVLPQGMTNSPAICQLYVDQAVEPVRQQCPKVQILHYMDDLLITAESE-SHLMEA
YKLLLLYLEKVGLQVAPEKIQKGEVVQYLGLKVTSEKVTPLEFEIAIDGLQTLNDFQKLCGNLNWLRPYC-KLTTMPLFNILEGDAQLDSPRRLTIEARL
ALQKIEKQIKAMQ-MERCDPQQALEILIFMEQLY-PFAVIWQG--GPLLFVYPHSHAPRVLYTQGIAVADLILTAIKKATEMAGKTPKCVVPFAQEEAFT
RECWQWAYDNHYPRHPFVNFCTQVSIRVQKVRRDPIQGAVTVFTDGAKGGTGA---AIFNNQ---RVLTASPSPQHAELAIIATVLRRESAPMNILSDSA
YVVNAVQMLATCLILK-SSSVYSYQREHAIYIG-------------------------
>tr|R4GIK3|R4GIK3_CHICK Uncharacterized protein (Fragment) OS=Gallus gallus PE=4 SV=1
---REQPIPLDWKTE-QPIWVHQWPLTKEKLLHLHELFQEHLAAGHIV--PY-HPWNTPVFVILKTSGKWRLLQDLCAVNAVIEPMEALQPGLPSPSMLP
SNITFSVTDLKDCFVLP----FDFDSLSQCPPSTNKAL---LSSITVLPQGMLNSPTICQLTVANVLQPVRKARPHVLIYHYMDDILTATSEQEEGLKDT
LLLVREAVQYVSLQTAEEKVQLSSPWKYLGWKITSHTTQQQILKIV-PHVQTLNDLQKLLGTINWLRPLL-GIITHPLFRLLKGYPDLTSKRQLTSETLQ
CLDSEITSLQHRF-SHRVCLSLPVSLTIISNSYQ-PYILLCQWDTIIPIWIFLPHTFSKTITS------LLIQRGRHRLQIVPALDPDIYIPATKKDWML
AQSLALQTSTHPPKHQLLHNLSDLSLTNSLLSHVPIPNAVTVLTDGSGKTHRAV--VLWHA-----VHVVDGSPQIVELAAI------FSQKLNIITDSL
YVTGIIPQIEGFLKEVKNPALFAQHCTLPYFPMHIRSHTTLPGP--------------
>tr|I3LTS7|I3LTS7_PIG Uncharacterized protein (Fragment) OS=Sus scrofa PE=4 SV=1
---SPEPIRLKWTTE-KPVWVEQWPLSSEKLKVLSDLVQEQLEKGHIE--ESFSPWNSPVFVLQKKSGKWRLLTDLRGVNAVIQPMGALQPGLPSPSMIP
ANWLLIILDLKDCFFTIPLHPEDKEKFAFSVPVVNNIAPRKHYQWKVLPQGMLNSPTLCQYYVASVVDPVRRQFPKCYVVHYMDDILCAAPSR-EQLTEV
FQCLQTCLKGAGLVIAPEKIQMKSPYQYLGTVVERTTVHPQKVELRRDQISTLNDLQKLLGDINWLRPYL-GIPTSNLFSLLRGDSKLNSPRSLTAEAEE
ELKKIESKIQNSQ-LSRVNLKQPIQLVIIPSPHS-PTGILMQLE-NILEWLFLPNNVTKSLSPYLDLMAQLILKGRTRCVQMSGKDLNVIVSLTIKQNCF
QNHIGWQIDNHYPEIPVLQFIKRTQWLPKKVKESPIIDAPVIFTDGTSKGKA-----RYVANQ-SKIRTPGLSAQQAELTAVIHALRDYPEPINILSDSA
YVVHAAKMIEATIKQNLPVLLFDLERRYPFYIAHIRAHTNLPGP--------------
>tr|A2I517|A2I517_9DELA Gag-pro-pol polyprotein (Fragment) OS=Human T-lymphotropic virus 1 PE=4 SV=1
---APAVLGLEHLP--RPPEISQFPLNPERLQALQHLVRKALEAGHIE--PYTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPDLSSLP
TTLAHQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPSH-EDLLLL
SEATMASLISHGLPVSENKTQQTGTIKFLGQIISPNHLTYDAPTVPIRSRWALPELQALLGEIQWVSKGT-PTLRHSLYCALQRHTDPRDQIYLNPSQVQ
SLVQLRQALSQNC-RSRLVQTLPLLGAIMLTLTG-TTTVVFQSKQWPLVWLHAPLPHTSQ-CPWGQLLASAVLLLDKYTLQSYGLLCQIHHNISTQNQFI
QTSDHPSVWNTFLKTAA-PLAPVKALPVFTLSPVIINTAPCLFSDGSTSRAAY---ILWDKQILSQLPPPHKSAQRAELLGLLHGLSSARRCLNIFLDSK
YLYHYLRTLALTFQGRSSQAPFQALSRKVVYLHHVRSHTNLPDPALTDALLITPVL--
>tr|Q52SM6|Q52SM6_9HIV2 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=4 SV=1
----------------------QWPLSKEKIQALKEICEKMEKEGQLEEAPPTNPYNSPTFAIKKRKNKWRMLIDFRELNKVTQEFTEVQLGIPHPAGLA
SKKRITVLDVGDAYFSIPLDPDFRPYTAFTLPSVNNAEPGKRYLYKVLPQGWKGSPAIFQYSMGKVLDPFRKANSDVTIIQYMDDILVASDRSDLEHDKV
VSQLKELLNNMGFSTPEEKFQKDPPFKWMGYELWPKKWKLQKIQLPEKEVWTVNDIQKLVGVLNWAAQLFPGIKTRHICRLIRGKMTLTEEVQWTELAEA
ELEENKIILEQEQEGSYYKEGVPLEATVQKNLA--------------NQWTYKIHQGDNTHTNGVRLLAHVVQKIGKEALVIWGEVPIFHLPVERETWDQ
WWTDYWQV-TWIPEWDFVSTPPL--ILAYNLVKDPLEGVETYYTDGSCNRTSKEGAGYVTDRGKDKKPLEQTTNQQAELEAFALALQDSGPQVNIIVDSQ
YVMGIIAAQPTTESPIVKTIIEEMIKKEAIYVGWVPAHKGLGGNQEVD----------
>tr|A0A097PHY4|A0A097PHY4_9HIV2 Pol protein (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=4 SV=1
---KVEPIKIALKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEETPPTNPYNSPTFVIKKKKNKWRMLIDFRELNKATQDFTEIQLGIPHPAGLA
KKRRITVLDVGDAYFSIPLHEDFRQYTAFTLPSINNAEPGKRYVYKVLPQGWKGSPAIFQHTMRQVLEPFRKANQDVIIIQYMDDILIASDRTDLEHDRV
VLQLKELLNGLGFSTPEEKFQKDPPYHWMGYELWPTKWKLQKIQLPQKEKWTVNDIQKLVGVLNWAAQLFPGIKTKHLCRLIRGKMTLTEEVQWTELAEA
ELEENKIILSQEQEGHYYQEEKELEATVQKDQD--------------NQWTYKIHQGENTHTNGVRLLAQVVQKIGKEALVIWGRVPKFHLAVERETWEQ
WWDNYWQI-TWIPDWDFVSTPPL--VLVYNLVKDPIPGTETYYTDGSCNRQSKEGAGYITDRGNNKRILEQTTNQQAELEAFAMAITDSGPKVNIIVDSQ
YVMGIVAGQPTSESRVVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGLF--
>tr|A0A091EQV9|A0A091EQV9_CORBR Uncharacterized protein (Fragment) OS=Corvus brachyrhynchos GN=N302_14045 PE=4 SV=1
---------LTWKTG-KAIWSEQWSLSAEKLRALESLVEEQLGKGHLV--PSNSPWNSPVFVLKKPKDRWRLLQDLRRINEIIEDMGPLQPGLPSPSMLP
QQWKLAVIDIKDCFFSIRLHPRNAPQFAFSVTSLNRQAPLHRYHWQVLAQGMKNSLTICQWYVGHALFPIRKEFPRAILLHYMDDILICAPDD-NYLDLT
LKETLRAIEKAGFEIQTEKIQRTCPWTYLGLCIGEQTIVPQQLTIQ-DDPKTLWDLHQLCGSISWVRPLL-GITTSPLFDLLKGCEDLDSPHAIAAEAQE
AIIKVQLALSFQQ-AHQTLPHLPFSFIVPGNAPR-FHGLIFQLDTIIIKWIFLSHQLPKSITPPQERMAQLIMRARAHLRNLAGCDFAIHLPLTVGEHLL
WTNEHLQYSVHKPKHKLLNT--AFNLPKSLLSQTPL-KALTVFTDGSS-SHKSV--VIWRDPRTQMVQVVEGSPQIAELTAVVRPFERFQEAFNLVKDSA
YVAGVTTRAEHLLKEVANPQLYQLHREQPYHVMHVRSHTDLPG---------------
>tr|A0A091EBQ4|A0A091EBQ4_CORBR Uncharacterized protein (Fragment) OS=Corvus brachyrhynchos GN=N302_06628 PE=4 SV=1
---------LNWKTD-EPVWVNQWSLKKENLEALKTLVAEQLAKGNIV--PTNSPWNTPVFVIQKPKNKYRLLQDLREVNKVIEDMGPLQPGMPSPSMLP
QHWHLAVLDIKDCFFHIPLHPADAPRFAFSVPSLNRETPMERYHWLVLPQGMKNSPTLCQEYIAKILSPIRAKAEKAIILHYMDDVLVCAPNN-QYLEQT
LNMVVEALEAKGFELQPEKMQRTSPWKYLGLKITETSITPTPVTIN-NNPKTLEEVQQICGTLKYLRSWL-GLTTAPIANLVKGEGGPASPRSLTEEARQ
SLKKVQELISTRQ-AHRYQPSLPFKLVILGKVPR-FHGLIFQWDKIIIEWVFLPLQPPKTITQPQELMAKIIMKGRARLRTLAGCDFAIYLPVTTDDHLL
QNNINLQFSNHYPKHDMFNL--PFFFPREIQSRKPL-DAITVFTDASGKSKKSV--VTWKNPKTQKIKVIQGSPQVAELAAVVRAFERFKEPFNLVTDSA
YVAGVTVRAEHLLKEISNKKIYDLHREHPYFVMHVRSHTNLPG---------------
>tr|A0A099ZCJ9|A0A099ZCJ9_TINGU Uncharacterized protein (Fragment) OS=Tinamus guttatus GN=N309_01472 PE=4 SV=1
------------------------LVGERLSESMGHGVDEQLQAGHIV--PTTSPWNTPVFVIQKKNNSWRLLHDLRKINEVIEDMGALQPGLPSPAMLP
QTWTLIVIDLKDCFFTIPLAPQDAPRFAFSVPSINAMEPHSRYHWRVLPQGMKNSPTLCQQFVAAVLSPIRKYFDNVLIYHYMDDILIAAEQK-ETAEEA
LHQITRAASAAGLRIAEDKVQESPPWRYLGWRISDHQIRPQSLTLK-TDIRTLNDLQKLLGTINWIRPSL-GISTHPLFKLLEGDTSLTSSRKLTPPARA
ALGKVVDKLTTQT-VHRRKQNYPVSLFVFYSSFQ-PYGLLAQWIPIILEWVFLPHNFGKTVTTAIDMIAMVIQKGRERLMFLDGTEPNIYLPLDTKTFLT
HQSFVFQCSIHFPGHKIIQSFNSLSLPLCHLSLTPIPDALTVFTDGSGRTGRAV--VVWRNDE-GHIHVVTGSPQIVELSAVVRVFTRWPSAVNIITDSA
YVAGLVSRLEHFLKEVSNETLFALRRIYPYFIQHVRSHTSLPG---------------
>tr|H0ZQ36|H0ZQ36_TAEGU Uncharacterized protein (Fragment) OS=Taeniopygia guttata PE=4 SV=1
--------PLNWKTD-VPVWVDQWPLVEEKLKALNELVEEQVRLGHLI--PSTSPWNTPVFVIKKPKDKWRLLQDLRRVNDVIEDMGPLQPGLPSPSMLP
RDWQLAVIDIKDCFFNIPLYPGDAPRFAFSVPSINRAEPYKRYQWTTLPQGMKNSPVLCQTFVAQVLSPVRRLFPEAIILHYMDDVLVCAETT-TYLRAA
LNKTIKAIKDAGFQIAEEKIQLSAPWKYLGITITGRTVAPQSVTIK-DDPRTLRDLQQICGTITWIRPLL-GLTTAPLFELLRGDGDLASPRELTPAAKG
ALERVAEAIRSRQ-AHRVDRVLPITLAILGKCPN-FHGLLFQT--HIIEWLFLPHQPPKTISTPAELMAKLIIKGRQRLRTLAGCEPAIYVPLNLEESLL
QTNENLQISIHYPKHKLFKD--TFYLPKSYKSKTPIKDALTVFTDGSGKSHKS----------SQKIQIVEGSPQIAELAAVVRAFKKFQQPFNLVTDSA
YVAGIAERAEHMLKEIQNKKLFGLHREQPYHIMHVRAHTDLPGA--------------
>tr|K7FUX2|K7FUX2_PELSI Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
-------LKLTWKTD-KPVWVDQWPLKDERLLQVQKLVKEHLALGHIV--PSTSPWNTPIFTIPQKSGKWRLLQDLRAINAVMEQMGPLQLGVPSPSMIP
EQ----VIDLKDCFTTIPLHPDDFSHFAFSVPTVNNEGLMQRYHWVVLPQGMMISPTICQIVVDSALTEARTCHQQAIIYHYMDDILFATADQ-AALQAL
YDLASRLLRRYGLCIAEEKVQAVPPWRYLGWKLYESEIRPQPLKIA-TSITTLNDLQKLLGTINWIQPTL-GVTTSPLFQLLRGNSDLSSPRALTPKAVA
VLQRVVEKIQTAF-GHRRDAYLPIGLFLIYHTYN-S-------PVLTFEWLFLPHSFSKTVTTATDMLARLISQGRVRCQQLTGVDPSLHIPVTRADFWL
SQSLSLQIEYTLPCHQLLQSLPQLPLPRTMLSHIPLPGARTVFVDGSGNTGKAI--VVWRDGDDAPVFRVQGSTQIVELAVAVRAFELFLEQLNLVVDSA
L----LQRLESFLKEVNNRLLFQLAWTHLYFVVHIRSHTTLPGP--------------
>tr|W5PFI5|W5PFI5_SHEEP Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1
---IPRALPLKWLTD-VPKWVEQWPLSKVKLEALKQLVKEQLQSGHIE--PSTSPWNSPVFVIKKKSGKWRMLTDLRAVNKCIEPMGALQLGLPSPALIP
QDWSLMVLDLKHCFFYIPLQIKDRNKFAFTIPVYNHGQPVKRYQWTVLPQGMINSPTLCQEFVNRALITVRQQFSNCLLYHYIDDLLLAAPSK-EERDTF
FIHVKKALSDFNLQIAPEKIQTEFPISYLGAILERQRIKPQKVQIRRDNLKTLNDFQKLLGDINWLRPML-GIPTRHLFSTLEGDTALNSPRSLTSQAKE
ELHFVEQRLNEGF-LTYLQQDQPIYFIVFHTPYS-PTGVIAQSA-GLIEWVFLPNNYTKKLTTYTDRIAFLILKGRGRIIQLIGSDPQIITQLTSTSNCL
QFNENWQISNQYPQSKMIDFLRHTSMCKSPISNIPV-EGKTIFTDANKNTAG-----YWTDTT-SKVPHSFSSVQPAELWAICLALQDFFIPINIVSDSK
YAVFSCIYLPETLPVTLKTNIDKLKGYKKLFFTHIRAHSSLPGP--------------
>tr|W5Q970|W5Q970_SHEEP Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1
---IPRALPLKLLTN-TPKWVEQWPLPQIKLEALEQLVQEQLQLGHIE--PSTSPWNSPIFVILKKSRKWKMLTDLREVNKCIEPMGALQLGLPSPALIP
QNWSLMVLDLKDCFFTIPLQLQDRDKFAFTIPVLNHAQPVKRYQWTVLPQGMTNSPTLCQEFIARSLQSLRQEYPNYILYHYMDDLLLAAPSI-AERDEF
FLKVQEALRLYNLQIAPEKIQKDFPISYLGTILEQHRIRPQKLQIRRDHLKTLNDFQKLLGDINWLRPVL-GIPT---FSTLEGDTALDSPRTLTPLALQ
ELQFVEQRLNDGF-LTYLHASQPISFITFHTPYS-PSGVIAQEK-GLIGWIFLPNSFSKKLTIYMDKLAFLIQKGRHRILQLSECEPHIVTQLTTASRCL
QFNKNWQISNHYPSSKLIDFLRTNSMSQSPISDIPV-KGPTIFTDAN-NTAG-----YWTPEN-SKLPHSFSSVQPIELWAIYLVLQDFPLPINIVSDSR
YAVLSCLQLPHSLPLTLKTAIDKLQRSKLIFFTHIHAHSALPGP--------------
>tr|M3XBB9|M3XBB9_FELCA Uncharacterized protein OS=Felis catus PE=4 SV=1
-------MPLQWMTS-TPVWVDQWPLPTVKREAAVHLIEEQLQLGHLV--PSTSPWNTPIFVIRKKSNKWRLLQDLRAINAVMKPMGALQPGLPSPSAIP
LQYQLLVLDIKDCFFTIPLAPGDGEHFAFSLPSTNLQEPAKRYQWKVLPQGMANSLTLCQEFVARAITPFRQSFPHVYCIHYMDDLLLAAETE-ELLQEA
FISLQRCLKAYNLIVAPEKVQREAPFEYLGYLISKSTVRPQKVSIRTGHLTTLNDFQKLLGDINWIRNTL-GVTTLPLFNILKGDSSPASPRSLTQEAKE
AMRHIEQAIQQAQ-VTRVDPSQPLYLIILKPQVI-PFAILWQSH-GPLEWLHLALHSLHVINPLLSMVCLLVIRGRFRAVQLFGHDPEIACAFTQKDAAF
AQSIKWQLKFHLPSDSLIQGFNLIDIPYNPVVCQPIEDAASIFVDASKEGKIA---VYYVTSQ-HKLNYTTKSVQRAELYAVQVALKTYPESINVYSDSQ
YVVKAVLQLPTFILTA-DEELYRLSWHSPIYISHIRAHTDLPGPRIADAATHLLQV--
>tr|W5P8N1|W5P8N1_SHEEP Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1
--------PIQWKPR-PPIWVEQWPLPSTKLQALREIISEQLNLGHIC--PSTSPWNTPIFVI-----KWRMLQDLRKINERMIIQGTPLRGLPWIPAIP
GNLCLIVIDIKDCFFSMPLQSQDREKFAFSVPSTNFEGPDERFEWTVLPQGMANSPAYCQNYVQDLLQPVSDL-TYIKPCVYMDDVILGAPTA-EQLTEA
YKVLPKCLSKGRLHISSDKVQVVPPFQILGSQLSLEGVSPLKPQLYIQDSYSLTGLGQVLGEINWLPPWV-PVSILPLFDLLKD-RQPNDEITLLPSHEK
IFQDIQRAFNGAQ-LTRYTPEEGLQLWVLPSPSL-LTAALVQGG-KPLQWVHISLGGTPRVYTCIDQTADLIQKGRDIAVRCYAHEPDIVILHRLSEWIQ
RNNGRIALDCHYGPHKWVTSFGRLDWAPQLFLFKPMPDALNAFTDGAQHSQQP---DQ-------HFGPCEGSAQFKELLAVVMVLTKVPEPMNLFSDSL
YVVNLLPGLLNHIRL--DNNPLPLERVNPIYVHHLRGHQNLPGL--------------
>tr|O41290|O41290_MPMV Polymerase (Fragment) OS=Simian endogenous retrovirus GN=pol PE=4 SV=1
---QRCADPITWKSD-EPVWVDQWPLLNDKLSAAQQLLQEQLEAGHII--ESNSPWNTPIFVIKKKSGKWRLLQDLRAVNITMVLMGALQPGLPSPVAIP
QKYFKIIIDLKDCFFTIPLHPADQKRFAFSLPSTNFRQPMKRYQWKVLPQGMANSPTLCQKYVAAAIEPVRKTWTQMYIIHYMDNILIAGKIG-EQVLQC
FAQLKQKLTAAGLQIAPEKAQLQDPYTYLGFQINGPKIINQKAVIRHDHLKTLNDFQKLLGDINWLRPYL-KLTTKPLFDILKGDSNPKSPRSITKKTLI
TLQQVKHAIATQF-VTSIDYSQPLIFIIFSTTIT-PTGLFWQN--NPIMWVHLPSSPKKVLLPYYDAIADLIILGRENSRKYFGIEPSIIQPYTQSHWLL
QNTEAWPIDNHYPPNKLIQFCKLHAFFPHITSKEPLNDALLIFTDGSSTGLAA-----YTYN---DFQTTYTSAQLVKLQAIIAALSAFPQPLNIYTDSA
YLAHSIPLLETPQIKH-ISDTANLKRTTPFFLGHIRAHSRITGT--------------
>tr|A0A0D3R173|A0A0D3R173_9BETR Truncated pol (Fragment) OS=Desmodus rotundus endogenous retrovirus GN=pol PE=4 SV=1
-----------------------------------------------------------------------------------------------PVAIP
ANYYKIVIDLKDCFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAAAIAPVRKQWPQAYILHYMDDILLACPDG-DTARAC
HAHMITCLANRGLQIAPDKVQTSDPYSYLGFELCHQQVLTPRISLRTDNLKTLNDFQKLLGDVQWLRPYL-KLPTLPLNNILKGDSDPLSPRALTPEAEH
SLTIINKAIQRQS-AQQISYNLPLVFILFPTAHT-PTGVFWQTKTHPLLWVHLPASPSRVLLTYPSLLATLIIKGRSTSRQLFGKDPDIITPYSHDNWLL
QTSDEWAIDNHYPSDPLVQFAKTHQFFSKLTKAAPIPKATLVFTDGSSNGTAA-----YIIN---KVKSPYSSAQLVELFAILEVFTSLAQPFNLYTDSA
YIAQSVPLLETPFIKP-STNATPLQRQHPFYIGHLRAHLDLPGPALADVATQTICP--
>tr|A8QXD1|A8QXD1_9HIV1 Polyprotein (Fragment) OS=Human immunodeficiency virus 1 GN=gag-pol PE=4 SV=1
-------------------------------KALTEICAELEEEGKISRIGPENPYNTPIFAIKKKSTKWRKLMDFRELNKRTQDFWEVQLGIPHPAGLE
KKKSVTVLDVGDAYFSVPLDEDFRKYTAFTVPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEMVIYQYMDDLYVGSDLEIGQHRIK
IEELREHLWKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKIKQLCKCIRGAKTLTEVVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ--------------DQWTYQIYQEQGTHTNDVKQLTEAVQKIAQECIVIWGKTPKFRLPLQKETWET
WWTEYWQA-TWIPEWEFVNTPPL--VLWYQLEKEPIAGAETFYVDGAANRETRLGAGYVTDKGRQKVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEQLIKKEKVYLSWIPAHKGIGGNEQVDKLVSNGLF--
>tr|A0A097PHX3|A0A097PHX3_9HIV2 Pol protein (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=4 SV=1
---KIEPIKVTLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIRKKKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLA
KKKRITVLDVGDAYFSIPLWEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQILEPFRKANQDVIIIQYMDDILIASDRTELEHDKV
VLQLKELLNSLGFSTPDEKFQKDPPYQWMGYELWPTKWKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQIYPGIKTKNLCKLIRGKMTLTEEVQWTELAEA
ELEENKIILSQEQEGSYYQEKEELEATVIKNQD--------------NQWAYKIHQGENTHTNGIRLLAQVVQKIGKEALVIWGRVPKFHLPVEREIWEQ
WWDDYWQV-TWIPEWDFISTPPL--VLAFNLVKDPISGEETFYTDGSCNRQSKEGAGYVTDRGRDRKVLEQTTNQQAELEAFAMAVADSGPKANIIVDSQ
YVMGIIAGQPTSESRIVNQIIEDMIKKEAIYIAWVPAHKGIGGNQEVDHLVSQGLF--
>tr|Q701S1|Q701S1_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
-------------------KVKQWALTEEKIKALMEICTELEKDGKISKIGPENPYNTPVFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPGGLK
KKKSITVLDVGDAYFSIPLDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPDIEIYQYIDDLLVGSDLEIEQHRAK
IKDLREYLWKWGFYTPDRKHQQEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGTKALTEVIPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLVAEIQKQGL--------------GQWTYQIYQEPSAHTNDVKQLTEVVQKIATESIVIWGKTPKFRLPIQKETWDS
WWMEYWQA-TWIPEWEFVNTPPL--VLWYQLEKEPIVGAETFYVDGAANRDTKLGAGYVTDRGRQKVPLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEELIKKEKVYLSWVPAHKGIGGNEQVDKLVSAGLF--
>tr|R9RXP8|R9RXP8_9HIV2 Pol protein (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=3 SV=1
--AKIEPIKVTLKPGKEGPKLKQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIRKKDNKWRMLIDFRELNRVTQDFTEIQLGIPHPAGLA
KKKRITVLDVGDAYFSIPLDESFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPDVIIIQYVDDILIASDRTNLEHDKV
VLQLKELLNGLGFSTPDDKFQKDPPFHWMGYELWPTKWKLQKIQLLQKEVWTVNDIQKLVGVLNWAAQIYPGIKTRHLCRLIRGKMTLTEEVEWTELAEA
ELEENRIILSQEQEGHYYQEEKELEATGHKNQDNQWAYKIHQED--KILKVGKYAKVKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERETWEQ
WWDNYWQ-VTWIPEWDFVSTPPLVRLTFNLV-GDPIPGAETFYTDGSCRQSKEGKAGYVTDRGKDKVKVLETTNQQAELEAFAMALADSGPEVNIIVDSQ
YVMGIVASQPTSESRIVNQIIEDMIKKEAVYVAWVPA---------------------
>tr|Q9DIJ4|Q9DIJ4_9HIV1 POL (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTELEQDGKISKIGPENPYNTPVFAIKKKSDKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTVLDIGDAYFSVPLDEEFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPDMDIYQYVDDLYVGSDLEIEQHRKK
IEELRAHLWKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKIKQLCKLIRGTKTLTEIVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWSYQIYQE-PFKNLKTGKYAKMRGTHTNDVKQLAEAVQKIITESIVIWGKMPKFRLPIQRETWDA
WWMEYWQ-ATVIPEWEFVNTPPLVKLWY-QLEKEPII---------------------------------------------------------------
----------------------------------------------------------
>tr|R9RXU3|R9RXU3_9HIV2 Pol protein (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=3 SV=1
--AKVEPIKIMLKPGKDGPRLRQWPLSKEKIEALREICEKMEKEGQLEEAPPTNPYNTPTFAIRKKDNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLA
KRKRITVLDIGDAYFSIPLDEDFRKYTAFTIPSVNNAEPGKRYIYKVLPQGWKGSPTIFQHTMRHVLEPFRKANPDVTIIQYMDDILIASDRTNLEHDQA
VLQLKELLNGLGFSTPDEKFQKDPPYQWMGYELWPTKWKLQRLQLPQKEIWTVNDIQKLVGVLNWAAQIYPGIKTRHLCKLIRGRMTLTEEVQWTELAEA
ELEENKIILSQEQEGCYYQEEKELEATIQKNEHNQWTYKIHQGDN--LLKVGKYAKVKNTHTNGVRLLAQVIQKIGKEALVIWGRIPKFHLPVERDTWEQ
WWDNYWQ-VTWIPDWDFISTPPLVRLVFNLV-KDPIPDAETFYTDGSCRQSKEGKAGYITDRGRDKVKVLETTNQQAELEAFAIAITDSGPKANIIVDSQ
YVMGIAAGQPTSESKIVNQIIEEMIKKEAIYVAWVPA---------------------
>tr|W0M2E0|W0M2E0_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
-----------------------------EXKSNNRNLSVMESGRXXHKGIGGNPYNTPIFAIKKKDSTKWRKXVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLYEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRAKNPEIVIYQYMDDLYVGSDLEIEQHRAK
VEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGTKALTDVVPLTEEAEL
ELAENREILKDPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEP-FKNLKTGKYARKRSAHTNDVRQLTEVVQKVATESIVIWGKIPKFKLPIQKETWEA
WWREYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIEGAETFYVDGAANREKSGKAGYVTDRGRQKVVSLTTTNQKTELHAFHQAWQDPGSEXDQXKETV
XXKAR-NGWPK-----------------------------------------------
>tr|Q6QLU6|Q6QLU6_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 PE=4 SV=1
---------------------KQWPLTEEKIKALTEICTDMEKEGKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSIPLDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSQNPDIVIYQYMDDLYVGSDLEIGQHRTK
VEELRAHLLSWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKENWTVNDIQKLVGKLNWASQIFPGIKIKQLCKLLRGAKALTDIVTMTQEAEL
ELAENREILKDPVHGVYYDPSKDLVAEIQKQGQDQWTYQIYQEP-FKNLKTGKYAKRRSAHTNDVKQLVEVVQKVSTESIVIWGKIPKFRLPIQKETWEL
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPILGAETFYVDGAANREKSGKAGYVTDKGRQKVITLTTTNQKTELHAIYLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESEIVNQIIEKLIEKERVYLSG------------------------
>tr|D0U7P1|D0U7P1_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
-----------------------WPLTEEKIKALTEICADMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTRDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRSKNPEIVIYQYMDDLYVGSDLEIGQHRTK
IEELREHLLAWGFTTPDKKHQKEPPFPWMGYELHPDKWTVQAIQLPEKSSWTVNDIQKLVGKLNWASQIYPGIRIKHLCKLLRGAKALTDVVPLTAEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGHDHWTYQIYQEP-HKNLKTGKYAKRRSAHTNDVKQLTEVVQKIATEGIIIWGKVPKFRLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPIIGAETFYVDGATNREKLGKAGYITDKGRQKVVTLTTTNQKTELQAIHLALQDSGSEVNIITDSQ
YALGIIQAHPDSESELVNQIIEQLIQKERVYLSWVPAHK-------------------
>tr|Q90S52|Q90S52_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIDTIPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFKELNKRTQDFWEVQLGIPPAGLK
KKKSITVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRTKNPEIVIYQYMDDLYVGSDLEIGQHRTK
IDELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYAGIQVKQLCKLLRGAKALTDIVPLTEEAEL
ELAENREILKTPVHGVYYDPSKDLVAEVQKQGQDQWTYQIYQEP-FKNLKTGKYSKKRSAHTNDVRQLAEVVQKIATESIVIWGKTPKFRLPIQRETWET
WWMEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIVGAETFYVDGAASREKLGKAGYVTDRGRQKVVSLTTTNQKTELHAIHLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESEVVNQIIEELIKKEKVYLSWVPAHK-------------------
>tr|Q5DNJ9|Q5DNJ9_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPPAELK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIKYQYNVLPQGWKGSPTIFQSSMTKILEPLRKRNPDIVIYQYMDDLYVRSDLEIGQHRTK
IEELRQHLLKWGFTTPDKKLQKEPPFLWIGYELHPGKWTVQPIVLPEKDRWTATGLPKLVGKLNWASQIYAGIKVRQLCKLLRRTKALTEIIPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEP-FKNLKTGKYARMRGAHTNDIKQLTEAVQKITTESIVIWGKTPKFRLPIQKETWET
WWAEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIAGAETFYVDGAANREKIRKAGYVTNRGRQKVVSLTTTNQKTELQAIHLALQDSGLEVNIVTDSQ
YALGIIQAQPDSESEVVSQIIEELIKKEKVYLAWVPAHK-------------------
>tr|Q5XQF1|Q5XQF1_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 PE=4 SV=1
------------------------------------ICQELEQDGKISKIGPENPYNTPIFAIKKKNSTKWRKLMDFRELNKRTQDFWEVQLGIPPGGLK
QRQSVTVLDVGDAYFSCPLDPDFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIXQSSMTKVLEPFRKDNPELEIYQYVDDLYVAXDLPLAEHRXR
VKLLREFLYQWGFYTPDKKHQQEPPFMWMGYELHPDXWTVQPITLPNKDXWTVNDIQKLIGKXNWASQIXQGIXVRELCKLIRGTKSLTXVVPLSKEAEM
ELEENRELLKEPVHGVYYQPDKDLWVNIQKQGEGQWTYQIYQDE-HKNLKTGKXARQKAAHTNDIRQLAEVIQKVSQEAIVIWGKLPKFKLPVTRETWET
WWADYWQ-ATWIPEWEYVSTPPLIKLWYQLE-SEPIRGAETYYVDGAANRDKLGKAGYVTEQGKQKIIKLDTTNQKAELMAVLLALQDSKEKVNIVTDSQ
YVLGIISSQPXESIPYSSADNRGTNKKG------------------------------
>tr|Q5XQE4|Q5XQE4_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 PE=4 SV=1
-------------------------------EALTAICQEMEQEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQEFWEVQLGIPPGGLK
QKKSVTVLDVGDAYFSCPLDPDFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKDNPELEICQYMDDLYVGSDLPLTEHRKR
VELLREHLYQWGFTTPDKKHQKEPPFLWMGYELHPDXWTVQPIQLPNKDVWTVNDIQKLIGKLNWASQIYQGIRVR-MCKLIRGTKSLTEVVPLSKRQSW
NLEENREKLKEPVHGVYYQPDKDLWVNIQKQGEGQWTYQIYQDE-HKNLKTGKXARQKASHTNDIRQLAEVLQKVSQEAIVIWGKLPKFRLPVTRETWEA
WWADYWQ-ATWIPEWEFVSTPPLIKLWYRLE-SEPIMGAETYYVDGAANRNKLGKAGYVTEQGKQKIIKLDTTNQKAELMAVLLALQDSKEKVNIVTDSQ
YALGIISSQPTSESPIVQQIIEELTKKEQV----------------------------
>tr|Q5DNT6|Q5DNT6_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIATVPVKLKPGMDGPKAKHMAIDRRKIKALAEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDAGDAYFSVPLDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTK
IEELRKHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQISPGIKVKQLCKLLGGTKALTEVIPLTEGAEL
ELAENREILREPVHGVYYDPSKDLIAEIQKQGYGQWTYQIYQEP-FKNLKTGKYARMRGAHTNDVKQLTEAVQKISMESIVIWGKTPKFKLPIQKETWET
WWIDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIAGAETFFVDGAANREKLGKAGYVTDRGRQKVVSLTTTNQKTELQAIHLALQDSGLEVNIVTDSQ
YALGIIQAQPDSESEIVNQIIEQLVKKEKVYLAWVPAHK-------------------
>tr|D3XK13|D3XK13_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
----------------------------------------------------------------KKKSVTVLDVGDA-----------------------
-------------YFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILNPFREQNPEMMIYQYIDDLYVASDLEIGQHRAK
IKELRQHLWRWGFYTPEQKHQKEPPFLWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRELCKLLRGTKALTEVVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGLGQWTYQIYQEP-YKILKTGKYARMKGAHTNDVRQLTEAVQKVATESIIIWGKTPKFKLPIQKETWGA
WWTDYWQ-ATWIPEWEFTNTPPLVKLWYQLE-KEPIEGAETFYVDGAASREKLGKAGYVTNKGRQKVVTLTTTNQKTELQAIHLALQDSGAEVNIVTDSQ
YALGIIQAQPDSKSELVSQIIEQLIKKEKVYLAWVPAHK-------------------
>tr|Q308P1|Q308P1_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTELEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
QKRSITVLDAGDAYFSVPLDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKRNPEMVIYQYMDDLYVGSDLEIGQHRAK
IEELRGHLLKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIRGTKALTDIVPLTAEAEL
ELAENREILKEPVHGAYYDPSKELIAEIQKQGPDQWTYQVYQEP-YKNLKTGKYAKRGSAHTNDVKQLTEVVQKIATEGIVIWGKIPKFKLPIRKETWDV
WWTEYWQ-ATWIPDWEFVNTPPLVKLWYRLE-TEPISGAETYYVDGAANREKLGKAGYVTDRGKQKVITLTTTNQKTELQAINLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESEIVNQIIEQLIKKERVYLSWVPAHK-------------------
>tr|Q99AW9|Q99AW9_9HIV1 Pol polyprotein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKSSSSGTWRKLVDFRELNKRTQDFWEVQLGPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYIDDLYVGSDLEIEQHRIK
IEELREHLLKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDLQKLVGKLNWASQIYAGIKVKQLCKLLRGAKSLTEVVQLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGPGQWTYQIYQEP-FKNLKTGKYARMKGAHTNDVKQLTEAVQKIARESIVIWGKTPKFKLPIQKETWEA
WWAEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPIVGAETFYVDGAANREKLGKAGYVTDKGRQKVVSITTTNQKTELQAIHLALQDSGLEVNIVTDSQ
CALGIIQAQPDSESELVSQIIEQLIKKEKVYLAWVPAHK-------------------
>tr|C1JHP1|C1JHP1_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
----------------------------------------------------------------CTKWRKLVDFRELNKRTQDFWEVQLGIPHP--AGLK
KKRSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTK
IEELRQHLWKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEIVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEP-FKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKVPKFKLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIIGAETFYVDGAANREKLGKAGYVTNRGRQKVVSLTTTNQKTELQAIHLALQDSGLEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEQLIKKEKVYLAWVPAHK-------------------
>tr|Q701S0|Q701S0_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
----------------DGPKVKQWPLTEQKIRALTEICTAMEKEGQISKIGPENPYNNPVFAIKRKDGIRWRKLIDLRELNKRTQDFWEVQLGIPPAGLK
KNKSVTVLDVGDAFYSVPLDKEFRKYTAFTIPSTNNETPGVRYQYNVLPMGWKGSPAIFQSSMTKILEPFKKQNPDIVVYQYMDDLYVASDLEIGQHRTK
IEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAEL
ELAENREILKEPVHGVFYDPTKDLIAEIQKQGQGQWTYQIYQEP-FKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKIPKFRLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIVGAETFYVDGAANREKLGKAGYVTDRGRQKVVPLETTNQKTELQAIHLALQDSGLEVNIVTDSQ
YALGIIQAQPDSESDLVNQIIEQLIKKEKVYLAWVPAHK-------------------
>tr|B2CGP8|B2CGP8_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICKELEEDGKISKIGPENPYNTPVFAIKKKDSDKWRKLVDFRELNKRTQDCWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSIPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQTSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTK
IKELREYLWKWGFYTPDRKHQEEPPLRWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLIKGTKALTEIVPLTKEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWSYQIYQEP-FKNLKTGKYAKMKAAHTNDVKQLTEAVQKIATEGIVIWGKTPKFRLPIQKETWEA
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIVGAETFYVDGAADREKLGKAGYVTNKGRQKVVSITTTNQKTELQAIYLALQDSGLEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEELIKKEKVYLAWVPAHK-------------------
>tr|M1J8F3|M1J8F3_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTELEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
NNKSVTILDVGDAYFSIPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPELIICSYVDDLYVGSDLEIGQHRAK
IDKLREHLWKWGLFTPDKKYQKEPPFRWMGYELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYSGIKVKQLCKLIRGAKALTEVVPLTKEAEL
ELAENKEILKEPVHGAYYDPSKDLIAEVQKQGEGQWTWQVYQEP-FKNLKTGKYAKMRSAHTNDVKQLTEVVQKVAIESIVIWGKTPKFRLPIQKETWET
WWMEYWQ-ATWIPEWEFVNTPPLVKLWYQL----------------------------------------------------------------------
----------------------------------------------------------
>tr|C5J4U4|C5J4U4_9HIV1 Pol protein (Fragment) OS=HIV-1 M CHU14 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIIALTEICTEMEKEGKISRVGPDNPYKTPIFAIKKKESTKWRKLVDFRELIKKRTQDFWEVQLGIPAGLK
QKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEMVIYQYMDDLYVGSDLEIGQHRTK
IEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPVTLPEKDSWTVNDIQKLVGKLNWASQIYPGIKTRQLCKLIRGTKALTDIVPLTREAEL
ELEENREILREPVHGVYYDPSKELIAEIQKQGEGQWTYQIYQEP-FKNLKTGKYAKIRAAHTNDVKQLTEAVQKIATESIVIWGKIPKFRLPIQKETWDT
WWTEHWQ-ATWIPEWEFVNTPYLVKLWYQ-----------------------------------------------------------------------
----------------------------------------------------------
>tr|A0A060GWW1|A0A060GWW1_9HIV1 Polymerase (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTXICXELEKEGKITRIGPENPYNTPIFAIKKKNSDRWRKLMDFRELNKRTQDFWEVQLGIPPAGLK
KNKSMTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNEKPGIRYQYNVLPQGWKGSPAIFQXSMTKILEPFRTKNPEMVIYQYVDDLYVGSDLEIGQHRAK
IKELREYLLKMGLFTPDKKHQEEPPFLWMGYELHPDKWTVQSIKLPEQDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDVVPLTEEAEL
ELAENREILKEXVHGXYYDPAKDLIAEIQKQGNDQWTYQIYQEP-FKNLKTGKYSKMKNAHTNDVKQLTEAVQKISLESIVIWGKTPKFRLPIQKETWDI
WWADYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIEEA-------------------------------------------------------------
----------------------------------------------------------
>tr|A6MW73|A6MW73_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICLEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPEIVIYQYVDDLYVGSDLEIGQHRAK
IEELREHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTDVVPLTAEAEL
ELAENREILKEPVHGVYYDPSKELIAEIQKQGQGQWTYQIYQEP-HKNLKTGRYAGTTSAAPTDVEQLTEAVLQISLESIVIWGKIPKFILPILQETWET
WWTKYWR-AAWIPDWEFVDTPPLVKLWYQLE-TEPIVGAET-----------------------------------------------------------
----------------------------------------------------------
>tr|Q8Q892|Q8Q892_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTRNPEMVIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTEIVTLPEEAEL
ELAENREILKEPVHGVYYDPTKDLVAEIQKQGQDQWTYQIYREP-FKNLKTGKYAKKRSAHTNDVKQLTEVVQKVATESIVIWGKTPIFRLPIQKETWEA
WWMEYWQ-ATWIPEWEFVNTPPGSKIMVPVR-ERPHSRSRN-----------------------------------------------------------
----------------------------------------------------------
>tr|M1J902|M1J902_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SKIETVPVALKPGMNGPKVKQWPLTAEKIKALTEICTELEKEGKISKIGPENPYNTPVFAIKKKNSTKWRKLVDFRELNKRTQDFWEVQLGLPPAGLQ
KNKSVTVLDIGDAYFSVPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILAPFRAKNPEIVIYQYVDDLYVGSDLEIEQHRAK
IEELRAYLWDWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKSLTDVIPLTKEAEL
ELAENREILKEPVHGVYYDPSKDLIAEVQKQGQDQWTYQIYQEP-FKTLKTGKYARRKSAHTNDVKQLTELVQKVAQECIVIWGKTPKFKLPIQKETWEA
WWMDYWQ-ATWIPEWEFVNTPPLVKLWYQL----------------------------------------------------------------------
----------------------------------------------------------
>tr|Q2A7Q5|Q2A7Q5_9HIV1 Polyprotein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SSIDTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICMEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSVNNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPEIVIYQYMDDLYVGSDLEIGQHRKK
IEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKEAWTVNDIQKLVGKLNWASQIYPGIKIKQLCKLLKGAKALTDIVPLTTEAEL
ELAENREILKEPVHGVYYDPSKEIIAELQKQGQGQWTYQIYQEP-YKNLKTGKYAKGGSAHTNDIKQLTEAIQKIATECIVIWGKTPKFKLPIRKETWEI
WWTDYWQ-ATWIPDWEFVNTPPLVKLWYRWK-QNPYRA--------------------------------------------------------------
----------------------------------------------------------
>tr|A4UBK7|A4UBK7_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPVKTVPVTLKPGMDGPKVKQWPLTEEKIKALTAICKEMEEEGKISKIGPDNPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLE
QKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNATPGVRSRYHGLPPGWKGSPAFFRRSMTKILEPFRSQNPDIIIYQYVDDLYVASDLEIGQHRAK
IEELRAHLLKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDVVTLTEEAEL
ELAENREILKDPVHGVYYDPSKDLVAEIQKQGQDQWTYQIYQEP-FKNLKTGKYAKKRSAHTNDVRQLVEVVQKVVTESIVIWGKAPKFRLPIQKETWET
WWMEYWQ-ATYIPEWEFVNTPPLVKLWYQLE-KDPIAGAETF----------------------------------------------------------
----------------------------------------------------------
>tr|Q8Q881|Q8Q881_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIDTVPVKLKPGMDGPKVKQWPLTEEKIKALTEICAELEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHTEK
VEELREHLLKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQAIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDIVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEVQKQGLDQWTYQIYQEP-FKNLKTGKYAKRRTTHTNDVRQLVELTQKVCMESIVIWGKIPKFKLPIQRETWET
WWADYWQ-ATWIPEWEYVNTPPLVKLWYQLE-KEPIMGAETAS---------------------------------------------------------
----------------------------------------------------------
>tr|Q0H8N9|Q0H8N9_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPEMVIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPAKGTGHPIKLPKKNSWTAKDIQKLWGKLNGPSQIYPGIKVNQRCKPLRGAKALPETVILTEEANL
KLAENREILKEPARGVYYDPTKDLVAEIQKQGQDQWTYQIYQEP-FKNLKTGKYAKKRSAHTNDVKQLTEVVQKVSTESIVIWGKTPKFRLPIQRETWEA
WWMEYWQ-ATWIPDWEFVNTPPLVKLWYQLE-KDPIVGAET-----------------------------------------------------------
----------------------------------------------------------
>tr|A4KCV7|A4KCV7_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTELEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLE
KKKSVTILDVGDAYFSVPLDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPYRTKNPEIVIYQYVDDLYVSSDLEIGQHRAK
IEELREHLWKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEIVTLTAEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEP-YKNLKTGKYARTKSAHTNDVKQLTEAVQKIAQESIIIWGKTPKFRLPIQKETWDI
WWTNYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPIVGAETFYVEWRQLTEQKREKQD------------------------------------------
----------------------------------------------------------
>tr|A4KCW9|A4KCW9_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLSKEKIIALTDICKELEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
QNKSVTVLDVGDAYFSVPLDKSFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPEMEIYQYVDDLYVGSDLEIGQHRAK
IEELRDHLLKWGFYTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPDKDRWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVTLTEEAEL
ELAENREILREPVHGVYYDPTKDLVAEIQKQGQDQWTYQIYQEP-FKILKTGKYAKRRSAHTNDVKQLTEVVQKAALESIVIWGKTPKFRLPIQKETWEA
WWMEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIMGAETFYVDGASNREKLGKAGYVTDRGRQKVFPLP-----------------------------
----------------------------------------------------------
>tr|G8GPN7|G8GPN7_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALKAICEEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRTKNPEMVIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDLQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTDIVPLTEEAEL
ELAENREILKETVHGAYYDPSKDLIAEIQKQGQGKGRYQIYQEL-LKTVKSGKYAKMRTAGEADVKQLTEAVQKIAIESIVIWGKTHKFGVTPHKGTWEQ
GAQAIAK-PPGCSSGSKCNPPPHSSR-------------------------EVSKGG-------------------------------------------
----------------------------------------------------------
>tr|A4KCX5|A4KCX5_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTKEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KNKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKKNPEMVICQYVDDLYVGSDLEIGQHRAK
IDELREHLLKWGFFTPDEKHQKEPPFLWMGYELHPDKWTVQPIQLPDKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDIVPLTAEAEF
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGRDQWTYQIYQEA-HKNLKTGKYARMRSAHTNDVKQLTEVVQKIAIESIVIWGKTPKFRLPIQKETWET
WWTEYWQ-ATWIPDWEFINTPPLVKLWYQLE-TEPIVGAETFYVDGAANRERNGKAGYVTDRGRQKVVSLTTTNQKTE----------------------
----------------------------------------------------------
>tr|D3XG05|D3XG05_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVICQYMDDLYVGSDLEIEQHRAK
IEELRQHLLGWGFTTPDNKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRELCKLLRGTKALTEVVPLTREAEL
ELEENREILKEPVHGVYYDPSKDLIAEIQKQGLGQWTYQIYPEP-YKNLKTGKYARMRGAHTNDVKLLTEAVHRIATESIVIWGKTPKFKLPIQKETWEA
WWTEYWQ-ATWIPEWEFINTPPLVKLWYQLE-KDPIEGAETFYVDGAASREKLGKAGYVTDKGRQKVVTLTTTNQKTELQAIHLALQDSGVEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEELIKKEKVYLTWVPAHK-------------------
>tr|G0YG23|G0YG23_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCADMEKEGKISKIGPENPYNTPVFAIKKKNSTRWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSLNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRLKNPDIVIYQYVDDLYVGSDLELGQHRTK
IEELREHLLKWGLTTPDQKHQKEPPFLWMGYELHPDKWTVQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVPLTAEAEL
ELAEDREILKEPVHGVYYDPSKDLVAELQKQGQGQWTYQIYQEP-CKNLKTGKYAKMRSAHTNDVKQLTEAVQKIAQECIVIWGKTPKFKLPIQKETWEA
WWTNYWQ-ATWIPEWEFVNTPPLVKLWYQLE-TEPITGAETFYVDGASNREKKGKAGYVTDRGRQKAITLTTTNQKAELQAIHLALQDSGSEVNIVTDSQ
YVLGIIQAQPDSESELVNQIIEQLIRKEKIYLSWVPAHK-------------------
>tr|A1XIQ5|A1XIQ5_9HIV1 Reverse transcriptase (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=4 SV=1
--SSIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICAEMEKEGKISKIGPENPYNTPIFAIKKKDGTWRKVVDFRELNKRTQDFWEIQLGIPHPSGLK
KKKSLTVLDVGDAFFSVPLDKDFRKYTAFTIPSLNNETPGIRYQYNVLPMGWKGSPAIFQSSMTRILEPFRKQNPDIIICQYMDDLYVASDLKIEQHRTK
IEELRAHLLKWGLTTPDKKYQKEPPFLWMGYELHPDKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVVPLTKEAEL
ELAENREILKEPVHGVYYDPSKDLVAEIQKQGQGQWTYQIYQEP-FKNLKTGKYARTRGAHTNDVKQLTEAVQKIATEGIIIWGKIPKFRLPIQKETWDT
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIAGAETFYVDGAANREKLGRAGYVTDRGRQKVVSLTTTNQKTELQAIQLALQDSGSEVNIVTDSQ
YALGIIQSKPDSESELVNQIIEQLINKEKIYLAWVPAHK-------------------
>tr|A0A0F7KBH7|A0A0F7KBH7_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKIKQWPLTEEKIKALTEICTEMEKDGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEMVIYQYVDDLYVASDLEIEQHRIK
IEELRGHLWKWGFYTPDKKHQKEPPFLWLGYELHPDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRYLCRCLRGAKALTEVVPLTKEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEQ-YKNLKTGKYAKMRGAHTNDVKQLTAAVQKIAQECIVIWGKTPKFRLPIQKEIWET
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIVGAETFYVDGASNREKLGKAGYVTDRGRQKIVSLTTTNQQTELHAIALALQDSGLEVNIVTDSQ
YALGIIQGLPDSESELVNKIIEELIKKEKVYLSWVPAHK-------------------
>tr|H2DQI5|H2DQI5_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPGGLK
QKRSVTVLDVGDAYFSVPLYEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRAQNPEIVIYQYMDDLYVGSDLEIRQHRAK
IEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIHLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCRLLRGAKALTDIVPLTAEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQDQWTYQIYQEP-FKNLKTGKYTKMRTAHTNDVKQLTEAVQKIAMESIVIWGKTPKFRLPIQKDTWET
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIAGVETFYVDGAANREKKGKAGYVTDRGRQKIVSLSTTNQKTELQAICLALQDSGPEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEQLIRKERVYLSWVPAHK-------------------
>tr|F2WKH4|F2WKH4_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICAEMEKEGKISKIGPENPYNTPVFAIKKKGSDKWRKLMDLRELNKRTQDFWEVQLGIPPAGLK
QKKSATVLDVGDAYFSVPLHEDFRKYTAFTIPSINNETPGIRYQYNVLPMGWKGSPAIFQSSMTKILEPFRSKNPEIVIYQYVDDLYVGSDLEIGQHRAK
VEELRAHLLRWGLTTPDKKHQKEPPLLWMGYELHPDKWTVQTIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCRLLRGAKALTDIVPLTKEAEL
ELEENREILKESVHGVYYDPAKDLIAEIQKQGQDQWTYQIYQEP-FKNLKTGKYAKRKSTHTNDVKQLAEAVQKISTECIVIWGRTPKFRLPIQKETWET
WWTDNWQ-ASWIPEWEFVNTPPLVKLWYQLE-QEPIIGAETFYVDGAANREKLGKAGYVTDRGRQKVVPLTTTNQKTELHAIYLALQDSGLEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEKLIEKERVYLSWVPAHK-------------------
>tr|F2WKQ5|F2WKQ5_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIEPVPVKLKPGMDGPKVKQWPLTEEKLKVLTEICEEMEKEGKISKIGPENPYNTPVFVIKKKDGNKWRKLIDFRELNKRTQDFCEVQLGIPPAGLK
RKKSVTVLDVGDAYFSVPLDENFRKYTAFTVPSTNNATPGIRYQYNVLPMGWKGSPAIFQSSMTKILEPFRAKNPELVIIQYVDDLYVGSDLEIGKHRAK
IDELRQHLFKWGLTTPDKKYQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDVIPLTEEAEL
ELAENREILKEPVQGVYYDPTKDLIAELQKQGDDQWTYQIYQEP-FKNLKTGKYAKMRTAHTNDVKQLTEAVQKIAMESIVIWGKIPKFRLPIQKETWDT
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIAGVETFYVDGAANRDKAGKAGYVTDRGRQKVVSLTTTNQKTELHAIQLALQDSGPEVNIVTDSQ
YALGIIQAQPDSESEIVNNIIEQLIKKERIYLSWVPAHK-------------------
>tr|G0YFR5|G0YFR5_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCMELEQDGKISKIGPENPYNTPIFAIKKKNSERWRKLMDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSIPLHEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPYRKQNPEIVIYQYVDDLYVGSDLEIEQHRTK
IEELREHLWKWGFYTPEKKHQKEPPFLWMGYELHPDKWTVQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVPLTEEAEL
ELAENREILKEPVHGXYYDPSKDLIAEIQKQGPDQWTYQIYQEP-FKNLRTGKYAKSRGTHTNDVKQLTEAVQKIAHESIVIWGKVPKFRLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIIGAETFYVDGAANREKLGKAGYVTDRGRQKAISXTTTNQKTELQAINLALQDSGXTVNIVTDSQ
YALGIIQAQPDSESDLVNQIIEQLIKKEKVYLAWVPAHK-------------------
>tr|G0YFM2|G0YFM2_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAELEQDGKISKIGPENPYNTPVFAIKKKNSTKWRKLVDFRELNKRTQDFWEVQLGIPPGGLK
KKKSITVLDVGDAYFSIPLDEDFRKYTAFTIPSTNNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKHNPDIVIYQYMDDLYVGSDLEIEQHRTK
IDELRQYLWRWGFYTPDRKHQKEPPFLWMGYELHPDKWTVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTEVIPLTEEAEL
ELAENREILREPVHGVYYDPTKELIAEIQKQENSQWTYQIYQEP-FKNLKTGKYAKIRSAHTNDIKQLTEAVQKIATESIVIWGKIPKFKLPIQKETWEA
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIEGAETFYVDGAANREKLGKAGYVTNRGRQKVVSFPTTNQKTELQAIRLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVSQIIEQLINKDKVYLAWVPAHK-------------------
>tr|A4KCW8|A4KCW8_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPRVKQWPLTEEKIKVLTEMCAEMEKEGKLSRIGPENPYNTPIFAIKKKDSTKWRKLIDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAFYSVPLDENFRKYTAFTIPSINNETPGIRYQYNVLPMGWKGSPAIFQASMSRILEPFRTRNPEIVICQYIDDLYVSSDLEIGQHRAK
IEELREHLLKWGFTTPDNKHQKEPPFLWMGYELHPDKWTVQPIMLPDKDCWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVTLTEEAEL
ELAENREILKEPVHGVYYDPAKDLIAEIQKQGQDQWTYQIYQEP-FKNLKTGKYARQRSAHTNDVRQLAEVVQKVSTESIVIWGKTPKFRLPIQRETWEA
WWMEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIAGAETFYVDGAANREKLGKAGYVTDRGRQKVISLTTTNQKTELHAIDLALQDSGSEVNIVTDSQ
YALGIIQALPDSESELVNQILEKLIGKDKVYLSWV-----------------------
>tr|B7TEG8|B7TEG8_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVRQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQ---------
LGIPHPAGLKKKKSVTVLDVGDAYFSTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPDIVIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKTLTEIVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEP-FKNLKTGKYAKMRSAHTNDVKQLAEAVQKIAVESIVIWGKTPKFRLPIQKETWEI
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIAEADTFYVDGAANREKMGKAGYVTDKGKQKI---------------------------------
----------------------------------------------------------
>tr|B7TEI3|B7TEI3_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SHIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELIPSINNE-------------
----TPGIRYQYNVLPQGWKGSPSIF---------------------------------QSSMTKILEPFRTENPEIVIYQYMDDLYVGSDLEIGQHRAK
IEELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIVPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGHDQWTYQIYQEP-FKNLKTGKYAKMRTAHTNDVKQLTEAVQKIALESIVIWGKTPKFRLPIQKETWEI
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIAEVETFYVDGAANREKIGKAGYVTDRGRQKIVSLSTTNQKAELQAIQLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEQLINKERVYLSWV-----------------------
>tr|B7TEV5|B7TEV5_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETIPVKLKPGMDGPKVKQWPLAEEKIKALTAICEEMEKEGKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGI---PHP
AGLKKKQSVTVLDVGDAYFSVPLDEG---------------------------------FRKYTRILEPFRTQNLEIVIYQYMDDLYVGSDLEIRQHRAK
IEELREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDDWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIIPLTEEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGDDQWTYQIYQEP-FKNLKTGKYAKRRAAHTNDVKQLTEAVQKICMESIVIWGKTPKFRLPIQKETWEI
WWTDYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIAGAETFYVDGAANRDKIGKAGYVTDRGRQKIVTLSTTNQKTELQAIQLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEQLINKEKVYLSWVPAHK-------------------
>tr|H6CZQ1|H6CZQ1_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVTLKPGMDGPRVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTK
IEELRLHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIELPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTELIPLTEEAEL
ELAENREILKETVHGVYYDPEKDLIAEIQKQGQGQWTYQIYQEP-FKNLKTGKYARVRGTHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIVGAETFYVDGAADREKLGKAGYVTNRGRQKVVSITTTNQKTELQAINLALQDSGSEVNIVTDSQ
YALGIIQAQPKYLAWVPAHKGLGGSEQVDLVSSWLVLLT-------------------
>tr|A4KCY4|A4KCY4_9HIV1 Pol protein (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTELEKDGKISKIGPENPYNTPVFAIKKKDSDKWRKLVDFRELNKRTQDFWEVQLGIPPAGLK
KKKVATIIDVGDAYFSVPLDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQARHDKILEPFRTKNPEIVIYQYVDDLYVGSDLEIGQHRAK
VEELRGHLLKWGFYTPDKKHQQEPPLRWLGYELHPDKWTVQSIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCRLLRGAKALTDIVTLTEEAEL
ELAENREILKEPVHGVYYDPTKDLIAEIQKQGQDQWTYQIYQEP-FKNLKTGKYAKKRSAHTNDVKQLTEVVQKVATESIVIWGKIPKFRLPIQKETWDT
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KDPIVGAETFYVDGAANREKLGKAGYVTDRGRQKVISLPTTNQKTELHAIYLALQDSGSEVNIVTDSQ
YALGIIQAQPDSESELVNQIIEKLIGKDKVYLSWVPAHK-------------------
>tr|Q9DII8|Q9DII8_9HIV1 POL (Fragment) OS=Human immunodeficiency virus 1 GN=pol PE=3 SV=1
--SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICAELEKDGKISKIGPENPYNTPVFVIKKKNGQGVWRKLVDFRELNKRTQDFWEVQLGIPAGLK
KKKSVTVLDIGDAYFSIPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKRNPEIVICQYMDDLYVASDLKIGQHTTK
IEELRQYLWKWGFYTPDKKHQQEPPFRWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTKEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEP-FKNLKTGKYARTRSAHTNDVKQLTEAVQKIATESIVIWGKIPKFKLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWYQLE-KEPIVEQNFLCRWA------------------------------------------------------
----------------------------------------------------------
>tr|C1KCX3|C1KCX3_9HIV2 Pol protein (Fragment) OS=Human immunodeficiency virus 2 GN=pol PE=3 SV=1
--AKVEPIKVTLKPGKDGPKLRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPPAGLA
KRRRITVLDIGDAYFSIPLHEDFRKYTAFTIPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRHVLEPFRKANQDVTIIQYVDDILIASDRTDLEHDRV
VLQLKELLNGLGFSTPDEKFQEDPPFQWMGYELWPTKWKLQKLQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTRHLCRLIRGKMALTEEVQWTELAEA
ELEENKIILSQEQEGSYYQEEKELEATVQRNQDNQWTYKIHQED--KTLKVGKYAKIKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTWEQ
WWDSYWQ-VTWIPEWDFTSTPPLVRLAFNLV-GDPIPGAETFYTDGSCNRQKEGKAGYVTDRGRDKVKVLETTNQQAELEAFAMAVTDSGPKVNIVVDSQ
YVMGIVAGQPTSESKIVNQIIEEMIKKEAIYVAWVPA---------------------
>tr|V5KB20|V5KB20_9HIV1 Polymerase (Fragment) OS=Human immunodeficiency virus 1 PE=3 SV=1
--SPVETVPVQLKPGMDGPKVKQWPLTEEKIKALTEICTELEKEGKISKIGPENPYNTPIFAIKKKSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLK
KKKSVTILDVGDAYFSVPLDKNFXKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSTMLKVLEPFXTRNPXLVICQYVDDLYVGSDLEIGQHRAK
IEELREHLLKWGFTTPDNKHQKEPPFRWMGYELHPDKWTVQAIQLPDKESWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIVPLTAEAEL
ELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEP-YKNLKTGKYARIKSTHTNDVRQLTEAVQKISLESIVIWGKTPKFRLPIQKETWET
WWTEYWQ-ATWIPEWEFVNTPPLVKLWY-QLEKDPIMGAETFYV--------------------------------------------------------
----------------------------------------------------------
>tr|A0A0E9DF45|A0A0E9DF45_CHLTH Reverse transcriptase (RNA-dependent DNA polymerase) OS=Chlamydia trachomatis GN=ERS082929_01028 PE=4 SV=1
------------------MWVPQWHLSSEKLEAVIQLVEEQLKLGHIEP--STSPWNTPIFVIKKKSGKWRLLHDLRAINEQMNLFGPVQRGLPVLSALP
RGWNLIIIDIKDCFFSIPLCPRDRPRFAFTIPSINHMEPDKRYQWKVLPQGMSNSPTMCQLYVQEALLPVREQFPSLILLLYMDDILLCHK-DLTMLQKA
YPFLLKTLSQWGLQIATEKVQISDTGQFLGSVVSPDKIVPQKVEIRRDHLHTLNDFQKLLGDINWLRPFLKSAELRPLFSILEGDPHISSPRTLTLAANQ
ALQKVEKALQ-NAQLQRIEDSQPFSLAITHFGRSDWAVLVTSFSGRNPLKNGAYVAQRIEDSDWYPDAIQLALKGLKAAITHFGQSPYLLIPYTAAQVQT
LASNDWA-VLVTSFKIDNHYPPILQFPQITV-RNPLKNGIVVYTDG----SKTGIGAYVANG-KVVSKQYNNSPQVVECLVVLEVLKTFLEPLNIVSDSC
YVVNAVNLLEVGVIKPVANIFQQLSRRSPVYITHVRAHSGLPGNDLADKATKVVAA--
>sp|P03365|POL_MMTVB Pol polyprotein OS=Mouse mammary tumor virus (strain BR6) GN=pol PE=3 SV=2
------------------VWLNQWPLKQEKLQALQQLVTEQLQLGHLEE--SNSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPSPVAVP
KGWEIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLCQKFVDKAILTVRDKYQDSYIVHYMDDILLAHP-SRSIVDEI
LTSMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDSVSYQKLQIRTDKLRTLNDFQKLLGNINWIRPFLKTGELKPLFEILNGDSNPIST---TPEACK
ALQLMNERLS-TARVKRLDLSQPWSL------------------------------------TPYDIFCQLIIKGRHRSKELFSKDPDYIVPYTKVQFDL
LEKEDWP-ISLLGFEVHFHLPPLLTFPHMTS-TTPLEKGIVIFTDG----SANGRSVTYIQGREPIIKENTNTAQQAEIVAVITAFE-ESQPFNLYTDSK
YVTGLFPEIETTLSP-IYTELKHHKRQEKFYIGHIRGHTGLPGNAYADSLTRIL-T--
>tr|Q0VGN5|Q0VGN5_MOUSE BC094435 protein (Fragment) OS=Mus musculus GN=BC094435 PE=2 SV=1
-----------------------------------EIAESVRKYGTNAN--FTLAQLDRLAGMALTPADWQMIAKAALPSMWRALWQQARANAAALTPEQ
RDWTFDLL---------------------TGQRAYSAKPDKRYQWKVLPQGMSNSPTMCQLYVQEALLPVREQFPSLILLLYMDDILLCHK-DLTMLQKA
YPFLLKTLSQWGLQIATEKVQISDTGQFLGSVVSPDKIVPQKVEIRRDHLHTLNDFQKLLGDINWLRPFLKSAELRPLFSILEGDPHISSP---TLAANQ
ALQKVEKALQ-NAQLQRIEDSQPFSL------------------------------------DWYPDAIQLALKGLKAAITHFGQSPYLLIPYTAAQVQT
LASNDWA-VLVTSFKIDNHYPPILQFPQITV-RNPLKNGIVVYTDG----SKTGIGAYVANG-KVVSKQYNNSPQVVECLVVLEVLKTFLEPLNIVSDSC
YVVNAVNLLEVGVIKPVANIFQQLSRRSPVYITHVRAHSGLPGNDLADKATKVVAA--
>sp|P04026|POL_IPHA Putative Pol polyprotein OS=Hamster intracisternal a-particle H18 GN=pol PE=3 SV=1
------------------LWVSQWPLSSEKLEAVTRLVQEQERLGHLEP--STSPWNTPIFVIKKKSGKWRLLHDLRAINNQMHLFGPVQRGLPLLSALP
QDWKLIIIDIKDCFFSIPLYPRDRPRFAFTIPSLNHMEPDKRFQWKVLPQGMANSPTICQLYVQEALEPIRKQFTSLIVIHYMDDILICHK-ELDVLQKA
FPMLVAELKQWGLEIASEKVQIADTGLFLGSKITPKNIVPQKIEIRKDHLQTLNDFQKLLGDINWLRPFLKSADLKPLFDLLEGEPHISSPRKFTPAAHR
ALQMVEEALQ-EAQ------------------------------------------------DWYPDAVQPR-SRIKAAVTHFGRDPDSLIPYTAAQVQT
LTSSDWA-VLVTSFQIDNHFPPILQFPQVTA-KDPLPDGTVVYTDG----SKTGLGAYVVKD-RVISKQYNTSPQVVECLIVLEVLEAFPGPLNIVSDSS
YVVNAVNLLEIGIIRSVANIFQKLNRRFPVFITHVRAHSGLPGNDLADKATKLVAT--
>tr|M3ZCD7|M3ZCD7_NOMLE Uncharacterized protein OS=Nomascus leucogenys PE=4 SV=1
-------------------------------MAATQLVQEHLLAGHIEP--STNPWNTPIFVIKKKSGKWRLLQDLRAVNATMLPMGALQPGLPSSTAIP
KNWSAFVIDLKDCFFTIPLHSNDKARFAFSLPSINFRQPMARYQWKVLPQGMANSPTLCQKYVAVALQSFRAQFPHIYCLHYMDDILIAGE-VFAELRQA
LLFLQQHLPTFGLQIAEEKIQQTFPLIYLGQKIAETTISSQKIQFNLSKLQTLNDFQKLLVDINWVRPFLSTADLLPLFDILSGSSDPTSP---TSEAKQ
APQLVESAIQ-HAHVSRIDYTRPLLL------------------------------------QPYVELVQLIMAGRKRSRQIYGKDPDILTAFTQQQIVS
LFNISWQ-IALSNFQLSVHYPKLLTFPLHHS-HQPLAHAHLLFTDG----SKTGVAAVIADN-RPFRFPTTSSPQRVELFAVCQALQMFSEPTNIYTDSE
WVFRSSTHIESTISSLLYQLLSLRQRTAACFVGHIRSHSLLPGNAAADKLCFFTEN--
>tr|A0A075T5X2|A0A075T5X2_SIV Pol (Fragment) OS=Simian immunodeficiency virus PE=3 SV=1
------------------PKVKQWPLSAEKIQALKEIVQDMVDKGQLEKVGPENPYNSPVFCIRKKKTKWRMLIDFRKLNEHTQDLAEVQLGIPHPAGLP
KKAQVSIVDIKDAYYAVPLHEDFQRYTAFTIPSVNNMGPGERYQFKVLPQGWKASPTIFQNTIGDLLQQIRKKYPQVLMIQYMDDLLIGSDETITEHRKI
VEQIRNILLKQGLQTPEEKYQPQRPVNWLGYELRPREWTIPKITLPVKQAYTVNEIQKLVGQLNWASQIYPGIKTKALCKLIRGTKGLTEEVQVTEEAET
ELAENQAILDQEAKGGYYDAEKPLEVDIIQLGGTQWGYTVRQD--KEVLKTGKFAKQRSAHSNPFKQLADAIMKIGKESLVYWGRIPQFNVPVNKEQWDA
WWSEHWQ-VSWIPDIKPVHTPPLIQMWYQLV-QEPIPEAETWYIDGAARESKLGKAGYVTDRGKEKVVALETTNQKAELQALLLALQDGGTKQNIVTDSQ
YVLGVVTGAPTTDHPILEQIITQLQSKEAIYLSWVPAHKGIGGNEAVDKLVSKGIR--
>tr|I6LDG6|I6LDG6_SIV Pol protein (Fragment) OS=Simian immunodeficiency virus GN=pol PE=3 SV=1
------------------PKIKQWPLTREKIEGLQIIIDDMVKAGQLEEVGPENPYNSPVFAIRKKKTQWRMLIDFRALNQATQDFAEVQQGIPHPSGLP
QMKQITVLDMKDAYYSIPLDPDFSQYTAFTIPSLNNDRPGRRYQFKVLPQGWKGSPTIFQHTSDQLLRKFRDKYPQVALFQYMDDLLVGSNESLEEHRRI
VGELRALLNKVGIQTPEAKYQDKPPIKWLGYELYPDKWKVQPIELPDKLTWTVNELQKLIGKLNWACQIYSGIKTKALCRYLRGVKGLLEEVQLSEEAEA
ELAENREILAEETHGTYYQEGEPLEAELTKLAEGQWGYMIKQG--KRLLKTGKFAKQRTAHSNPYQQLIGAMQKIGKESIVFWGQVPVFRIPVVKEEWEQ
WWTEHWQ-CSWIPTIVPIHTPPLVRLWYNLV-QEPIEGADTYYVDGAARESKEGKAGYVTATGKEHVIKLETTNQKAELEAVLLALKDSGPKVNIVTDSQ
YVYGILAGSPTTDNKIIEDIIQLLLSKEAVYLAWLPAHKGIGGNEQVDKLVSQGIR--
>tr|Q98WW2|Q98WW2_ALV Truncated Pr160 gag-pol polyprotein OS=Avian leukosis virus PE=4 SV=1
--ALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGH---IEPLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALP
RGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDGLEAA-
GEEVISTLERAGFTISPDKIQREPGVQYLGYKLGSTYVA--PVGVAEPRIATLWDVQKLVGSLQWLRPALG-IPPRLFYEQLRGSDPWREIVQLSTTAAL
ER---------------WDPALPLEGAVARCRPCLWLFST---QPT------------KAFTAWLEVLTLLITKLRASAVRTFGKEVDIDLPLPEGILLA
LFAGKIR-SSDTPSIFDIARPLHVSLKV-RVTDHPVPGPTVFTDASSSTH--KGVVVW--REGRWEIKEIALSVQQLEARAVAMALLWPTTPTNVVTDSA
FVAKMLLKMGQVPSTAAAFILEDALSQRSAMVLHVRSHSEVPGNDVADS---------
>tr|M3WRF8|M3WRF8_FELCA Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
----------KWF-IDEPIWIE-SPLSQEKLAALKSLASQQLEARHIEP--STSPWNSPVFVIEKKSGKWRMLTDLRAINKIIQPMRALQPGLPTPAAIP
RDWKIIIVDLKDCFFSIPLSPKDSERFAFSVPVINHEEPISKFQRKVLPQGILNSPNLCQLFVAKPLRFLRSQFPHAKIIHYMDEILLALP-ERHDLHAL
FLAAQATLSKYGLLIAEDKIQFEDPLFYLGQKLVQNSIMSQNVQIRRDTLHTLNDFQKLLGDINWC---IPTYQLTHLFDVLKGNSNLNSPRKLTPEAPQ
KLQWIEQKIASYQL--------PVSLLILL-LPHSPAGILWQAN-GILKRIFLSNK-PKKLSTYLDKTGMLILKSWERLKEITTQDPEIIVPLSHAQISM
AYRQCWQLGVANKLIEFIKTTSFI--MPRVVQSVPVNG-PNYFTDANKS----SYSAYYG-PT-SKCVKSPASVQKDELLAIFLLLKDVPSSINILKDSA
YSKKVIENLETVNSDLFF-QVQHCLPTPILYTTHIQSHSGLPGNATVDSLLA------
>tr|W5NU59|W5NU59_SHEEP Uncharacterized protein OS=Ovis aries PE=4 SV=1
----------TWK-SQDPVWVERWPLPKEKLLAAKTLITGQL-------------------------------------ESTMEDMGASQPGIPSPVAIP
EGYNIIVIDLQDCFFTIPLNPVDKKRLVFSLPSENFKQPYLRFQGKVLTQGMKNRPTLCQKFVNATLEDIRAKYEQVYMTHYMDDILIAHP-DRAHLQTV
LQDLTKALTARGLIVAPEKIQVNPPITYLGRKT----VTHAPVQLRKDRLVTLNYYQRLLGDINWIRPKLTSVELKPFFKHLG-GANPTSKRQLTAEAQE
ALGKVEAALSDSCVKRID-LTIIWQFLCLT-TSTAPTRVLWQN--GSLEWIHLPAQAKKVVASYPGLIATMILKGRKRSIEFFGKEPAIVIPYNKEQLDS
FLMFDWQIAIRNVLLTFMSKHPVI--FPVRCKQYLIPDAQIAFTDGSAN----GKASIVTKNH-QKIFETQTLAQRAEITAVTETFVMFAEEFNLYSDSQ
DVVRLFSHIETAVFHLLT-KL----QNTIFFIGHIRAHSGQPGL------TK------
>tr|W5Q0K1|W5Q0K1_SHEEP Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1
----------------------------------------------------------------------------------IEPMGALQLGLPSPALIP
QNGSLMVLDLKDCFFTIPLQLQDRDKFAFTVPVLNHAQPVKHYQWTVLPQGMINSPTLCQEFVARSLQSLRQEYPNYILYHYMDDLLLAAP-SIAERDEF
FLKVQEALRLYNLQIALEKIQKDFPISYLGTILEQHRIRPQKLQIRRDHLKTLNDFQKLLGDINWLCPGIPTYQLRHLFSTLEGDTALDSPRTLTPLALQ
ELQFVEQRLNDGFLTYLH-ASQPISFIIFH-TPYSPSGVIAQEK-GLIEWVFLPNSFSKKLTTYMDKLAFLIQKGHHRILQLSGCEPHIVTQLTTAQISR
CLQFNWQISLASKLIDFLRTNTMI--SHSPISDVPVKG-PTIFTDANKN----T-AGYWTPES-SKVLPHSSSVQPAELWAIYLVLQDFPLPINIVSDSR
YAVLSCLQLPHVSDKLFY-QVQQLLRSELIFFTHIRAHSALPGNATIDALLY------
>tr|W5NU71|W5NU71_SHEEP Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1
----------KWL-TDVPKWVEQWPLPKVKLEALKQLVKEQLQSGHIEP--STSPEIP-VFVIKKK----NLLTDLREVNKCIKPMGALQLDLPSPALIP
QNWSLMVLDLKD-FFNIPLQIKDRNKFAFTIPAYNHGQPVKRYQWTVLPQGMINSPTLCQEFVNRALITVRQQFSNCLLYHYIDDLLLAAP-SKEERDTF
FIHVKKALSDFNLQIAPEKIQTEFPISYLGAILERQRIKPQKVQIRRDNLKTLNDFQKLLGDINWLRPGIPTHQLRHLFSTLEGDTALNSPRSLTSQAKE
ELHFVEQRLNEGFLTYLQ-QDQPIYFIVFH-TPYSPTGVIAQSA-GLIEWVFLPNNYTKKLTTYTDRIAFLILKGRGRIIQLIGSDPQIITQLTSTQISN
CLQFNWQIALASKMIDFLRHTSMV--CKSPISNIPVEG-KTIFTDANKN----T-AGYWTDTT-SKVVPHSSSVQPAELWAICLALQDFFIPINIVSDSK
YAVFSCIYLPEATDKLFF-QVQQLL-------SHIRAHSSLPGNANIDALLY------
>tr|Q8NFP1|Q8NFP1_HUMAN Pol protein (Fragment) OS=Homo sapiens PE=4 SV=1
----------SWL-DNKPKWIPQWPLTQEKLAAVNDIVLQQLEAGHLQP--STSPWNTPVFVIKKKSGKYQLLHDLRAVNQQMQPMGALQPGLPVPTMIP
KHWPLIVLDLKDCFFSIPLHEQDIQRFAFTVPSINHQGPDKRYEWKVLPQGMTNSPAICQLYVDQAVEPVRQQCPKVQILHYMDDLLITAE-SESHLMEA
YKLLLLYLEKVGLQVAPERIQKGEVVQYLGLKVTSEKVTPLEFEIAIDGLQTLNDFQKLCGNLNWLRPKLTTEDMMPLFNILEGDAQLDSPRRLTKEARL
ALQKIEKQIKAMQMERCD-PQQALEILIFM-EQLYPFAVIWQG--EPLLFVYPHSHAPRVLYTQGIAVADLILTAIKKVTEMAGKTPKCVVPFAQEAVEA
FTRECWAYIVLIPFVNFCTQVSIK--RVQKVRRDPIQGAVTVFTDGAKG----GTGAAILNNQ-RYFVLTAPSPQHAELAIIATVLRRESASMNILSDSA
YVVNAVQMLATQCYSYLS-ENQGLLREHAIYIGHIRAHSNLPGNMMADHYSR------
>sp|P03364|POL_SMRVH Pol polyprotein OS=Squirrel monkey retrovirus GN=pol PE=3 SV=2
----------SWK-ITDPVWVDQWPLTYEKTLAAIALVQEQLAAGHIEP--TNSPWNTPIFIIKKKSGSWRLLQDLRAVNKVMVPMGALQPGLPSPVAIP
LNYHKIVIDLKDCFFTIPLHPEDRPYFAFSVPQINFQSPMPRYQWKVLPQGMANSPTLCQKFVAAAIAPVRSQWPEAYILHYMDDILLACD-SAEAAKAC
YAHIISCLTSYGLKIAPDKVQVSEPFSYLGFELHHQQVFTPRVCLKTDHLKTLNDFQKLLGDIQWLRPKLPTSALVPLNNILKGDPNPLSVRALTPEAKQ
SLALINKAIQNQSVQQIS-YNLPLVLLLLP-TPHTPTAVFWQPNGSPLLWLHLPASPSKVLLTYPSLLAMLIIKGRYTGRQLFGRDPHIIIPYTQDQLTW
LLQTSWAIALSSPVIQFAKLHQFI--FPKITKCAPIPQATLVFTDGSSN----GIAAYVIDNQ-PISIKSPLSAQLVELYAILQVFTVLAQPFNLYTDSA
YIAQSVPLLETVPTPLFS-KLQQLIRQHPFFIGHLRAHLNLPGNALADAATQ------
>tr|M3WRX6|M3WRX6_FELCA Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
-----------------PVRTPQWPLSSEKLQALEQRIQEQLLAGHMEP--SQSPWNSPVSVIKK-KGKWRLLIDLRNVNAIIKLVGTLHPGLPTPTMTP
KQWLLIIINLKDRFYTIAIHPDDKEKFTFSQYPAQTIRNYETISLDIAPQGMTNSPTMCQYFIGHVGQPVRLAYPQAYIIHYMDDILIATQ-TEEELQRL
YNDTSSHLIAAGLIIAPKNSNHH---PHLGTIVDRSTVKPQTMQIHRDNLNGLNDFQKLLWDINWICPGIPTYQLQNLFNTLEGDPVMDSPRHLSPEAEN
ELQFVEECLQTSFTYRHD-PSLPAILLIFP-TPHSPTGILPQED-RALEWVTLHMKTSCTVTPCLSLIASLIIQGRKRAIQILGFDPAIGLPLASTTFKD
IFPLSLQFAFAD--------IPWV--INRVVCESPIPSAPTYFIDDSSS----GIASIWA------LPCISTSARQVELATLLYFLQSIPGPLNVVSDSA
YVVGLVNPLETALNPLLQ-DLQLEIRMHPLYVTHIHSHSNLPGNQSADLLAT------
>tr|V9P8D9|V9P8D9_9RETR Pol polyprotein (Fragment) OS=Lymphoproliferative disease virus PE=4 SV=1
----------EWH-TDEPVWIEQWPLTAQKLDAVQNIIQDLLKDGRIVP--SRSPWNSPIFVIQKKKSKFRMLHDLRAVNALIKDWGALQPGTPWPGAIP
SGWPVIAMDISDCFFSIPLAERDSERFAFTVPSLNLREPAKRYQWTVLPQGMKNSPYICQQVVAEVIRPIREQFRDAVIIHYMDDILIAAA-EERQAEVI
FETVKTTCQEEGLKINEAKTQRAPEVSYLGWRVMETGIAPLTVQLP-ESVTNLVQLQRLLGIIQWLKPSLRPEQLQVFYDLLKGKARPEEPCDLTEEARR
ELRNIQQKLQASHVSRWR-SDLPITLFVCT-TAAGGIGLIAQQLNQPLYWLSSTRL-TRAWTSASRVLVLLIRQGSQICARYWGQLPDVMIPLTTEEWEL
FSSA-YAIASLVPIWPSLQYLCPV---APPITDTPLVG-RTVFTDASSQ----TAMAVWQEQWKKVTECSPNSVQQLEARAVQLASEAFPEALNVVTDSL
YVARLVLRMAAPG---AL-ALYNSLRTAPLFICHVQAHQSLEGNDAADRAAK------
>tr|Q9HBF9|Q9HBF9_9BETR Gag-pro-pol protein (Fragment) OS=Human mammary tumor virus PE=4 SV=1
----------SWK-SDQPVWLNQWPLKQEKLQALQQLVTEQLQLGHLEE--SNSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPSPVAVP
KGWEIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLCQKCVDKAILTVRDKYQDSYIVHYMDDILLAHP-SRSIVDEI
LTSMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDVVSYQKLQIRTDKLRTLNDFQKLLGNINWIRPKLTTGDLKPLFEILNGDSNPISIRKLTPEACK
ALQLVNERLSIAPVKRLD-LSRPWSLCILK-TEYTPTACLWQN--GVLEWIHLPHIPPKVITPYDIFCTQLIIKGRHRSKELFSKDPDIVVPYTKVQFDL
LLQEKWPISLLGPLLTFTLQTAII--FPHMTSTTPLEKGIVIFTDGSAN----GRSVTYIQRE-PIIKENTNTAQQAEIVAVITAFEEVSQSFNLYTDSK
YVTGLFPGIETATYTEPR-HLQRLIRQEKFYIGHIRGHTGLPGNAYADSLTR------
>tr|Q7M6U5|Q7M6U5_MOUSE Pol protein (Fragment) OS=Mus musculus GN=pol PE=4 SV=1
----------QWR-NDIPVWVDQWSLPKEKIEAASLLVQEQLEAGHLVE--SHSPWNTPIFIIRKKSGKWRLLQDLRKVNETMVLMGTLQPGLPSPVAIP
KGYYKIVIDLKDCFFTIPLHPKDCERFAFSVPSVNFKEPMKRYHWTVLPQGMANSPTLCQRFVAKAIQPVRQQWPNIYIIHFTDDVLMAGK-DPQDLLLC
YGDLQKALADKGLQIASEKIQTQDPYNYLGFRLTDQAVFPQKIVIRRDNLRTLNDFQKLLGDINWLRPKLTTGELKPLFDILKGSSDPTSPRSLTSEGLL
ALQLVEKAIEEQFVTYID-YSLPLHLLIFN-TTHVPTGLLWQK--FPIMWIHSRISPKRNILPYHEAVAQMIITGRRQALTYFGKEPDIVQPYSVSQDTW
LKQHSWLLAQLGRLIKFLNVHDMI--FPKMTSLQPLNNALLIFTDGSSK----GRAGYLISNQ-QVIVETPLSAQLAELTAVLKVFQS-VEAFNIFTDSL
YVAQSVPLLETCGGSLFS-ELQNIIRKNPFYIGHIRSHSGLPGNDRIDRALI------
>tr|D9YZJ1|D9YZJ1_9BETR Pol protein (Fragment) OS=Ovine enzootic nasal tumor virus GN=pol PE=4 SV=1
----------DWK-SEEPVWVDQWPLTQEKLSAAQQLVQEQLRLGHIEP--STSAWNSPIFVIKKKSGKWRLLQDLRKVNETMMHMGALQPGLPTPSAIP
DKSYIIVIDLKDCFYTIPLAPQDCKRFAFSIPSVNFKEPMQRYQWKVLPQGMTNSPTLCQKFVATAIAPVRQRFPQIYLVHYMDDILLAHT-DEHLLYQA
FSILKQHLSLNGLVIADEKIQTHFPYNYLGFSLYPRTYNTQLVKLQTDHLKTLNDFQKLLGDINWIRPKLPTYTLQPLFDILKGDSDPASPRTLSLEGQT
ALQLIEEAIRQQQITYCD-YQRSWGLYILP-TPRAPTGVLYQD--KPLRWIYLSATPTKNLLPYYELVAKIVAKGRHEAIQYFGMEPPICVPYALEQQDW
LFQFSWAIAFANKLLQFASSHAFI--FPKIVRRQPIPNATLIFTDGSSN----GAAALIINHQ-TYYTQTSSSAQVVELFAVHQALLTVPTSFNLFTDSS
YVVGALQTIETVPLNLFT-LIQQVLRQYPCFFGHIRAHSTLPGNHTADVLTK------
>tr|Q6A2B3|Q6A2B3_9RETR Reverse transcriptase/integrase OS=Avian endogenous retrovirus EAV-HP GN=pol PE=4 SV=1
----------RWKPDTRPVWVDQWPLPKEKLDALQTLVARELRLGHIEP--SLSRWNTPVFVIQKKSGAFRLLHDLRAVNSQLIPFGVVQQGAPVLSAVP
EEWEVTAIDLKDCFFSIPLAEQDREAFAFTVPVSNNQRPTQRYQWRVLPQGMACSPTICQMVVGKILGPLHHTSEECIILHYMDDLLLAAP-TLARLQDL
ETCVISLLTKAGFTVSSEKIQRGSGVQFLGYKFDEGTVRPTGV-NITPRIRTLWDVQKLVGALQWIRGGIPPRLMQPFYDQLKG-SDPREPRTFTPDMSE
AWDEIVTSCLHTALSRYN-CKKELEVAVCK-CDSGATGLLGQDLGQPLWWNYSVQP-VHAFTSWLEVLAKLICKCRLSAVRIFGQEPSIYLPRSFR---D
TSPLPILLALVGSIFELARPM---QSLRCRVQASPVDG-PTLFTDASSS----TGQGAWGRCWKSVIFQDVASVQILEVRAVALALRLWPIPCNIVTDSA
FAAKLLLSMGQEG---AM-VLEDSLRTAPVAVMHVRSHSEVPGNAAADRAAG------
>tr|K7ZPD4|K7ZPD4_ALV Polymerase (Fragment) OS=Avian leukosis virus GN=pol PE=4 SV=1
----------KWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEP--SLSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALP
RGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAAS-SYDGLEAA
GEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGL-VAEPRIATLWDVQKLVGSLQWLRPGIPPRLMGPFYEQLRG-SDPNEAREWNLDMKM
AWREIVQLSTTAALERWD-PALPLEGAVAR-CEQGAIGVLGQGLSRPCLWLFSTQP-TKAFTAWLEVLTLLITKLRASAVRTFGKEVDLLLPACFR---E
DLPLPILLALRGSIFDIARPL---HSLKVRVTDHPVPG-PTVFTDASSS----THKGVWRERWEIKEIADLASVQQLEARAVAMALLLWPTPTNVVTDSA
FVAKMLLKMGQEG---AF-ILEDALRSAMAAVLHVRSHSEVPGNDVADSQAT------
>sp|Q9UQG0|POK11_HUMAN Endogenous retrovirus group K member 11 Pol protein OS=Homo sapiens GN=ERVK-11 PE=2 SV=2
----------TWK-TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEP--SFSPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIP
KDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAE-TKDKLIDC
YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKPQKIEIRKDTLKTLNDFQKLLGDINWIRPGIPTYAMSNLFSILRGDSDLNSKRILTPEATK
EIKLVEEKIQSAQINRID-PLAPLQLLIFA-TAHSPTGIIIQNT-DLVEWSFLPHSTVKTFTLYLDQIATLIGQTRLRIIKLCGNDPDIVVPLTKEQVRQ
AFINSWQIGLANKIFQFLKMTTWI--LPKITRREPLENALTVFTDGSSN----GKAAYTG-PK-ERVIKTPQSAQRAELVAVITVLQDFDQPINIISDSA
YVVQATRDVETALNQLFN-LLQQTVRNFPFYITHIRAHTNLPGNEEADLLVS------
>sp|P03361|POL_BLVJ Pol polyprotein OS=Bovine leukemia virus (isolate Japanese BLV-1) GN=pol PE=3 SV=1
--------------------GASIPFKLERLQALQDLVHRSLEAGYISP--WDGPGNNPVFPVRKPNGAWRFVHDLRATNALTKPIPALSPGPPDLTAIP
THPPIICLDLKDAFFQIPVEDRFRFYLSFTLPSPGGLQPHRRFAWRVLPQGFINSPALFERALQEPLRQVSAAFSQSLLVSYMDDILYASP-TEEQRSQC
YQALAARLRDLGFQVASEKTSQPSPVPFLGQMVHEQIVTYQSLTLQISSPISLHQLQAVLGDLQWVSRPTTRRPLQLLYSSLKRHHDPRAIIQLSPEQLQ
GIAELRQALSHNARSRYN-EQEPLLAYVHL-TRAGSTLVLFQKGAFPLAYFQTPLT-DNQASPWGLLLLLGCQYLQTQALSSYAKPILYYHNLPKTSLDN
WIQSSPRVQELLPWKTLITRAEVFLTPQF--SPDPIPAALCLFSDGATG----R-GAYWKDLD-FQAVPA-ESAQKGELAGLLAGLAAAP-PVNIWVDSK
YLYSLLRTLVLGAPSYAL-LYKSLLRHPAIVVGHVRSHSSASHNNYVDQLLP------
>tr|Q9N172|Q9N172_TRIVU Pol polyprotein (Fragment) OS=Trichosurus vulpecula GN=pol PE=4 SV=1
----------TWR-SETPVWIDQWPLPKEKLEAANMLVQQQLTAGHIEP--SNSPWNTPIFVIKKKSGAWRLLHDLRAVNKTMIPMGSLQPGLPAPVAIP
AGFQKIVIDLKDCFFSIPLHPDDSKRFAFTVPVTNCVGPSPRFQWKVLPQGMTNSPTLCQKYVAQTIDPFRLQFPQLYIIHYMDDILIAGP-CEQELLRI
TTLLITALKDRGLYISPDKVQLASPFFFLGFELHSSHIITQKAQIRTNHLHTLNDFQKLLGDINWLRPKITTGDLKPLFDILKGDSNPTSPRVLTKEGEA
ALQKINHAISAQKIGYYN-PQKKLWFLIFS-TSFSPTGLLWQD--LPLYWIHGPATPTKVLPTYPLLTASLLQEGRSLSVKFFGKDPDIVCPYTSSQLSW
LQQNDWAISSVSKLIQFLRDNPVA--FPRITKRDPLENARLVFTDGSSS----GTAAISIDSN-LTSFHTPKSAQLVELAAILWVFEHVPDPMNIYTDSA
YIAHSIPELETVPFSMFL-QIQKLIRAQPFFICHIRAHSDLPGNDTVDAASK------
>tr|L0N080|L0N080_9RETR Pol protein (Fragment) OS=Simian retrovirus Y GN=pol PE=4 SV=1
----------TWK-SDTPVWVDQWPLTYEKLIAAQQLVQEQLEAGHIVE--SNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSPVAIP
LGYFKIIIDLKDCFFTIPLHPDDQKRFAFSLPSINFKEPMKRYQWRVLPQGMANSPTLCQKYVATAIQRIRIAWKQMYIIHYMDDILVAGK-DGQQVLQC
YAQLEKELIKAGLCIASEKVQLQDPYTYLGFQINGPKITNQKAIIRKDKLHTLNDFQKLLGDINWLRPKLTTGELRPLFDILKGDPNPNSPRLLTTEALT
ALQKVETAIAEQFVTHIN-YTQPLTFLIFN-TALTPTGLFWQR--DPIMWVHLSASPKKVLVPYYDAIADLIILGRDNSKKYFGIEPSIIQPYSKSQVDW
LLQNTWPVALASKLIQFCKLHSFI--FPQIISNKPLDDALLVFTDGSST----GVAAYTVRDT-TIKFHTTKSAQLVELQALIAALSAFPQRLNIYTDSA
YLAHSIPMLETVAAELFT-QCQQLIRSLPCYIGHVRAHSGLPGNQVTDLATK------
>sp|P51517|POL_SRV2 Pol polyprotein OS=Simian retrovirus SRV-2 GN=pol PE=3 SV=1
----------TWK-SDEPVWVDQWPLTQEKLAAAQQLVQEQLQAGHIIE--SNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSPVAIP
QGYFKIVIDLKDCFFTIPLQPVDQKRFAFSLPSTNFKQPMKRYQWKVLPQGMANSPTLCQKYVAAAIEPVRKSWAQMYIIHYMDDILIAGK-LGEQVLQC
FAQLKQALTTTGLQIAPEKVQLQDPYTYLGFQINGPKITNQKAVIRRDKLQTLNDFQKLLGDINWLRPHLTTGDLKPLFDILKGDSNPNSPRSLSEAALA
SLQKVETAIAEQFVTQID-YTQPLTFLIFN-TTLTPTGLFWQN--NPVMWVHLPASPKKVLLPYYDAIADLIILGRDNSKKYFGLEPSIIQPYSKSQIHW
LMQNTWPIACASKLIQFCKLHAVV--FPRIISKTPLDNALLVFTDGSST----GIAAYTFEKT-TVRFKTSTSAQLVELQALIAVLSAFPRALNVYTDSA
YLAHSIPLLETVSAKFFL-QCQQLIRSIPFYLGHIRAHSGLPGNHITDLATK------
>sp|P04025|POL_SRV1 Pol polyprotein OS=Simian retrovirus SRV-1 GN=pol PE=3 SV=1
----------TWK-SDEPVWVDQWPLTSEKLAAAQQLVQEQLEAGHITE--SNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSPVAIP
QGYLKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQRMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGK-DGQQVLQC
FDQLKQELTIAGLHIAPEKIQLQDPYTYLGFELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRPKLTTADLKPLFDTLKGDSNPNSHRSLSKEALA
LLDKVETAIAEQFVTHIN-YSLPLMFLIFN-TALTPTGLFWQN--NPIMWVHLPASPKKVLLPYYDAIADLIILGRDHSKKYFGIEPSIIQPYSKSQIDW
LMQNTWPIACASKLIQFCKLHAFI--FPQIISKTPLNNALLVFTDGSST----GMAAYTLADT-TIKFQTNNSAQLVELQALIAVLSAFPQPLNIYTDSA
YLAHSIPLLETVAAKLFL-QCQQLIRSIPFYIGHVRAHSGLPGNQKADLATK------
>tr|E0WCL2|E0WCL2_9BETR Pol protein (Fragment) OS=Simian retrovirus 4 GN=pol PE=4 SV=1
----------IWK-SDTPVWVDQWPLTKEKLTAAQQLVQEQLQAGHIVE--SNSPWNTPIFVIKKKSGKWRLLQDLRAVNATMILMGALQPGLPSPVAIP
QNYLKIIIDLKDCFFTIPLHPNDQKRFAFSLPSTNFKEPMKRYQWKVLPQGMANSPTLCQKFVAMAIQTVRDTWKQIYIIHYMDDILLAGA-DGQQVLQC
FAQLKEKLVIAGLHIAPEKIQLHDPYTYLGFQLNGPKITTQKAVIRKDKLQTLNDYQKLLGDINWLRPKLTTGDLRPLFDILKGDPNPNSPRSLSDEALI
ALDKVETAIAEQFVTHIN-YSQPLILLVFN-TALTPTGLFWQS--NPLMWIHSHASPKRVLLPYYDAIADLIILGRGHSRTYFGIEPSIIQPYSKSQIDW
LMQNTWPIACASKLLQFCRLHTFI--FPKIISKSPLDNALLVFTDGSST----GIAAYTFADS-IIKFQTKSSAQLVELQAFIAVLSAFPQPLNIYTDSA
YLAHSIPLLETVAAQLFL-QCQQLIRSTPIYIGHVRAHSGLPGNQLADLATK------
>tr|A0A077LSH1|A0A077LSH1_CHLSB Pol protein (Fragment) OS=Chlorocebus sabaeus GN=pol PE=4 SV=1
----------TWK-SDEPVWVDQWPLLNDKLSAAQQLVQEQLIAGHIVE--SNSPWNTPIFVIKKKSGKWRLLQDLRAVNITMILMGALQPGLPSPVAIP
QKYFKIIIDLKDCFFTIPLHPADQKRFAFSLPSTNFKQPMKRYQWKVLPQGMANSPTLCQKYVAAAIEPVRKTWTQMYIIHYMDDILIAGE-IGEQVLQC
FAQLKQELTAVGLQIAPEKVQLQDPYTYLGFQINGPKIINQKAVIRRDHLKTLNDFQKLLGDINWLRPKLTTGELKPLFDILKGDSNPKSPRSITKEALI
ALQQVEYAIATQFVTSID-YSQPLIFIIFN-TTITPTGLFWQS--NPIMWVHLPSSPKKVLLPYYDAIADLIILGRENSRKYFGIEPSIIQPYTQSHIHW
LLQNTWPIACASKLIQFCKLHAFV--FPHITSKEPLNDALLIFTDGSST----GLAAYTYNNV-VVKFQTTTSAQLVELQAIIAALSAFPQPLNIYTDSA
YLAHSIPLLETVPANLFL-QCQQLIRTTPFFLGHIRAHSGLPGNATADMATK------
>tr|Q6XNN9|Q6XNN9_9DELA Polymerase (Fragment) OS=Simian T-lymphotropic virus 3 PE=4 SV=1
----------YWIRPSPAPRSFSVPVKPERLQALTDLVSRALEAKHIEP--YQGPGNNPIFPVKKPNGKWRFIHDLRATNSLTRDLASPSPGPPDLTSLP
QDLPLRTIDLTDAFFQIPLPTIFQPYFAFTLPQLNNHGPGTRYSWRVLPQGFKNSPTLFEQQLSHILTPVRKTFPNSLIIQYMDDILLASP-ALSELAAL
TDKVTNALTNEGLPMSPEKTQAPGPIHFLGQVISQDCITYETLSIHVKSIWLLAELQSMLGELQWVSKPVLRSSLHQLYLALRGHRDPRDTIQLTSTQVQ
ALKTIQKALALNCRSRLV-TQLPILALIIL-RPTGTTAVLFQTKQWPLVWLHTPHP-ATSLRPWGQLLANAVITLDRYSLQHYGQVCKFHHSISKQALTY
YLHTSSSVAILLPWRSLLQMPTIFQRPPFTISPVVINHAPCLFSDGSAS----K-AAFWDKIH-QQVLPL-CSAQAGELFGLLAGLQKSKLALNIFLDSK
FLIGHLRRMALGASELHA-QLLPLLQGKTVYVHHVRSHTLLQDNEATDALM-------
>tr|D2E921|D2E921_9DELA Pol protein (Fragment) OS=Simian T-lymphotropic virus 3 GN=pol PE=4 SV=1
----------HWAGSPPAPRSSTISVKPERLQALTDLVSKALEAKYIEP--YQGPGNNPIFPVKKPNGKWRFIHDLRATNCLTKTLTSPSPGPPDLTSLP
QGLPLRTIDLTDAFFQIPLPVAFQPYFAFTLPQPNNHGPGARYSWKVLPQGFKNSPTLFEQQLSHILTPVRQAFPKSIVIQYMDDILLASP-TLEESIVL
AQEITNALAQEGLPMSTEKTQSPGPIHFLGQTISKKYITYKTLTIHVKPNWTLTELQSTLGELQWVSKPTLRSSLHQLYTALRGHHDPRDTIQLTPPQLQ
ALNTLQKALTHNCRSRIV-SNLPILALIML-RPTGTTAVLFQTKQWPLVWLHTPHP-ATSLRLWGQLLANAIITLDRYSLQHYGQVCKFHHNISNQALTH
YLHTSSSVAILLPWKGLLQVPQIFQNPPFTISPVVINHAPCLFSDGSNS----Q-AAFWDKIH-QQVLPL-SSAQAGELFALLAALRECKSSLNIFLDSK
FLVGQLRRLALGACDLHS-QLLPLLYNKTIYVHHVRSHTLLQDNEATDALM-------
>tr|G9BL39|G9BL39_9DELA Pol protein (Fragment) OS=Human T-lymphotropic virus 1 GN=pol PE=4 SV=1
----------PWARPPKAPRNQPVPFKPERLQALQHLVRKALEAGHIEP--YTGPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPDLSSLP
TTLALQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASP-SHEDLLLL
SEATMASLISHGLPVSENKTQQPGTIKFLGQIISPNHLTYDAVTVPIRSRWALPELQALLGEIQWVSKPTLRQPLHSLYCALQRHTDPRDQIYLNPSQVQ
SLVQLRQALSQNCRSRLV-QTLPLLGAIML-TLTGTTTVVFQSKQWPLVWLHAPLP-HTSQCPWGQLLASAVLLLDKYTLQSYGLLCQIHHNISTQTFNQ
FIQTSPSVPILLLWNTFLKTAAPLAMPVFTLSPVIINTAPCLFSDGSTS----R-AAYWDKLS-QRSFPL-KSAQRAELLGLLHGLSSARRCLNIFLDSK
YLYHYLRTLALGTAPFQA-LLPRLLSRKVVYLHHVRSHTNLPDNALTDALL-------
>tr|Q4QY51|Q4QY51_9STL1 Pol protein (Fragment) OS=Simian T-lymphotropic virus 1 GN=pol PE=4 SV=1
----------ARPRFPKTPRNQPVSFKPERLQALQHLVHRALEANHIEP--YFGPGNNPVFPVKKSSGAWRFIHDLRATNSLTTDLASSSPGPPDLSSLP
VTLPLQTIDLKDAFFQIPLPKKFQPYFAFTVPQQCNYGPGNRYAWKVLPQGFKNSPTIFEMQLASILQPIRHTFPHSAIIQYMDDILLASP-TPEDLQRL
SKAVIVALATHGLPVSHEKTQQPGAIKFLGQLISPDHVTYTAVTVPVRSQWTLPELQTLLGEVQWVSKPILRQPLQCLYSTLQGHSDPRDLIHLGPAQVQ
ALRELQQALSHNCRSRLV-TTLPLLGAIML-TPTGTTTVVFQYRQWPLAWLHAPLP-HTSQCPWGQLLASAVLLLDKYTLQSYGLLCQIHHNVSTQTFNH
FIHTSPSVPILLLWTTFLKTAAPLAMPVFTVSPVVLDTAPCLFSDGSAS----Q-AAYWNKIS-QETFTL-TSAQQAELFGLLHGLAKARPCLNIFLDSK
YLYHYLRTLSLGTAPLQA-LLPHLLQHKIIYLHHVRSHTNLPDNAFTDSLL-------
>tr|B8LHM0|B8LHM0_9DELA Polymerase OS=Human T-lymphotropic virus 4 GN=pol PE=4 SV=1
----------HRLRSSRAPRGQPVSFKPERLQALIDLVSKALEAGHIEP--YSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLASPSPGPPDLTSLP
QALPLQTIDLTDAFFQIPLPKRFQPYFAFTIPQPLNHGPGSRYAWTVLPQGFKNSPTLFEQQLASVLGPARKAFPTSVIVQYMDDILLACP-SQHELDQL
ATLTAQLLSSHGLPVSQEKTQRPGKIHFLGQIIHPDHITYETTTIPIKAHWTLTELQTLLGELQWVSKPVLREHLHCLYSALRGLKDPRDTITLRHPHLH
ALHNIQQALHHNCRGRLD-STLPLLGLIFL-SPSGTTSVLFQTNHWPLVWLHAPHP-PTSLCPWGHILACTVLTLDKYALQHYGQLCKFHHNMSTQALHD
FVKNSPSVAILIPWRTLLQLPALLRRPAFSLSPVVIDQAPCLFSDGSPQ----K-AAYWDKLS-QRSVPLANSAQKGELVGLLLGLQAAQPSLNIFLDSK
FLIRYLQSLASGAHRLQA-SLPTLLQGKVVYLHHTRSHTQLPDNEYTDSLI-------
>tr|O09242|O09242_9DELA Pol protein (Fragment) OS=Simian T-lymphotropic virus 2 GN=pol PE=4 SV=1
----------IGLEFPPPPQIDQFPFKPERLQALTDLVSKALEASYIEP--YSGPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLASPSPGPPDLTSLS
TALPVQTIDLADAFFQIPLPKQFQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSPTLFEQQLAAILSPIRKAFPTSTIIQYMDDILLASP-AQGELQQL
SKMTLQALVTHGLPVSQAPREQPGQIRFLGQVISPDHITYETTTIPMKSQWTLAELQTVLGEIQWVSKPILRKHLQCLYSALRGYQDPRAHLLLQKQQLH
ALHAIQ-PLQHNCRSRLN-PALPILGLISL-SSSGTTSVLFQARQWPLVWLHTPHP-PTSLGPWGHLLACTILTLDKYSLQHYGRLCQLEDNMSNTALHD
FVKNSPRVGILIPWKALLHLPALLQRPLFTLSPVVLTTHPVSSPTGLPK----K-AAYWDQLR-HDSITLGNSAQRGELLALLSGLRAAKPSLNIFLDSK
YLIKYLHSLATGAQSLYA-HLPALLHNKVIYLHHIRSHTNLPDNEYTDSLII------
>tr|Q9WS58|Q9WS58_HTLV2 Reverse transcriptase OS=Human T-cell leukemia virus 2 GN=pol PE=4 SV=1
----------HRLRPSPTAAGGPISFKRERLQALNDLVSKALEAGHIEP--YSGPGNNPVFPVKKPNGKWRFIHDLRATNAIATTLTSPSPGPPDLTSLP
TALPLQTIDLTDAFFQIPLPKQFQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLFEQQLAAVLNPMRKMFPTSTIVQYMDDILLASP-TNKELQQL
SQLTLQALTTHGLPISQEKTQRPGQIRFLGQVISPNHITYESTAIPIKSQWTLTELQVILRKIQWVSKPILRRHLQSLYSALHGYRDPRACITLTPQQLH
ALHAIQQALQHNCRGRLD-PTLPLLGLISL-STSGTTSVIFQPKQWPLAWLHTPHP-PTSLCPWGHLLACTIPTLDKFTLQHYGQLCQFHHNMSKQALCD
FLRNSPSVGILIPWKTLLHLPTLLQRPIFTLSPVVLDTAPCLFSDGSPQ----K-AAYWDQLQ-QDITPLVNSAQKGELLALICGLRAAKPSLNIFLDSK
YLIKYLHSLAIGAQTLQA-ALPPLLQGKTIYLHHVRSHTNLPDNEYTDSLI-------
>tr|O56224|O56224_MPMV RT-IN OS=Mason-Pfizer monkey virus GN=gag-pro-pol PE=4 SV=2
--------PITWKSD-EPVWVDQWPLTNDKLAAAQQLVQEQLEAGHITES--SSPWNTPIFVIKKKSGKWRLLQDLRAVNATMVLMGALQPGLPSPVAIP
QGYLKIIIDLKDCFFSIPLHPSDQKRFAFSLPSTNFKEPMQRFQWKVLPQGMANSPTLCQKYVATAIHKVRHAWKQMYIIHYMDDILIAGKDG-QQVLQC
FDQLKQELTAAGLHIAPEKVQLQDPYTYLGFELNGPKITNQKAVIRKDKLQTLNDFQKLLGDINWLRP-YLKLTTGDLFDTLKGDSDPNSHRSLSKEALA
SLEKVETAIAEQF-VTHINYSLPLIFLIFNTALTP-TGLFWQDNP--IMWIHLPASPKKVLLPYYDAIADLIILGRDHSKKYFGIEPSTIQPYSKSQIDW
LMQNTWPCASFVGILDNHYPPNLIQFFPQIISKTPLNNALLVFTDGSSTGM-----AAYTLTDTT-IKFQTNSAQLVELQALIAVLSAFPNPLNIYTDSA
YLAHSIPLLETQISETAKLQCQQLIYNIPFYIGHVRAHSGLPGNQRADLATK------
>tr|Q8AGY0|Q8AGY0_9RETR Gag-Pro-Pol protein OS=Python molurus endogenous retrovirus PE=4 SV=1
--------RLELQSQ-TPVWIDQWPLTVEKLTVLKQLVNEQLDNGHLEPS--LSPYNTPVFVIKKKSGKWRLLHDLRAVNAIIKPMGALQCGLPNPNLIP
QSYDMMIIDLKDCFFSIPLHPKDKHIFAFTVPALNNSQPTSRYQWKVLPQGMLNSPTMCQYFVSQVLQPYRDKYSSFLVYHYMDGILVATPGPKGTVLKT
LPHLQRILQQGGLHIAPDKVQLSSPFHYLGHKVLESHANPCLPNIQLPPAPTLLQLQQYLGSINWIRP-YIGLSTIQLFTALTKGKQPADVIPLQKEQLD
AVKLINQALRTKW-VDRMKDNLPFSLLLLNTLTLP-TGAVVQVTI--LEWIHLSHTPRATLTTKPAQFASLITKGRLRSKALAGVEPSVYVPCSLSTWES
LLAVSLQLADWPGTVSCHPPPDRVQLWQTPMSPFPIHDAVTVFADGSKKSGA----CAWQIDGQWHTKTTPSSAQRAELYASILAFEAFPHSFNLILDSF
YVSQIISSIYQLSEPLLSLSLQHLISKHFFHVAHIRSHQPFPGNSVADAAAA------
>sp|O92956|POL_RSVSB Gag-Pro-Pol polyprotein OS=Rous sarcoma virus (strain Schmidt-Ruppin B) GN=gag-pro-pol PE=1 SV=2
--------PLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPS--LSCWNTPVFVIRKASGSYRLLHDLRAVNAKLVPFGAVQQGAPVLSALP
RGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLVVGQVLEPLRLKHPSLRMLHYMDDLLLAASSHDG-LEAA
GEEVINTLERAGFTISPDKIQREPGVQYLGYKLGSTYVAPVG-LVAEPRIATLWDVQKLVGSLQWLRP-ALGIPPRLFYEQLRG-SDPNEAREWNLDMKM
AWREIVQLSTTAA-LERWDPALPLEGAVVRCETHP-RPCLWLF----------STQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLPACFR---E
DLPLPILLRGFAGKIRSSDTPSFD-ILKVRVTDHP-VPGPTVFTDASSSKGV----VVWREGPRWEIKEIAGSVQQLEARAVAMALLLWPTPTNVVTDSA
FVAKMLLKMGQVPA----FILEDALSQAMAAVLHVRSHSEVPGNDVADSQAT------
>tr|O56220|O56220_MMTV Pr160 OS=Mouse mammary tumor virus GN=gag-pro-pol PE=4 SV=2
--------QISWKSD-QPVWLNQWPLKQEKLQALQQLVTEQLQLGHLEES--NSPWNTPVFVIKKKSGKWRLLQDLRAVNATMHDMGALQPGLPSPVAVP
KGWEIIIIDLQDCFFNIKLHPEDCKRFAFSVPSPNFKRPYQRFQWKVLPQGMKNSPTLCQKFVDKAILTVRDKYQDSYIVHYMDDILLAHPSR-SIVDEI
LTSMIQALNKHGLVVSTEKIQKYDNLKYLGTHIQGDSVSYQKLQIRTDKLRTLNDFQKLLGNINWIRP-FLKLTTGELFEILNGDSNPISTRKLTPEACK
ALQLMNERLSTAR-VKRLDLSQPWSLCILKTEYTP-TACLWQDGV--VEWIHLPHISPKVITPYDIFCTQLIIKGRHRSKELFSKDPDYVVPYTKVQFDL
LLQEKWPLLGFLGEVHFHLPKDLLTFFPHMTSTTPLEKGIVIFTDGSANGR-----SVTYIQGREPIIKENNTAQQAEIV---AVITAFVSPFNLYTDSK
YVTGLFPEIETLS-KIYTKHLQRLIHKEKFYIGHIRGHTGLPGNAYADSLTR------
>tr|K7F1E9|K7F1E9_PELSI Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
------PVKISLIAGESPVRVKQYPLKKATRIGLKPLIEQFKKYGWLVEGS--SPFNTPILGVPKPDVSYRLVQDLRAINKKVLVDHP---MVPNPHTIL
DATVFTVLDLKDAFFSIPLHEESWKLFAFEWEDP-DTHHKTQLLWTVLPQGFVSSPHVFGTALQKDLEDWKGQHPEVALLQYVDDLLIASP-DKQKGKRA
TESLLNVLGEKGYKVSQKKAQIQPKVTFLGYEIEKGVRALSRDRQNMPVPTTPKELRAFLGLTGFCRMWIPDYGGKPLYESLTKEGL--ANWKWTKENQH
AFESLKAALTQPPALMIPDGHKPYRLYVHENK-GIASGVLTQPVGKPVGYYSKVLDLVAKGWPACLRAVAATATIVEEAQKIMGAEGGKFLNPSRQRYEI
FLLSN-------PGLTFKHTTRHDVLIRPDLTDDPLENPEEFFVDGSSSVEGTRHTGCAVVTETVWKEKLPWSAQAAELTALTRALEMGRDRVNIFTDSR
YAFATVHAQKIANGPQIVELLEALRLPREVAVIHVKAHGKKQGNAKADAAAKE-----
>tr|K0IXD4|K0IXD4_FLV Pol polyprotein OS=Feline leukemia virus GN=pol PE=4 SV=1
------PVLIQLKATATPISIRQYPMPHKAYQGIKPHIRRMLDQGILKPCR--SPWNTPLLPVKKPGEDYRPVQDLREVNKRVEDIHP---TVPNPYNLL
SHPWYTVLDLKDAFFCLRLHPESQLLFAFEWRDP-EVGLSGQLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPALVLLQYVDDLLLAAA-TRTECLEG
TKALLKTLGSKGYRASAKKAQILQKVTYLGYSLEDGQRWLTKARLSIPVPENPRQVREFLGTAGYCRLWIPGFAEAPLYPLTRPG-T---LFQWGPDQQL
AFKNIKKALLSSPALGLPDITKPFELFIDESS-GFAKGVLVQKLGRPVAYLSKKLDTVASGWPPCLRMVAAIAILVKDAGKLLGQPPNKWLSNARMHYQA
MLLDA-------ERVHFGPTVHHDHGTRPDLTDQPLPDALTWYTDGSSFICGERKAGAAVTSEVIWATSLPTSAQRAELIALTQALKMAKGKLTVYTDSR
YAFATAHVKEIKNKNEILALLEALFLPKRLSIIHCPGHQKAKGNRLADDTAKK-----
>tr|E2FK51|E2FK51_9GAMR Pol protein OS=Porcine endogenous retrovirus C GN=pol PE=2 SV=1
------PQVIQLKASATPISVRQYPLSREAREEIWPHVQRLIQQGILVPVR--SPWNTPLLPVRKPGNDYRPVQDLREVNKRVQDIHP---MVPNPYNLL
KRNWYTVLDLKNAFFCLRLHPTSQPLFAFEWRDP-GTGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDLLLAGA-TKQDCLEG
TNALLLELSDLGYRASAKKAQIRREVTYLGYSLRDGQRWLTEARVQ-LAPTTK-QVREFLGTAGFCRLWIPGFATAPLYPLTKEK-G---EFSWAPEHQK
AFDAIKKALLSAPALALPDVTKPFTLYVDEHK-GVARGVLTQSLGRPVAYLSKKLDPVASGWPVCLKAIAAVAILVKDADKSLGQPPDRWMTNARMHYQS
LLLT--------ERITFAPPATHDTGVRKDLTDIP-LTELTWFTDGSSYVVGKRMARAAVVTRTIWASSLSTSAQKAELVALTQALRLAEGSINIYTDSR
YAFATAHVREVKNKEKILSLLEALHLPKRLAIIHCPGHQKSRGNQMADRVAKQ-----
>tr|Q83398|Q83398_9GAMR Putative reverse transcriptase OS=Murine leukemia virus GN=pol PE=4 SV=1
------PLIIPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQ--SPWNTPLLPVKKPGNDYRPVQDLREVNKRVEDIHP---TVPNPYNLL
SHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDP-GMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAAT-SELDCQQG
TRALLLTLGNLGYRASAKKAQLQKQVKYLGYLLKEGQRWLTEARMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEAPLYPLTKTG-T---LFNWGPDQQK
AYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLMGQPPDRWLSNARMHYQA
MLLDT-------DRVQFGPVVPHDHGTRPDLTDQPIPDAHTWYTDGSSFLQGQRKAGAAVTTEVIWARALPTSAQRAELIALTQALKMAEGRLNVYTDSR
YAFATAHIREIKNKSEILALLKALFLPKRLSIIHCLGHQKARGNRLADQAARE-----
>tr|Q7ZGS3|Q7ZGS3_9RETR Pol protein OS=Human endogenous retrovirus HCML-ARV PE=4 SV=1
------PVLIEVKPGAQPVRQKQYPVPREALEGIQVPLKCLRTFGMIVPCQ--SPWNTPLLPVPEPKKDYWPGQDLRLVKQATVTLHP---AVPNPYTLL
EDSCFTCLDLKDAFFSIRFAPESQKLFAFQWEDP-ESGVTTQYTWTWLPQGFKNSPTIFGEELARDLQKCPTRDLGCVLLQYVDDLLLGHP-TAVGCAKG
TDALLRHLEDCGYKVSKKKAQIRPQVRYLGFTIRQGERSLGSERCTLPEPKSRKQVRKFLGAAGFCRLWIPNFAVKPLYEVTKWGDR--EPFEWGSQQQQ
AFRELKEKLMSAPALGLPNLTKPFTLYVSERE-KMAVRVLTQTVGRPVAYLSKQLDGVSKGWPPCLRALAATALLVQEAVKLLGQKGHHWLTNARLKYQS
LLCEN-------PRITIEICNEHDYSSRPDLQDQPWAPVWELYMDGGSFIPGERGAGYAVVDTVVEARSLPTSAQKAELIAFIRALELSEGTVNIYTDSR
YPFLTLQVKDIKYQQEILQLLEAVWKPHKVAVMHCRGHQRGLGNSRADARKAA-----
>sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1
------PIIIDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPCR--SPWNTPLLPVKKPGQDYRPVQDLREINKRTVDIHP---TVPNPYNLL
DYSWYTVLDLKDAFFCLPLAPQSQELFAFEWKDP-ERGISGQLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAP-TKKACTQG
TRHLLQELGEKGYRASAKKAQIQTKVTYLGYILSEGKRWLTPGRARIPPPRNPREVREFLGTAGFCRLWIPGFAEAPLYALTKES-T---PFTWQTEHQL
AFEALKKALLSAPALGLPDTSKPFTLFLDERQ-GIAKGVLTQKLGRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLLGQPPDRWITNARLHYQA
LLLDT-------DRVQFGPPVPHDHGTREDLKDQELPDAHTWYTDGSSYLDGTRRAGAAVVHNTIWAQSLPTSAQKAELIALTKALELSKGKANIYTDSR
YAFATAHTKEIKNKAEIIALLKALFLPQEVAIIHCPGHQKAVGNRQADRVARQ-----
>tr|T2FFV7|T2FFV7_9GAMR Polymerase (Fragment) OS=Galidia ERV GN=pol PE=3 SV=1
------PIHVQLMSTAQPIRVRQYPMTLEARRGVRENIRKLRAAGILVPCH--SPWNTPLLPVRKAEGQYRMVQDLREVNKRVETIHP---TVPNPYTLL
DHIWYSVLDLKDAFFCLPLAPGSQPLFAFEWSDP-EEGESGQLTWTRLPQGFKNSPTLFDEALSHDLQSYRTGHPEVTLLQYMDDLIVAAR-SEAECAQA
TRDLLETLGDQGYRVSAKKAQLSQQVTYLGFRLKGGTRTLTESRVQIPSPKTKRQVREFLGTVGYCRLWIPGFAEKPLHAVAGGGAR---PLTWTKTEEE
AFQALKSALLQAPALSLPDLEKPFQLFVAENK-GVAKGVLTQRIGRPVAYLSRKLDPVAAGWPGCLRAIAAAALLVKEASKLFGQPPDRWMTNTRVQYQV
LLLDP-------PRVSFRQTAFHQTTLRPDLTDRPLLDAVTLFTDGSSFVDGXRHAGAAIVDSTIWAEALPTSAQRAELIALTKALLWGEDRVNIYTDSR
YAFATLHVKEIKNAPEILALLSSVWKPKKVAVIHCRGHQKARGNQRADRVAKE-----
>tr|T2FG22|T2FG22_9GAMR Polymerase (Fragment) OS=Echidna ERV GN=pol PE=3 SV=1
------PVHVQLTSTALPIRIRQYPISLEARRSLRGSIRKFKAAGILKPVH--SPWNTPLLPVRKTGSEYRMVQDLREVNKRVETIHP---TVPNPYTLL
DRTWYSVLDLKDAFFCIPLTCQSQLLFAFEWIDI-EEGESGQLTWTRLPQGFKNSPTLFDEALSRDLQGYRFDHPTVTLLQYVDDLLIAAR-SRDECLQA
TRDLLVTLGSMGYRVSGSKAQLQEEVTYLGFRIKDGTRTLAQSRLQIPAPKTKKQVREFLGTVGYCRLWIPSFAEQPLYAATRGADA---PLRWTGTEEE
AFQRLKTALLQPPALALPNLDKPFQLFVDEAK-GVAKGVLMQTLGRPVAYLSRKLDPLAAGWPRCLRAIAAAALLSKEASKLFEQPPDKWLTNARVQYQV
LLLDP-------PRVIFKQTALHHTTTRPDLTDQPLADAATLFTDGSSYVK-AEYAGAAVVNSIVWAEALPTSAQRAELIALTKALEWSRDTVNIYTDSR
YAFATLHVKAIKNASEILALLTAIWLPKRVAVIHCRGHQQALGNRLADKTARE-----
>tr|A0A075WJL6|A0A075WJL6_AVIRE Pol protein OS=Avian reticuloendotheliosis virus PE=4 SV=1
------PIHVQLLSTALPVRVRQYPITLEAKRSLRETIRKFRAAGILRPVH--SPWNTPLLPVRKSGSEYRMVQDLREVNKRVETIHP---TVPNPYTLL
DRIWYSVLDLKDAFFCIPLAPESQLIFAFEWADA-EEGESGQLTWTRLPQGFKNSPTLFDEALNRDLQGFRLDHPFVSLLQYVDDLLIAAD-TQAACLSA
TRDLLMTLAELGYRVSGKKAQLQEEVTYLGFKIHKGSRTLSNSRLQIPVPKTKRQVREFLGTIGYCRLWIPGFAEQPLYAATRGGND---PLVWGEKEEE
AFQSLKLALTQPPALALPSLDKPFQLFVEETG-GAAKGVLTQALGRPVAYLSKRLDPVAAGWPRCLRAIAAAALLTREASKLFGQPPDRWLTNARIQYQV
LLLDP-------PRVRFKQTAIHHTSTRPDLTDQPLAQAATLFTDGSSYIRGKRYTGAAVVDSVIWAEPLPTSAQKAELIALTKALEWSKDSVNIYTDSR
YAFATLHVKAIKNAPEILALLTAVWLPKRVAVMHCKGHQKSTGNRRADEVARE-----
>tr|Q7ZKZ9|Q7ZKZ9_9GAMR Pol protein (Fragment) OS=Recombinant M-MuLV/RaLV retrovirus PE=3 SV=1
------SLIIQLKSTATPSSIKQYPMSWEAYQGIKPHIRRLLDQGILVPCR--SPWNMPLLPVKKPGGDYRPVQDLREVNKRVEDIHP---TVPNPYNLL
THTWYTVLDLKDAIFCLRLSPESQPLFAFEWKDS-EMGLSGQLTWTRLPQGFKNSPMLFDEALHRDLADFRVQHPTLILLQFVDDLLLGAT-SETACHQG
TESLLQTLGRLGYRASARKAQIQTQVTYLGYQLRDGQRWLTPARANIPAPRNGRQLREFLGTAGFCRLWIPGFAEAPLYPLTKQG-V---LFQWGAEQQE
AFDNIKRALLSSSALGLPEITKPFELFVDEKQ-GYAKGVLTQRLGHPVAYLSKKLDPVASGWPPCLRMVAAIAVLTKDAGKLLGQPPGRWLSNSRMHYQA
LLLDA-------EWVQFGPVVQHDHGIRPDLSDRPLQDAHTWYTDGSSYLVGERKAGAAVTDKVIWASALPTSAQRAELIALTQALKMAEGRLNVYTDRH
YAFATAHIKDIKNKTEIQALLAALFLPKRLRIIHCPGHQKARGNRLADVSAPE-----
>tr|S4X2Q9|S4X2Q9_MUSCR Pol protein (Fragment) OS=Mus caroli PE=4 SV=1
------PVVVELKADASPVSVRQYPMSREAKEGIRPHIQRLIEQGILVPCQ--SPWNTPLLPVRKPGNDYRPVQDLREVNKRVQDIHP---TVPNPYNLL
ERTWYTVLDLKDAFFCLRLHPNSQPLFAFEWRDP-EGGHTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRAQNPQISLLQYVDDLLVAAS-TRELCLDG
TEKLLNELGELGYRVSAKKAQLRTEVTYLGYTLREGKRWLTEARMLIPTPTTPRQVREFLGTAGFCRLWIPGFATAPLYPLTKEK-V---PFTWTEEHQK
AFDSIKAALLAAPALALPDLTKSFTLYVDERA-GVARGVLTQTLGRPVAYLSKKLDPVASGWPSCLKAIAAVALLVKDADKLLGQPPDRWTTNARMHYQS
LLLN--------DRVTFAPPAVHRAGTRKDLIDQPWP-GPNWYTDGSSFVVGKRRAGAAVVKKVIWASSLPTSAQKAELLALTQALQMAEGAINIYTDSR
YAFATAHIKDIKNKEEILALLEAIHLPKKVAIIHCPGHQKAQGNQMADIAAKQ-----
>tr|A0A023W5V9|A0A023W5V9_KORV Pol protein OS=Koala retrovirus GN=pol PE=4 SV=1
------PVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPCQ--SPWNTPLLPVKKPGNDYRPVQDLREVNKRVQDIHP---TVPNPYNLL
SHTWYSVLDLKDAFFCLKLHPNSQPLFAFEWRDP-EKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLASFRALNPQVVMLQYVDDLLVAAP-TYRDCKEG
TRRLLQELSKLGYRVSAKKAQLREEVTYLGYLLKGGKRWLTPARMKIPTPTTPRQVREFLGTAGFCRLWIPGFASAPLYPLTREK-V---PFTWTEAHQE
AFGRIKEALLSAPALALPDLTKPFALYVDEKE-GVARGVLTQTLGRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDADKLLGQPPDRWMTNARMHYQS
LLLN--------ERVSFAPPAIHITGTRPDLRDQPLP-GPAWYTDGSSFIMGRRQAGAAIVKRTVWASNLPTSAQKAELIALTQALRLAEGSINIYTDSR
YAFATAHVKDIKNKEEILALLEAIHLPKRVAIIHCPGHQRATGNRKADEAAKQ-----
>tr|O89815|O89815_9GAMR Pol polyprotein (Fragment) OS=Mus dunni endogenous virus GN=pol PE=3 SV=1
------PVVVELKADATPISVRQYPMSKEAKEGIRPHIRRLLDQGILVACQ--SPWNTPLLPVRKPGNDYRPVQDLREVNKRVLDIHP---TVPNPYNLL
ERTWYTVLDLKDAFFCLRLHPKSQLLFAFEWRDP-EGGQTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRAQNPQLTLLQYVDDLLIAAA-SKELCQQG
TERLLTELGNLGYRVSAKKAQIQTEVIYLGYTLRGGKRWLTEARMMIPPPTTPRQVREFLGTAGFCRLWIPGFATAPLYPLTREG-I---PFEWKEEHQR
AFEAIKSSLMTAPALALPDLTKSFVLYVDERA-GIARGVLTQALGRPVAYLSKKLDPVASGWPTCLKAIAAVALLIKDADKLMGQPPDRWMTNARMHYQS
LLLN--------DRVTFAPPAVHRIGTRKDLTDQPWP-GPSWYTDGSSFLIGKRRAGAAVVKKVIWASALPTSAQKAELIALTQALREAEGIINIYTDSR
YAFATAHIKDIKNKEEILALLEAIHAPKKVAIIHCPGHQKAKGNRMADSVAKQ-----
>tr|K7E1Z7|K7E1Z7_MONDO Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1
------PVQIKTK-SSPPPSIPQYPLSKEAIEGITPVINSLIEQGIIIPCK--SEYNTPILPIKKPKHIYRFVQDLRAVNNHVIKRHS---VVSNIHTII
TATYFTVVDLCSAFFSIPIHENSRHIFAFTWKG-------SQYTWCRLPQGYVESPSLFEQILSQDTDNIT-F-KNSKLIKYVDDLLLAST-DAETCQED
SKHLLLELHKRGHKISKDKVQWLQKVEYLGFILTAGARYISPKRQKLSAPTTKKQLRAILGATGFCRQWIPCYGEKPLIALTKDSVP--EPLKLEPEHLS
ALTDLKKAIMSAPALGIPDYNKPFTLYVHERR-GVASGVLTQTLGRPIAYYSAQLDPVAAGAPPCLRGVAATALLVTKTVDLLGCHRTQAFSDQRIRYEI
TLLNS-------ENITLKRCSLHNEKPRDNLLDTPLDNALILFTDGSSFMDGIRYTGAAVVFATEWSASLPISAQGAELIALKQACIIAKDKATIYTDSR
YAFGICHSKSIANAEIINEVLSALKLPKALAVVHCSAHTGSRGNDRADAAAKL-----
>tr|K7G275|K7G275_PELSI Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
--------IVSVT-GPDPRPIRQYKFPVEAQKGIDDTIQALLTQGIIVKCE--SPCNSPIWPVRKADKSWRLTVDYRELNKVTPKMTP---VVAKYPEII
GARWFSVIDISNAFFSIPLHPDSWYKFAFTYLH-------QQFTFTRVPQGFHNAPTICHRAVTNLWKNCK---YAKHILSYVDDILIATV-DREEHLKV
LEEVLDTLGKAGFLINSSKAQLKTSVTYLGVELGKDGRKPDQERASLPAPTDVHTLRMFLGLLGFSRDFIENFGLKPLYKLLKKS----QPWQWGTVQQE
AFMQLKQSLMQAPALAYPDPNKEFHLQLSTGK-EAIGAILMQEKGKPVAYGSRTLSEVEQQYTACEKEVLALVWAIQHWQYLGMAGRAGRVSHPRIQWTL
ALMSH-------PI-RVEPSKDHEFSLMEKYEAIKEHTPGMWVVDGSCLRNGKLSAGAAALKTNKEVLRSITSAQAAEIVAIILALENSDNDMTICTDSE
WVLRALIDKPVAHAVLLNHAWNAKQRSRKTYLFKVKAHRKSEINNIVDQLAKK-----
>tr|Q9WHJ2|Q9WHJ2_9RETR Pol polyprotein (Fragment) OS=Walleye epidermal hyperplasia virus 2 GN=gag-pol PE=4 SV=1
------PIKIEVL-PLPCPRIRQYPLPKEKVNGLRPMIESLLAQGVLAECH--SSCNTPIFPIQKPGQEYRMIHDLRAINEIVAPLTA---VVASPTTVL
DMKWFTVIDLSNAFFSVPVHPDSQYLFAFTFEG-------RQYTWTVLPQGFIHSPTLFSQALFSSLSKIK-DSLTSEVCIYMDDVLIAST-TKDINIKD
TVTLLHHLADEGHKVSQKKLQLKTEVIYLGQLLSDRGREILPDRSQFSSPTTVRQVRAFLGLAGYCRHWIPDYSEKYLEELLKKEVE--EPFSLTEKQTE
AFQKLKQSLITAPVLAIPDYKKDFELYTSHTE-HVAIAVLSQKQGRPIAYLSAKLDAIERGLPPCLRACASIHKNLTQADSFLGRDRSQLVTASRFKWEA
DLLR--------PELTFVTCTPHDSRPRPDLSDVPLPHPLILFTDGSYSKEGGAVVEYVPSDTFKTVSACSTSAQTAELCALTSACLHAKSSVNIYTDSR
YAFGVLHDTPIKNHNEIQSLLEAVMMPEQISVMKCPAHTKIRGNAAADEAAKK-----
>tr|K7E164|K7E164_MONDO Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1
------PIQVQLDPSKPLPRVPQYPLSREATEGIRPLIDSYLEAGILIKCT--SPCNSPILGVRKPGRGWRLVQDLRAVNACVIPRAP---VVPNPHNLL
SAKIFTVVDLCSAYFSVPLHADSQFLFAFTWEG-------IQLCWTVLPQGYTESATYFSQVLKADLAGLK-FPFGSTLLQYVDDLLLCSP-DAQSSRED
SIVLLKSLAQKGHKVSKEKMQFSSQVKFLGHLISAEGRSLDPARLNFPRPKTKRQLRGFMGLAGYCRLWVPSFSLKPLFDLLKASSP--EPLIWNEAAKI
AFMDLKSALSSSPALGRPNYSLPFHLFLLERN-GISLGVLSQKHGRPLGYYSKSLDSVARGLPSCLRAVVAASDLLELVEEVLESHHTQHFSTSRLKLEA
SLLAK-------SNITISRCKGHDLSPREDLQEKELENPFSWYTDGSCLREGILVARYAITAEVIEAGHLPTSAQQAELEAVTRACELAKGRVNIYTDSR
YAFGVAHDTPIKNGAQVRRLLEALLLPKAIAIIKIPGHSRAKGNALADQYAKE-----
>tr|H2RXL2|H2RXL2_TAKRU Uncharacterized protein (Fragment) OS=Takifugu rubripes PE=4 SV=1
------PRVVTPK-STHRPRRAQYPLRKEAIEGIQPVFDSLLAAGVIVPCPN-SPVNSPSPP----PEEWRFVQDLTAVNAAVQSRAP---LVPNYT-IL
NATWFSVIDLSNAFFSVPVHPDSQYWFAFQFRG-------RGYTFTRMPQGYCESPTIYNQCLSDSLSSLT-LQDGSALLQYVDDLLLCAP-TRTQCVQD
TVTLLTHLAKEGHKVSRTKMQYQQIVTFLGHKISRDVKALSDKHQRAPQPTTVKELLSFIGLQGFCPKLLQSGKARPVTLPPNGG-----KNSMDPEALA
AFTDLKLTLQTPPTLGIPDSERPFTQTVDERQ-GCMTSVLLQEHGRPVAYFSCKLDPVAADLPRCLCAVAAAEKAVVASRDLGYSQHTSHLSAARYRYHT
HLLGL-------PNVTIKRCNPHDCSPRPDLSDQPVLNLLLLFVDGSASRAGRCQAGYAICHGVLESASLPYSA-AAELVALTRACHFTTKSVTIYTDSR
YAFGVVHDSPILNHQLVAALLEAIILPSQVSVCKCAAHANSAGNTRADAAAKA-----
>tr|Q9WHI7|Q9WHI7_9RETR Pol polyprotein (Fragment) OS=Walleye epidermal hyperplasia virus 1 GN=gag-pol PE=4 SV=1
------PIHIEVL-PVPCPSIRQYPLPKEKVEGLRPMIHSLLAQGVLTECH--SSCNTPIFPIKKPGEEYRMIHDLRAINEIVAPLTA---VVASPTTVL
DMTCFTVIDLSNAFFSVPIHPDSQYLFAFTFEG-------RQYTWTVLPQGFIHSPTLFSQALFSSLSKIK-DSLTSEICIYMDDVLIASR-DEETNYKD
TATMLHHLADEGHKVSKKKLQLKSEVVYLGQLISKAGRDILPERSQFAAPTTVRQVRAFLGLAGYCRHWIADYSEKHLEELLKKEVI--EPFTLTGEQLR
AFEQLKSTLLSAPVLAIPDYRKDFELYTSHTD-HVAVAVLAQKQARPIAFLSAKLDAIEQGLPPCLRACASIHKNLTQADSFLGRDRSQLVTASRFKWEA
DLLR--------PELTFVTCTPHDSRPRSDLSDVPLEKPLILFTDGSYSKEGCAVVQYAPEDTFLTVAACTTSAQTAELAAITLACQYAEDSVNIYTDSR
YAFGVLHDTPIKNHEMIQKLLEAVQLPSKISLMKCPAHTKIRGNAAADEAAKK-----
>tr|A0A0Q4AE31|A0A0Q4AE31_ALLMI Uncharacterized protein OS=Alligator mississippiensis GN=Y1Q_028574 PE=4 SV=1
------SIRIKVK-PGPPPSVPQYPIPQEAVKGLQPLIDSYLQQGILRECA--SPCNTPILPVKKPKPVYHFVQDLRAINNYVVPRHP---VVPNPATII
TATYFIVTDLCAAFFSIPVHKDSQYLFAFTLGN-------RQLCWTRLPQGYVESPTLFSQILHKDLPTIA-LGPNSALIQYVDDLLLACP-SEQQCKRD
TLTLLQGLAARSHKVSPTKLQYLSEVEYLGYIIGPGVRKLSPKRQDLPIPKNKRQVRASLGMVGFCRQWIPAYGERPLVEAMIKEAP--EVIVWTPTLNK
AFHELKHSLMVTPALGLPDYQKPFTLFTHENR-GVASGVVSQPWGRPIAYYSAQLDPVARAAVPCLRAVAAAAVLVQKAQDLLGHHNTQHFSNQRLRYEV
LLLAA-------ENVQFQQCTHHDEKPHSDLLDIPLSNPYVLFTDGSSFIEGIRHTGYAVVHWVWEVQPLPTSAQATELVALRCACELATARVTIYTDSK
YAFGICHAHVISNATEVQELLKAILLPAEIAVIHCPGHSRAKGNHLADAATRA-----
>tr|H2UGN9|H2UGN9_TAKRU Uncharacterized protein (Fragment) OS=Takifugu rubripes PE=4 SV=1
------PVVITQK-TSYFPRTCRNPLNYKKYKDIAPFFESLRKAGVIIPCRN-SQVCSPLRPVRKTSTEWRLVLDLRAVNAAVQPRPS---NVPNSDAVV
SATFFSVVDLSNASFSVPVHPDSQFWFAFYFGS-------HCYTFTRLCQGYCETSTIYNEALRRSLEPLA-LTEGTALLQYIDDLMVCSP-NREQCEAD
TVKLLKHLAAEGHKACLSKLQFQEEVTYLGYIITAEGRTLSSKRQNCPKPHFIREMRSFLGRCSSCRTFIPNHAVAPLNALLQGEGVKHDKVTWTSEAEE
AFEALKLALQTPATLRLPDPSRPFTQVADETD-GCMTSVLLQEHQTPIAYFSAKLDPFAAGFPRCLRAAVVAEKAAMASRETGRSQRRFHIPANFRRYKL
DFADM-------PGVTVKRCTEHNFPPRPNLKKTPLTNALVLFVDGSASRLGQNNVGFAVVQKPLAWASLPCSAPAAALIALTEACKLAEGKVTIYTGSR
YAFGVVHDEPFFHHDKVADLLDAILLPESVAVCLFQAHTNPAGNERARAAAAD-----
>tr|H2RXC2|H2RXC2_TAKRU Uncharacterized protein (Fragment) OS=Takifugu rubripes PE=4 SV=1
------PVKIIPK-SDYRPFQRQYPLKTDAQEGIVLIFNSLLKAGVIRECPE-SPVNTPLFPVRKAPTGWRMVQHLQAVNTAVVPRSP---LVADPHTLL
EHQWYTVIDVSNAFFSVPVHPDSQFWFAFTFQG-------RRYTWTRLPQGYCESPTIFSQVMMSSLAKFK-PPCGSQILVYVDDILMASK-TEGDCWSD
TLALLHWLASQGHKFSKSKLQLKQEVVYLGHVLTRNGRAILKSRLDAPKPKTKKQMMSFLGLVNFCRSWILDYAKTPLQALMYDNPLATDALIWTPEAEE
AFH-TKQALVGAGMLKLPDYQKPFEQVVDCKG-DFMTSVLLQKHGQPVAYYSHKLDPIACALPPCVKAVVAASEAVKASAGVLYHSKIAFLSSACHSCMA
VLLSQ-------PNLTIRRCTQHN--TKPDLSDVALTTGQTLFVDGSSRKDGRTRTAYAVVTEVVEAKSLPYSAQAAELVALTRACELSKGDVTIYTDSQ
YAFSTLFVKPVMHTELLKKLLAAVQQPRKIAVCKCTAHTNSQGNAFADKAAKA-----
>tr|Q8Q6U4|Q8Q6U4_9GAMR Pol protein OS=Porcine endogenous retrovirus GN=pol PE=4 SV=1
------PQVIQLKPSLAPVPVRQSPFSKEAREGIRPHVQRLIQQGIIVPVQ--SPWNTPLLPVRKPGNDYRPVQDFERGQKRVQDIHP---TVPNPYNLL
QRSWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDP-GAGRTGQLTWTRLPQGFKNFPTIFDQALHRDLANFRIQHPQVTLLQYVDDLVLAAA-TKQDCLQR
PKGLLVELSDLGDRAFGYKAHIPTEVTYLGYRLRGRHRWLTEAPVQ-PGPTPK-QVREFLGTVGFCRLWIPGFATAPLYPLPKEK-G---EFSWALQHQK
AFDAIKKALLSAPALALPDVTK--TLYVDERK-GVARGVLTQTLGRPVAYLSKKLDPVASGWPICLKAIAAVAILVKDADKLLGQPPDRWMTNARMHYQS
LLLT--------ERVTFAPPATHDTGVRKDLTDIP-LTEVTWFTDGSSYLVGNKMAGAAVVTPTIWGTNLPTSSQKGELIGLMQAFRLGQGSINIYTDSR
YAFATAHVREIKNKEEILSLLEALHLPKRLAIIHCPGHQKSRGNQMADRVAKQ-----
>tr|G9I7G9|G9I7G9_ODOHE Pol polyprotein (Fragment) OS=Odocoileus hemionus GN=pol PE=4 SV=1
------PIVIELKSEAVPVRVKQYPMSQEARRGITPHIRRLMDAGILRRCQ--SPWNTPLLPVKKPGTDYRPVQDLREVNKRVSDIHP---TVPNPYTLL
EYTWYTVLDLKDAFFSLPLAAQSQEIFAFEWTEG-EGQPVVQLTWTRLPQGFKNSPTLFNEALSEDLYEYRTRHPEVILLQYVDDLMLAGT-TEEACSRA
TGDLLQTLGTLGYRASAKKAQIRQEVTYLGYKIRQGQRWLTQAMLQIPEPKTPRQVREFLGTVGYCRLWIMGFAERPLYEGSRET-P---NWTWTEPMKQ
AFQTLRRALLEAPALALPNPDKPFQLFIDEKQ-GIGKGVLTQQWGRPVAYLSKRLDPVAAGWPPCLRIIAATALLVRDADKLYGQPPGKWISNARLHYQA
LLLDA-------PRVRFQTPCLHELAARKDLTDVPLSNSLVWFTDGSSYVKGQRKSGAAIVGQTIWAETLPTSAQKAELLALIQALERAKGRVTIFTDSR
YAFSTVHIKEVKNLPEIRRLLEAVQLPRAVAIVHVPGHQKARGNRAADAAARR-----
>tr|Q6GV78|Q6GV78_OIKDI Pol protein OS=Oikopleura dioica GN=pol PE=4 SV=1
------MVRIPTI-AGLTKSQRERPIPKHQHAEVKAQIDNMAKDGIIEPCPD-GGFHSPLVIVRKKTGGLRICSDFKSLNQCLDETTW---PLPQMDHLF
GHRIFTSLDVSKAYWNLLIDPRDRHKTNFTFDN-------KCWMYVRLPFGLKFSGDAFCRSISSMLDRVS---LKSNFCNYVDDVLAYSS-DCETHVKV
LQQIFSACRHFGARLGAKKCTFQASTAFMGRIISAEGISIPPENLALKPPTTRKQVQSLIGNFCWLKSWVSANLGQPIAENCFSHVMSSRKFIWTEEADQ
ASQRAKKMLASPKVFALPDFKEPFILLSDASE-LAAGSVLMQNIDRLIAVSSKTFSETERKWSATERECYSLLIGCEKFEYYKGPDK-RYLANSKLRWQT
RLAEF-------K---FTVQYSHV----ADMLSRPFDRITLPTADDRCAGSDERLKVYVPS-------ICP--------EKFKRSMLLEKD---------
--------NPKIPILEMREIEQQAEDP---LICSIR---------------KL-----
>tr|A0A0F8D1Z5|A0A0F8D1Z5_LARCR Gag-Pol polyprotein OS=Larimichthys crocea GN=EH28_09169 PE=4 SV=1
------PISFSVN-TNTPLWIRQYPHKPQAETGIKDTIQGLLRNGVLEPSQ--SDWNTPILPVEKKGGKYRMAHDLRAINNILTTPTV---PVPNPYVAL
SQSWFTCIDLANAFFCLPLAKECRDIFSFTFQG-------QQLRYTRLPQGFALSPGLFNQVLKQALTDCS-LPDGISLIQYVDDLLVAAP-TATACLIA
TRSVLQHLADKGFKVSKAKLQVRKQVSFLGRMVSQKGVSMSPDHLHHPKPVKVKDMLSFLGLTGYSRNYVANYTGQSLRDLVRQQGMRNAKLDWTQHAET
AFITLKQALATAAELATPDYHLPFHLDVSVTE-NCVNGVLFQRKGIILMYISVMLDSMEKRHPDCTQHAAGIAKLIQKTAHIMGHET-FTLTTLRQRL-S
KILEA-------PNISFTHEGLHQEKVRADLQATPIEGARDLFTDGCCYREDGLRAAYAVVRVTIKAEKLEQSAQRTEVVAVIEALRLGEGEVNIYTDSA
YAAGAVHVKPIRHETEMKELAEALLLPKKVAVIKCKGHNITQGNNAADQAAKQ-----
>tr|I3KZD5|I3KZD5_ORENI Uncharacterized protein OS=Oreochromis niloticus GN=LOC102082567 PE=4 SV=1
------PVTFELK-DNTPIWRSQYRHSPEAENGIAETISGLLQVGVLEPSS--SAWNTPILPVEKSGGKYRMAHDLRAINAVLKTPTV---PVPNPYTAL
DQRWFTCIDLANAFFCLPLHPSLRDIFSFTYRG-------QQLRYTRLPQGFALSPGIFNQVLKNALSQCV-LPEGCTLIQYVDDLLIAAT-TADACFQA
TMTVLRQLAKTGFKVSRDKLQLRTEVTFLGRGVAMQTVGMLASQMSHPQPCTVKEMLSFLGLTGYSRHYIPDYVGKPLRDLVKEHGMRTANLNWTTEAEM
RFIELKQALSRAADLAIPDYNSDFFVDVSETN-GVVNGVLFQKKGRVLMYISISLDNMEKRHPTCTQHAAGVAKIIQKVAHVKGHQV-FTMTPLRQRL-T
KILES-------PNLTFTHEGPHDEKVRSDLRAEPVNEADDCFTDGCCFRPEGLKTGYAVVVHVEKSGTLEQSAQRAELIAVIEALRLGKGRVNIYTDSA
YVFGAAHVKPIKHQEEMRQLEDALKEPLEVAIIKCKGHDDAKGNRAADEEAKR-----
>sp|P63135|POK7_HUMAN Endogenous retrovirus group K member 7 Pol protein OS=Homo sapiens GN=ERVK-7 PE=3 SV=1
-------------------WVNQWPLPKQKLEALHLLANEQLEKGHIEP--SFSPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQPMGPLQPGLPSPAMIP
KDWPLIIIDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIHYIDDILCAAETRDKLIDC-
YTFLQAEVANAGLAIASDKIQTSTPFHYLGMQIENRKIKQQKIEIRKDTLKTLNDFQKLLGDINWIRPGIPTYAMSNLFSILRGDSDLNSKRILTPEATK
EIKLVEEKIQSAQ-INRIDPLAPLQLLIFAT-AHSPTGIIIQNTD-LVEWSF-------LPHSTVKTFTLYLDQIALRIIKLCGNDPKIVVPLTKEQVRQ
AFINSWQIANFYPKTKIFQFLKLTTWILPITRREPLENALTVFTDGSS----NGKAAYTGPKER-VIKTPYQSAQRAELVAVITVLQDFDQPINIISDSA
YVVQATRDVETSMDDQLNQLFQQTVRKFPFYITHIRAHTNLPGNEQADLLVSSALI--
>tr|K7DYR3|K7DYR3_MONDO Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1
--KSAVPVQIKTK-SSPPPSIPQYPLSKEAIEGITPVINSLIEQGIIIP--CKSEYNTPILPIKKPGKIYRFVQDLRAVNNHVIKRHSVVSNIHTIISIS
TATYFTVVDLCSAFFSIPIHENSRHIFAFTWK-------GSQYTWCRLPQGYVESPSLFEQILSQDTDNITFK--NSKLIKYVDDLLLAST-DAETCQED
SKHLLLELHKRGHKISKDKVQWLQKVEYLGFILTAGARYISPKRIKLSAPTTKKQLRAILGATGFCRQWIPCYGTKPLIALTKDSV--PEPLKLEPEHLS
ALTDLKKAIMSAPALGIPDYNKPFTLYVH-ERRGVASGVLTQTLGPPIAYYSGQLDPVAAGAPPCLRGVAATALLVTKTVDLVLGCPTIMCPHEIEQAFS
DQRITYE-ITLLENITLLHNCETLKPRDN-LLDTPLDNALILFPDGSSRDGIRGAAVVSEFATEWSASLPSISAQGAELIALKQACIIAKDKATIYTDSR
YAFGICAGKSIANAEIINEVLSALKLPKALAVVHCSAHTGSRGNDRADAAAKLA----
>tr|F9W4N0|F9W4N0_TRYCI WGS project CAEQ00000000 data, annotated contig 1205 OS=Trypanosoma congolense (strain IL3000) GN=TCIL3000_0_30380 PE=4 SV=1
--KQVPPVVVELKADATPISVRQYPMSKEAREGIRPHIQRLLDQGVLVA--CQSPWNTPLLLVRKPGTDYRPVQDLREVNKRVLDIHPTVPNPYNLLSLP
ERTWYTVLDLKDAFFCLRLHPKSQLLFAFEWRDPE-GGQTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRARNPQLTLLQYVDDLLVTAA-SKELCHQG
TERLLTELSDLGYRVLAKKAQIQTEVTYLGYTLRGGKRWLTEARKMIPSPTTPRQVCEFLGTAGFCRLWIPGFAAAPLYPLTKEGV----PFEWKEEHQR
AFEAIKSSLMTAPALALPDLTKPFVLYVD-ERAGVARGVLTQALGPPVAYLSKKLDPVASGWPTCLKAIEAVALLIKDADKLTMGQQTVVAPHALERWMT
NARMTYQ-SLLLERVTFVHQCTDIGTRRD-LTDQPWPGAPSWYTDGSSIEGKRGAVVVDEKKVIWASALPETSAQKAELIALIQALREAKGIFNSYTDSR
YAFATAAGKDIKNKEEILALLEAIHAPKKVAIIHCPGHQRAKGNRMADSVAKQV----
>tr|M3X5X4|M3X5X4_FELCA Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
-----DPSPGRAQARRESGKDQTIPHVSGGLEGIQPHIRRLRSLGVLVP--CQSVWNTPLLLVKKPHTDYRPVQDLREVNKRVADIHPTVPNPYTLLSLP
SRVWYTVLDLKDAFFNLPLAPQSQPLFAFKWHDPE-EGYSGQLTWTRLPQGFKNSPTIFDEALHEDLGEYRREHPGLTLLQYVDDILIAAN-TAKDCERG
TQDLLATLGALGYRASAKKAQIRERVSYLGYILEGGQRRLSEARKKIPTPTSRREVREFLGSAGYCRLWVPGFAARPLYEATKEGK----TFKWAEKEET
AFNQLKRALLSAPALGLPDITKPFHLFVD-EHKGIAKGVLTQALGPPVAYLSKKLDPVAAGWPPCLRIIAATALLVKDADKLTLGQEWITTPHAIERWMS
NTRMTYQ-SLLLPQVWFLHDCAGIGFRTD-LTDQPLPDAATWFTDGSSRDGHRGAAVVTKTDTVWAEALPSTSAQRAELIALTKALMLGAGRLNIYTDSH
YAFATAEGQTIKNKQEILNLLTALWLPAKLAIIHCQGHQKARGNRKADQAAKAV----
>tr|O73505|O73505_9GAMR Pol protein OS=Porcine endogenous retrovirus GN=pol PE=4 SV=1
--KQVPPQVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQGILVP--VQSPWNTPLLPVRKPGTDYRPVQDLREVNKRVQDIHPTVPNPYNLLALP
ERNWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPG-TGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDLLLAGA-TKQDCLEG
TKALLLELSDLGYRASAKKAQIRREVTYLGYSLRGGQRWLTEARKQIPAPTTAKQVREFLGTAGFCRLWIPGFAAAPLYPLTKEKG----EFSWAPEHQK
AFDAIKKALLSAPALALPDVTKPFTLYVD-ERKGVARGVLTQTLGPPVAYLSKKLDPVASGWPVCLKAIAAVAILVKDADKLTLGQNTVIAPHALERWMT
NARMTYQ-SLLLERVTFTHDCHQLGVRKD-LTDIPLTGELTWFTDGSSVEGKRGAAVVDGTHTIWASSLPETSAQKAELMALTQALRLAEGSINIYTDSR
YAFATAAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQKSRGNQMADRVAKQA----
>tr|K7E0N5|K7E0N5_MONDO Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1
--LSAPPIQVQLDPSKPLPRVPQYPLSREATEGIRPLIDSYLEAGILIK--CTSPCNSPILGVRKPGGGWRLVQDLRAVNACVIPRAPVVPNPHNLLQIH
SAKIFTVVDLCSAYFSVPLHADSQFLFAFTWE-------GIQLCWTVLPQGYTESATYFSQVLKADLAGLKFPF-GSTLLQYVDDLLLCSP-DAQSSRED
SIVLLKSLAQKGHKVSKEKMQFSSQVKFLGHLISAEGRSLDPARVNFPRPKTKRQLRGFMGLAGYCRLWVPSFSAKPLFDLLKASS--PEPLIWNEAAKI
AFMDLKSALSSSPALGRPNYSLPFHLFLL-ERNGISLGVLSQKHGDPLGYYSKSLDSVARGLPSCLRAVVAASDLLELVEEVTLESPTLHVPHAIEQHFS
TSRLALE-ASLLSNITIGHDCVNISPRED-LQENELENPFSWYTDGSCNEGILRYAITTTAEVIEAGHLPSFSAQQAELEAVTRACELAKGRVNIYTDSR
YAFGVASGTPIKNGAQVRRLLEALLLPKAIAIIKIPGHSRAKGNALADQYAKEA----
>tr|W5PJE1|W5PJE1_SHEEP Uncharacterized protein OS=Ovis aries PE=4 SV=1
--KQRPPIIVELKASASPVRVRQYPMSQEARQGITPHIQRLIDAGVLKR--CRSPWNTPLLPVKKPGGDFRPVQDLREVNKRVNDIHPMVPNPYTLLNLP
NYIWYTVLDLKDAFFSLPLAPASQEIFAFEWQEDG-GQTPVQLTWTRLPQGFKNSPTLFNEALDEDLREYRVEHPTIVLLQYVDDLMLAAA-TEKECQEA
TGDLLQTLGTLGYRASAKKAQIKQEVTYLGYKIKQGQRWLTQAMKQIPEPANPRQVREFLGTVGYCRLWILGFAARPLYEGTKENK----DWKWTEPMKE
AFQELRRALLEAPALALPDPSKPFQLFVD-EKRGIEKGVLTQRWGPPVAYLSKRLDPVAAGWPPCLRIIAATALLVHDADKLTYGQRLVYTPHAIEKWIS
NARLTYQ-ALLLPRIHFLHDCDEIAMRKD-LTDTPLDNSLKWFTDGSSKDGQRGAAVVDDGQTIWAEALPPTSAQKAELIALIQALERAKGRITIFTDSR
YAFGTVEGKEIKNLPEIRRLLEAVQMPRAVSIVHVPGHQKARGNRAADLAARKV----
>tr|H6WSQ3|H6WSQ3_9GAMR Pol protein (Fragment) OS=Rhinolophus ferrumequinum retrovirus PE=3 SV=1
--ARRAPVVVELKASAQPIRIRQYPMSAEARKGIAPHINRLLEAGILKP--CHSAWNTPLLPVKKPGGDYRPVQDLREVNKRVEDIHPTVPNPYTLLHLP
SHVWYTTLDLKDAFFSIALAPSSQHIFAFEWNNGN-TGTPGQLTWTRLPQGFKNSPTLFNEALNQDLDSFRQSHNSVTLLQYVDDLLLAAP-SEAECRQA
TGDLLQELGQLGYRASAKKAQIRQTVTYLGYKLKEGTRWLTEAMKRLPVPTSAREVREFLGTTGYCRLWILGYAAKPLYEATKDKV----PWAWGSDQQK
AYDELKVALLRAPALALPDPLKPFTLFVD-ERRGIAKGVLMQRLGPPVAYLSKKLDPVAAGWPPCLRIIAAVALMVKDADKLTFGQHKVVTPHAIERWMT
NARLTYQ-GLLLPRIIFLHDCQEIQVRPD-LQDTALPNSLVWYTDGSSIDGVRGAAVVDQGNIIWSASLSPTSAQKAELIALAEALERAEGRVTVYTDSR
YAFGTVEGKALRNLPEVRRLLMAVQMPRAVAVVHIPGHQSAEGNRRADEAAKTA----
>tr|I3KZM9|I3KZM9_ORENI Uncharacterized protein OS=Oreochromis niloticus PE=4 SV=1
----------------------------------------MERAGILVKT-DKVTCNTPIFPVKKASTKYRLVHDLRAINEVTEQIPPVVANPHTILQVP
KEQWFSVIDLSNAFFSVPLHPESQNLFGFTFN-------GQKYTYTRLPQGFQNSPTLYAEALKKSMSLCTLPAPGQ-FLLYVDDILITGN-TQNDCKAN
TMAVLHHLAEHGHKVSQHKLQLSPKVTYLGHTLTGEGKKLLDSRKNAPKPLTKQQMMSFLGLCNFSRSWIPEFAVEPLQSMIYGRNLLKDKIQWTPAAEE
AFSNLKLALQTNIVLALPDYEKPFYLHVD-GGAGHMKAVLTQAFGEPLAFYSCKLDSVASGLPTCVQACAAAAEAVKKSADIVLGHTIIKVPHAVTSYLT
HARQLYV-GILLSHISIPHCCMTKKPRAD-IYSTPQAGFIDIFVDGSANSGRNGYAVTTADRVIEAKPLTSHSAQSAELTAVIRACELHAGDINIYTDSQ
YVFSAVTGNPVKHGNLLKALLQVITLPKKLALCKCAAHQKTEGNNFADQAAKLA----
>tr|O36581|O36581_9RETR Polyprotein (Fragment) OS=Multiple sclerosis associated retrovirus GN=pol PE=2 SV=1
--KNARPVQVKLKDSASFPYQRKYPLRPEALQGXQKIVKDLKAQGLVKP--CSSPCNTPILGVRKPNGQWRLVQDLRIINEAVFPLYPAVSSPYTLLLIE
EAEWFTVLDLKDAFFCIPVRPDSQFLFAFED-PL---NPTSQLTWTVLPQGFRDSPHLFGQALAQDLSQFSYL--DTLVLQYVDDLLLVAR-SETLCHQA
TQELLTFLTTCGYKVSKPKARLSQEIRYLGLKLSKGTRALSEERIAYPHPKTLKQLRGFLGITGFCRKQIPRYTARPLYTLIRETQKNTYLVRWTP-TEV
AFQALKKALTQAPVFSLPT-GQDFSLYAT-EKTGIALGVLTQVSGMPVVYLSKEIDVVAKGWPHCLWVMAAVAVLVSEAVKIIQGRDTVWTSHDVNLWLS
DNHLLYQ-ALLLPVLRLEHNCQQVAARGD-LLEVPLTDPLNLYTDGSSEKGLRGYAVISDNGILESNRLTPTSAHLAELIALTWALELGEGRVNIYSDSK
YAYLVLEGTPINHQEAIRRLLLAVQKPKEVAVLHCQGHQEIEGNRQADIEAKKA----
>tr|A0A074LLR4|A0A074LLR4_9BACL Uncharacterized protein OS=Tumebacillus flagellatus GN=EL26_24220 PE=4 SV=1
--VRQAPLIIPLKATSTPVSIKQYPMSQKARLGIKPHIQRLLDQGILVP--CQSPWNTPLLPVKKPGTDYRPVQDLREVNKRVEDIHPTVPNPYNLLGLP
SHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPE-MGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAAT-SELDCQQG
TRALLQTLGNLGYRASAKKAQIQKQVKYLGYLLKEGQRWLTEARKGQPTPKTPRQLRRFLGTAGFCRLFIPGFAAAPLYPLTKTGT----LFNWGPDQQK
AYQEIKQALLTAPALGLPDLTKPFELFVD-EKQGYAKGVLTQKLGPPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPVIGAPHAVERWLS
KARMTYQ-ALLLDRVQFQHNCLDIGTRPD-LTDQPLPDAHTWYTNGSSQEGQRGAAVTTETEVIWAKALPATSAQRAELIALTQALKMAEGKLNVYTDSR
YAFATAEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKARGNRMADQAARKA----
>tr|K7EX76|K7EX76_PELSI Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
---------------------------------------------------MQSVCNSPVWPVLKADGTYRMTIDFRALNAVTPATAPVVAKYNEIVAVA
GSKWFSVIDLANAFMAIPLHPSCWYKFAFTYR-------GQQYAFTRAPQGFHSSPSICHAHVTKMWDQLHPGHF-SYVISYVDDILIHTP-TPELNREI
TREVLNIVQETGFKVNREKAQLQQKVKYLGVCLGDEGRTPDQQRVKLPAPTDTHSLRALVGTFNFSREFIEMFSAKPLYQLLKKNR----IWEWGPDQQT
ALATLKQDLAKAPALAYPDPALPFVIQLA-SSETSIGATLHQRQGDVIAYASRLLDQTEQGFTPCERECLALVWSLSHWEFIIGGSKIVQTVHSPLGQVS
NPRIAWT-LTLVRGVEFEHTCPLPGG-MN-LADAKQKG-AIWFTDGSSHQGHPGYGAIRINDVEMLQGPVRHSAQAAEVEAVRAVLAYERDSVTIYTDSD
WTARAIDGRVISHADKWRQIANLIKERT--WVTHTKGHQKAHWNNRADALAKAA----
>tr|K7EWB9|K7EWB9_PELSI Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
-------------------------------------------------------------------------------------MAPVVAKYPEIVQIN
GARWFSVLDISNAFFSIPIAETSWHKFAFTFN-------DQQYTFTRLPQGFHNSPTICHRMVSKALKDI--PHK-VNVISYVDDILIATK-DRATHLVV
LDEVLSALEQAGFLINSQKAQLKQEVTYLGVNLGVEGRKPDKDRVKLPAPTDVHGLRMFLGLIGFCRDFIEEFGARPLYKLLNKRQ----EWQWGSEQEQ
AFFELKTALMRAPALAYPDPTKEYHLSLT-TGREAIGAVLMQHHGTPVAYGSRTLSGVEQQFTPCEKEVLALTWALIHWEYLIGQSPILKSSHTPVGRVS
HPRLAWT-LTLMHDIVVLHVCPIPLMSKY-EEVRKTTP-NIWVVDGSCNNGQVGAAALHVASGRKILRRVSPSAQAAEVVA----------IILACTDSD
WVLRSFDNRPVIYAQLLNYAWSLAENLR--FLFKVRAHRKSVLNNTVDQLAKQA----
>tr|H3A008|H3A008_LATCH Uncharacterized protein OS=Latimeria chalumnae GN=LOC102354508 PE=4 SV=1
----------------------------------------------------------------------------RRLNAVTPPMAPIVADLSLLTTLP
TYSIFTVLDIANGFWSLPHHPDCQYKFAFAFQ-------GTQYTWTCLPQGFHNSPALFHAAMRDALIPF--PYR-DNLVQYVDDLLLASS-SKEEHLLH
LEALLETISKAGLKVNPDKAQIKDCVSFLGIAITPSGRALDRHKLALPLPTDLTSLCSFLGMCNFMRSFMWNFSCKPLYQLLKLQQ----PFLWTESHTA
AVMSLKTALTSAPTLSSPDYTLPFHLFFT-STITSLAAVMAQHT-DPLAFASRLTSSVEQKYTPCELTLLAVHWALQHFLYLTGTHEIIHTTHSTSSTIS
SPRLSML-LSLQRCIQVPHTCPLPSPPP---PSGLHPS-CTLYIDGSCKEGTVGFAIYDPVSNHSELFKCEHSAQYAELAALIQALHSF-SSLLICSDSL
WTVLSADGKPLKHQYLLKVLFVVVYIRRSTLMLKVKAHDRNTYNCTVDGLAKQA----
>tr|H3BBN4|H3BBN4_LATCH Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
-----------------PAPQKQYSFPSEVVPHVQQTIDSLISQGVLRK--CASSVNSPIWPVRKSDGTWRLTVDYRRLNSCSQRCAPTVATLPEIMAVP
KDLWFSVLDIANGFWSIPLAHESQYTHTYC--------------------------------MKRALEDF--SSP-QCLTQYMDDLLLHTE-TKETHLHL
L----EELLVLGVKVNPTKAQLQQTVSFLGITLGKEGRTPAREKINLPLPLSEYTLHSFLGLVNYSREFIPRYAAKPLYNLLKKGI----EWNWTPQHTE
AVMELKKVLMQPLALLSQDMTRSFCLEIA-FSEHAISAVLSQEWHGPVAYASRVLTGVEQKYSQCEKAILAAFLAIKHFTYIVGTQKVLIPDDTPTGAVS
NSRLTWS-LLLQKDIEVGYTCPIPFIPA---PEDILPQ-VRVSIDGSSYESKPGFGVVIEEHGITVSKCCTHSTQHAGLAAVAYVLEIIKTHICIFTDSA
WVANALDGKPIVYAPLLNYVC----ELASVLIKKVKAHSRFEQNSLADDLAKQG----
>tr|Q8AGX7|Q8AGX7_9RETR Gag-Pro-Pol protein (Fragment) OS=Python curtus endogenous retrovirus PE=4 SV=1
-------------------WIDQWPLTVEKLTVLKQLVNEQLDNGHLEP--SLSPYNTPVFVIKKKSGKWRFLHDLRAVNAIIKPMGALQCGLPNPNLIP
QDYDMMIIDLKDCFFSIPLHPKDKHIFAFTVPALNNSQPTSRYQWKVLPQGMLNSPTMCQYFVSQVLQPYRDKYSSFLVYHYMDDILVAAPGPKGTVLKT
LPHLQHILQQGGLHIAPDKVQLSSPFHYLGHKVLESNPCLPNIQL--PPMPTLLQLQQYLGSINWIR-PYLGLSTIQLTALTKGKQPA-DVIPLQKEQLD
TVKL----INQALCTKWVDRMKDNLFSLLLTLPTG---AVVQVTPSLIEWIHLSHTPRATLTTKPAQFASLITKGRLRSKALAGVEPSVYVSCSLSTWES
LLAVSFALADWPGTVSC-HPPPDPRWQTPMS-PFPIHDAVTVFADGSKKFG----ACAWQVDGQWHTKITPSSAQRAELYASILAFEAFPHSFNLILDSL
YVSQIISS--------------------------------------------------
>tr|K7E1D8|K7E1D8_MONDO Uncharacterized protein (Fragment) OS=Monodelphis domestica PE=4 SV=1
--KSAVPVQIKTK-SSPPPSIPQYPLSKEAIEGITPVINSLIEQGIIIPC--KSEYNTPILPIKKPKHIYRFVQDLRAVNNHVIKRHSV---VSNIHTII
TATYFTVVDLCSAFFSIPIHENSRHIFAFTWK-------GSQYTWCRLPQGYVESPSLFEQILSQDTDNITFK--NSKLIKYVDDLLLASTD-AKTCQED
SKHLLLELHKRGHKISKDKVQWLQKVEYLGFILTVGAHYIENI-QKLSAPTTKKQLRAILGATGFCRQWIPCYITKPLIALTKDS--VPEPLKLEPEHLS
ALSDLKKAIMSAPALGIPDYNKPFTLYVHERRGVASGV-LTQTLSQRPAYYSAQLDPVAAGAPPCLRGVAATALLVTKTVDLVGCPLTIMCPHRITRYEI
TLLNSKRPATLLPDLPTSGEPLHNCELVSMALDTPLDNDLILFTDGSSFMGRYTGAAVVSEFATEWSALPSISAQGAELIALKQACIIAKDKATIYTDSR
YAFGI-----------------------------------------------------
>tr|W5NLS4|W5NLS4_LEPOC Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
--DMEPA-TF---TGKSPPYTKPYKINKEAEEGVRPVIQKLLAQGIVRKT--HSTSNSPIWPVKKASGAWRFTVDYSKANQHINRLTPL---VADPSAIF
EHQVFSVIDMANAFWSVPLHPEVQDWLAF-VD-------GEQYTWTRLPQGFHNSPTVYHMALVRHLRELP-PV-SFVVIQYVDDILIVSPD-AETHKKD
LQIILDHLVKKGHRASYSKAQLLDTVIYLGQKISPGKRELQAI-RTHPSPNTVRELRSFLGLCNFNRNWVGAFRAKPLTDLLKGGGRSLDPIAWSPEVEH
AFNDLKQALLQAPALGFPQTDQPFYLYVGEKNGFWTAV-LTQEHRYRPGYYSGSLDEVARGWGPCLRAVQAVCLAVQAVNNIVDQQLIVRCPHRWSKWWV
LLE-AERPATLLPDPSEA--MLEHSCVWAMGAEQPLRNDLILFTDGTSFIESGLGCDYRT----------------------------------------
----------------------------------------------------------
>tr|A0A0Q3Y513|A0A0Q3Y513_ALLMI Uncharacterized protein OS=Alligator mississippiensis GN=Y1Q_028450 PE=4 SV=1
--KHINPFKIPLKEGEGPVCVKQYPLKEATRAGLKPLIEKFKRYGWLIEG--SSPFNTLILGVPKAGTSFRLVQDLRAVNKKILVDHPM---VPNPHTIL
DAKVFSVLDLKDAFFSIPLHEDSQKLFAFEWE-------DTQLLWTVLSQGFVSSPHIFGTALQKDLEHWKERHPEVALLQYVDDLLIASPD-VQTGKKA
TESLLNTLGKKGYKVSREKAQIQPKVTFLGYEIEKGIRALQAI-QDMPAPRNPKELRAFLGLTGFCRLWIPDYKAKPLYESLTKE--GLANWKWTKENQH
AFELLKAALSQPPALMIPNGRKPYRLYVHENKGVASGV-LTQPVIWKPGYYSKVLDPVAKGWPACSRAVAATATLVEESQKIVGADMEIHTPHRQSRYEI
FLLSNKHPATLLPEPGP---PCHDCLVLTQTTDDPLEDEEEFFIDGSSSVGRHTGCAVVTLAETVWFAPFQLLLD-ALIHNFKPGVLVQKWKDPLHTAVR
LNWTH-----------------------------------------------------
>tr|K7E0D2|K7E0D2_MONDO Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1
--LSAPPIHVQLDPSKPLPRVPQYPLSREATEGIRPLIDNYLEAGILIKC--TSPCNSPILGVRKPGRGWRLVQDLRAVNACVIPRAPV---VPNPHNLL
SAKIFTVVDLCSAYFSVPLHADSQFLFAFTWE-------GIQLCWTVLLQGYTESATYYSQVLKADLAGLKFPF-GSTLLQYVDDLLLCSPD-AQSSRED
SIVLLKSLAQKGHKVSKEKMQFSSQVKFLGHLISAEGRSLAAI-LNFPRPKTKRQLRGFMGLAGYCRLWVPSFVAKPLFDLLKAS--SPEPLIWNEAAKI
AFMDLKSALSSSPALGRPNYSLPFHLFLLERNGISLGV-LSQKHHFRPGYYSKSLDPVARGLPSCLRAVVAASDLLELVEEVTESPLTLHVPHHLAKLEA
SLLAKSRPATFLPDIEESDREGHDCVIVDSVQEKELENDFSWYTDGSCLRGLVAGYAITTTAEVIEAGLPSISAQQAELEAVTRACELAKGRINIYMDSR
FLQGS-----------------------------------------------------
>tr|K7EZ27|K7EZ27_PELSI Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
--AQ-----APALPPSAVTHVKQYNVPAEAIAPVTELIKDLETRGVLIRT--HSPYNSPVWPVKKPNGKWRLTIDYRKLNSNTGPLTAA---VPNIASIV
NKQWLAVLDIKDMFFMVPLQPADQNRFAFTWK-------GVQYTFTRMPQGFKHSPTICHGALSKVLDGLTMPP-SIQMLQYIDDILIGGDT-TEEVQQA
VDLVKTALENLGLALPPDKCQGSHEVKFLGAVWMGGRRSVQEL-SQAPSPGDKSQLRQTLGVLGFWRKHVPGFIARPLYNLLKKS----AVWEWTPVHEE
ALRQLINEIHTYQALGPIHPDAPFHVYLTIGAGMSYAL-WQESEPRRPQFGSKSWQGSQANYTPYEKVLLAAYTALRETEELTNRAITIHTPLKWALYIH
YRVGGWREYHLPPQPSP--------------AAFDPSHEGVWFTDGSAKLRKGKAAAVPADNSTTPLTTDVGSAQLAELAAIKLACEAGA----------
----------------------------------------------------------
>tr|Q9QRA1|Q9QRA1_9DELA Pr gag-pro-pol OS=Human T-lymphotropic virus 1 GN=gag-pro-pol PE=4 SV=1
----------------RPPEISQFPLNPERLQALQHLVRKALEAGHIEPYT--GPGNNPVFPVKKANGTWRFIHDLRATNSLTIDLSSSSPGPPDLSSLP
TLAHLQTIDLKDAFFQIPLPKQFQPYFAFTVPQQCNYGPGTRYAWKVLPQGFKNSPTLFEMQLAHILQPIRQAFPQCTILQYMDDILLASPS-HEDLLLL
SEATMASLTSHGLPVSENKTQQTPTIKFLGQIISPNHLTYDAVTVPIRSRWALPELQALLGEIQWVSKGTPTLRLHSLYCALQRHTDPRDQIYLNPSQVQ
SLVQLRQALSQN-CRSRLVQTLPLLGAIMLTGTTTVVFQSKQQW--PLVWLHA----PLPHTSQCQLLASAVLLLDKYTLQSYGLCQTIHHNISTQTFNQ
FIQTSDH-----PSVTFLKTTAPLAPVF-TLSPVIINTAPCLFSDGST-----SRAAYILWDKHQRSLPLPKSAQRAELLGLLHGL--------------
----------------------------------------------------------
>tr|A0A089ZZS6|A0A089ZZS6_BLV Gag-pro-pol polyprotein OS=Bovine leukemia virus GN=gag-pro-pol PE=4 SV=1
----------------PPPEVPQFPLNLERLQALQDLVHRSLEAGYISPWD--GPGNNPVFPVRKPNGAWRFVHDLRATNALTKPIPALSPGPPDLTAIP
TLPHIICLDLKDAFFQIPVEDRFRSYFAFTLPTPGGLQPHRRFAWRVLPQGFINSPALFERALQEPLRQVSAAFSQSLLVSYMDDILIASPT-EEQRSQC
YQALAARLRDLGFQVASEKTRQTPPVPFLGQMVHEQIVTYQSLTLQISSPISLHQLQAVLGDLQWVSRGTPTTRLQLLYSSLKGIDDPRAIIQLSPEQLQ
GIAELRQALSHN-ARSRYNEQEPLLAYVHLTGSTLVLFQKGAQF--PLAYLQT----PLTDNQASLLLLLGCQYLQTQALSSYAKILKYYHNLPKTSLDN
WIQSSED-----PRVTLITRAEVFL-Q---FSPDPIPAALCLFSDGAT-----GRGAYCLWKDHFQAVPAPESAQKGELAGLLAGL--------------
----------------------------------------------------------
>sp|Q4U0X6|POL_HTL3P Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain Pyl43) GN=gag-pro-pol PE=3 SV=4
----------------PPPEVSQFPLNPERLQALTDLVSRALEAKHIEPYQ--GPGNNPIFPVKKPNGKWRFIHDLRATNSLTRDLASPSPGPPDLTSLP
QLPHLRTIDLTDAFFQIPLPAVFQPYFAFTLPQPNNHGPGTRYSWRVLPQGFKNSPTLFEQQLSHILAPVRKAFPNSLIIQYMDDILLASPA-LRELTAL
TDKVTNALTKEGLPMSLEKTQATPSIHFLGQVISPDCITYETLSIHVKSIWSLAELQSMLGELQWVSKGTPVLRLHQLYLALRGHRDPRDTIELTSTQVQ
ALKTIQKALALN-CRSRLVSQLPILALIILRGTTAVLFQTKQKW--PLVWLHT----PHPATSLRQLLANAIITLDKYSLQHYGQCKSFHHNISNQALTY
YLHTSDQ-----SSVSLLQVPQIFQPPF-IISPVVIDHAPCLFSDGAT-----SKAAFILWDKQQQVLPLPCSAQAGELFGLLAGL--------------
----------------------------------------------------------
>tr|O70641|O70641_9DELA Gag-pro-pol polyprotein OS=Simian T-lymphotropic virus 2 PE=4 SV=1
----------------PPPQIDQFPFKPERLQALTDLVSKALEASYIEPYS--GPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLASPSPGPPDLTSLS
TLPYLQTIDLTDAFFQIPLPKQFQPYFAFTIPQPCNYGPGARYAWTVLPQGFKNSPTLFEQQLAAVLSPIRKTFPMSTIIQYMDDILLASPT-QEELQQL
SKMTLQALVTHGLPVSQEKTQQTPQIRFLGQVISPNHITYETTTIPIKSQWTLTELQTVLGEIQWVSKGTPILRLQCLYSALRGYQDPRAHLLLQKQQLH
ALHAIQQALQHN-CRSRLNPALPILGLISLSGTTSVLFQARQRW--PLVWLHT----PHPPTSLCHLLACTILTLDKYSLQHYGQCQSFHHNMSNTALHD
FVKNSPH-----PSVTLLHLPALLQPLF-TLSPVVLTTAPCLFSDGSS-----QKAAYVLWDQTHDSVTLPNSAQKGELLALLSGI--------------
----------------------------------------------------------
>sp|P03363|POL_HTLV2 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 2 GN=gag-pro-pol PE=1 SV=4
----------------PPPQVDQFPLNPERLQALNDLVSKALEAGHIEPYS--GPGNNPVFPVKKPNGKWRFIHDLRATNAITTTLTSPSPGPPDLTSLP
TLPHLQTIDLTDAFFQIPLPKQYQPYFAFTIPQPCNYGPGTRYAWTVLPQGFKNSPTLFEQQLAAVLNPMRKMFPTSTIVQYMDDILLASPT-NEELQQL
SQLTLQALTTHGLPISQEKTQQTPQIRFLGQVISPNHITYESTTIPIKSQWTLTELQVILGEIQWVSKGTPILRLQSLYSALHGYRDPRACITLTPQQLH
ALHAIQQALQHN-CRGRLNPALPLLGLISLSGTTSVIFQPKQNW--PLAWLHT----PHPPTSLCHLLACTILTLDKYTLQHYGQCQSFHHNMSKQALCD
FLRNSPH-----PSVTLLHLPTLLQPIF-TLSPVVLDTAPCLFSDGSP-----QKAAYVLWDQTQDITPLPHSAQKGELLALICGL--------------
----------------------------------------------------------
>tr|A5AZ94|A5AZ94_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013950 PE=4 SV=1
-------------------------------------IDKLLQIRFIREVE-YPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDSTA
GQGMLSFLDAFSEYHQIPIPLTDEEKTAFITP-------QGLYCYK--------------RLMMKIFKPLVSRT----VEVYIDDIVVKSK-TREEHILH
LQEVFHLLKKYGMKLNPSKYAFGNASKFLGFMVSQRGIEVSPDQVKTPPPRSKKELQRLIGKLVALGRFIARFTDELFFLAIR---------------NS
AFKKIKHCLMQPSILSSPLPREKLYMYLAIS-EWAISATLFRCPSQKIYYISRALARYSKMELTALALRSAAQKLRHHPVVMLIDQPLRNISNLILQWGI
ELSEY--------GIEFQPRLVMADFVLEYS-RRPIQHWWTLRVDGASWSSGSGVGLLLSPTGEHQAIRLGASNNEAEYEVIDLALALSISRLRVYSDSQ
LVVRHVQKEYE-----------------------------------------------
>tr|A5C896|A5C896_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022768 PE=4 SV=1
-------------------------------------MDKFKCCSGT-----------------QKRRQMAGMRDYTNLNNACPKD---SFPLPRIDSTA
GQGMLSFLDAFSGYHQIPRSLDDEEKTAFITP-------HGLYCYKVMPFGLKNADATYQRLMTKIFKPLIGHT----VEVYIDDIVVKSK-TREEHVLH
LQEVFYLLRKYDMKLNPSKCAFGSVGKFLGFMVSQRGIEVSSDQIKTPPPRSKKELQRLTGKLVALGRFIARFTDEPFFLAIRKAGA----TGWTDSCQN
AFGKIKHCLKQPPILSSPILKEKLYMYLAVS-EWAISVVLFRCPSQKIYYINRALARYSKMELTTLALRSAAQKLRPHPTVVQTDQLLRNIPDLMLQWAI
ELSEF--------GIEFQPRLVMADFVLEYS-RRPIQRWWTLRVDGASRSSGSGVGLLLSPTRENQAIRLGASNNEAEYEAIDLALALSVSKLRVYSDSQ
LVVKH-----------------------------------------------------
>tr|A5AXZ5|A5AXZ5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041069 PE=4 SV=1
-------------------------------------IDKLLEAGFIREVS-YPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDSTS
GQGMLSFLDAFSGYHQIPMSPDDEEKTAFITP-------HGLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHS----VEVYIDDIVVKSK-TREQHILH
LQQVFRLLRKYGMKLNPSKCAFGSAGKFLGFMVSQRGIEVSPDQVKTPPPRNKKELQRLTGKLVALGRFIARFTDEPFFLAIRKAGT----QGWTDNCQN
ALERIKHCLMHPPILSSPIPKEKLYMYLAVS-EWAISAALFRCPSQKVYYVSRALARYSKMEANSLSSSKCCPKXPPPPSDCTDRXTPS-----------
-------------XHSXQTRFTMGHRIRIWNRKRPSNGWWTLRVDGASRSSGSGVGLXLSPTGEXQAIRLGASNNEAEYEAIDLALALSVSKLRIYSDSQ
LVVRHVQKEYE-----------------------------------------------
>tr|A5B9H8|A5B9H8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030339 PE=4 SV=1
-------------------------------------IDKLLEAGFIKEVS-YPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDSTS
GQGMLSFLDAFSGYHQIPMSPDDEEKTAFITP-------HGLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHS----VEVYIDDIVVKSE-TREQHILH
LQEVFHLLRKYGMKLNPSKCAFGSAGKFLGFMVNQRGIEVNPESSQ--------HGNTSSQEQEGV-----------TTPHRQAPGT----HGWTDSCQN
AFERIKHCLMQPPILSSPIPKEKLYMYLAVS-EWAISAVLFRCPSQKIYYVSRALAKYSKMKLTALALRSAAQRLRPHPVIVLTDQPLRNIPDLMLQWAI
ELSEF--------GIEFQPRLVMADFVLEYS-RRPSQHWWTLQVDGASRSSGSGVGLLLSPTGEHQAIRLGASNNEAEYEAIDLALALSVSKLRIHSDSQ
LVVKHVQEE-------------------------------------------------
>tr|A5BYZ2|A5BYZ2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001429 PE=4 SV=1
-------------------------------------IEKLLEVGFIREVD-YLDWLANVVVVPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDSTA
GQGVLSFLDTFSGYHQIPMSPVDEEKTAFITP-------HGLYCYKVMPFGLKNADATYQRLMTKIFKPAGRQH----SRGTCP--------PLAKSLPT
LKEVWHEVESFQMR-------LGSVGKFLGFMVSQRGIEVSPDQVKTPPPRSKKELQRLTGKLVALGLFIARFTDEPFFLAIRKAGA----NGWMDSCQS
ALEKIKHCLMQPPILSSPLPEEKLYMHLAVS-EWAISVVLFHCPSQKIYYISRALARYSKMELTALALRSAAQKLRPHPVVVLTDQPLRNILDLMLQWAI
ELSEY--------GIEFQPRLVMADFVLEYS-RRPIQHWWTLRVDGASRSSGSGVGLLLSPTREHQAIRLGASNNEAEYEAIDLTLALSISKLRIYSDSQ
LVVRHVQKEYE-----------------------------------------------
>tr|A5BQE7|A5BQE7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019387 PE=4 SV=1
-------------------------------------IDKLLEAGFIREVD-YPDWLTNVVVVPKKEDKWRVCVDYTNLNNACPKD---SFPLPWIDSTA
GQWMLSFLDAFSRYHQIPTSPADEEKTAFITP-------HGLYCYKVMSFGLKNADATYQRLMTKIFKPLVGRT----IEVYIDDIVVKSK-TREEHVLH
LQEVFQLLRKYGMKLNPSKCAFGSAGKFLGFMVSQXGIEVSPDQVKTPPSRSKKELQRLTGKLVALGRFIACFNDEPFFLEIRKAGA----NGWMDNCQS
ALEKIKHCLMQPPILSSPFSEEKLYVYLAVL-EWAISVVLFRCPSQKIYYINKALVSA-------------AHKLRPHPVVVLTDQPLRNILDLMLQWAI
ELSEF--------GIEFQPRLVMADFVLEYS-RRPIQRWWTLRVDGASRSSGSGVGLLLSPTGEHQAIRLGASNNEAEYETIDLTLTLSVSKLRVYSDSQ
LVVRH-----------------------------------------------------
>tr|A5BWP0|A5BWP0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027782 PE=4 SV=1
-------------------------------------IDKLLEAGFIREVD-YPDWLENVVVVPKKEGKWRVCVDYTNLNNACPKD---NFPLPRIDSTV
GQRMLSFLDAFSGYHQIPMSPADEEKTAFITP-------HDLYCYKVMSFRLKNAGATYQRLMTKIFKPLVGRI----IEVYIDDIVVKSK-TREEHVLQ
LQEVFHLLRKYGMKLNPSKCAFSSVGKFLGFMV------------KTPPPRSKKELQRLTGKLVALGRFIARFTDEPFFLAIRKTGA----SGWMDNCQS
AFEKIKHCLMQPPILSNPIPEEKLYMYLAVS-KWAISIVLFRYPSQKIYYINRALARYSKMELTALALRT-------YPVAVLTDQPLRNIPDLMLQWAI
ELSEF--------GIEFQPRLVMADFVLEYS-RGPSQCWWTLRVDGASRSSGSGVGLLLSPTGEYQAILLGVSNNEAEYEAIDLVLALSVSKLRVYSDSQ
LVVRHVQKEYE-----------------------------------------------
>tr|A5C427|A5C427_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027414 PE=4 SV=1
-------------------------------------IDKLLEAGFIRKVD-YPDWLANVVVVPKKEGKWWVCVDYTNLNNACPKD---SFPLPRIDSTV
GQGMLSFLDAFSGYHQIPISPVDEEKTAFITP-------HGLYCYKVMSFGLKNAGATYQRLMTKIFKPLVGRT----VEVYIDDIMVKSK-TREEHVFH
LQEVFHLLRKYDMKLNPSKCAFGSAGKLLGFMVSQRGIEVSPDQVKTPSPRSKKELQRLTGKLVALGHFIACFTNEPFFLAIRKAGA----NGWMDSCQS
AFEKIKHCLH---------GNQKLYMYLVVS-KWAISDVLFRCPSQKIYYVSRALASV-------------TQKLRPHPVVMLTDQPLRNIPDLMLQWAI
ELSEY--------GIEFQPKLVMVDFVQEYS-RRPIQRWWTLRVDGASRSSGSGVGLLLSPTGEHQAIRLGASNNEAEYEVIDLALALSVSKLRVYSDSQ
LVVRHVQKEYE-----------------------------------------------
>tr|A5C1H4|A5C1H4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020822 PE=4 SV=1
-------------------------------------MDKLLEAGFIREVS-YPEWLANVVVVPKKEGKWRVCIDYTNLNNACPKD---SFPLPRIDSTS
GQGMLSFLDAFSGYHQIPMSPDDEEKTAFITP-------HDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHS----VEVYIDDIVVKSK-TREQHVLH
LQEVFHLLRKYGMKLNPSKCAFGSAGKFLGFMVSQRGIEVSPDQIKTPPPRNKKELQRLTGKLVALGRFIARFTDEPFFLAIRKAGA----HGWTDSCQN
AFEKIKYCLTQPPILSSPIPKEKLYMYLRVS-EWAISAVLFRCPSQKIYYVSRALARYSKMELTALALRSAAQKLRPHPVIVLTDQPLRNIPDLMLQWAI
ELSEF--------GIEFQPRLVMADFVLEYF-RRPSQHWWTLRVDGASRSSGSGVGLLLSPIGEHQAIRLGASNNEAEYEAIDLALALSVSKLRIYSDSQ
LVVKHVQEEYE-----------------------------------------------
>tr|A5B9Q1|A5B9Q1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022470 PE=4 SV=1
-------------------------------------IDKLLEAGFIREVD-YPDWLANMVVVPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDSTA
GQGMLSFLDAFFGYHQIPMSPTDEEKTAFITP-------HDLYCYRVMPFGLKNAGATYQRLMTKIFKPLIGHT----VEVYIDDIMVKSK-TRDEHVLH
LQEVFHLLRKYGMKPNPFKCAFGSAGKFLGFMVSQTGIEVSSDQVKTPPPRNKKELQCLTGKLVALGHFIARFTDEPFFLAIRKTGT----NGWTDNSQK
AFEKIKHYLMQPPILSSLIPKEKLYMYLAVS-EWAISVVLFRCPLQKIYYVNRALARYSKMELTALALRSVAQKLCPHPVVVLTDQPLRNIPDLMLQWAI
ELSEF--------GIEFQPRLVMADFVMEYS-RKPSQRWWTLRVDGASRSSGSGVGLLLSPTGEHQAIRLGASNNEAEYEAIALALTLSVSKLRVYSDSQ
LVVNHVQKEYE-----------------------------------------------
>tr|A5BFW3|A5BFW3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007607 PE=4 SV=1
-------------------------------------IDKLLEAGFIRDVE-YPDWLANVVVVPKKEGKWWVCVNYTNLNNAYPKD---SFPLPRIDSTA
GQGMLSFLDAFFGYHQIPMALADEEKTAFITP-------HGLYCHK--------------RLMTKIFKPLVGPT----MEVYIDDIVVKSK-TQGEHALH
LQEVFHLVRKYGMKLNPSKCAFGSADKFLRFMVSQKGIEVSPDQVKTPPPRSKKKLQRLTGKFVALGRFIARFTDEPFFLAIRKADA----NGWTDGCQN
TFEKIKHYLMQPPILTSPLPREKLYMYLAVS-EWAINAVLFRCPSQKIYYVNRALARYSKMELT----------LRPHPMVVLTDQPLRNIPDLMLQWAI
ELSEY--------GIEFQPKLVMADFVLEYP-QRPAQHWWTLQVDGASRSSGSRVGLLLSPTREQQAIRLGASNNEAEYETIDLTLALSVSRLRFYSDSQ
LVVRQVQKEYE-----------------------------------------------
>tr|A5ASW0|A5ASW0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014126 PE=4 SV=1
-------------------------------------IDKLLEAEFIRKVV-YSDWLANVVVVPKKKGKWWVCVDYTNLNNACPKD---NFPLPRIDSTA
GQGMLSFLDAFSGYHQIPMSPADKEKTAFITP-------YGLYCYK--------------RLMTKIFKPLIGHT----VEVYIDDIVVKSK-TREEHVLH
LQEVFHLLRKYGKKLNPSKCAFGSDVKFLGFMVSQRGIEVSPDQVK-----------RLTGKLVALGRFIARFIDEHFFLAIRKAGV----NGWTDSCQN
AFEKIKHCLTQPPILSSLIPKEKLYMYLAVS-EWAISVVLFHYPSHKIYYVSRALARYSKMELTTLALRSAVQKLRPHPVVVLTDQPLRKIPDLMLQWAI
ELSEF--------GIEFQPRLVMADFVLEYS-RRPNQHWWTLRVNGASRSSGSGVRLLLSPTGEHQAIRLGASNNEAEYEAIDLALALSVSKLRVYSDSQ
LVVRYIQEEYE-----------------------------------------------
>tr|Q98ST1|Q98ST1_CHICK Pol-like protein ENS-3 OS=Gallus gallus GN=ens-3 PE=2 SV=1
-------------------------------------LAELKEQGIVIPTH-S-PFNSPVWPVRKPNGKWRLTIDYRRLNANTGPL---TAAVPNIAAIQ
EHPFMATIDVKDMFFMVPLHPDDQLRFAFTWE-------GQQYTFTRLPQGFKHSPTLAHYALAKELEQILEEGV--RLYQYIDDILIGGD-HLTPVKIM
HDKIIKRLEELGLTIPPDKIQSPAEVKFLGIWWKGGMACIPQDTLSLKMPENKKELQHALGLLVFWRKHIPDFSIIPLYDLLRKGVS----WGWTPVHEE
ALQLLIFEAITHQSLGPIHPSDPVQIEWGFA-HSGLSIHLWQKGPIRIGFYSRSFKRYSQLEKGLFVVSLAL-EAERQPIILRGPKVIKSVPDQVRKWYA
QIEHY--------CNIFKVTETLADILSTTDTVQVAPPVW--FTDASSKREGRAVAL---------QIG-------TDLTIIGSAQVGSTTRVHIYTDSY
AVFK---GCTE-----------------------------------------------
>tr|K0GEZ8|K0GEZ8_9ROSI Gag-pol OS=Castanea mollissima PE=4 SV=1
-------------------------------------VNKLKQAGAIKEIF-YPEWLANTVVVKKKNGKWRVCVDFTDLNKACPKD---PFPIPRIDATV
RHPRMSFLDAFQNYHQIPMSLNDQEKTAFRTP-------NGNYHYRVMPFGLKNAGSTYQRMVTRMFDSQLGRT----MEAYIDDMVIKSK-KVGDHLKD
LHETFSVLRKHKLRLNASKCSFGDSGKFLGYMITHRGIEFNPDQIKLHPPRNPKEVQKLAGMFAVLNRFISRSADRPFYRLLHKWKD----FLWTDECNL
AFEDLRQYLANPLILSRPEKKEVLYAYLAVM-NYAVSLVLIRND-QKIYYISKSLQRYLPLEKALLAVVHAT-KLPHHTIVVLTQLPLQAILDYVAKWGT
KLGAY--------DVKYMPRTDLVDFVAEFTEA--VMTLWEVCTDGASNRKGAGIGVVLTPEKLVKSLRL-ATNNEAEYEALQMVRHLGGEVVELYCDSR
LVFGQINGEFE-----------------------------------------------
>tr|Q7X7H5|Q7X7H5_ORYSJ OSJNBa0021F22.20 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0085C10.2 PE=4 SV=1
-------------------------------------IKRLYDAGFIHPYR-YAEWVSSIVPVIKKNGKVRVCIDFRDLNKATPKD---EYPMPVADAAS
GNKILSFMDRNTGYNQIFMAEEDIHKTAFRCPS-----AIGLFEWVVMTFDLKSAGATYQRAMNYIYHDLIGSL----VEVDIDDVVVKSK-EVDDHIAD
LRKVFERTRKYGLKMNPTKCAFGSARQFLGFLVHERGIEVTQRSVNIKPPENKTELQEMIGKINFVRRFISNLSGRPFTPLLRADQQ----FTWGAEQQK
ALDNIKEYLSSPPVLIPPQKGIPFRLYLSAG-EKSNGSVLIQE-LERVFYISRRLLRYSPMEKLCLCLYFLC-RLRHNECTVICKDVVRYMPILIGNWIF
SLTEF--------DLRYESPKAIADFIVEHRD-----SPWTLFFDGSVCTHGCGIGLVISPRGACFAYTI-ATNNQAEYEAVQLLKEVEANIIEIMGDSL
LVISQLAGEYE-----------------------------------------------
>tr|Q2QYW9|Q2QYW9_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g01330 PE=4 SV=1
-------------------------------------IKRLYDTGFIRPCR-YAEWVSSIVPVIKKNGKVRVCIDFSDLNKATPKD---EYPMPVADAAS
GHKILSFMDGNAGYNQFFMAEEDIHKTAFRCLG-----AIVLFEWVVMTFGLKSAGATFQRAMNYIYHDLIGWL----IEVYIDDVVVKSE-EIEDHIAD
LMKVFERTRKYGLKMNPTKCAFGSAGQLLGFLSHERGIEITQRSVNIQPTQNKTELQEMIGKINFVRRFISNLSGRPFTLLLRANQK----FTWGAEQQK
ALDNIKEYLSSPPVLIPPRKGVPFRLYLSAG-EKSIGSVLIQE-LEMVFYLSHRLLRYSPVEKLCLCLYFSC-RLRHNECTVICKDVVKYMPILVGKWIF
SLTEF--------NLRYESPKAIANFIVDHRD-----LPWTLFFDGSVCTRGCGIGLVISPRGACFAYTI-ATNNQAEYEAVQLLKEVEANAIEIMGDSL
LVISQLGGEYE-----------------------------------------------
>tr|Q2AA19|Q2AA19_ASPOF RNase H family protein OS=Asparagus officinalis GN=20.t00014 PE=4 SV=1
-------------------------------------VKKLIDSGFVREEQ-HPDWVANIVPVPKKNGKVRICIDFRDLNAACPKD---EFPLPITDNTC
GYERMSFMDGFSGYNQIKMHPDDEKHTAFRTP-------LGVYCYTVMPFGLKNAGATYQRAMNTIFHEHLRKK----IECCVDDIAVKSQ-CKGDHLTN
LKIMFEIMRAHQLKMNPTKSFLGSSGKFLGFIVTSRGISLDPEKVRMPPPKNLKELRGLQGRLAYIRRFISNLSGRPFSKLMKKGIS----FVWDAECQR
AFEEIKKYLTQPPVLVAPISGKPFLLYVRAM-DHSLGALLAQNNDEQIYYLSRIMMRYNPVEKKCLALVFAI-KIRHQTIQVISKNPLRVLPSLLAKWAI
LLSHY--------DMQFMPQKALADFLADHPVE--KACVWKLFFDGASRANPARVGVVLSPNGHVRGFSL-CTNNVAEYNALQLAEELNIQHLEAYGDSQ
LIVNQVQGEYE-----------------------------------------------
>tr|Q3I6J4|Q3I6J4_SILLA Pol-polyprotein OS=Silene latifolia GN=pol PE=4 SV=1
-------------------------------------VDKLLEAGFIMPCT-YPEWLANVVMVKKSSGGWRMCVDFTNLNKACPKD---CYPLPRIDATA
SYTMLSLLDAFSGYHQVFMAEEDVLKCAFITI-------HGTYMYKMMSFGLKNAGATYTRLVDKVFQDQKGRN----IEAYVDDAIVKSK-SDSEHLAD
LSETFCSLRKYKMKLNPMKCNFGRAGKFLGVLVSARGIDANPEKVQLLEPRNRKEVMMLTGRMAALARFISRSTDKPFFKVLKGNKD----FSWGEEQST
AFRQLKAHLITLPTLSRPMLGETLYLYIAVT-SATVSAVIIREE-QHIYFISHTLLNYPLIEKAAFAVVVAA-KLKPHPVTVLTDQPLEKAFEKLIKWAV
ELSGF--------GIQYKPRPALADFLAECTY------VWEVYTDGSSTTNSSGAGILISPNGDEYALKF-ASNNESEYEAVELARAAGAEHIVLKTDSL
LVTNQIRGEYE-----------------------------------------------
>tr|Q08GQ0|Q08GQ0_PIG Polyprotein OS=Sus scrofa PE=4 SV=1
---QVPPQVIQLKASATPVSVRQYPLSKEAQEGIRPHVQRLIQQGILVPV--QSPWNTPLLPVRKPTNDYRPVQDLREVNKRVQD---IHPTVPNPYNLL
QRSWYTVLDLKDAFFCLRLHPTSQPLFAFEWPGTGRTG---QLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDLLLAGA-TKQDCLEG
TKALLLELSDLGYRASAKKAQIRREVTYLGYSLRDGQWLTEKTVVQIPAPTTAKQMREFLGTAGFCRLWIPGFA--TLAAPLYPLTKEKGEFSWAPEHQK
AFDAIKKALLSAPALALPDVTKPFTLYVDERKGVA-RGVLTQTLGRPVAYLSKKLDPVASGWPICLKAIAAVAILVKDDKLTLGQENIVRQPP--DRWMT
NARMTHYQSLLLTEVTFAPPVTHDCHLRKDLTDIPLTGVLTWFTDGSSVEGRMAGAAVVDGTRTIWASSLPTSAQKAELMALTQALRLAEKSINIYTDSR
YAFAAIYKQRGTSAGIKEEILSLL---EAVHIIHCPGHKASRGNQMADRVAKQ-----
>tr|A7LKA6|A7LKA6_9GAMR Gag-pol polyprotein OS=RD114 retrovirus GN=gag PE=4 SV=1
---CQAPIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPC--RSPWNTPLLPVKKPTRDYRPVQDLREVNKRTMD---IHPTVPNPYNLL
DRTWYTVLDLKDAFFCLPLAPQSQELFAFEWPERGISG---QLTWTRLPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAP-TEEACTRG
TKHLLRELGDKGYRASAKKAQIQTKVTYLGYILSEGKWLTPETVARIPPPQSPREVREFLGTAGFCRLWIPGFA--ELAAPLYALTKESAPFTWQEKHQS
AFEALKEALLSAPALGLPDTSKPFTLFIDEKQGIA-KGVLTQKLGRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDAKLTLGQEAIVRQPP--DRWIT
NARLTHYQALLLTDVQFGPQSAHDCRVREDLKDQELPDDHSWYTDGSSDSGRRAGAAVVDGHHIIWAQSLPTSAQKAELIALTKALELSEKKANIYTDSR
YAFASIYERRGTSEGIKAEIIALL---KALFIIHCPGHKGATGNRQADQVARQ-----
>tr|S0AU94|S0AU94_KORV Gag-pol polyprotein OS=Koala retrovirus PE=4 SV=1
---QVPPVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPC--QSPWNTPLLPVKKPTNDYRPVQDLREVNKRVQD---IHPTVPNPYNLL
SHTWYSVLDLKDAFFCLKPHPNSQPLFAFEWPEKGNTG---QLTWTRLPQGFKNSPTLFDEALHRDLASFRALNPQVVMLQYVDDLLVAAP-TYRDCKEG
TRRLLQELSKLGYRVSAKKAQLREEVTYLGYLLKGGKWLTPATVMKIPTPTTPRQVREFLGTAGFCRLWIPGFA--SLAAPLYPLTREKVPFTWTEAHQE
AFGRIKEALLSAPALALPDLTKPFALYVDEKEGVA-RGVLTQTLGRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDDKLTLGQESIVRQPP--DRWMT
NARMTHYQSLLLNEVSFAPTPIHICSIRPDLRDQPLPGVPAWYTDGSSMDGRQAGAAIVDNTRTVRASNLPTSAQKAELIALTQALRLAEKSINIYTDSR
YAFAAIYKQRGTSAGIKEEILALL---EAIHIIHCPGHRGATGNRKADEAAKQ-----
>tr|O39735|O39735_MLVFR Gag-pol polyprotein (Precursor protein) OS=Friend murine leukemia virus PE=4 SV=1
---RQAPLIIPLRAASTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPC--QSPWNTPLLPVKKPTNDYRPVQDLREVNKRVED---IHPTVPNPYNLL
SHQWYTVLDLKDAFFCLRLHPTSQSLFAFEWPEMGISG---QLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAAT-SELDCQQG
TRALLQTLGDLGYRASAKKAQIQKQVKYLGYLLKEGQWLTEETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFA--EMAAPLYPLTKTGTLFKWGPDQQK
AYQEIKQALLTAPALGLPDLTKPFELFVDEKTGYA-KGVLTQKLGRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDGKLTMGQEALVKQPP--DRWLS
NARMTHYQALLLTDVQFGP-LQHDCLIRPDLTDQPLPDDHTWYTDGSSQEGRKAGAAVTTETEVIWAKALPTSAQRAELIALTQALKMAEKKLNVYTDSR
YAFAEIYRRRGTSEGIKEEILALL---KALSIIHCPGHKGARGNRMADQAARE-----
>tr|G3XDD7|G3XDD7_FLV Gag-pol polyprotein OS=Feline leukemia virus PE=4 SV=1
---CQAPVLIQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILKPC--RSPWNTPLLPVKKPTGDYRPVQDLREVNKRVED---IHPTVPNPYNLL
SHPWYTVLDLKDAFFCLRLHPESQLLFAFEWPEIGLSG---QLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPTLVLLQYVDDLLLAAA-TRTECLEG
TKALLKTLGSKGYRASAKKAQILQKVTYLGYSLEDGQWLTKEAILSIPVPENPRQVREFLGTAGYCRLWIPGFA--ELAAPLYPLTRPGTLFQWGPDQQL
AFENIKKALLSSPALGLPDITKPFELFIDESSGFA-KGVLVQKLGRPVAYLSKKLDTVASGWPPCLRMVAAIAILVKDGKLTLGQEALVRQPP--NRWLS
NARMTHYQAMLLAEVHFGP-DHHDCLIRSDLTDQPLPDDLTWYTDGSSRNGRKAGAAVTTESEVIWAASLPTSAQRAELIALTQALKMAKKKLTVYTDSR
YAFAEIYRRRGTSEGIKNEILALL---EALFIIHCPGHKGAKGNRLADDTAKK-----
>tr|A0A061IHU6|A0A061IHU6_CRIGR Neutral cholesterol ester hydrolase 1-like protein OS=Cricetulus griseus GN=H671_2g6379 PE=4 SV=1
-----------------SAEVRQYPMTQEAKEGIRPHIQRLLQQGILIH--CQSPWNTPLLPVRKPTNDYRPVQDLREVNKRVLD---IHPTVPNPYNLL
ERSWYTVLDLKDAFFCLRLHPSSQLLFAFEWRDPDG-GHTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRARNPQISLLQYVDDLLLAASTWELC-LNG
TKELLKELGELGYRVSAKKAQLCPEVTYLGYTLREGKWLTEKTVMQIPTPTTPRQVREFLGTAGFCRLWIPGFATLALYPLTKDKV----PFTWKEEHQK
AFEKIKAALLTAPALTLPDLTKTFTLYVDERAG-IARGVLTQALGRPVAYLSKKLDPVASGWPSCLKAIAAVQHVALESIVRQ--------PP--DRWMT
NSRMTHYQATLLPEADD-STPVHRCDIRTDLTDQPWPGVPSWYTDGSSVVEGKRKAGAAVVDGKQVLWSLETSAQKAELLALIQALRLAGKAVNIYTDSR
YAFAAIYRQRGTSAGNKEEILEAIHLPKKLAIVHCPGHKGTRGNQMADQTAKQ-----
>tr|Q8JIZ1|Q8JIZ1_DANRE Polyprotein OS=Danio rerio GN=gag/pol PE=4 SV=1
----IEPVLFQIDR-TEIVNVRQYKLRPEAVEGIGETIKELEAAEVLRRTV--SGWNTPILPVLKKTGKYRMVHDLRLINEKVL---TATLPTPNPYTLT
KHSHFTCIDLANAFFCMPLAEQCQGIFAFSY-------QGAQYTYNRLPQGFILSPGLFNQALRELLDSCT-LHEGTIVIQYVDDLLLAAHSNEV-CLQD
TRKVLTLLSTAGLKVSKEKIQISATVHFLGRIIGQTGTALSQTVLSHPKPLVVKDMMSFLGLIGYSRQYVPNYSERALAKE-VGMKNSRARLNWTQEAEA
VFCGLKADLATAAALQTPNYELPFFLDVSTTAS-TTNGVLYQKQQRRVLHYLPLDKI-EQKQPTCARYAAGLAKLIEEHIVM---GHPLHVLT-SHSVIS
FITSSAFRILTAPHITYEHQGVNMAHAGECLSSIPLTKPLTLFCDGCCFKTDSGKLAYQTDDGYTIVLQDRPSAQRAELLALVRALHMAKDTVNIHSDSA
YAVGAAT---------------------------------------------------
>tr|Q2VF30|Q2VF30_9RETR Polyprotein OS=Atlantic salmon swim bladder sarcoma virus PE=4 SV=1
----VPPVRVQLTH-QGQVYRSQYRLKYEQIEGIRPTVEGLLGADCIYATS--SPWNTPILPVPKADKTYRMVQDFRAVNDVTT---GVDLPVPDPHVLS
KHQYFTVVDLANAFFSIPLHVDSQPLFAFTY-------DNQQYTYSVLPQGYRCSPGIFNRVLKDHLKEIV-IPDGVVLIQYVDDLLLAACSSDQ-CLAA
TKILLDFLATKGYKVKRSKVQTCRTVLFLGREVSAEGAGLSNSILHHPRPTTVSGLLSFLGLTGYSRTHIPDYTCREIVRQ-AGARNLHASLIWTPEATC
AFGLLKTDLSVAAALAAPDYSKPFHLDVSEKEG-FASAILFQKQERRVLMYHKLDHI-ETGQTTCSRYVAAVAKAIEAHLVM---CHKMEIHT-HHGVAA
YLTAKEFNKCTQSHITFVNTDKNMANADECLGNDPLPQALWLYTDGCCYRGKDGNIAYQDSNGHSTVIPQPASAQLAEIIGLTRALTLAEGTVNIYTDSA
YAHGAVH---------------------------------------------------
>tr|C5XXC2|C5XXC2_SORBI Putative uncharacterized protein Sb04g025810 OS=Sorghum bicolor GN=Sb04g025810 PE=4 SV=1
--RNLIEHSLNVSKTARPIKQKLRRFARDKKKAIRTEITRLLAAGFIKEVY-HPDWLANPVLVRKKNKEWRMCVDYTDLNKHCPKD---PFGLPRIDEVA
GCELLSFLDCYSGYHQISLKEDDQIKTSFITP-------FGAYCYTTMSFELKNVGATYQRAIQQCLHDEIRDD---LVEAYVDDVVVKTR-DASTLIDN
LDRTFKALNKYKWKLNPKKCIFVPSGLLLGNVVSRDGIRPNPSKVKMRPPKNVKDIQKLTGYMAALSRFISRLGELPFFKLLKAS----EKFSWTEEADA
AFTQLKTFLTSPPVLTAPQPNEDLLLYIAAT-DRVVSTAIVVERDRPVYFISEVLNESKARYPQIQKLIYVIRKLKHHRVLVTTSFPLGDINDRIVKWAM
ELFPF--------SLDFQSRTALVDFIAEGTDESDVSDHRSMFFDGSLNINGAGAGILVSPNKDRYVLRILASNNVAEYEACLHDIRIAVKRLYVYGDSA
LVINQLNK--------------------------------------------------
>tr|H2KW74|H2KW74_ORYSJ Retrotransposon protein, putative, unclassified, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g40284 PE=4 SV=1
--TDLIMHHLAVKPDAKPRKQKLRKMSADRQQAAKAEVQKLLKAGVIQEID-HPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKD---DFLLPRIDQLA
SCELMSFLDAYSGYHQIHMNPADIPKTAFITP-------FGTFCHLRMPFGLRNAGATFARLVYKVLYKQLGR----NVEAYVDDVVVKSR-KAFDHASD
LQETFDNLRAAGTKLNPEKCVFVRAGKLLGFLVSERGIEANPEKIDMKPPLSVREVQKLAGRIAALNRFLSKAAELPFFKTLRGV----EKFHWTPECQA
AFGELKQYLQSPPALISLAPGSELLLYLAAS-PVAVSAALVQEIDKPVYFISKALQGAKTRYIEMEKLAYALCKLKHHKVIVPSQYPLGEITGRLSKWAA
ELSPF--------DLHFVARTVLADFVAEWTPAEPVKQPWVMYSDGSWSHKGAGIAAVISPSGVRYAARLQTTNNAAEYEAILLGLRKAVRRLLIRTDSK
LVAGHVDK--------------------------------------------------
>tr|A5C2S7|A5C2S7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013563 PE=4 SV=1
--PSVTSHKLNILPTARPIRQKVRRFHPDRQKIIRIEIDKLLEAGFIREVD-YPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDQIA
GQGMLSFLDAFFGYHQIPMSPADEEKTVFITP-------HGLYCYRVMPFGLKNVGATYQILMTKIFKPLIGH----TVEVYIDDIVVKSE-TRDEHVLH
LQEVFHLLRKYGMKLNPSKCAFISAGKFLGFMVSQRGIEVSPDQVKTPPPRNKKELQRLTGKLVALGP---------------------RTNGWMDNCQN
AFEKIKHCLMQPPILSSLIPKEKLYMYLAVS-EWAISAVLFRCPSKPIYYVSRALADVETRYSKMELTTLALQKLRPHPVVVLTYQPLRNITERMLQWAI
ELSEF--------GIEFQPRLVMADFVLEYSQSSSEKEWWTLRVDGASRSSGVHVARFY-PDYLRHTTLMHDQHRPSGYVSRLNQESILRPSIHLRGSPG
T---------------------------------------------------------
>tr|A5C895|A5C895_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042528 PE=4 SV=1
--PSIVQHHLPILPYARL---------------VKEEIQKQLSVRFISVV-EYPEWLANVIPVPKKDGKVRVRVDFRDLNKASPKD---DFPLPHIDLLA
GHSMLCFMDGFPGYNQILMALEDMEKTTFITK-------WGAYCYKVMPFGLKNVGATYQRVATTLFHDMMHK----DVEVYVDDMIVKSQ-GRADHLGA
LERFFERIRKFRLRLNPKKCAFVTSGKLLGHMVNEWGIEVDLDKIKMLALKIEKEIRGFMGRLQYISRFIARLIDEPIFRLLRKN----QPTVWNDDYQL
AFETIKEYFLSPHVLVPPTPGRPLLLYLSIS-DMALGCMLAQIDDRAIYYL-------------------------------------------------
---KF--------NIQYVSQKHLADFPNEEFVMTSL-SGWCMYFD-------------------------------VEYEACILGLETAIRQMEVFGDSN
MVLRQIQGDWKTRDVKIRAYLELLARFDDLRYVHLPR----AQNRFADALATLT----
>tr|A5BW48|A5BW48_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001524 PE=4 SV=1
--PSIVQHHLPTLPHARLVKQKLRRLHPRWSLQ---------------------------------DGKVRVCVDFRDLNKASPKD---DFPLPHIDLLA
GHSMLSFMDGFSGYNQILMAPEDMEKTTFITE-------WGTYCYRVMPFGLKNAGATYQRAATTLFHDMMHR----DVEVYVDDMIVKSR-GRADHLDA
LERFLERIRKFRLRLNPKKCAFVTSGKLLGHMVSERGIEVDPDKIKMPAPKIEKEIRSFLGILQYINRFIARLTDEPIFRLLRKN----QPTVWNDD---
---------------LPPTLGRPLLLYLSVS-DMALGCMLAQIDDRAIYYLSKRMLEYEVKYVMIERLCLALVWARRYSVHLISLDPLRYLPTLLMRWLV
LLTEF--------DIQYVSQKHLADFPDEEFVMTSL-SGWCLYFDGAANQLGYGIGVLLSPQGDHRSIRLAITNNIVEYEACILGLETAKDATLCLED--
---RTGRSDWSNRRLVTVS--------SHLDWIEIEP----GLNRLN-----------
>tr|A5AW20|A5AW20_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008545 PE=4 SV=1
--PSIVQHRLPLLPHARP---------------VKEEIQKQLSVGFLSVV-EYPEWLANVVPVPKKDCKVRVCVDFRDLNKASLKD---DFSLPYIDMLA
GHSMLSFMDGFFGYSQILMAPKDMEKT-------------------VMPFGLKNARTTYQRAATTLFHDMMHR----DVEVYVDDMIVKSR-GRSDHLVA
LERFFERIRQFRLRLNPKKCTFVNSGKLLGYMVSERGIEVDPDKIRMPALRTEASWAD------------------------------------------
--FRSREYLLSPPVLAPPTPGHPLLLYLSVS-DVALGCMLAQLDDRVIYYLSKRMLDYETRYVMIERYCLALVWDRRYSVHLISLDPLRYLPALLMRWLV
LLTEF--------DIHYVTQKHLADFPNEDVAVTSL-SGWRMYFDGAANHSRYGICVLLSPHE------------------------TAIRQMEVFGDSN
LVLRQIQGEWKTRDVKLRAYLELLGRFDDLRYTHLPR----AQNQFADALATLA----
>tr|A5B076|A5B076_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003744 PE=4 SV=1
--PSIVQHRLLLLPHAKPVKQKLRQLHPRWSLEVKKEIQKQLSVGFLSVV-EYPEWLANVVPVPKKGGKVRVCVDFKDLNKASPKD---DFPLPHIDMLT
-----------------------------------------------------------------------------------DDMIVKSR-GRSDHLAA
LERFFNRIRQFKLRLNPKKCTFVTSGKLLGYMVSERGIEVDLDKIRIPAPRTEREVKGFLGRLQYSRRFIARLTDEPIFRLLRKS----QPTVWGDQCQH
AFERIREYLLSPPVLAPPTPSRPLFLYLSIS-DVALGY-------RAIYYLSKRMLDYETRYVMIERYCLALVWARRYSVHLISLDPLRYLPALLMRWLV
LLTEF--------DIHYVNQKYLADFPNEDVAVTSL-SGWRMYFDGTTNHSGYGISVLLSPHGDHRSIRLTATNNIVEYEACILGLKTAIGQMEVFGDSN
LVFRQIQGEWKTRDAKLRAYLELLAKFKDLRYTHLPR----AQNQFADALTTLA----
>tr|A5B8Z6|A5B8Z6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040221 PE=4 SV=1
--RSIVQHHLPILSHARPVKQKLRRLHPRWSLQVKEEIQKQLSVGFISVV-EFPKWLANVVPVPKKDGKVRVCVDFKDLNKANPKD---DFPLPHIDLLA
GHSMLSFMDGFLGYNQILMAPEDMEKTTFITE-------WGTYCYKVMPFGLKNAGATYQRAATTLFHEMMHR----DVEVYVDDMIVKSQ-GRADHLEA
LERFFERIRKFRLRLNPKKCTFVTSGKLLGHMVSERGIEVDPDKIKMPAPKTEKEIKVFWAD--------------------------------------
----------------------------YIS-DMALGNMLAQIDDWAIYYLSKRILQYEVKYVMIERLCLALVWARRYSMHLISLDPLRYLPALLMRWLV
LLTEF--------DIQYVSQKHLADFPDEEFVMTSL-SGWCMYFDGVANQSGYGIGVQLSPQGDHRSVRLAATNNIVEYEACILGLETAIRQMEVFGDSN
LVLRQIQGDWKTRDVKLRAYLELRARFDDLRYVHLPR----AQNRFAGALATLV----
>tr|A5B3D7|A5B3D7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000572 PE=4 SV=1
--PSIVQHHLPILPHVRPVKQKLRRLHPRWSLQVKEEIQKQLSVGFISVV-EYPEWLANVVPVPKKDGKVRVCVDFRDLNKASPKD---DFPLPHIDLLA
GHSMLSFMDGFSGYNQILMASRGYGE---------------------------------------DGLHYRVG----DVEVYVDDMIVKSR-GRADHLDA
LERFFERIRKFRLRLNPKKCTFVTSGKLLGHM--------------------------------YISRFIARLTDEPIFRLLRKN----QPTVWNDXCQI
AFEKIKEYLLSPPILVPPMPGRPLLLYLSVS-DMALGCMLAQLDDRAIYYLSKRMLEYEMRYVMIERMCLALVWARRYSVCLISLDPLRYLPALLMRWLV
LLTEF--------DIQYVSQKHLADFPDEEFIMTSL-SGWRMYFDGXANQSGYGIGVLLSPQGDHRSVRLAATNNIVEYEACILGLETAIRQMXVFGDSN
LVLRQIQGDWKTRDVKLRAYLELLTRFDDLRYVHLPR----AQNRFADALATLA----
>tr|A5BID0|A5BID0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037486 PE=4 SV=1
--------------------------------NVKEEIQKQLSVGFISVV-EYPEWLANVVPVPKKDGKVRVCVDFRDLNKASPKD---DFPLPHIDLLT
GHSMLSFMDGFSGYNQILMASEDMEKIAFITE-------WGTYCYRVMPFGLKNAGATYQRAATTLFHDMMHR----DVEVYVDDMIVKYR-GRVDHLAA
LERFFERIRKFRLRLNPKKCTFVTAGKLLGHMVSERGIEVDPDKIKMPVPRTEKEIKGFLGRLQYISRFIARLTNEPIFRLLRKN----QPTVWNDDCQL
AFERIKEYLLSPPVLVPPMPGRPLLLYLSVS-DMALGCILAQLDDRAIYYLSKRMLEYEMRYVMIERFCLALVWARRYSVHLISLDXLRYLPALVS----
-------------------QKHLADFPDEEFVMTRL-SGWXMYXDGAANHSGYGIGVLLSPQGDHRSVRLTTTNNIVEYEACILGLETAITQMDVLGDSN
LVLRQLLQ--LTKDTKLKAYLELLEKFEELKYIHLPK----VHNQFXDALATLA----
>tr|Q6WAY3|Q6WAY3_PEA Gag/pol polyprotein OS=Pisum sativum PE=4 SV=1
--TDIVVHRLPLREGCPSVKQKLRRTSPDMATKIKEEVQKQWDAGFLAVT-SYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKD---DFPLPHIDVLA
QSSVFSFMDGFSGYNQIKMAPEDMEKTTFITP-------WGTFCYKVMPFGLKNAGATYQRAMTTLFHDMMHK----EIEVYVDDMIAKSQ-TEEEHLVN
LQKLFDRLRKFKLRLNPNKCTFVRSGKLLGFIVSEKGIEVDPAKVKMPEPKTEKQVRGFLGRLNYIARFISHLTAEPIFKLLRKN----QAIKWNDDCQK
AFDKIKEYLQKPPILIPPVPGRPLIMYLSVT-ENSMGCVLGRHDEHAIYYLSKKFTDCETRYSLLEKTCCALAWARRHTTLLISMDPVKYIPALVARWQM
ILTEY--------DIQYTSQKYLAEFPDEDIMLKPD-DKWTLMFDGAVNMNGNGVGAVLNPKGAHFSARLTVTNNEAEYEACIMGIEEAIKTLDIFGDSA
LVVNQVNGDWNTNQPHLIDYTRRITFFKKVKLYHVPR----DENQMADALATLS----
>tr|A5AR39|A5AR39_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016459 PE=4 SV=1
--PSIASHKLNVFPAARPIRQKIRRFHPDRQRVIQDEINKLLEAGFIREV-SYPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDQIS
GQGMLSFLDAFSGYHQIPMSPDDEEKTAFITP-------HGLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGR----SVEVYIDDIVVKSK-TREQHILH
LQEVFYLLRKYDMKLNPSKCAFVSAGKFLGFMVSQRGIEVSPDQVKTPPPRNKKELQRLTGKLVALGRFIARFTLRPFFLAIRKAG----TQGWTDNCQN
ALERIKHCLMHPPILSSPMPKEKLYMYLAVS-EWAISAVLFRCPSKPVYYVSRALADLRP-------------YFQAHPVIVLTDQPLRSIPDRMLQWAI
ELSEF--------GIEFQPRLVMADFVLEYS-RRPDQEWWTLRVDGASRSSGSGVGLLLSPTGEHQAIRL-----------------------GFSADSQ
LVVRHVQKEYE-----------------------------------------------
>tr|A5C3U5|A5C3U5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027121 PE=4 SV=1
--PSIVSHRLNVLLTARPVRQRVRRFHPDRQKIIRDEIDKLLEAGFIREV-EHPDWLANVVVIPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDQIA
GQGMLSFLDAFSGYHQILMAPADEEKTAFITP-------YGLYCYKVMPFGLKNASATYQRLMTKIFKPLVGS----TVEVYIDDIVVKSK-TREEHTLH
LQEVFHLLRKYGMKLDPSKCAFVSAGKFLGFMVSQRGIEVSSDQVKTPSPRSKKELQRLTGKLVALGRFIACFTLRPFFLAIRKAG----ASGWTDSCQS
TFEKIKHCLMHPPILSSLLPRENCICTWLYR-SGQL--ALFYSAA--------RSRNLRP-------------YFQAHPVXVLTDQPFRKIPDKMLQWAI
ELSEY--------GIEFQPRLVIADFVLEYS-RRSTVEWWTLRVDGASRSSGSGVGLLLSPTGEHQAIQL-----------------------GFPADSQ
LVVRHVQKEYE-----------------------------------------------
>tr|A5C917|A5C917_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008564 PE=4 SV=1
---SIVSYKLNVLPIVRPVRQRVRRFHPDRQKIIRDEIDKLLEAGFIREVE-HLDWLANLVVVPKKEGKWRVCVDYTNLNNACPKDR-------------
---MLSFLDAFSEYHQIPMSPVDEEKTAFITP-------HGLYCYKVMPFGLKNVGATYQRLMTKIFKPLVGH----TVEVYIDDIVVKSK-TREEHVLH
LQEVFHLLRKYGMKLNPSKCAFVSAGKFLGFMVSQRGIEEQKGITA------------HHRQARRANRFIARFTLRPFFLAIRKAG----ESGWTDSCQS
AFEKIKHCLMQPPILSSPLPEEKFYMYLAVL-EWAISVVLFHCPSKPIYYVSRVLADIETRYSKMELTALALQKLRPHLVVVLTDQPLRNIPDLMLQWAI
ELSEY--------GIEFQPRLVMADFVLEYS-RKPIQRWWTLRVDGASWSSGSGVRLLLSPTGEEQAIRLGASNNEAEYEAIDLALALSVSRLRVYNDSQ
LVVKH-----------------------------------------------------
>tr|A5AYB3|A5AYB3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040652 PE=4 SV=1
---SIVSHKLNVFSTARPVRQKIRRFHPDRQNVIQSEIDKLLEAGFIREVY-YPNWLANVVVVPKKEGKWRVCVDYTNLNNACPKDNFPLPRIDQVDSTS
GQGMLSFLDAFSGYHQIPMSPDDEEKTTFRTP-------HGLYCYKVMLFGLKNAGATYQRLMTKIFKPLIGH----TVEVYIDDIVVKSK-TREEHVLH
LQEVFHLLRKYGMKLNPSKCAFVSAGKFLGFMVSQRGIELSSDQVKAVMETPKKELQRLTGKLVALGRFIARFTLRPFFLAIRKAG----AHGWTDSCQN
AFEKIKHCLMQPPILSSPIPKEKLYMYLAVS-EWAISVVLFRYPSKPIYYVSRALADVETRYSKMELTALALQKLRPHPVIVLTDQPLRNIPDLMLQWAI
ELSEF--------RIDFQPRLVMADFVLEYS-RRPSQHWWTLRVDGASHSSGSGVGLLLSPIGEEQAIWLGASNNEAEYEAIDLALTLSVSKLRIYSDSQ
LVVRH-----------------------------------------------------
>tr|Q8S7Z2|Q8S7Z2_ORYSJ Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNBa0015O22.11 PE=4 SV=1
--RSIVEHRLPTEPGVRPHQQPPRRCKADMLEPVKAEIKCLYDASFIRRCR-YAEWVSSIVPVIKKNGKERVCIDFRDLNKATPKD---EYPMPVADQLS
GYKILSFMDGNVGYNQIFMAEEDIHKTAFRCPS-----AIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLISW----LVEVYIDDVVVKSK-EIEDHIAD
LRKVFERTRKYGLKMNPTKCAFVSAGQFLGFLVHERGIEITQRSINIKPPEDKTELQEMIGKINFVRRFISNLSLEPFTPLLRLKA--DQQSTWGAEQQK
ALDNIKEYLSSPPVLIPPQKGIPFWLYLSAG-DKSIGSVFIQKLEGKRAVVKYML----------------------SAPILKG---------RIGKWIF
SLTEF--------DLWYESQKAIANFIVDHR-DDSIVVLWTLFFDGSVCTHGCGIGLVISPRGAEFAYTIKATNNQAEYEAVLKGLQLLKDTIEIMGDSL
LVISQLAGEYEMNDTLIVELMKELVTLKHFVQEHIIYRFGIP----------------
>tr|G8XUM9|G8XUM9_COILA Retrotransposon protein OS=Coix lacryma-jobi PE=4 SV=1
--RSMIEHSLNIKTGYRPIKQKLRKMSEERKEAAKAEVKRLLDAGVIRPVK-YPSWLSNVVLVQKKNKKWRMCVDFTCLNKACPKD---DFPLPNISTLA
GCQMLSLLDCFSGYHQIWMNEEDEDKTSFITP-------SGTFCFRRMAEGLKNAGSTFARMTSEVFKDE--H----AVSAYVDDLVVQSK-LKEDHISD
LSRVFSNLRSAGLKLNPEKCVFVSEGKLLGCIVSVKGIEANPEKIDMEPPATKKAAQRLTGRLAALSRFISRSAGLPFFETLRS----NAPFNWGPHQQK
AFEELKKYLTSLTALTSPSKGDLLLLYVAAS-PHAASAVLIKELRA---VLENIF----------------------KNSEAVG---------RIAKWAV
ELNSY--------AITFVGRTVLADFIAEWT-PDPRDQLWTVYVDGAWGATGAGASAIISPSGSRYARRLDCTNNSAEYEAVILALSRLRRRAFINTDSQ
VIAGHIEKNYKKDPELQKRLESFGLAVKRFFWQQIVCRFGVP----------------
>tr|Q9ZNW4|Q9ZNW4_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1
--RDIIEHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVI-YPEWLANVVLVPKKNGKMRMCIDFTDLNKACVKD---SFPLPRIDTSA
GCQRFSLLDCFSGYHQIWLKKEDEGKASFTTP-------FGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQR----NIIAYVDDVVVMSK-RKEDHIKD
LQETFVNLRSAGLKLNPEKCVFVSKGKMLGYIISSEGIRANPDKTKMAEPSNKKEVQRLTGRIAALNRFISRSASLPFFKVLRE----G-KTEWGPEQSE
AFRQLKNYIATNLLVTVPEPDTPLLLYVAAS-EHAVSGVLVHETSD---VLGDIL----------------------RNKEASG---------RIGKWAA
ELSQF--------DITYVPRTALADFMADWT-PSNKDQPWTLYTDGAWGQAGAGAAAVIAPSGLKFAIRLEATNNIAEYEGLILGLNKAKKTLVIKTDSQ
VVAGQVEKEYLHNPELARGLERRGETIRKFFWQNIVCRFGVP----------------
>tr|Q10SF8|Q10SF8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g03250 PE=4 SV=1
--REVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVL-HPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKD---PFGLPRIDQI-
---------------------SDCLKTSFITP-------FGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYVDDVVVKTK-QKDDLILD
LEETFASIRAFRMKLNPEKCTFVPSGKLLGFMVSHRGIQANPEKVIMKPPSTQKDVQKLTGCMAALSRFISRLGGMPFFKLLKK----TDDFQWGPEAQK
AFEDFKKLLTEPPVLASPHPQEPLLLYVSAT-SQVVSTVLVVEREE---VLGDIL----------------------HNREANG---------RIAKWAL
ELMSL--------DISFKPRIALADFVAEWT-ECQEMEHWTMHFDGSKRLSGTGAGVVISPTGESYVLWIHTSHNVAEYEALLHGLRIAIKRLIVRGDSQ
LVVNQVMKEWSLDDNMMAKLEDKGDNARDFF-INIVHRFGVP----------------
>tr|Q65X63|Q65X63_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OJ1123_F01.3 PE=4 SV=1
--REVIEHRLAVRPGARPVRQNVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKD---PYPLPRIDQIA
GCDLLCFLDAYSGYHQIRMAREDEEKTAFITP-------VGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGR----NVEAYVDDLVVKTR-NQETLLSD
LVETFENLRSARIKLNPDKCVFVPAGKLLGFLVSARGIEANPEKIRMRPPSKLRDVQCVTGCMAALSRFISRLGALPLFKLLKR----SGPFTWTEEAEH
ALTQLKAYLSSPPVLVAPEPNEPLLLYLAAT-PQVVSAALVVERDEDPHVLDQIL----------------------HNREGTG---------RVVKWAI
ELSEF--------DLHFEPRHALADFVAEWT-PAPETTHWVMQFDGSLSLQGAGAGVTTSPTGDRYLVRLDATNNMAEYEGLLAGLRVAARRLLVLGDSQ
LVVNQVCKEYRSDPQMDARMERHGHSALKFI-KGITARFGVP----------------
>tr|A0A087G9S1|A0A087G9S1_ARAAL Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G272900 PE=4 SV=1
-SPSITSHRLNVDPTFKPIRQKRRKLGSERAKAVNEEVTKLLDAGSITEVH-YPEWLANPVVVKKKNGSWRVCVDFTDLNKACPKD---SYPLPHIDRVA
GNELLSFMDAFSGYNQIEMHPHDREKTAFITE-------RGTYCYRVMPFGLKNAGATYQRLVNKMFAEQLGD-------------------TME-----
--------------LNPAKCTFVTSGEFLGYIVTQRGIEANPKQIALPSPKNKREVQRLSGRIAALNCFISRSTDLPFYQLLRGNK----SFAWDDKCES
AFQDLKQYLTTPPILSKPELGETLYLYVSIT-DAAVSEVLVREDRKPIFYVSKALDGAESRYPTLEKLALAVRKLRPHTIAVMSTQPLRAIPSRMARWAV
ELSEF--------DLEFRNRTVLADFVTELPESVGRSDIWNLYVDGSASRHGSGIGILVSHTGDEQSFRLGASNNEAEWEALIAGLRLARRRIHAFSDSQ
LVTNQLNHEYDARDDRMSAYLQLIDHFDSFLLSKVP----RAENSKADALASLGSS--
>tr|A0A087FWR9|A0A087FWR9_ARAAL Uncharacterized protein OS=Arabis alpina GN=AALP_AAs48547U000400 PE=4 SV=1
-DINVASHELNVDPTFKPIKQKRRKLGPDRAKAVNDEVERLLRVGSITEVK-YPDRLANPVVVKKKNGKWRVYVDFTDMNKACPKD---SFPLPHIDRLT
GNKLLTFMDAFSDYNQILMHPKDREKTAFITD-------RGIYCYKVMPFGLKNAGATYQRLVNKMFRDQLGK-------------------TMEVYIDD
MPVKFEQLNLHNMKLNPTKCRFLTSGEFLGYLVTRRGIEANPKQIDMASPRNKRESEASKSPSSMLARPSPTQKQLSIV--------------------M
ASRKLRPYFQSHTIVI-------------LS-TFP--------LRHSPSQ-------------------------------------------RLAKWAI
ELSEY--------DIEYKGRTVLADFLIELPAKEVRPGIWELHVDGSSSKNGSGVGIRASPTGEEQSFRLGASNNEAEYEAIIAGMRLAQEHVHAFCDWQ
LVSNQFSGEYATKDGRMEAYQKILLTFKEFTLTRIP----REENVDADALANLASA--
>tr|A0A087HCB2|A0A087HCB2_ARAAL Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AA3G284800 PE=4 SV=1
-DINVTSHELNVDPTFKPIKQKRRKLGPERAKAVNDEVERLLRVGSITEVK-YPDWLANPVVVKKKNGKWRVCVDFTDLNKACPKD---SFPLPHIDRLA
GNKLLTFMDAFSGYNQILMHPEDREKTAFITD-------RGCYCYKVMPFGLKNARATYQRLVNKMFQDQLGK-------------------TMEVYIDD
MLVKSNQLNLYDMKLNPTKCRFVTSGEFLGYLVTHRGIEANPKQIDMASSRNKREVQRLTGRVAALNRFISRSIDLPFYNTLRGNK----QFEWSDKCED
AFRQLKEYLATPPILAKPITGETLFLYIAIS-ETAVSAVLVHEERKPIFYVSKTLTDAETRYPQLEKLALSIRKLRPHSIVVLSTFPLRSVPSRLAKWAI
ELSEY--------DIEYRGRTVLVDFLIELPLKEVRPGTWELHVDGSSSKNGSGVGIRASPTGEEQSFRLGASNNEAEYEAIIAGMRLAQEHVHAFCDSQ
LVTSQFSGEYATKDDRMESYVKILSTFKEFTLTRIP----RGENVDADALANLASA--
>tr|Q9ZTP2|Q9ZTP2_MAIZE Prpol OS=Zea mays PE=4 SV=1
-NRDVIEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVK-YPEWLANTVMVKKANGKWRMCIDFTDLNKACPKD---EFPLPRIDSLA
SSELMSLLDCYSGYHQIWMKREDEPKTSFITP-------SGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGR-------------------NVLTYVDD
IIVKSASFRQAGLKLNPEKCVFVKKGKFLGCLVSTKGIEANPSKIEMEPPTTKKGAQRLTGRLASLNRFISRSAELPFFEVLKSAE----VFQWGPIQQK
AFEELKQYLIDLTALTPPMPGAPLLLYVAAS-HSAVSAALVQEKLVPVYFVSEVLSISKKNYTELEKVLYVVRKLRHYNIIVPSSQPLKDIRERIGKWAA
ELNEF--------CIEYVHRSALADFIADWTEENKDTEAWTVFCDGSWGTFGAGAAAVVSPSKVCYVAKLDCTNNIAEYEALLLGLRKLKRRAVLKTDSQ
VVSGHIDKSCKAKDPKLEKYLDMVASFEGFSVKNIP----RGQNEHADLLAKSAAQ--
>tr|Q7XXG9|Q7XXG9_ORYSJ OSJNBb0016B03.14 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0016B03.14 PE=4 SV=2
-STDLIMHHLVVKPNTKPKKQKLRKMSADRQEAAKAEVQKQLRAGVIQEID-HPEWLANLVLVRKSNGKWRMM---------------------------
------------------------------------------------PFGLRNVGATFARLVYKVLCKQLGR-------------------NVEAYVDD
IVVKSDNLRAAGIKLNPEKCIFVRAGKLLGFLVSERGIEANPEKIDMKPPSSVHEVKKLVGRIAALSRFLSKAAKLPFFKTLRGAG----KFNWTPECQE
AFDELKQYLQSPPALISPTPGSELLLYLAAS-PVAVSAALVQETKKPVYFISEALQGAKTRYIEMEKLAYALRKLKHHKVIVPPQYPLGEIKERLSKWAA
ELSPF--------DLHFVARTVLADFVAEWTPEELVEQLWVMSSDGSWSHKGAGIAAVISPNGVRYAARLQTTNNAAEYEAILLGLRRAKRRLLIRTDSK
LVAGHVDKSFEAKEEGMKRYLEATKCFTGITVEHLP----RGQNEEADALAKSAAC--
>tr|Q10MB8|Q10MB8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g20050 PE=4 SV=1
-------------PDAKPRKQKLRKMSADHQEAAKAEVQKLLKAGVIQEID-HPEWLANPVLVRKSNGKWCMCVDFTDLNKACPKD---DFPLPQIDQLA
GCELMSFLDAYSGYHQIHMNPADIPKTAFITP-------FGTFRHLRMPFGLRNAGATFARLVYKVLYKQLGR-------------------NVEAYVDD
IVVKSDNLPAAGMKLNPEKCVFVHAGKLLGFLVSERGIEANPEKIDMKPPSSVREVQKLAGRIAALSRFISKAAELSFFKTLRGAG----KFNWTPECQA
AFDELKQYLQSPPALISPAPGIEPLLYLAAS-LVAVSAALVQEIEKPVYFVSEELQGAKTRYIEMEKLTYALRKLKHHRVIVPSQYPLGEIKERLRKWAA
ELSPF--------DLHFVARTVLADFVAEWTPEEPVEQPWMMYSDGSWSHKGAGIAAVTSPSGVRYAARLQTTNNAAEYEAILLGLRKEKRRLLIRTDSK
LVAGHVDKFFEAKEEGMKRYLEALKYFTGITVEHLP----RGQNEEAEALAKSTAY--
>tr|Q6I5B8|Q6I5B8_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0067H15.13 PE=4 SV=1
-PADLIMHHLAVKLDIKPRKQKLRKMSADRQEAAKAEVQKLLRAGVIQEID-HPEWLVNPVLVRKSNGKWRMCVDFSDLNKAYPKD---DFPLPRIDQLA
GCELMSFLDAYSDYHQIHMNPLDIPKASFITP-------FGTFCHLRMPFGLRNAGATFARLVY-------------------------------K----
-------------V---------------------LGIEANPEKIDMKPPSSVHEVQKLAGRIAALSRFLSKAAELPFFKTLLGAG----KFDWTPECQA
TFDELKQYLQSPPALISPPPGSELLLYLAAS-PVAVSAALVQETEKPVYFVSEALQGAKTRYIEMEKLAYALCQLKHHKVIVPSQYPLGEIKERLSKWAA
ELSPF--------DLHFVARSVLADFVAEWTLDEPAEQFWVMCSDGSWSHRGAGIAAVFSPNDVRYAARLQTTNNAAEYEAVFLGLRKAKRRLLIRIDSK
LVAGHVDNSFEAKEEGMKRYLEAMKYFTGITVEHLP----RSQNEEADALAKSAAC--
>tr|Q6UUG7|Q6UUG7_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0003M24.21 PE=4 SV=1
-STDLVMHHLAAKPDAKPRKQKLRKMSADCQEAAKVEVQKLLKAGVIKEID-HPEWLANPVLVRKSKGKWRMCVDFTDLNKACPKD---DFPLPRIDQLA
GYELMSFLDAYSGYHQIHMNPADIPKTAFITP-------FGTFCHLRMPFGLRNARATFARLVYKVLYKQLGR-------------------NVEAYVDD
IVVKSDNLRVVGMKLNPEKCVFVCAGKLLGFLVYERGVEANPEKIDMRPPSSVREVQKLAGRIATLSRFLSKAAELPFFKTLRGAG----KFTWTPECQA
AFDDLKQYLQSPPTLISLAPGSELLLYLVAS-PVAVSAALVQEIEKPVYFVSEALQGAKTRYIEMEKLAYALQKLKHHKVTVPSQYPLGEVKERLSKWAA
KLSPF--------DLHFT-------------PEEPIEQPWVMYSDGSWPHKGAGVAAVTSPGGVRYVARLQTTNNTAEYEAILLGLKKAKWRLLIRTDSK
LVAGHVDKFFEAKEEGMKRYLEAKKCFAGITVEHLP----TGQNEEADALAKSAAY--
>tr|A0A087G3Z6|A0A087G3Z6_ARAAL Uncharacterized protein OS=Arabis alpina GN=AALP_AAs72716U000200 PE=4 SV=1
-DINVGSHELNVDPTFKPIKQKRRKLGLERAKAVNDKVERLLRVGSITEVK-YPDWLANPVVVKKKNGKWRVCVDFTDLSKACPKD---SFPLPHIDRLA
GNKLLSFMDAFSGYNQILMHPDDREKMAFITN-------RVFYCYKVMPFGLKNACATYQRLVNKMFENQLGK-------------------TMEVYIDD
MLVKSRQLNLHNMKLNPTKCRSVTSGEFLGYLVTHRGIKANPKMISMASPRNKREVQRLTGRVAALNRFISRSTDFPFYNMLRANK----QFEWTDKCEE
AFKQLKEYLATPRVLSKPETGEPLFMYIAVS-GTTVSAVLVREERKPIFYVSKTLTDAETRYRQLEKLALSVRKLRPHSIVILRTFSLHSVPSRLAKWTV
ELSEY--------DIEYRGRSVLADFLIELPTK---------------------EGIRTSPTGDEQSFQLGASNNEAEYEPILAGMRLAREEINVFSDSQ
LVVNQFSGEYRTKDERMEAYLGLLAQFKKFTLTRIP----RGENVNADALANLAST--
>tr|A0A061E2I6|A0A061E2I6_THECC RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Theobroma cacao GN=TCM_007834 PE=4 SV=1
---DMVVHKLPLEPDCKPIKQKLRMMKPEMLLKIKEEVKRQFDAGFLEVA-KYPEWVANIVPVPKKDGKVRMCVDYRDLNRASPKD---SFPLPHIDTLA
KHALFSFMNGFSGYNQIKMAPEDMEKTTFVTM-------WGTFCYKVMPFGLKNAGATYQRAMVALFHDMMHK----EIEVYVDDMIAKSH-TERDHTVN
LKKLFERLRKFQLKLNPAKCTFVTFGKLLGFIVSENGIEVDPDKIRLPPPKTQKEVRGFLGRLNYIARFISQLTCDPIFKLLRKR----DPGEWNEECQI
AFDKFKEYLTNPLVLMPPTVGKPLILYLTVN-KDSMGCVLGQHDERAVYYLSKKFMEYESKYSALEKMCCALAWTAQHTTWLVALDPIKYIPCLIVRWQV
LLSEY--------DIVYVSQKFLADFPDEDLMAVLELNPWKVYFDGASNALGHGIGAVLSPNGKYATARLNCTNNMAEYEALVMGLQAAADAIDVYGDST
LVICQMKGEWEKLVPY-KKLVTELSQFKEISFNHLP----REENQIADALATLAA---
>tr|A5AGD8|A5AGD8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006362 PE=4 SV=1
---SIVQHHLPILPHVRPVKQKLRRLHPRWSLQVKEEIQKQLNVGFVSVV-EYPEWLANVVPVPKKDGKVRVCVDFRDLNKASPKD---DFPLPHIDLLA
GHSMLSFMDGFSGNNQILMAPEDMEKTAFITE-------WGTYCYRVMPFGLKNAGAIYQRAATALFHDMMHK----DVEVYVDDMIVKSR-GRADHLAA
LERFFERIRKFRLRLNAKKCTFVTSGKLLGHMVSDRGIEVDPDKIKMPVPRTEKEIRGFLGRLQYISRFIARLTDEPIFRLLRKN----QPTVWNDDCQI
AFEKTKEYLLSPPVLVPPMPRRPLLLHLSVS-DMALGCMLAQLDDRAIYYLSKRMLEYEMRYVMIERLCLALAWATRYSVCLISLDPLRYLPALLMRWLV
LLTEF--------DIQYVYQKHLADFPDEEFIAMTSLSGWRMYFDGAANQLGFGIGVLLSSQGDHRSVRLVATNNIVEYEACILGLETAIRQMEVFGDSN
LVLRQIQGDWKKLRSY-HAYLELLVRFDDLRYTRLP----RAQNQFADALATLAS---
>tr|Q9AXC3|Q9AXC3_ANTHI Putative uncharacterized protein OS=Antirrhinum hispanicum PE=4 SV=1
---KMVEHYIDVRPDAKPVQQKRHKMGPERNKVIKSEIQRLIGLNQIREVQ-YPEWLANVVLVPKSGGRWRMFIDFTDLNDACPKD---CFPLPSIDQLA
GCALLSTMDGNQGYNQIPMAERDQEKTSFITD-------FGTYCYLVMPFGLKNAGTTYQRLMNAMFSPMIGD----NLEVYVDDIVAKCK-EASQHNAD
LIEAFQIMEKFGLKVNLRKCSFGQGGKFLGFLVTQRGIKVNPEKSKMPPPQTIRDVQRLTGRMASLIRFISKAAGLPFFKVLHNV----KNFQWSDECQK
AFDDLKGYLLCPPPLVKPQQGERLYVYLAVR-KEVVSAVLARAEGLPIYYTSRTLKDAKTRYSLIEKFAFALQKLRSHPITILTKHPLRAIPQRMVKWAV
ELGEY--------DIHYAPRPVLADFMIETNAEEPTADLWKAYVDGSSSSGSGGAGINFLKPEESFAVKIGVSNNEAEYEALLIGMRLAKERVHFHNDSQ
LIPRAENEEAD-----------------------------------------------
>tr|A0A0L9UG54|A0A0L9UG54_PHAAN Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g188900 PE=4 SV=1
---AVMSHKLSLFQNARPVAQKKRRMGEEKRKAVEEEVEKLRRAGFVRAVT-YTTWLANVVMVKKANGKWRMCTDYTDLNKACPKD---SHPLPSIDALS
GHRVLSFLDAYFGYNQIPMYGPDIEKTAFITE-------KANFCYEVMPFGLKNAGATYQRLMDRIFRDQIGR----CMDVYVDDMVVRSA-DVEGHLKD
LEEVFRQVRKFGMRLNPAKCTFGAAGKFLGFMLTSRGIEANSDKCDMQSPATLKEVQRLVGRLTALSRFIPKLAMRPVLRKLKKG----TGPSWDDECER
AFQDVRTLLSNPPVMSRPVPGGDLHIFLGVS-ETAVSAVLMQERPRLVYFVSRTLLDAETRYQRVEKVALALKRLRPYQVIVRTDFPISKIPDRMVAWAV
ELSEF--------GLRYEPRGHLADFAAELP--PSGQDDWNLYVDGASGRSISGAGIVLGPNGFEHSLIFKVSNNQAEYEALVAGLELAKDRITCRTDSE
LVVGQMNTRAD-----------------------------------------------
>tr|A0A061EHA6|A0A061EHA6_THECC Uncharacterized protein OS=Theobroma cacao GN=TCM_018974 PE=4 SV=1
--TDIVVHKLPLGPNCKPIKQKLRRMKPEMLLKIKEEVKKQFDAGFLEMA-KYPECVANIVSVPKKDGKVRMCVDYRDLNRASPKD---SFPLPHIDTLA
KHALFSFMDDFSGYNQIKMTPEDMEKTRFVTM-------WRTFCYKVMPFGLKNAGATYQRAMVALFHDMMHK----EIEVYVDDMIAKSH-TERDHTVN
LKKQFERLRKFQLKLNPAKCTFVTSGKLLGFIVSEKGIEVDPDKILLPPPKTQKEKERAVYFMEYESKYSALEKCALAWTVQRLR----QYM----LYHT
TWLVAKLDPIKYIFEKPCLFGRIARWQVLLS-EYDIVYV-SQK-----------S--------------------------IKGS----AIADFLADQAN
KDYES--VSFNFSDEDLMAVL-------H-IENDGNLNPWKMYFDGASNALGHEIGAVISPNGKYATARLNCTNNMAEYEALVMGLQAAADAIDVYGDSA
LVICQVRGEWETRDSKYKKLVTELKQFKEISFNHLPR----EENQIVDALATLTAM--
>tr|A0A0K9QC01|A0A0K9QC01_SPIOL Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_196320 PE=4 SV=1
-------------------------MKPDVSLKIREEVSKMLEAGFIREA-KYPEWIANVVPVPKKDGKIRMCVDYRDLNRASPKD---DFPWPCIDILA
NHALLSFMDGYAGYNHITMAEEDMEKTTFITQ-------WGTYCYTVMPFGLKNAGATYQRIATSIMSDMIHR----EIEVYVDDMIVKSK-EQHEDTTV
LRKFFNRLRQYNMRLNPQKCAFVTSGKLLGYVISSQGIEADPSKIKMKPPANEKEIWGFLSKLQYISRFISKLTCEPIFRKLRKS----EPKVWDEDSQH
AFDTIKADPLKYIFEKPALNGQLSRWLVM--LEFDLKYI-PQK-----------S--------------------------IKGS----AVSDFLANSPI
EA-EV--EDYDLPDVQIL-----------------TDDSWSLHFDGASNQNGCGVGVIVAPDETHMSAKLQVTNNAVEYEACIMGLEAAVQKLLLYWDSS
LIINQIFEKWKVRSKIYQSYLEKMEQVEELRYTYLPR----EENQFADALEKQASI--
>tr|Q8SAA8|Q8SAA8_SORBI Putative GAG-POL-orf2 protein OS=Sorghum bicolor GN=SB45I19.11 PE=4 SV=1
--RNLIEHSLNVSKTARPIKQKLRRFARDKKEAIRTEITRLLAAGFIKEV-YHPDWLANPVLVRKKNNEWRMCVDYTDLNKHCPKD---PFGLPRIDEVA
GCELLSFLDCYSGYHQISLKEDDQVKTSCITP-------FGAYCYTTMSFGLKNAGATYQRAIQQCLYDEIRDD---LVEAYVDDVVVKTR-DAGTLIDN
LDPTFKALNKYKWKLNPKKCIFAPSGLLLGNVVSRDGIRPNTSKVKMRPPRNVKDIQKLTGCMAALSRFISRLGGLPFFKLLKAS----EKFSWTEEADA
AFTQLKTFLTSPPVLAAPQPNEDLLLYIAATDDSKTRCPQFDG-----------HRVLVTTSFPLGDILCPFSLDFQSRTTVKSQ----ALVDFIAKWTD
L-----------------------------NEPSVNPDHWSMFFDGSLNINGAGAGILVSPNKDKYVLRILASNNVAEYEACLHGIRLAVKRLYVHGDSA
LVINQLNKEWDTTHEKYCKEIRKWSNFYGIEYIHVVR----DKNQAADALSKLGSS--
>tr|Q2R4E0|Q2R4E0_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g28810 PE=4 SV=1
--REVIEHSLHVKEDAKPIKQRLRRFAQDRKDVIKEELTKLLAAGFIKEV-LHPDWLANPVLVRKKTGQWRMCVDYTDFNKSCPKD---PFGFPRIDQVA
GCELLSFLDCYSGYHQIRLKESDCLKTSFITP-------FGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYVDDVVVKTK-QKDDLITD
LEETFASIRAFRMKLNPEKCIFVPSGKLLGFMVSHRGIQANPEKLNMKPPSSQKDVQKLTGCMAALSRFVSRLSGMPFLKLLKKT----DNFQWRPEAQK
AFQDFKKLLTTPPVLASPHLQEPLLLYVSATSDSKTRYPQFQG-----------HSVTVVTSFPLGDILMSLDISFKPQTSIKSQ----ALPDFVAEWTE
C-----------------------------QEDMPEIEYWTMHFDESKRLSGTGAGVVISRTGERYILWIHASHNVAEYEALLHGLRIAIRRLIIRGDSQ
LVVNQVMKEWSFLDDNYR----------------------------------------
>tr|A0A077CWQ8|A0A077CWQ8_9FABA Pol polyprotein (Fragment) OS=Trifolium pallescens PE=4 SV=1
--RKLVEHELPVRPDKKPVKQLPRRFAPEIMSKIKEEIERLLRSKFIRTA-RYVEWLANIVPVIKKNGSLRVCIDFRDLNNATPKD---EYPMPVAEMLA
GFEYLSMLDGYSGYNQIFIAENDVPKTAFRCA-------LGTYEWVVMPFGLKNAGATYQRAMNLIFHEYIDT----FMQVYIDDIVVKSS-SDDDHLDH
LKKSFEKMRKYGLKMNPLKCAFVNAGDFLGFVVHKKGIEINQNKTKTKSPTTKKQLQSLLGKINFLRRFISNLSAQPFSPLLKKE----STFTWGQDQQQ
AFDEIKNYLSKPPMLMPPIRNKFMKLYISASDDAETRYSSIKP-----------VDVLVYSHCDIIKHLTEYSLTYKPLKAVKGQ----IVADFIVDHYA
L-----------------------------ETPQNVLEPWKLYFDGSKHKHGVGIGILISPSKIPFKYKINCSNNEAEYEALITGLEILAKKILIRGDSE
LVLKQLTKEYKCIKEHYFVIAISLKRFDQVIFEHVPR----IENQEANDLAQIASG--
>tr|Q9Q1X4|Q9Q1X4_9GAMR Type C proviral gag, pol and env genesand LTR (class A, clone 42) OS=Porcine endogenous retrovirus PE=4 SV=1
--KQVPPQVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQGILVPV--QSPWNTPLLPVRKPGNDYRPVQDLREVNKRVQDIH---PTVPNPYNLP
ERNWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGT-GRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFKIQHPQVTLLQYVDDLLLAGA-TKQDCLEG
TKALLLELSDLGYRASAKKAQIRREVTYLGYSLRGGQRLTEARKVQIPAPTTAKQVREFLGTAGFCRLWIPGFAAAPLYPLTKEK----GEFSWAPEHQK
AFDAIKKALLSAPALALPDVTKPFTLYVDER-KGVARGVLTQTLGRPVAYLSKKLDPVASGWPVCLKAIAAVAILVKDADKLLGQNITVIAPHALDRWMT
NARMTHYQSLLLERVTFAPPCHLITGVRKDLTDIPLTGVLTWFTDGSSYVEGKRMAGVVDGTRTIWASSLPTSAQKAELMALTQALRLAEKSINIYTDSR
YAFATAHVREIKNKEEILSLLEALHLPKRLAIIHCPGHQKSRGNQMADRVAKQAAQ--
>tr|A5B6Y5|A5B6Y5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008801 PE=4 SV=1
---SIVQHRLPLLPQARPIKQKLRRLHPRWSLQVKEEIQKQLSVGFLSVV-EYPEWLANVVPVPKKDGKVRVCVDFRDLNKASPKD---DFPLPHIDMLA
GHSMLSFMDGFSGYSQILMAPEDMEKTSFITE-------WGTYCYRVMPFGLKNAGATYQRAATTLFHDMMHR----DVEVYVDDMIVKSR-DRSDHLAA
LERFFERIRQFRLRLNPKKCTFVTSGKLLGYMVSERGIEVDPDKIRMPAPRTEREVRGFLGRLQYISRFIARLTCEPIFRLLRKS----QPTVWDDQCQR
AFERIREYLLSPPVLAPPTPGRPLLLYLSVS-DVALGCMLAQLDDRAIYYLSKRMLDYETRYVMIERYCLALVWATRYSVHLISRDPLRYLPALLMRWLV
LLTEF--------DIHYVTQKHLASLPV--SDARAIDSGWRMYFDGAANHSGYGIGVLLSPHGDHRSVRLAATNNIVEYEACILGLETAIGQMEVFGDSN
LVLRQIQGEWKRDVKLKHAYLELLGRFDDLRYTHLP----RAQNQFADALATLAS---
>tr|A5AJF9|A5AJF9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038551 PE=4 SV=1
---------------------------------YSEEIQKQLGVGFISMV-EYLEWLANIVPVPKNDGKVRVCVNFKDLNKASPKD---DFPLTHIDLLA
DHSMLSFMDGFLGYNQILMALEDMEKTTFITQ-------WGTYYYKVMPFGLKNAGATYQRVATTLFHDMMHR----DVEVYKDDMIVKSQ-GKANHLAA
LERFFERIQKFILRLNPKKCTFVTYGKLLGHMVNERGIEVDPDKIKMPVLRTEKKIRGFLGRLHYISRFMAKLTCESIFRLLRKN----QLTVWNDAFXL
ASXKIKEYLLSSPVLVPPMLRCPLLLYLSVL-DMALGCILAXLDDRAIYYLSKRMLEYEMRYVMIKRLYLSLGWATRYLVHLISRDLLRYLPALLMRWLV
LLTEF--------DIQYVSQKHLASLXI--YEDKPID----------------------------------AMNNIVEYETCILGPETAIRQMKVFGDSN
LVLKQIKGNWRKDVKLRHAYLEWYFSK---RRLLTG----WAQNEFADVLATLAS---
>tr|A5BZW6|A5BZW6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019943 PE=4 SV=1
---SIVQHHFPTLPHARPVKQKLRQLHPRWSLQVKEEIQKQFSVGFISVV-EYPEWLANIVPIPKNDGKVRVCVDFKDLNKASPKD---DFPFPHIDLLA
DHLMLSFMDGFSGYNQILMAQEDMEKTTFIIE-------WGTYCYRVMSFGLKNAGATYQRAATTLFHDMMHR----DVKVYVDDMIVKSQ-GRAYHLET
LERFFERIRKFRLRLNPKKCTFVTSGKLLGHMVSERGIEVDPDKVKMLAPKTKKEIMGFLGRLQYINCFIARLICEPIFRFLRKN----QPTVWNDDFQL
AFENIKEYLLSPPVLVPLMLGHPLLLYLSIL-DMALGCMLAQIDDQAIYYLSKRMLEYEMRYVMIERLCLALVWVTRYSVHLISRDSLRYLPAL------
--TEF--------DIQYVSQKHLASLST--SEDRPVDLGWCMYFDSATNQLGYGIGVLLSPQGDHRSICLEITNNIVEYEACILVLETAIGQMEVFGDSN
LVLCEFRIT---PCGMRSSWLQKA-----------------------------SS---
>tr|Q6UUM8|Q6UUM8_ORYSJ Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0095C12.17 PE=4 SV=1
----VIEHKLMVRPDAKPVKQKLRIFAPYRKQAIREELDKLLKAGFIREVL-HPEWLANPVMVWKANGKWRMCVDFTDLNKACPKDH---FPLPRIDQLA
GCELLSFLDAYSGYHQISMAKEDEEKTAFITP-------FG-----------------------GALSNQLGN----NVEAYVDDIVVKTK-TSDSLIDD
LRETFDNLRRYRLMLNPEKCTFVPSGKLLDFLVSGRGIEATPEKIKMKSPTRLKEVQKLTGCMAALSRFVARMGGQPFFALLKKQ----DKFIWTQEAEE
AFIALKRYLSNPPVLVAHQPNEELFLYIVAT-PYSVSTVIVVERERPVYYVNEALHDTKTRYPQIQKLLYAVRKLRHHRVTVVSSFPLAIKSQVLADFVA
DWTMP----------------------DNRLDNQIKNETWTMAFDGALNSQGAGAGFILSPFGDNHAIHLNATNNTAEYEGLLAGITLRVRRLIVKGDSE
LVTNQVHKDYKCS---------------------------------------------
>tr|Q7XK85|Q7XK85_ORYSJ B1159F04.3 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0046K02.14 PE=4 SV=2
------MYHLAVKPDAKPRKEKLRKMSADRQEAAKAEVEKLLKAGVIQEID-HPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDD---FLLPRIDQLA
GCELMSFLDVYSGYHQIHMNPADIPKTAFITP-------FGTFCHLRMPFGLRNAGATFVRLVYKVLYKQLGR----NVEAYVDDIVVKSR-KAFDHAFD
LQETFDNLRAAGMKLNPEKCAFVRVGRLLGFLVSERGIEANPEKIDMRPPSSVREVQKLEGRIAALSRFLSKAAGLPFFKTLQGA----GKFSWTTECQA
AFDELKQYLQSPPALVSLALGSELLLYLAAS-PVAVSAVLVQEKEKPVYFVSEALQGAKTRYIEMEKLAYALRKLKHHKVTML------IKSQVLADFVA
EWTPA----------------------F-ALEPQPVEQPWVMHSDGSCSHKGAGAVAVLSPGGMRYATRLQTTNNTAEYEAVLLGLALGVWRLLIRTDSK
LVASHVDKSFEAK---------------------------------------------
>tr|A5BSA5|A5BSA5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038223 PE=4 SV=1
----IASHRLNVSPTARPVRQKIRRFHPNRQKVIRIEIDKLLEAGFIREVD-YPEWLANVVVVPKKEGKWWVCVDYTNLNNACPKDS---FPLPRIDQIT
GQGMLSFLDAFFGYHQIPMSPDDEEKTAFITP-------HGLYYYKVMSFRLKNAGATYQRLMTKIFKPLIGH----TVEVYIDDIV-------------
----------YDMKLNPSKCAFVSAGKFLGFMVSQRGIEVSSDQVKTPPPRNKKELQRLTGKLVALGRFIARFTLRPFFLVIRKA----GTSGWTDNCQN
AFEKIKRSLMQPPILSSPIPKEKLYMYLAVS-EWAISAVLFRLSPKSIYYVSRALADVETRYSKMELTALALQKLRHHPVIVLTDQPLRMKGQVMADFVL
EYSQR----------------------PSQSQKQNEKEWWTLWVDGASRSSGSGVGLLLSPTGEEQAIRLGASNNEAEYEAILSGLALSISKLKVYSDSQ
LIVRHVQKEYEAK---------------------------------------------
>tr|A5AZM2|A5AZM2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022900 PE=4 SV=1
----IASHKLNVFSTTRPVRQKIRRFHPDKQKIIRNEIDKLLEAGFVKEVD-YPDWLANVVVVPKKKGKWRVCVDYTNLNNACPKDS---FPLPRIDQI-
----------------IPMSLDDEEKTAFITP-------HGLYCYRVMPFGLKSAGATYQRLMTKIFKPLIGH----TVEVYIDDIVVKSK-TREEHVLH
LQEVFHLLRKYDMKLNPSKCAFVSAGKFLGFMVSQRGIEVSPDQVKTSPPKSKKELQRLTGKLVALGRFIARFTLRPFFLIIRKA----GANGWTDSCQN
AFENIKHCLMQPPILSSLIPKEKLYI-----------AILFRPSPKPIYYVSRALADVETRYSKMELTALALQKLCPHPVIVLTNQPLRMKGQVMADFVL
EYSQR----------------------PSQHQESSEQEWWTLRVDGASRSSGSGVRLLLSPTGEEQAIRLGASNNEAEYEAILSGLALSVSKLRIYSDSQ
LVVRHVQKEYEAK---------------------------------------------
>tr|Q2QR22|Q2QR22_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g29070 PE=4 SV=1
-SRSIVEHRLPIKPGVRPHQQPPRRCKADMLEPVKAKIQCLYDAGFIRPCR-YAEWISSIVPVIKKNGKVRVCIDFRDLNKATPKD---EYPMPVADQLS
GHKILSFMDGNAGYNQIFMAEEDIHKTTFRCP-----GAIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLIG----WLVEVYIDDVVVKSK-QIEDHIAD
LRNVFERTRKYGLKMNPTKCAFVSAGLFLGFLVHERGIEITQRSIKIKPPEDKTELQEMIGKINFVRRFISNLSLEPFTSLLRLK--ANQQFTWGAEQQK
ALDSIKEYLSSPPVLISTQKGVPFWLYLLA-GEKSIGSVLIQELERVVFYLSRRLLDAETRYSSVEKLCLCLYFSCTRRHYLLSNECTKYMPILVGKWIF
SLSEF--------DLRYESPKAIADFIVDYR-DDSIGSPWALFFDGSVCAHGCGIGLVISPRGACFAYTIKATNNQAEYEAVLKGLQLLKDAIEIMGDSL
LVISQLAGEYEKNDTLMNEKWQLMKTFRLVTLKHVSREQNVEANDLAQG---------
>tr|Q8LM74|Q8LM74_ORYSJ Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNAa0082N11.16 PE=4 SV=1
-SRSIVEHRLPIKTGVRPYQQPPRRCKADMLEAVKAEVARLYDADFIRPCR-YAEWVSNMVPVIKKNGKVRVCIDFRDLNKATLKD---EYPMSVADQLS
GHKILNFMDGNAGYNQIFMVEEDIHKTAFRCP-----GAIGLFEWVVMTFGLKRAGATYQRAMNYIFHDLIG----WLVEVYVDDVVVKSK-EIENHIAN
LRKVFERTRKYGLKMNPTKCAFVSARQFLGFLVHERGIEVTQRSIKIQPPEDKKKLQELIGKVNFVRRFNSNLSLEPFTLLLRLK--ADQEFTWGAEQQK
ALDNIKEYLSSPPVLIPPQKGIPFRLYLSA----------------------------ETRYSPVEKLCLCLYFSCTKRHYPLFNECTKYMPILVGKWIF
ALTEF--------DLRYESPKAIADFIVDHR-DDSIGSPWTLFFDGSVCTHGCGIGLVISPRGASFAYTIKATNNQAEYEAVLKGLQLLKDAVEIMGDSL
LVISQLAGQYEKNDTLMNEKCRLMDGFRLVTLKHVSREQNIEANDLAQG---------
>tr|Q60DE6|Q60DE6_ORYSJ Reverse transcriptase (RNA-dependent DNA polymerase) domian containing protein OS=Oryza sativa subsp. japonica GN=OSJNBb0013C14
--------------GVRPHQQPPRRCKADTLEPVKAEIKRLYDASFIRPCR-YDEWVSSIVPVIKKNGKVRVCIDFRNLNKATPKD---EYPMPVADQLS
GHK-------------IFMAEEDIHKIAFRCP-----GAIGLFEWVVMTFGLKSAGATYQRDMNYIYHDLID----WLVEVYIGDVVVKSK-EIEDHIAD
LRKIFERTRKYGLKMNPTKCAFVSAGQFLGFLVHERGIEDPQARRPLLSPLSSPPLQPCVAVARLVRPSIVSVDSTA----VVVK--------------P
IFSAAFSSTPSPSVDLPPPFWSPIPTFPESPQEKNLRSSKYNPLSGALWWICRYCHSSFPRYRGHGDMLWGCVLWVQWRHYLLSNECTKYMPILVGKWIF
SLTEF--------DLQYGSPKAIADFTVEHR-DDSIGSPWTLLFDGSVYTHGCGIGLVISPRGACFAYTIKATNNQAEYEAVLKGLQLFKDAIEIMGDSL
LVISQLTREYEKNDTLM-----------------------------------------
>tr|Q2R2X8|Q2R2X8_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g34290 PE=4 SV=1
-SQSIVEHRLPIKPGVKPHQQPPRRCKADMLEPVKAEIQRLYDAGFIRPCR-YAEWISSIVPVIKTNGKVRVCIDFRDLNKATPKD---EYPMPVADQLS
GHKILSFMDGNAGYNQIFMAEEDIHKTAFRCP-----GAIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLIG----WLVEVYIDDVVVKSK-EIEDHIAD
LRKVFERTRKYGLKMNPTKCAFVSAGQFLGFLVHERGIEITQRSIKIKPLEDKTELQEMIGKINFVRRLISNLSLEPFTPLLRLK--ADEQFTWGAEQQK
ALDNIKEYLSSPPVLIPPQKGVPFRLYLSA-GILDGSDELFETSSSGVGEKRARLSTTHCTQQVIPEEEQGEELQGVTRHYLLSNECTKYMPILVGKWIF
SLTEF--------DLRYESPKAIANFIVDYR-DDSIGSPWTLFFNGSVCTHGCGIGLVISPRGACFAYTIKATNNQAEYETVLKGLQLLKDAIEIMGDSL
LVISQLAGEYEKDDTLINEKCQLMKEFRLVTLKHVSREQNIEANDLAQE---------
>tr|Q10I05|Q10I05_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g37194 PE=4 SV=1
-SQSIVEHQLPIKPGVRPHQQPPRRCKADMLEPVKAEIKRLDDAGFIRPCR-YAEWVSSIVPVIKQTARCPGAIGLFEWVVMTFGL---KSAGATYQ---
------------------------------------------------------------RAMNYIYHDLIG----WLVEVYIDDVVVKSK-EIEDHIAD
LRKVFERTRKYGLKMNPTKCAFVSTGQFLGFLVHERGIEVTQRSVKIQPPENKTELQEMIGKIKFVRRFISNLSLEPFTPLLRLK--ADQQFTWRAEQHK
ALDDIKEYLSSPPVLIPPQKRE---------------------FERVVFYLSRRLLDAET-----------------RRHYLLSNECTKYMPILVGKWIF
SLTEF--------DLPYESPKAIADFIVEHR-DDSIGSPWTLFFDGSVCTHGCGIGLVISPRGASFAYTIKATNNQAEYEAVLKGLQLLKDAVEIMGDSL
LVISQLAGEYEKNDTLMNEKCQLIKEFRLVTLKHVSREQNIEANDLAQG---------
>tr|Q2R0G5|Q2R0G5_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g42630 PE=4 SV=1
-SRSIVEHRLPIKQGYRPFKQAPWRFKADMHEAIKAEITRLYDANFIRPCR-YAEWVPNIVPVLKKNGKLRVCVDFRDLNKATPKD---EYPMPLVDLLS
GHKIISFMDGNAGYNQIFMAKEDIHKTAFRCP-----GAIGLYEWVVMTFGLKNAGATYQRAMNYIFHDLIG----SLIEVYIDDVVVKSR-EHDMHLAD
LRKVLERARKYGLKLNPNKCAFVSAGQFLGFLVHERGIEITQKNIKIKPPENKTKLQSLLGKINFVRRFISNLSIEPFTPLLKIK--DDEEFIWGDKQQK
ALDDIKEYLTFPPVLIPPQKGVPFKLYLSA-DEKSIGSVLVQDVNRAIFYLSRRMLDAE-------------------RHYLLSNECIKYMPVLVGKWIF
ALTEF--------DLRYESAKALADFIVQHR-DDSVAYPWTLYFDGSVCRHGCCIGLVISPRGASFAFTIKYTNNQAEYEAVLKGFQLLQDAVEIIGDSQ
LVISQLSGEYERDDILKNEECKLLHGFRIVMMRHIPRKQNFEANDLAQG---------
>tr|A5BZS3|A5BZS3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003754 PE=4 SV=1
---SIVQHRLPLLPHVRPVKQKLRRLHPRWSLQVNEEIQKQLSVGCLSVVE-YPEWLANVVPVPKKDDKVRVYVDFRDLNKASPKD---DFPLPHIDMLT
GHSMLSFMDRFFGYNQIPMALEDMEKTSFITE-------WATYXYRVMLFGLKNVRSTYQRAXTTLFHDMMHH----DVEVYVDEMIVKSR-DRVDHLVA
LERFFERIRQFILRLNPKKCTFVISGKLLGYMVGERGIKADPDKIIMPASMTEREIRGFLGRLQYISRFIAILIYEPIFRLLRKS----QPTVWDDKCQH
AFERIKEYLLSPPVLLPPTPGCXLLLYLSXS-D---------------------------------RYYLALVWATRYSMHLISRDPLRYLPALLIRWLV
LLTEF--------DIHYVTQKQLALLPV--SDGRAIDS-----------------GVLLSPHGDHRSXRLAATNNIVEYEACILGLVITFDH-----QSN
PRLRVLWNPWQ------------------------P----DAQ-------SSLE----
>tr|A5B2N4|A5B2N4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029768 PE=4 SV=1
---SIVQHHLPTLPHAIRVKQKLRQLHPCWSLQVKEEIQKQLSVGFISVVE-YPEWLANVVPVPKKDGKVRVCVDFRDLNKANPKD---DFPLPHIDLLV
GHLMLSFMDGFSGYNQILMAPEDMEKTAFITE-------WGTYCYRVMPFGLKNAGATYQRAATTLFHDMMHR----DVEVYVDDMIVKSR-GRANHLDA
LERFFKRIRKFRLRLNPKKCTFVTSGKLLGHMVSEQGIEVDPDKIKMPAPKTEKEIRSFLGRLQYINRFIARLICEPIFRLLRKN----QPTVWNDDCQF
AFEKIKEYLLSPPILVPPMPGRPLLLYLSVS-DMALGCMLAQIDDRAIYYLSKRMLEYEIRYVMIERLCLALVWATRYSVHLISCDPLRYLPALLMRWLI
LLIEF--------DIQYVSQKHLASLPT--SEDRPVDSGWCLYFDGVANQLGYGIGVLLSPQGDHRSVRLAIMNNIVEYEACILGLESAIRQMEVFGDSN
LVLRQIQGDWKKLRPYHA-YLELLARFDDLRYVHLP----RAQNRFADALATLA----
>tr|A5BD78|A5BD78_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037609 PE=4 SV=1
---SIVQHHLPILPHARPVKQKLRRLHPRWSLQVKEDIKKQLSVGFISVVE-YPEWLANVVPVPKKDGKVRVCVDFRDLNKASPKD---DFPLPHIDLLA
GHSMLSFMDGFLGYNQILMAPEDMEKTTFITE-------VG------------------------------------DIEVYVDDMIVKSQ-GRAYHLEA
LERFFERIRKFRLRLNRKKCTFVTFGKLLGHMVSERGIEVDSDKIKMPTPKTEKEIRGFLGRLQYISRFIARLTCEPIFRLLRKN----QPTVWSDDCQL
AFEKIKGYLLSPPVLVPPTPGRXLLLYXSVS-DMALGCMLAQIDDRAIYYLSKRMLEYEVKYVMIERLCLAPVWATRYSXHLISRDPLRYLPALLXKXLV
LLTEF--------DIQYVSQKHLASLPT--SEDRLVDSGWCMSFDGAANQSGYGIGVLLSLQGDHRSVRLTATNNIVEYEACILGLEIAIRQMEVFGDSN
LVLRQIQGDWKKLRXYHA-YLELLARFDDLRYVHLP----XARTRFADALATLV----
>tr|A0A015LAK4|A0A015LAK4_9GLOM Gag-pol fusion protein OS=Rhizophagus irregularis DAOM 197198w GN=RirG_030470 PE=4 SV=1
-------HEIKLQPGTEPTFNKIYPQNPVQDKALQEYLDDMLRKGYIRPS--ESPAGHPILWVPKKNGKLRPCIDYRPLNKITIKN---RYPLPLMTEVG
KARWFTTLDLKGAYNLIRMKEGHEWMTAFRTT-------RGHFEYLVMPFGLTNAPATFQTMIDTVLRKQIG----VFVVVYLDDILIYSN-TLEEHRQH
VHEVLQTLQDNKLLVEAAKCKFQNSVQFLGFMITHGEIQMCQDKIEWPTPTNLKDVRAFTAFVNFYRKFLKGYGSRPLTDLTKKD----VGFKWTKEERK
SFETIKELVTQEPVMKTPDPERPYELETDAS-DYALGGQLGQRDDHPVAFFSQKLHGPELNYGIHDKELMAIIQCFKWRHYLVGANHKIKVNKRQIRWYE
TLTDYDFEIIYRKGSENGRADALSRRE--DLKEEQVDNALRTTKDRNLVLGTREISMTW-----------------------------------------
----------------------------------------------------------
>tr|A0A087H1E2|A0A087H1E2_ARAAL Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G058000 PE=4 SV=1
---AITSHELHVDPTYKPIKQKRRKLGYERARAVNEEVTKLLEAGSITEV-QYPEWLANPVVVKKKNGKWRVCIDFTDLNKACPKD---SFPLPHIDRVT
GNELLSFMDAFSGYNQIAMHPDDREKTSFITD-------RGTFCYRVMPFGLKNAGATYQRLVNKMFADQLGD----TMEVYIDDMLVKSQ-NATDHVGH
LRDCFKILNEYGMKLNPNKCTFVTSGEFLGYIVTQRGIEANPKQIDLPSPKNKRE-------------------------LLRGN----KTFVWDDKCEA
AFNELKAYLTTPPVLSKPEHGETLYLYVSVT-NAAVSGVLVREDRKPIFYVSKSLDRAESWYPTLEKLALAIVKLRPHTIAVMSAQPLRTIPSRMAKWAV
ELSEY--------DIEYRNRTALADFLIELPEAIPISQDWSLYIDGSASRHGCGAGILISLNNEEQCFRLKATNNEAEWEALIAGLRLAKERVHAYSDSQ
LVTNQLNHDYDARDERMNALTEALISNDSFVITNIPR----SENFAADALASLA----
>tr|Q7G4H3|Q7G4H3_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g11920 PE=4 SV=1
----------------------------DRKDTIKEELPKLLAAGFIKEVL-HPDWLANSILVQKKTGQWRMCVDYTNFSKSCPKD---PFGLPRIDQVA
GCELLSFLDCYSGYHQIRLKESDCLKTLFITP-------FGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYLDDVVVKTK-QKDDLITD
LEETFASIRAFRMKLNPEKCIFVPLGKLLGFMVSHRGIQANPQKINMEPPSSQKDVQKLIGCMAALSRFVSRLGEMPFFKLLKKT----DSFQWGPEAQK
AFEDFKKLLTTPPVLASPHPQEPLLLYVSVT-SQVVLA------------------DSKTRYPQIQKLLYGVLITIR-----------------------
KLSHYFQ------GH----SV-------TVVTSFP--------------LG------------D-ILHNREANGRIAKWALELMSLDISFQALADFVAEW
TECQEVMKQWSCLDDNMTAYRQEVRKFVGLELTHVLRH----NNEAADRLANFGSKRE
>tr|Q7XQ41|Q7XQ41_ORYSJ OSJNBa0032I19.13 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0032I19.13 PE=4 SV=2
----------------------------DKTVKIGAILSELALITFLRDN--------------ADVFAWQPSDMPGVPREACPKD---HFPLARIDQLA
GCELLSFLDAYSGYHQISMAKEDEEKTTFITP-------FGVFCYVKMPFELITAGNTFQRTVQGALSDQLGN----NVEAYVDDIVVKIK-TCDSLIDD
LRETFDNLRRYHLMLNREKCTFVPSGKLLGFLVSGRGIEANPEKIKMKSPTRLKEVQKLIGCMAALSRFVARMGEQPFLALLKKQ----DKFVWTQEAEE
AFVALKRYLSNPPVLVAPQPNEELFLYIAAT-PYSVSTIIVVEREKVVYYVSEALHDAKTRYPQIQKLLYAVIMTSR-----------------------
KLRHYFQ------AH----RV-------TVVSSFPLGEVVRNTWTMAFD--------------D-QFKHVRVTNNTAEYEGLLARIRAAAKRLIVKGASE
LVANQVHKDYKCSNPELSKYLVEVRRFDGIEVRHVYRK----DNIELDDLARRASRQE
>tr|Q6AVB9|Q6AVB9_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OJ1212_C10.11 PE=4 SV=1
----------------------------DHQEAAKTEVQKLLWAGVIQEID-HPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKD---DFPLPRIDQLA
GHELMSFLDAYSGYHQIHMNPLDIPKTSFITP-------FGTFCHLRMPFGLRNAGGTFARLVYKVLGKQLGR----NVQAYVDNIVVKSR-KAFDHAFD
LQETFDSLRAAGIKLNPVKCVFVRAGKLLGFLVSERGIEANPEKIDMKPPSSVHEVQKLTGRIAALSRFLSKAAELPFFKTLRGA----GKFNWTPECQA
AFDELKQYLQSPPALISPPPGSELLLYLAAS-PVAVSAALVQETESGVYFVSEALQGAKT----------------------------------------
--------------------S-------IVPSQYPLGEILRGAAVLFLPNG------------V-PIRYANTTNNAAEYEAVLLGLRKAKRRLLIRTDSK
LVAGHVDKSFEAKEKGMKRYLEAVRCFTGITVEHLPRD----QNDEADALVKSAACGG
>tr|Q7XSK8|Q7XSK8_ORYSJ OSJNBa0059D20.5 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0059D20.5 PE=4 SV=2
----------------------------DRQETAKAKVQKFLKTGVIQEID-YPEWLANRVLVQKSNGKWRMCVDFTDLNKACPKD---DFPLSRIDQLA
GCKLMSFLDAYSGYHQIHMSPADIPNTAFITL-------FGTFCHLRMPFGLRNAEANFARLVYKVLDKQLGR----NMEAYVDDIVVKSR-KAFDHRRP
S-----TTCAAGMKLKPEKCVFVRAGKLLGFLVSERGIEASSEKIDMKPLTSVHEIQKLAGRIAALSRFLSMAAELPFFKTLRGA----GKFNWTPECQA
VFDELKQYLQSPPALINLAPGSELLLYPAAL-PVAVSAALVQETESGVYFVSEALQGAKTRYIEMGKLAYALVMASR-----------------------
KLKHYLQ------AH----KV-------IVSSQYPLGKILRGLVARTAVNG------------V-PIRYADTTNNAAEYEAILLGLRKAKRRLLIRTDYK
LVAGHVDKSFGAIEEGMKRYLEAVRCFTGITVEHLPRG----YNEEADALAKSAACGG
>tr|Q8S462|Q8S462_MAIZE Putative gag-pol-orf2 OS=Zea mays GN=Z092E12.14 PE=4 SV=1
----------------------------EKRRVIGEEIHKLMAARFIKEVF-HPEWLANPVLVRKKGGKWRMCVDYTGLNKACLKV---PYPLPRIDQIA
GCETLSFLDAYSGYHQIRMKESDQLATSFITP-------FGMYCYVTMPFGLRNAGATYQRCMNHVFGEHIGR----TVEAYVDDIVVKTR-KASDLLSD
LEVTFRCLKAKGVKLNPEKCVFVPRGMLLGFIVSERGIEANPEKIAMGPIKDLKGVQRVMGCLAALSRFISRLGELPLYRLLRKA----ECFAWTPEAEE
ALGNLKALLTKAPVLVPPADGEALLVYVAAT-TQVVSAAIVVERQEEVYFISEVLSETKIRYPQVQKLLYAVILTRR-----------------------
KLRHYFE------SH----PV-------TVVSSFPLGEIIQCGLLFISPLG------------K-HLRYVPASNNVAEYEALVNGLRIAIRRLDARGDSQ
LVIDQVMKNSHCRDPKMEAYCDEVRKFFGLELNHIARR----YNETADELAKIASGRT
>tr|A0A061F6H8|A0A061F6H8_THECC Uncharacterized protein OS=Theobroma cacao GN=TCM_031483 PE=4 SV=1
------HQKVKFIVDGKIVY---VNGEEDLLIEAAEEVLECFFRSFEFVN-TTYVGEETTAPIPRLSKTVRLRIELQGIRRPKNEE---RFGLGYKEKMR
KERL-ALFKGH---------ELEIQGMTYPHL-------YETFRFGLWPSNLK--LNSWTTMSLPVTCDSISK----EVEVYVDDMIVKAR-KTEDHTTN
LERLFK---------------------------SEREIEVDPDKVQLPLPKTQKEVRGFLGRLNYIAWFISQLTLDPIFELFRKH----NPRAWNEECQV
AFDKVKEYLLSPPILVPLVAGRPLILYLTVN-EGSMGCVLGQHDERGVYYLSKKFTEYESKYFSLEKMCSALAWLKQHTTWLIAKDPIKYIPSLVARWQV
LLSEYD--------IVYVSQKPMFEFPNEDLEEESEKESWKMFFDGASNALGHGIGVLVSPEGDHVIAKLNCTNNVAEYEACVMGLQVAIEVLEVYGDSA
L------------------------------------------NQMADALTTLAA---
>tr|A0A087G2L2|A0A087G2L2_ARAAL Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs67346U000100 PE=4 SV=1
---NIASHELNVDPTFKPIKQKRRKLGLERAKAVNDEVERLLRVGSITEV-KYPDWLANPIVVKKKNGKWRVCFDFTDLNKACPKD---SFPLMHIDRLA
GNKLLSFMDAFSGYNQIMMHPDDREKTAFITD-------RGIYCYKVMPFGLKNAGATYQRLVNKMFENQLGK----TMEVYIDDMLVKSL-KEEDHVSH
LEACFQQLNLHNMKLNPTKCRFVTSDEFLGYLVTHRGIEANPKQISMASPKNKLEVQRLTGRVAALNRFISRSTCLPFYNTLRAN----KQFEWTEKCED
AFKQLKEYLATPPVLSKPENGEPLFMYTAVS-STAVGAVLVREERQKIFYVSKTLTDPETRYPQLEKLALSIRKLRPHSIIVLSTFPLRSVPSQLAKWAV
ELSEYDILADFLPEGDTLHXQVLADFLVELPEGTPQSGEWQLHIDGSSSKSGSGVGVRLSPAREEQSFQLGASINEAEYEAILAGLRLAHTEISVFSDSQ
LIVNQFSGEYATKDERMEALAKALSQFTKFTLTQIP----RGENVNADALANLAS---
>tr|A0A0N5BJJ7|A0A0N5BJJ7_STREA Uncharacterized protein OS=Strongyloides papillosus PE=4 SV=1
-----IKHEIMLKENGKLPISGVPRHSPIMQEKAYKLIQGMLKSGIIQHS--KSTCTSRYLIVPKPNGSDRFVVDYRQLNTCSYLEV---PCIPHIEDLL
QFRYLSVFDVASGFHQIPLDESSRWLTAFNSP-------WGVFEYVTTPMGLSGSPGTFQRIMDHIFSDMRS-----SILVYIDDIIVFSN-TEEKHLRI
LKEFFHRIIDSGLKLRMDKSRFVRQLKYLGFVVSIDGISPDPEKTKMTAPDNIRKLRGFLGMLNFFRRFIKDFASEPLRLLLRKD----VPFIWTDTCTA
AFETLKKCLMTAPILSAPKAEGEFLLFTDAS-YAGLGAVLFQRQPKVITYISRSINKFESNYPPIHLEALAIVWLSQLDPYIIGMPITIYTPLKLARYQL
RLMQYKATIRYQPGGENVVADYLSRHPMVSLLELPWGRKEWRYTNDEE----------------------------------------------------
----------------------------------------------------------
>tr|A0A0K0EUX6|A0A0K0EUX6_9BILA Uncharacterized protein OS=Strongyloides venezuelensis PE=4 SV=1
-----ISHTIYLKPDAKLPTAGVPRHSPKMKHTAEKIIEKMIQQGIIQPS--SSRCTSRYLLVPKPNGSDRFVVDYRQLNNHSHLEI---PCIPHIEEIL
QHKLFSVFDVASGFHQIPLHPKSRWLTAFNSP-------WGVYEYVTTPMGLSGSPGTFQKIMDNIFGDMKA-----SLLIYIDDVIIFSD-NEDDHLKT
IELFLQRIIDSGLKLRLDKSRFVREIKYLGFIISSEGIQPDPEKVRLQAPKDLRQLRGFLGMMNFFRRFIAKYATAPLRELLKKN----VAFVWSVECQS
AFRNLCTCLSTAPILSAPVAQGEFILYTDAS-YAGLGAVLLQHQPRVITYLSRSINAFEKNYPPIHLEALAIVWLAQIEHFIIGMPITIITPLKLARYQL
RLMQYQATIKYQPGPENVVADYLSRYGYVRNSRLPWEKKQTVYEDKEK----------------------------------------------------
----------------------------------------------------------
>tr|A4GTG2|A4GTG2_WDSV Gag-pro-pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=4 SV=1
----VAPITIKIKDNASLPSIRQYPLPKDKTEGLRPLISSLENQGILIKC--HSPCNTPIFPIKKAGDEYRMIHDLRAINNIVAPLTAV-VASPTLSNLA
SLHWFTVIDLSNAFFSVPIHKDSQYLFAFTFE-------GHQYTWTVLPQGFIHSPTLFSQALYQSLHKIKFKIS-SEICIYMDDVLIASK-DRDTNLKD
TAVMLQHLASEGHKVSKKKLQLQQEVVYLGQLLTPEGRKILPDRVQFQQPTTIRQIRAFLGLVGYCRHWIPEFSIKFLEKQLKKDT--AEPFQLDDQQVE
AFNKLKHAITTAPVLVVPDPAKPFQLYTSHS-EHASIAVLTQKHARPIAFLSSKFDAIESGLPPCLKACASIHRSLTADSFILGAPLIIYTTHRFSKWEA
DL--------LRPELTFVACSPHDSRPRPDLSDLPIPDPMTLFSDGSYTTGRGGAAVVMRPTDDFIIIQQPASAQTAELLALAAACHLATDTVNIYTDSR
YAYGVVHDWMHKNHKEIEYLLKQIMKPKQVSVIKIEAHTKVRGNAAADEAAKNA----
>tr|F8WL95|F8WL95_CITUN Gag-pol polyprotein OS=Citrus unshiu GN=ORF28 PE=4 SV=1
------YHKLAIRKGAMPVRQKRRCFNQERYEAINAEVEQLLKAGFIRKT-KYSEWISNVILVKKA---SRMCVDFTDLNKACPKD---SFPLQKIDQLA
GHSLLSFMDTFSGYNQIPMDEQDEESTTFITN-------IGLFCYRVMPFGLKNTGATYQRLVNKIFKPLIGH----TMEVYVDDMITKSK-KPKDHVKH
LEETFELLRKYEMKLNPEKCAFVSSGKFLGFLVSHRRIKVNPAKIRIKSLRTVKEVQSFTGKLAALNRFISRR-----------------KMEWTSECEE
AFGQLKEYLARAPLLSTPREGDQLYLYLAIS-KWATSSVLVREYEHPVYYTSKALA---------LALITAARKLRPHPIVVMTDQSLRQTPDALVKWSV
ELSEF--------DLSYRPRGALADFMVDCVEQENPKEVWLAMVDGSH-------------------IKFELTNNQAEYEAFITGLGLAHEKVEIRADSQ
LVCNQLCDQFQ-----------------------------------------------
>tr|Q5JQ02|Q5JQ02_ORYSJ OSJNBa0009K15.22 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0009K15.22 PE=4 SV=2
-----------------------RRQAPERQAFIREEVARLLEAGFIREV-IHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKD---PYPLPRIDQIA
GCDLLCFLDAYSGYHQIRMAREDEEKTAFITP-------IGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR----NVEAYVDDLVVKTR-NQETLLSD
LAETFESLRTARIKLNPDKCVFVPAGKLIGFLVSARGIEANPEKLRMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLF--KLLKRSGPFIWTEEAER
ALTQLKAYLSSRPVLVAPEPDEPLLLYLAAT-PQVVSAALVVERRRPVYFVSEAML---------YAILMASKKLRHHRVTVVTSYPLGQIREGVVKWAI
ELSEF--------DLRFEPRHALADFVAEWTSQLPHTVYWVMQFDGSL-------------------VRLDATNNTAEYEGLLAGLRVAARRLLVLGDSQ
LVVNQVSKEYQ-----------------------------------------------
>tr|Q53Q00|Q53Q00_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g19640 PE=4 SV=1
-------EEVDIGPGVRPHQQPLRRCKADMLEPVKAEIERLYDAGFIRPCR-YAEWVSSIVPVIKKTGKVKVCIDFRDLNKTTPKD---EYPMPVADQLS
GNKILSFMDGN---NQIFMAEEDIHKTAFRCPG-----GIGLFEWVVMTFGLKSAGATYQRAINYIYHDLIGW----LVEVYIDDVVVKSK-EIEDHIAD
LKKVFERTRKYGLKIPTKCACGVSAGQFLGFLVHERGIEVTQRSVNIQPPENKTELQEMIGKINFVRMFISNLSLEPFTPLLRSK--ADQQFTWGAAQQK
ALDNIKEYLSSPPVLIPPQKGIRFRLYLSAGEKSIGSVLIQELDEKERVVFYLSRRLYLLSNECTVICKADVIKYMLSAPILKGR---------VGKWIF
SLTEF--------DLRYESPKAIADFIVEHR-DDSIMVPWTLFFDGSVCTHGCGIGLVIISPRGACYATNNQAEYEAVLKGLQLLKEVEADAIEIMGDSL
LVISQLAGEYEKNDTLMVYNQELMKEFQLVTLKHVS----REQNIKANDLAQGAS---
>tr|A0A087GRF9|A0A087GRF9_ARAAL Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G244800 PE=4 SV=1
-------VSICIDETFKPIKQKRRKLGSDRAKAVNDEVERLLRVGSIYEVK-YPDWLANPVVVKKKNGKWRVCVDFTDLNKACLKD---SFPLPHIDRLT
GNKLLTFMDAFSGYNQILMHPEDREKTAFITDR-------GIYCYKVMPFGLKNAGATYERLVNKMFRDQLGK----TMEVYIDDMLVKSL-KEEDHISH
LEACFEQLNLHKMKLPTKCRFAVTSGEFLGYLVTRRGIKANPKQIDMASPRNKREVQRLTRRLN---RFISRSTCLPFYDTLR----GNKQFEWSDKCED
AFRQLKEYLATPPILAKPVTGEPLFLYIDVSETAVSAVLVREERGEQKPIFYVSKTLPYFQSHTIVILSTFPLRTVLHSPSQSGR---------LAKWAI
ELSEY--------DIEYKGRTVLADFLIELP-EDHSPGIWELHVDGSSSKNGSGVGIRLASPTGEIRASNNEAEYEAIIAGMRLAQGLNIEHVHAFCDSQ
LVSNQFSGEVNVEMTEAEA------------------------NTEPAPLSTPAS---
>tr|B2BXM3|B2BXM3_ARALL GagPol3 OS=Arabidopsis lyrata subsp. lyrata GN=GagPol3 PE=4 SV=1
--------------SFKPVKQKRRKLGVERAKIVNDEVDKLLKIGSIREVQ-YPEWVANTVVVKKKNGKDRVCIDFTDLNKACPKD---SFPLPHIDRLA
GNELLTFMDAFSGSNQIMMNPEDQEKTSFITDR-------GIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGK----TMEVYIDDMLVKSL-KKEDHVKH
LEECFGILNKYQMKLPAKCTFGVPSGEFLGYIVTERGIEANSNQINMPSPRNFKEVQRLTGRLN---RFISRSTSLPFYQILK----GNKGFLWDEKCEE
AFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHAVSGVLVREDRGEQKPIYYVSKSMPYFQSHPVQVLTNQPLRTILHSPSQSGR---------LAKWAV
ELSEY--------DIEFKSRIVLADFLTELP-IPGTNQTWKLHVDGSSTKQGSVVGIKLESPTSEIDASNNEAEYEALIAGLRLAQGVGAKEILAYCDSQ
LVVNQFNGDYEKDSRMEAYLKDLSKNFSKFELIRIL----RGENTTADALAALAS---
>tr|Q2QTQ7|Q2QTQ7_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g18840 PE=4 SV=1
-------EEVDTGDGFRPYKQPPRRFNPLLYDRVKEEIDRLLKAGFIRPCR-YAEWLSSIVPVEKKSGKIRVCIDFRDLNKATPKD---EYPMPIADMMS
GHKVISFLDGNAGYNQIFMAEEDMYKTAFWCPG-----FVGLFEWVIMTFGLKNAGATYQRAMNLIFHDLLGI----ILEIYIDDIVVKSD-GMEGHIAD
LRLAFERMRRYGLKMPLKCAFGVSVGKFLGFMVHKRGVEIDPKKIEYKAPTCKKEVQKLLGK-NYLIRFISNLAINAFVPILRLK--KEADFTWGAKQQE
AFEKLKRYLSTPPVVRVPKAGKPFRLYIASEDKVIGAVLTQEEDGKEYI----------------ITYLSRRLLDVETRPILSGR---------IGKWAY
ALIEY--------DLPYEPLKIVCDFIVYHH-IDIAVIPWRIYFDGSSCKEGQGTGVVLFSPNGMCYCTNNEAEYNALLFGLQVMEMVGAKYVEAFGDSE
LVVQQVAGIYKLDESLNRYLLDIIANFDNFVIRHIA----RRDNSRANDLAQQAS---
>tr|A5AUA6|A5AUA6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037590 PE=4 SV=1
--------------TARPVRQKIRRFHSDRQKVIQNEIDKLPEAGFIREVA-YPDWLENVVVVPKKEGKWRVCVDYTNLNNACPKD---SFPLPRIDQIS
GQGMLSFLDAFSGYHQILMSPDDEEKTAFITPH-------GLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGH----TVEVYIDDIVVKSK-TREEHVLH
LQEVFHLLRKYGMKLPSKCAFGISAGKFLGFMVSQRGIEVSPDQVKTPPPRNKKEVQRLTSKLG---RFIARFTLRPFFFGNK-------KSL-------
--------IT--RMDGHLIPKEKLYMYLAVSKWAISAVLFRCPSSKEQKPIYYVSRAPYFQAXPVIVLTDQPLRNILHKPDLTGR---------MLQWAI
ELSEF--------GIEFQPRLVMADFVLEYS-RRPSQEWWTLRVDGASRSSGSGVGLLLQSPTGEHSASNNEAEYEAILSELDLALALSVSKLRIFSDSQ
LVVKHVQEEYEKDARMTRYLRNTLQQFTEWTIEKIK----RADNRRADALASIAA---
>tr|Q01MH0|Q01MH0_ORYSA OSIGBa0107A02.6 protein OS=Oryza sativa GN=OSIGBa0107A02.6 PE=4 SV=1
------EHSLHVKDDAKPIKQRLRRFAQDRKNVIKEELTKLLAAGFIKEV-LYPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKD---PFVLPRIDQTA
GCELLSFLDCYSGYHQIRLKESDCSKTSFITP-------FGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYVDDVVVKTK-QKDDLIAD
LEETFASIRAFRMKLNPERCIFVPSGKLLGFLVSHRGIQANPEKINMKPPSSQKDVQKLTGCMVALSRFVSRLGEMPIFKLLKKT----DNFQWGPEAQK
AFEDFKKLLTTPPVLASPHPQEPLLLYMSATS-QVVSTVLVVERQRPIYFVSEVLADSKTRYPQVQKKL--SHYFQGHSVTVVTSFPLGDINGRIAKWAL
ELMSL--------DISFKPRTALADFWTECQEDMPEENHWTMHFDGSKRLSGTGVGVVISPTGESYVLWIHASHNVAEYEALLHGLRIAIRRLIVRGDSQ
LVVNQVMKEWSCLDDNMIAYQEKLEKFDGLELTHVLRH----NNEAANRLANFGSKWE
>tr|Q7XRZ3|Q7XRZ3_ORYSJ OSJNBb0015C06.3 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0015C06.3 PE=4 SV=2
------SLRGDAKTKKNPLDPSYPTKTADRKDAIKEELTKLLAAGFTKEV-LHPDWLANPVLVRKKTAQWRMCVDYTDLNKSCPKD---PFGLPRIDQ--
----------------------------------------------------------------------IGR----NVEAYVDDVVVKTK-QKNNLIAD
LKETFASIRAFRMKLNPEKCIFVSSGKLLGFMVSHRGIQANPEKINMKPPSSQKDIQKLTGCMVALSRFISRLGEMRFFKLLKKT----DNFQWGPEAQK
AFEDFKKLLTTPPVLASPHLQEPLLLYVSATF-QVVSTVMVVER---VYFVSEVLTNSKTRYHQVQKKL--SHYFQGHSVTVVTSFPLGDINGRIAKWAL
ELMSL--------DLSFKPRTALADFWTECQEDMPLEKYWTMHFDGSKRLSGTGAGVVISPTGENYVLWIHASHNMAEYEALLHGLRIAIRHLIVRGDSQ
LVVNQVMKEWSCLDDNMAAYLEKLEKFDGLELTHVLRH----NNEAADRLANFGSKRE
>tr|H3H9K9|H3H9K9_PHYRM Uncharacterized protein OS=Phytophthora ramorum GN=fgenesh1_pg.C_scaffold_2146000001 PE=4 SV=1
------VCDIDVG-GATPVAQRVRRVAPQFREKLSDLIKSLLSAEMIVPS--TSPWASPIVIIIKKNGDIRLCIDYRLVNGLTRLM---VYPMPMINDLD
KVLWYCSLDMASGFWVVSMTERARKISAFVTP-------FGLFEWTRMPFGLKNAPQIYQRLIDNALYGHLRIRKPIGRWSYIDDILVTAT-TRDTLCEK
VERLLDACERWNLSISVVKSFWQRKVGYLGHQVSADGLEAHPKDFELPFPLTLRSMQAFLGSLNYYSRFIEDFVAAGLYELREADFHEPDADRWT-RAKI
AFTMLKAKIVSTPILKHFDPDRTPVIVVYAS-QWAISAALVQEHDGVYWPL---------NYGIVDKEVLALLRMLDVNYTLTTRSILVLSRHSLGNWAA
LLSEWTLEASITPRAEVDEALAIAKQPRQTI-LMPPENLLVASFDGSARVKGAYSAIIWLPEWTIASEYMPLTVNEAEYRGLLLCYTLDRGRIVICGDSN
LVIRQMRGEIACKAPGLLLLHQRLRSWPKHEFLHMK----RDWNQSADKLASAAL---
>tr|W2Y9V7|W2Y9V7_PHYPR Uncharacterized protein OS=Phytophthora parasitica P10297 GN=F442_19730 PE=4 SV=1
------VCDIDTG-DAKPVAQRVRRVAPQFRGKLSDLIKGSLSAKITRVS--SSPWASPIVVIIKKNGDIRLCIDYRVVNSLTRLM---VYPMPLVNDLD
KALSYCSLDMASGFWVVEMTERARMVSAFVTP-------FGLR--------HANAPQIYQRLLDNALYGYLRIPGTVGRRSYIDDILVTAE-PWGDSLRQ
SRSTLE-CVR---------PMEVDHRSEELMGVPQDGLEAHPKNLELPFPRTLRAMQSFLGSINYYSRFIEDLAASILYELREVDFHEDEKDKWD-RAQT
AFEMLKNKIATAPVLRHFDPDRVPVVVVYAS-DWAISAALMQEHGGTYMPVTFTSRPNELNYDMVEKEILALLRILDVCYFTVTRPIKVLTRHSLGNWAA
LLSPWTLEASITPRESINSMLSIAKQPRQLT-PAVIEELLVVSFDGSARVKGARSAIVWLPEWIVESKYLPLTVNEADYQGVLLGFSLDRGRLIICGDSN
LVIRQMRGEIECKAPGLTPLRRQLRTWPAHEFLHVK----LDWNQSADRLANTAL---
>tr|H3H3W0|H3H3W0_PHYRM Uncharacterized protein OS=Phytophthora ramorum PE=4 SV=1
------VCDLDVG-DAKPVAQRPRSIAPHLMLKVYELLEKLLETGLIEHS--ESQWASPIVIVLKKNGDIRMCIDYRVVNEFIKLL---HYPLPLIDDLE
SAMWFMSLDMASGFWAVRMTERAKLISAFVCP-------FGHFQWIRMPFGLKNAPLIYQAVINNCLWGFVRLDDKMGRSSYIDDIAHGAP-TWDHL---
----------------LPKSEFKLSIPYLSHEISAEGIRAKPKIAKLPFPKTLKGVQSFMGSLNYYNKFIEDLPAAVLYELTDEQIRA-----LS-RAKE
AFEILKRKIVSTPLLRHPDRTRPFVIIPHAN-QWAASAVLGQEYDGVNHPVRFTGRDAELRYQLAEKE--------------------------NVKWGV
ILSHWNLEAGITPREHLDEVANLIKGRV----APIIFEGHILIFDGAAKTSGSCGCILWLPGWKVQGFVLEVTVNDAEYSGLLKGLERDVQEIVVVGDSR
IIIQQAQGLINCHQPNLQRKLALRPRFKSVRLVHVK----REFNQAADYLTSKTL---
>tr|A0A081B340|A0A081B340_PHYPR Uncharacterized protein OS=Phytophthora parasitica P1976 GN=F444_00788 PE=4 SV=1
------ICDLDVG-GARPVAQRPRSIAPHLAVKVYQLLKKLLETGLIEHS--ESPWASPIVIVLNKNG--------------------------------
-ALWFMSLDMASGFWAIRMTERAKLISAFVCP-------FGHFQWVRMPFGLKNAPLVYQHVINNCLWGFVRLPDQMGRSSYIDDIAHGAP-TWDQLCND
LDALLYRLRYWNISVSLPKSEFKRTIPYLSHEIGAEGIRAVPKIVKLPFPKTLKGIQSFLGSLNYYHKFIEDYPAAVLYELTDEQIRA-----LT-QAKE
AIEILKRRSSQPRCFG-----------------------IRTARSRVIQPVRFTGRDAELKYHIAEKEVLAVIRVI------------------AVPWGV
ALSQYDLDAGITPREHLDEIASLIKGRI----KAPPYQGVVLSFDGAAKTSGTCGCILWLPAWKVRGYILDVTVNDSEYYGLLHGLEHDIQDLVVVGDSR
IVIQQVQGLINCNQRNLQRRLA------------------------------------
>tr|H3GTQ4|H3GTQ4_PHYRM Uncharacterized protein OS=Phytophthora ramorum PE=4 SV=1
------VCDIDVQ-GHPPIKQRARRTPLRHLRKLYELLKGLLKARLVAFS--DSPWASPIVIVLKKNGDIRLCIDYKLVNAVTAIM---EYAMPLVDDLE
AYLWFCSLDAASGFWAIMMTMRARKVSAFVCA-------LGHFEWLRMPFGLKNAPMIYQRMIDNALWGFVQPKPVADRRSFVDDICFGSE-TFDACLET
LDRLLQRFTECRISVSFTKSIFQPKVDFLSHEVSAEGIRADTKKMKLPFPASKKGMQSFLGALNYYSRFIQDFAGAALYQLKDEDFTP-----LS-AAKR
SFAALQQKVAEAPILRHFDRDKEVHVTLFAN-EWTLSSTLMQYHDDKLHLVRFCGRDAEMNYHPAKKEVLALLLVLKVCYSQVGRTIRVYTRFSATHFAV
MLSPWHLVAGLTSFVELEDSLPVTTKGSPTA-RMDPYTGFVMSFDGSAKTEGSCSWILWLPEWTVASAYLETTVNLAEYAGMNNGVEHGAEDLVIVGDSR
LAIQQSLGVMACRKESLMVQLNLTTKLRSVKYLHVV----REFNAAADSLASEAL---
>tr|A5BQR1|A5BQR1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029322 PE=4 SV=1
---TIVQHHLPILPHARPVKQKLRRLHPRWSLQVKEEIQKQLSVGFLSVVE-YPEWLANVVPVPKKDGKVRVCVDFRDLNKASPKD---DFPLPHIDMLA
GHPMLSFMDGFSGYNQILMAPEDMVKTSFITE-------WGTYCYRVMPFGLKNAGATYQRAATTLFHDMMHR----DVEVYVDDMIVKSR-DRADHLAA
LQR-----------------------KLLGHIVSERGIEVDPEKIRMPTPRTEKEIRGFLGRLQYISRFIARLTCEPIFRLLRKN----QPTVWNDDCQR
AFERIKECLLSPPVLVPPTPGRPLLLYLSVS-DMALGCMLAQLDDRAIYYLSKRMLEYECKYIMIERLCLAVVWATRYSVLLVSLDPLRYLPVLLMRWLV
LLTEF--------DIHYVTQKHLADFPDEQISMTSIT-GWRLYFDGAANQSGFGIGILLSPQGDHRSVRLALTNNIVEYEACITGLETGIRQLEIHGDSN
LVIKQTQGIXRKLKPYHA-YLDLLDRFDVLRYIHLP----RVENQFADALATLAS---
>tr|Q6L420|Q6L420_SOLDE Polyprotein, putative OS=Solanum demissum GN=SDM1_29t00004 PE=4 SV=2
-----VVHKLPIDPKFPPVKKKLRKLKTDMSVIIKEEITKQLEAKVIRVA-QYPSWLANIVPVPKKDGKVRMCVDCRDLNKASPKD---DFPLPNSHNCA
EHEIASFVDCYAGYHQIIMDDEDAEKMSFITP-------WGTYCYRVMPFGLKNAGATYMRAMTTMFHDMMHK----EIEVYVDDVIIKSK-KQSNHVQD
LRRFFERLRRYNLKLNPAKCVFVLSGELLGFIGSRRGIELDPLKIKLPPPKNKTEVMSFLGRLNYISRFIAQLTTEPIFKLLKKN----ATVEWTEECRE
AFERIKNYLLNPPVLVPPEPGRPLILYMSVL-DNSFGCVLGQHDGHAIYYLSKKFTVYESKYTLLERTCCALQKLKHYTTYLIRMDPLKYIPTGLAKWQI
LLTEF--------DIIYVTRTAMKAALADHLAENPIDDLKTYFPDEEVS----CIDEVIKDQGWKFDAQLRCTNNMSEYEACILGLRLAADKLLVLGDSD
LLVHQIQGEWETDPKLIQHCLQDLQQFVSIKFRHIPR----VHNEIVDALATL-----
>tr|L0P1I7|L0P1I7_9POAL PH01B001G05.2 protein OS=Phyllostachys edulis GN=PH01B001G05.2 PE=4 SV=1
----------------------PKPSDQTKEEAIQSEIDKLLKAGFIREVD-HPQWLANPVMVRKNNGKWRMCIDFTDLNKACPKD---DFPLPRIDQLS
GCELLSFLDAYSGYHQISMCKEDEEKTSFITP-------YGTYCYIKMPFGLKNAGATFQRLMQKTFSPQIGR----NLEAYVDDLVVKNT-NAGDHIPD
LQETFNNLRRHNLKLNPEKCVFVSAGKLLGFLVSARGIEANPAKIAMRPPTTKKEVQKLTGCMAALSRFIARLGELPFFKLLRKHG----SFEWTKEAND
AFEELKKYLTSTPVLVSPRPGETLLIYVAAT-LQTVSGVLVVERDRPVYYVSEVLHGPKERYPHVQKLLYGLRKLRHHKVVVPTGYPLGVLSGRIAKWAV
ELGAF--------DLHFISRTAIAEFIAEWTNPEPTQGEWTLYFDGSLMLQGSGAGVLISPTGEHYAIQLNATNNVAEYEGLLAGLRVARSRLLVKGDSQ
LVANQVGKEYQCSSTKMSSYLAEVRKLFGFQIQHIPR----KENFLVDQLARMAST--
>tr|Q53MV2|Q53MV2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g24150 PE=4 SV=1
---EVTEHKLMVRPDAKPVKQKLRRFAPDRKQAIREELDKLLKAGFIREVL-HPEWLANPVMVRKANGKWRMCVDFTDLNKASPKDH---FPLPRIDHLA
GCELLSFLDAYSGYHQISMAKEDEEKTSFITP-------FGVFCYVKMPFGLITTGNTFQRTVQGALNDQLGN----NVEAYVDDIVVKTK-TSDSLIDD
LWETFDNLRRYRLMLNPEKCIGVPSGKLLGLLVSGRGIEANPEKIKMKSPTRLKEVQKLTGCMAALNRFIARMGGQPFFALLKKQ----HKFVWTQEAEE
AFIALKRYLSNPPVLVAPQPNEELFLYIAAT-PYSVITVIVVERERLVYYVSEALHDAKTRYPLIRKLLYAVIKLRHYSYFLLGEVVNKDIVGRIAKWVV
ELSQF--------DVHFVPRTVLADFVAENRSDNQTDETWTMVFDGALNSQGAG-AGFISPSRDKHAFHLNATNNTAEYEGLLAGIRVGVKRLIVKGDSE
LVANQVHKDYKCSSPELSKYLAEVRKLDGIEVRHVYRKDNIEPNDLARQAE-------
>tr|Q2QU68|Q2QU68_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g17290 PE=4 SV=1
----VIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEV-LHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKD---PFGLPRID---
---------------QIRLKESDCLKTSFITP-------FGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYVDDVVVKTK-QKDDLISD
LEETFASIRAFRMKLNPEKCTFVPSGKLLGFMVSHRGIQANPEKVTMKPPRTQKDVQKLTGCMAALSRFVSRLGEMPFFKLLKKT----DDFQWGPEAQK
AFEDFKKLLTEPPVLASPHPQEPLLLYVSATS-QVVSTVLVVERQRPIYFVSEVLADTKTRYPQVQKLLYGIITTRKLSHYFQGHPVTFDILHRIAKWAL
ELMSL--DISFKPRISIKSQ-ALADFWTECQEDTPAEKHWTMHFDGSKRLSGTGAGVLISPTGERYVLWIHASHNVAEYEALLHGLRIAIKRLIVRGDSQ
LVVNQVMKEWSCLDDNMMTYRQELEKFDGLELSHVLRH----NNEAADRLANFGSKRE
>tr|H3H5B4|H3H5B4_PHYRM Uncharacterized protein OS=Phytophthora ramorum PE=4 SV=1
------VCDIDVG-GATPVAQRVRRVAPQFREKLSELIKSLLSAKMIEPS--TSPWASPIVIIIKKNGDIRLCIDYRLVNSLTRLM---VYPMPLVNDLD
KALWYCSLDMASGFWVVSMTERARKISAFVTP-------FGLFEWTRMPFGLKNAPQIYQRLIDNALYGHFRISPSVGRRSYIDDILISAG-SWDDVCEK
VEKLLDACDRWNLSISVVKSFWYRKVDYLGHRVSAEGLEAKPKDLELPFPKTLRSMQSFLGSLNYYSRFIEDFAAAVLYELREVDFTGKANDRWVR-AKT
AFNLLKSKLVTTPILRHFDSDRQPVIVVYAN-KWAISAALVQEHEWPVIFTSRTLKSNELNYGMVDKEVLALLRILDVCYTTLNRSIKVWLQGRLGRWAA
LLSEWTMIASITPRSKVDD--ALIAIPVKQTIAKLPPTLLVVSFDGSARVSGAYSAIVWQPEWSIVAAASELTVNEAEYRGLLLGFKLLSGRVIICGDSN
LIIRQMRGEIDCKAPGLQVLREK----AMGQLKAWPTHVKRDWNQSADRLASTA----
>tr|H3GHJ9|H3GHJ9_PHYRM Uncharacterized protein OS=Phytophthora ramorum PE=4 SV=1
------VCDIDVG-GAAPVAQRVRKVAPQFREKLSDLIKSLLSAKMITPS--TSPWASPIVIIIKKNGDIRLCIYYRLNAH-------------------
-----------------------GRSLAFITP-------FGLFEWTRMPFGLKNAPQIYQRLIDNALYGHLRICPSVGRRSYIDDILVTAI-TWDMLCEK
VEALLDACERWNLSISVVKSFWRRKVDYVGHRVSVDGLEAHPKDLELPFPQTLRSMQSFLGSLNYYSRFIEDFAAAVLYELREADFQVEDADRWAR-AKI
AFTMLKAKIVSTPVLKHFDPDRTPVIVVYAS-QWAISAALVQGHDWPVNFTSRTLKHNEINYGIVDKEVLALLRMLDVNYTLLTRSILVWLQGRLGNWAA
LLSEWTLIASITPRAEVDE--ALIAIPVRLIITMPPPTLLVASFDGSARVSGAYSAIVWKPEWTIVTATSELTVNEAEYRGLLLCFDLLSGRVVICGDSN
LVIRQMRGEIACKAPGLLLLREK----AMDRLRSWPRHMKRDWNQSADKLASEA----
>tr|H3H639|H3H639_PHYRM Uncharacterized protein OS=Phytophthora ramorum PE=4 SV=1
------VCDIDVG-DAKPIAQRVRKIPPQFREKVSDLLKGLLSAKMIQIS--KSSWASPIVVIVKKNGDIRLCIDYRLVNELTQLL---VYPMPLVNDLD
GYLWYCSLDMASGFWVVPMTDRARLVSAFITP-------FGLFEWLRMPFGLCNAPQIYQRLIDNALYGFWSLSPSVSRRSYIDDILIGGT-TWDDLCTK
VERLLDVCEQWHLSISVEKSEWMTQVGYLGHKVSGHGLEAKPKNLELAFPHTLKGLQSFLGSLNYYHRFIADFAATTLYALTEADFGVHSQPKWTH-ALN
AFESLKMKLAHTPMLKHFDATREPVVIVYAS-DWAISAVLTQSHDMPVKFTSRTLKPNELNYSIVEKEILALLRVLNDCFAMLGKTIRVWLQGRLSQWAA
ILSPWKLIASITPRAYVDS--ALEEIPRSKITDIPIPILYVMSFDGSAKAEGAFSAVVWKPGWEIVRAASSLTVNEAEYRGMLLGCSLLDSRLIVCGDSN
LVIRQMREEMDCKSPGLKLLKQR----ASCALQKWPRHDTPDPHRLEENRA-------
>tr|Q2QSS4|Q2QSS4_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g23110 PE=4 SV=1
-----IMHQLAIKPDAKPRKQKLCKMSADRQEAAKAEVQKLLRAGVIQEID-HPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKD---DFPLPRIDQLA
GYELMSFLDAYSSYHQIHMNPPDIPKTAFITL-------LGIFCHLRMPFGLRNAGATFARLVYK-----------------------------------
--ETFDNLRAAGIKLNPEKCVFGRAGKLLGFLVSERGIEANPEKIDMKPPSSVHEVQKLAGRITALSRFLPKVAELPFFKTLRGMG----KFSWTPECQA
AFDELKQYLQSPPALISPTLGSELLLYLAAS-PVAVSAALVQETEKPVYFVSEALQGAKARYIEMEKLAYALVMAKHHKVIVPSQYPLKEISGRLSKWAA
ELSPF--------DLHFVARTVLTDFVAEASEPEPVEQPWVMCSDGSWSHKGAGIAAILSPNRIWYAARLQTTNNAAEYEAILLGLRKAKQRLLIRTDSK
LVAGHVDRSFE-----------------------------------------------
>tr|Q6UUK4|Q6UUK4_ORYSJ Putative reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0017M13.18 PE=4 SV=1
-SRSIVEHRLPIKPGVRPHQQPPRRCKANMLEPVKAEIKRLYYACFIRPYR-YAEWVSSIVPVIKKNGKVRVCIGFRDLNKATQKD---EYPMPVADQLS
GHKILSFMDGNAGYNQIFMAEEDIHKTAFRCPG-----AIVLFEWVVMTFGLKSAGATYQRAMNYIYHDLISW----LVEVYIDDVVVKSK-EIEDHIAD
LKKVFERTRKYGLKMNPTKCAFVSAGQFLGFLVHERGIEITQR------------SVNAIKKIQPLENKTE-------------------LLILLEEHQK
ALDSIKEYLSSPPVLIPPQKGIPFRLYLS--------------------------------------------AGR------------------VGKWIF
SLTEF--------DLRYESPKAIADFIVDDDSIGLVEVPWTLFFDGSVCTHGCGIGLVISPRGASFAYTIKATNNQAEYEAVLKGLQLLKDAVEIMGDSL
LVVSQLVGEYEKNDTLMVYNQELMKEFRLVTLKHVSREQNVEANDLA-----------
>tr|Q8W0Y2|Q8W0Y2_MAIZE Putative gag-pol OS=Zea mays GN=Z178A11.4 PE=4 SV=1
------EHSPDIRAGARPVKQPLRRFDEEKRRAIGEEIHKLMAAGFIKEVF-HPEWLANPVLVRKKGGKWRMCVDYTGLNKACPKV---PYPLPRIDQIA
GCETLSFLDAYSGYHQIRMKESDQLVTSFITP-------FGMYCYVTMPFGLRNAGAMYQRCMNHVFGEHIGR----MVEAYVDDIVVKTR-KASDLLSD
LEATFRCLKAKGVKLNPEKCVFVPRGMLLGFIVSKRGIEANPEKIAMGLIKDLKGVQRVMGCLAALSRFISRLGELPLYRLLRKA----ECFTWTPEAEE
ALGNLKALLTNAPILVPHAAGEALLIYVAATTQVVSAAIVVREEGRPVYFISEVLSETKIRYPQIQKLLYAVILTRRKLRHYFESHPAFEISGRIAKWAV
EIMSE--------AISFVPRKVLADFVVEWLPTVPIQPLWTMFFDGSLMKTGADAGLFISPLGKHYVLRLHASNNVAEYEALVNGLRIA-----------
----------------------------------------------------------
>tr|Q84T33|Q84T33_ORYSJ Putative GAG-POL OS=Oryza sativa subsp. japonica GN=OSJNBa0031I04.34 PE=4 SV=1
-------------------------------------------------------------PVIEKNDKVRVCIDFRNLNKATPKD---EYPMPVADQLS
GHKILSFMDGNAGYNQIFMAEEDINKTAFRCPG-----AIGLIEWVVMTFGLKSAGATYQRAMNYIYHDLIG----WLVEVYIDDVVVKSK-EIEDHIAD
LRKVFERTRKYGLNMNPTKCAFGSVCQFLGFLVHERGIEVTQRSVKIQPPKNKTELQEMIGKINFDRRFISNLSLEPFTPLLRLK--ADQQFTWGAEQHK
ALDSIKEYLSSPPVLIPPQKGIPFILYLSAS-EKSIGSVLIQELERVVFYLSRRLLDAETRYSPVEKLCLCLYFSYTRRHYLLSNEYTYMLPILVGKWIF
SLTEF--------DLRYESPKAIADFIIEHR-DDSIGSPWTLFFDGSVCTNGCGIGLVISPRGAQFAYTIKPTNNQAEYEAVLKGLQLLKDAIEIMEDSL
LVTSQLVGEYEKNDTLMNEKCQELMKFRLVTLKHLSREQNIEANDLAQ----------
>tr|A0A061E766|A0A061E766_THECC Uncharacterized protein OS=Theobroma cacao GN=TCM_009817 PE=4 SV=1
---DIVAHKLPLKPECKPIKQKLRRMKPEMLLKIKEKVKKQFDAGFLEVA-KYPEWVANIVPVPKKDGKVRMCVDYRDLNRDSPKD---NFPLPHINTLA
RHSMFSFMDGFSGYNQIKMALEDREKTTFITM-------WGTFCYKVMPFGLKNAGVTYQRAMVTLFHDMMHR----EVEVYVDDMIVKAH-KTEDHATN
LERLFKRLRKFQLRLNPTKCTFVTSGKLLGFLVSERGIEVDPDKVQLPPPKT-----SF----------V------------N-----TNPGAWNEECQV
AFDKVKEYLLSPPVLVPPVAVRPLFLYLTVN-EGSMGYVLGQHDEGRVVRWQVLL-------SEYDIVY-VSQKAIKGSAIL--------------DFLA
EREEDYE----PMEFEFPDEDLMSICQ-T-NEEESEKENWKMFFNGASNALGHGIGVVLSLEGDQVIAKLNCTNNVAEYEACAMGLQAVIEILEVYGDYA
LVIYQLRGEWECDSKLVRKLIKN---FNKIRFTHLP----REDNQMADALTTLA----
>tr|Q7FAE8|Q7FAE8_ORYSJ OSJNBa0052P16.1 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0052P16.1 PE=4 SV=1
----VIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKD---PYPLPRIDQIA
GCDLLCFLDAYSGYHQIRMAREDEEKTAFITP-------VGTYCYTSMPFGLKNAGPTFQRTTRISLGSQIGR----NVEAYVDDLVVKTR-NQETLLLD
LAETFENLRSARIKLNPDKCVFVPAGKLLGFLVSARGIEANPEKIQMRPPSKLRDVQCVTGCIAALSRFISRLGALPLFKLLKRS----GPFTWTEEAER
ALTQLKTYLSSPPVLVAPGPNEPLLLYLAATPQGGVGALLSSSDDRLVYFVSEALRDAKTRYPQAQKMLYAILKLRHHRVTVVTSYPLGQILHNVVKWAI
ELSEF--------DLHFEPRHALADFVAEWTSTDPHTAHWVMQFDGSLSLQGAGAGVMLSPNGDRYLVRLDATNNIAEYEGLLAGLRVAARRLLVLGDSQ
LVVNQVCKEYRCSDPQMDAYVRRMERHDGIELRHIPR----RDNMVADELSRLA----
>tr|Q6AUT8|Q6AUT8_ORYSJ Putative gag-pol OS=Oryza sativa subsp. japonica GN=OJ1324_A07.9 PE=4 SV=1
-------------PDIKPRKHKLCKMSADRQEAAKAEVQKLLRAGVIQEID-HPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKD---DFPLPRIDQLA
GCELMSFLDAYSGYHQIHMNPLDIPKTSFITP-------FGTFCHLKMPFGLRNAGTTFARLVYKVLGKQLGR----NVEAYVDDIVVKSR-KAFDHAID
LQETFDSLRAAGIKLNPEKCVFVRAGKLLGFLVSERGIEANLEKIDMKPPLSVHEVQKLVGRIAALSRFLSKAAE------------------------R
ALQGAKTRYIEMEKLAYA-------------------LV----------MASRNLK----HYFQANKIVPSQYPLG---EILRGRE----VTGRLSKWAA
ELSPF--------DLHFVARSVLADFVAEWTDPEPAEQFWVMCSDGSWSHSGAGIAAVFSPNGVRYAARLQTTNNAAEYEAVLLGLRKAKRRLLIRTDSK
LVAGHVDNSFEAKEEGMKKYLEAVRSMEKYFTGITVEHLPRGQNEEADALAKSAA---
>tr|Q94HQ3|Q94HQ3_ORYSJ Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNBa0065C16.18 PE=4 SV=1
-------------PDAKPRKQKLRKMFADRQEAAKAEIQKLLKAGVIQEIG-HPEWLANPVLVRKSNGKWRIL------KQSMSEG---RFPLPRIDQLA
GCELMSFLDAYSGYHQIHMNSADIPKTTFITP-------FVTFFHLRMPFGLRNAGATFARLVYKVLYKQLGR----NVEAYVDNIVVKSR-KAFDPASD
LQETFDKLRAAGMKLNPE-----------------KGIEANPEKIDMKPPSSVREVQKLAGRIAALSRFFSKAAE------------------------R
ALQGAKTRYIEMEKLAYA-------------------LV----------MASRKLK----YYFQAHKIVPSQYPLG---EILWGKE----VTSRLSKWGA
ELSPF--------DLHFVARTVLADFV----EPEPVEQLWVMYSDGSWSHKGAGIAAVNSPNGVRYAARLQTTNNAAEYEAILLGLRKAKRRLLIRTDSK
LVAGHIDNPFEAK-EGMKRYLEAVRSMEKCFIGIMVEHLPRGQNEEADALAKSAA---
>tr|Q2QWA8|Q2QWA8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g09990 PE=4 SV=1
-------------PDAKPRKQKLRKMSADRQAVAKAEVQKLLKAG------------------------------------ACSKD---DFPLPRIDQLA
GCELMSFLDAYSGYHQIHMNPADIPKTAFIIP-------FGTFCHLRMPFGLRNAGATFARLVYKVLYKHLGR----NVEAYVDDIVVKSH-KAFDHASD
LQVTFDNLRAAGMKLNPEKCVFVRAGKLLGFLVSKRGIEANPEKIDMKPPSSVREVQKLTDRIAALSRFLSKAAE------------------------R
ALQGAKTRYIKMEKLAYA-------------------LV----------MASRKLK----HYFQAQKTVPSQYPLG---EILRGKE----VTGRLSKWAA
ELSPF--------DLHFVARTVLADFVAEWTEPEPVEQPWMMYFDGSWSHKGAGIAAITSPGGVQYAARLQTTNNAAEYEAILVGLKKAKRRLLIRTDSK
LVAGHVDKSFEAKEEGMKRYLEAVRSMEKCFADITVEHLPRGQNEEADALAKSAS---
>tr|Q9SKE7|Q9SKE7_ARATH Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g13330 PE=4 SV=1
------------------------------------------------------AWSSANLISLEKNGKWRVCIDFRDLNKACPKD---SFPLPHIDRLV
EHEKLSFMDAFYGYNQILMRRDGQEKTAFITD-------RGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGK----TIEVYIDDMLVKSA-HEKDHVPQ
LRECFKILIKFEMKLNPEKCSFVQSREFLEYLVTERGIEANPKQIEMPSPKMAREVQRLTGRIPALNGFISRSANVPFYQPLRKGK----EFDWNKDCEQ
AFKQLKAYLTEPPILAKPEKGEPLYLYTNRDK----------------------------RCPAMEKLALSVRKLRSHPIVVMTSQPIRTILHRLAKWAI
ELREY--------DIEYRTRTVLADFVIKLPLDTNSNKKWLLHVDGSSNRQGSGVGIQLSPTGEVQSLQLGASNNESEYEALIAGIKLAQREIHAYSDSQ
LVTSQFHGEYEAKDERMEAYLELLQQFESFKLTRIPR----GENTSADTLAALAS---
>tr|Q53RL5|Q53RL5_ORYSJ RNase H, putative OS=Oryza sativa subsp. japonica GN=LOC_Os03g36570 PE=4 SV=1
-SRSIVEHRLPIKPGVRPHQQPLRRCKADMLEPVKVEIKRLYDACFIRPCR-YAEWVSSIVPVIKKN----------DLNKATPKD---EYPMPVADQLS
GNKILSYMDGNVGYNQIFMAEEDIHKTAFRCPG-----AIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLIG----WLVEVYIDDVVVKSK-EIEDHIAD
LRKVFERTRKYGLKMNPTKCAFGSVGQFLGFLVHERGIEVTQRSVKIQPPENKTELQEMNGKINFVRRFISYLSLEPFTPLLRLK--ADQQFTWGAEQQK
ALDDIKEYLSSPPVLIPPQKGISFRLYLSA-GEKSIGSVLIQELDRVVFYLSRRLLDVETRYSPMEKLCLCLYFSCTRSHYLLSNECTKYMPILVGKWIF
SLTEF--------DLRYESPKAIADFIVEHC-DDSIGSPWTSFFDGSVCTHDCGIGLVISPRGACFAYTIKATNNQAEYEAVLKGLQLLKDAIEIMGDSL
LVISQLAGEYECKSDTLNEKCQLMQEFRLVTLKHVSREQNIEANDLAQ----------
>tr|Q5WMQ5|Q5WMQ5_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OJ1123_C08.15 PE=4 SV=1
----VIEHKLMVRPDAKPVKQKLWRFAPDRKQAIREELDKLLKAGFIREVL-HPEWLANPVMVRKANGRWRMCL-----NKACPKDH---FPLPRIDQLA
GCELLNFLDAYSGYHQISMAKEDEEKTAFITP-------FSVFCYVKMPFGLITARNTFQRMVQGALNDQLGN----NVEAYVDDIVVKTK-TGNSLIDD
LWETFDNLRRYRLMLNPEKCTFVPSGKLLGFLVSGRGIEANPEKIKA----------------------IENMK---------------SPTRLKEEAEE
AFIALKRNLSNPPVLVSPQPNEELFLYIAAT-PYSVSTVIVVERERPVYYVSEALHDAKTRYLQIQKLLYAVIKLRHHRVTVVSSFPLGDIVGRIAKWVV
ELSQF--------DVHFLPRTVLADFVANRLDSQTDNKTWTMAFDGVLNSQGAGAGFILSPSGDKHAIHLNATNNTAEYEGLLAGIRAAAKRLIVKGDSE
LVANQVHKDYKCSCPELSKYLAELKRFDGIEVRHVYHK----DNIKPDDLP-------
>tr|Q7XXC3|Q7XXC3_ORYSJ OSJNBa0027O01.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0027O01.10 PE=4 SV=2
----VIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDP---YPLPRIDQIA
GCDLLCFLDAYSGYHQIRMAREDEEKTAFITP-------IGTYCYTTMPFGLKNAGPTFQRTTRISLGNQLGR----NVEAYVDDLVVKTR-NQEMLLSD
LAETFESLRSARIKLNPDKCVFVPAGKLLGFLVSARGIEANPEKIRA----------------------IERMR---------------PPSKLRDVQEN
ALTQLKAYLSSPP-------VQPLLLYLAAT-PQVVSVALDRPHRRPVYFVSEALRDAKTRYPQAQKMLYAILKLRHHRVTVVTSYPLGEGTGRVVKWAI
ELSEF--------DLHFEPRHALADFVAEPVSQLPHTAHWVMQFDGSLSLQGAGAGVTLSPSGDRYLVRLDATNNMAVYEGLLAGLRVAARRLLVLGDSQ
LVINQVCKEYRCSDPQMDAYVRQMCHFDGIELRHVPRR----DNMIADELS-------
>tr|Q25AJ7|Q25AJ7_ORYSA H0510A06.8 protein OS=Oryza sativa GN=H0510A06.8 PE=4 SV=1
---EVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKD---PYPLPRIDQIV
DSTA----------------------------------------------------------------GQIGR----NVEAYVDDLVVKMR-TQETLLSD
LAETFESLRSARIKLNPDKCVFVPAGKLLGFLVVGTEAECAPRGLSEEHPVSTRPGKEQPEPNGGLRPPT--AGA-------------------------
-----GPPPACPTVSGAPDPQDGHGATVGRSDPEVVGTE-AECDQRPVYFVSEALRDAKTRYPQAQKMLYAIRKLRHHRVTVVTSYPLGQILHRVVKWAI
ELSEF--------DLHFEPRHALADFVAEWTEPLPHTAFWVMQFDGSLSLQGAGAGVTLSPSGDRYLVRLDATNNMAEYEGLLAGLRVAAGRLLVLGDSQ
LVVNQVSKEYQCSDPQMDAYVRRMERHDGIELRHVPRR----DNAVADELSRLASS--
>tr|Q8GTL8|Q8GTL8_MAIZE Putative gag-pol OS=Zea mays GN=ZMRS072.13 PE=4 SV=1
---DVAEHSLDIRTGSRPVKQPLRRFDKEKCRAIGEEIHKLMVAGFIKEVF-HPEWLANPVLV--------------------------PYPLPRIDQIV
DSTAGCETLSFLDAYSGYHQIKMKESDQLATSFII---PFGMYCYVTMPFGLRNAGATYQRCMNHVFGEHIGR----TIEAYVDDIIVKTR-KASDHLSD
LETTFRCLKAKGVKLNPEKCVFVPRGMLLGFIVSERGIEANPEKIAITNMGPLKGVQRVMGCLAALSRFISRLGERGLPLY------------------R
LLRKTECLLTNAPILVPPAAGEALLIYVAA-TTQVVSAAIERREQRPVYFISEVLSETKIRYPQIQKLLYA------HSVTVVSSFPLGEIIQRIAKWAV
EIMGE--------TISFAPRKVLAGFVAEWVLP--QPELWTMFFDGSLMKTGVGAGLLFSPLGKRCVLRLHASNNMAEYEALVNGLRIAIERLDARGDSQ
LVIDQVIKNSHCRDPKMEAYCDRLEDKYGLEVNHIAWR----YNETADELAKIASA--
>tr|Q75G47|Q75G47_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=B1003C08.10 PE=4 SV=1
---SLIEHNLAIKPEHKPKKQKLRRMSIDRQQAAKAELEKLLKAKVIREVL-HPEWLANPVLVKMQMGSG------EYLNKACPKD---DFPLPRIDQLV
DATAGCELMSFLDAYSGYHQVFMVKEDEEKPSLIT---PFGTYCYIRMPFGLKNAGATFARLICKVLANQLGR----NVEAYVDDIVVKSK-KAFTHGKD
LQETFENLRKFSVKLNPEKCMFVRVGKLLGFLVSKRGIEANPDKIAIQQMEPTREMQRLTGRMASLSRFLSKSAERGLPFF------------------K
TLRAVNNYLHNMPTLSSPQKGEPLLLYVAA-TPVTVSAVLEQGKQMPVYFVSEALQGPKTRYIEVEKMIYAIRKLRHHDITIPSTYPIGEVLSRIAKWAM
ELLPF--------DLKYTSRTVLAKFVVEWTLE--EEKPWTVFSDGACNATGAGAAAVVTPMKQKYSARLNSTNNTAEYEGVLLAMRKSRARLIIKTDSK
LVAGHFSKTFEAREEIMTKYLELNERHLGITVKAITRE----ENGEADELTKAAAA--
>tr|Q6F342|Q6F342_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OJ1122_B08.3 PE=4 SV=1
---EMIEHSLNVKEDARPIKQRLRRFAQDRKDAIKEELTKLLAAGFIMEVL-HPDWLANPVLVWKKTGQWRMCVDYIDLNKSCRKD---PFGLPCIDQVV
DSTAGYQFEGIRLLEDLVHHTIWSLLL------------------FTMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYVDDVAVKTI-QKDDLIAD
LEETFASICAFRMKLNPEKCTFVSSGKPLGFMVSRRGIQANPEKINILNMKPQKDVQKLSGCMAALDRFISRLGERGMPFF------------------K
LLKKTDNLLTTPLVMASPHPQELLLLYVSA-TSQVVSTVLDREDQQPIYFVSEVLADSKTGYPL-------------HLVTVVTSFPLRDILHRITKWAL
ELMSL--------DLSFKPRTALADFVAEWTED--KLEYWTMHFDGDSVSGGSWRF----P---------------------------------------
-----------------VGPQSKLEDKDGLELTHVLRH----DNEAADRLANFGSK--
>tr|Q7XMN6|Q7XMN6_ORYSJ OSJNBb0076A11.6 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0076A11.6 PE=4 SV=2
---EVIEHSLHVKEDAKPIKERLRRFAQDRKDAIKEELTKLLAADFIKEVL-HPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKD---PFGLPRIDQ--
----IRLKESDCLKTSFITPFGAYCYI-------------------TMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYVDDVVVKTK-QKDDLIAD
LEETFASIRAFRMKLNPEKCIFVPSGKLLRFMVSQRGIQANPEKINILNMKPQKDVQKLTGCMAALSWFVSRLGERGMPFF------------------K
LLKKTDNLLTTPPVLASPHSQEPLLLYVSG-TSQVVSTVLEREEQRPIYFVSEVLADSKTRYPQS-----------------------------------
---------------------ALADFLAEWTEY--KMEYWTIHFDGSKRLTGAEARVVLSPTGESYVLQIHASHNVAEYEALLHGLRIAISQLIVRGDSQ
LVVNQVMKEWSCLDDNMTAYRQKLEDKDGLELTHVLRH----NNEAADRLANFGSK--
>tr|Q10BP1|Q10BP1_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g59500 PE=4 SV=1
---EVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKD---PYPLPRIDQIV
DSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFIT---PIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR----NVEAYVDDLVVKTR-NQETLLSD
LAETFESLRSARIKLNPDKCVFVPAGKLRGFLVSARGIEANPEKIRIERMRPLRDVQCVTGCMAALSRFISRLGEKALPLF------------------K
LLKRSGPYLSSPPVLVAPEPDEPLLLYMAA-TPQVVSAALERD-LRHYFQAHRVTVVT---S---YPLGQIL-GTGR--AIELSEF-D-LRFE--PRHAI
KSQAL--------ADFVA----TPAPE-----PLPHTAYWVMQFDGSLSLQGAGAGVTLSPSGDRYLVRLDATNNMAEYEGLLAGLRVAAGRLLVLGDSQ
LVVNQVCKEYRCSDPQMNAYVRRMERHDGIELRHVPRR----DNAVADELSMLASS--
>tr|Q7XQB4|Q7XQB4_ORYSJ OSJNBa0088K19.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0088K19.10 PE=4 SV=2
---KVIEHRLAVQTGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPIVVPKANGKLRMCIDYTDLSFAVAES---PLPVATLAGAV
ADVVADVIGVVRHAYSGYHQIRMAREDEEKIAFIT---PIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR----NVEAYVDDLVVKTR-NQETLLLD
LAETFESLRSARIKLNPDN---------------------------------LRDVQCVTGCMAVLSRFISRLGEKTLPLF------------------K
LLKRSGPYLSSPPVLVAPEPDEPLLLYLAE-TPQVVSAALERDDQRPVYFVSEALRDAKTRYPQAQKMLYAIRKLRHHRVTVVTSYPLGQILHRVVKWAI
ELSEF--------DLHFEPRHALADFVAEWTEHLPHTAYWVMQFDGSLSLQGTGAGGTLSPSLDRYMVRLDATNNMAEYEGLLAGLRVVAGRLLVLGDSQ
LVVNQVSKEYQCSDPQMDAYVRRMERHDGIELRHVPRR----DNAVADELSRLAS---
>tr|Q2QZU9|Q2QZU9_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g44770 PE=4 SV=1
---SLIEHNLAIKSGYKPKKQKLRRMSTDRQQAAKIELEKLLKAKVIREVM-HPEWLANPVLVKKANGKWRMCIDFTDLNKACPKD---DFPLPRIDQLV
DATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFIT---PFGTYCFIRMPFGLKNAGATFARLIGKVLAKQLGR----NVEAYVDDIVVKSK-QAFTHGKD
LQETFENLRKCSVKLNPEKCVFVRAGKLLGFLVSKRGIEANPDKIAIHQMEPTREVQRLTGRMASLSRFLSKSAEKGLPFF------------------K
TLRGANTYLHEMPTLASPPKGQPLLMYVAA-TPATVSAVLEEERQVPVYFVSEALQGPKTRYSEVEKLIYAIRKLRHHDITIPSAYPIGEVLTRIAKWAM
ELLPF--------DLKYTSRTVLADFVAEWTVE--VEKPWIVFSDGACNAAGAGAAAVVTPMKQKYSVQLASTNNTAEYEGVLLAMRKARARLIVKTDSK
LVAGHFSKSFEAKEKTMAKYLELNEKHLGITVKAITRE----ENGEADELAKAAAT--
>tr|A0A087FWQ8|A0A087FWQ8_ARAAL Uncharacterized protein OS=Arabis alpina GN=AALP_AAs39363U000200 PE=4 SV=1
---SITSHRLNVDPTFKPIRQKRRKLGSERTKAVNDEVTKLLDAGSITEVQ-YPEWLANPVVVKKKNGSWRVCVDFTDLNKACPKD---SYPLPHIDRVV
EATAGNELLSFMDAFSCYNQIEMHPDDREKTAFIT---ERGTYCYRVMPFGLKNAGATYQRLVNKMFAEQLGD----TMEVYIDDMLVKSE-KAGDHVEH
LRSCFEILNQYGMKLNPSKCTFVTSGEFLGYIVTQRGIEANPKQIAIANLPSKREVQRLTGRIAALNRFISRSTDRSLAFY------------------Q
LLRGNKRYLTTPPILSKTELGETLYLYVSI-TDAAVSGVLEDRDQKPIFYVSKALDGAESRYPTLEKLALAVRKLRPHTIAVMSTQPLRAILHRMARWAV
ELSEF--------DLEFPIRTVLADFVTELPE-VGRSDIWNLYVDGSASRHGSGIGILLSHSGDEQSFRLGASNNEAEWEALIAGLRLAKERIHAFSDSQ
LVTNQLNHEYDARDDRMSAYLQIILNHDSFLLSKVPRA----ENSKADALASLGSS--
>tr|Q9SJP0|Q9SJP0_ARATH Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g15410 PE=4 SV=1
---AVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVR-YPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKD---SFPLPHIDRLV
EATAGNELLSFMDAFSGYNQILMHQNDREKTVFIT---DQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDH----SMEVYIDDMLVKSL-RAEEHITH
LRQCFQVLNRYNMKLNPSKCTFVTSGEFLGYLVTRRGIEANPKQISIIDLPSTREVQRLIGRIAALNRFISRSTDKCLPFY------------------Q
LLRANKR-------------GETLYLYIAV-STSAVSGVLEDREQHPIFYVSKTLDGAELRYPTLEKLAFAVRKLRPYTVEVLTNQPLRTILHRLAKWAV
ELSEY--------DIAYKNRTRAPTRPYR-------------------------IP--------RKVDLARASNNEAEYEALIAGLRLAHGKIQAYCDSQ
LVASQFSGNYEAKNERMDAYLK-LSYNEVFELTKIPRS----DNAPADALAVLAST--
>tr|Q9LMV1|Q9LMV1_ARATH F5M15.26 OS=Arabidopsis thaliana PE=4 SV=1
---AITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVK-YPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKD---SYPLPHIDRLV
EATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVT---DRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGR----TVEVYIDDMLVKSL-KPEDHVEH
LSKCFDVLNTYGMKLNPTKCTFVTSGEFLGYVVTKRGIEANPKQIRILELPSAREVQRLTGRIAALNRFISRSTDKCLPFY------------------N
LLKRRAQYLSTPPILVKPEVGETLYLYIAV-SDHAVSSVLEDREQRPIFYTSKSLVEAETRYPVIEKAALAVRKLRPHTIAVLTDQPLRVALHRMTKWAV
ELSEY--------DIDFRPRPVLADFLIELPAEGNRGEEWSLYVDGSSSARGSGIGIRLSPTAEEQSFRLRATNNVAEYEVLIAGLRLAAGTIHAFTDSQ
LIAGQLSGEYEAKNEKMDAYLKLMTKDENFKLSKIPRG----DNAPADALAALALT--
>tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein OS=Phaseolus vulgaris GN=BA23 PE=4 SV=1
---DVITHRLSVYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKAH-YTTWLANVVMVKKTNGKWRMCVDYTDLNKACPKD---SYPLPTIDRLV
DGAAGHQILSFLDAYSGYNQIQMYHRDREKTAFRT---DSDNFFYEVMPFGLKNAGATYQRLMDHVFHDMIGR----NVEVYVDDIVVKSD-SCEQHVSD
LKEVFQALRQYRMRLNPEKCAFVEGGKFLGFMLTHRGIEANPEKCKITEMRSLKEIQRLVSRLTSLSRFVPKLAERTRPII------------------K
LLKKTSKFLASPPVIQKPNAREPIVVYLAV-SNEAVSSALEIKEERPVYFVSRVLHDAETRYQMVEKVAFALRRMRMHKVIVRTNYPIMKILTRMIGWAV
ELSEF--------HIEYQPRGALADFTAELTTE---TPRWTLYVDGSSNSRSSGAGVVLGPGEIEQAMKFETSNNQAEYEAIIAGLHLAIENITCKSDSR
LVVGQLTGEYEVRETLLQQYFHNLLNRKEISFQHVRRE----NNTRADALSRLATL--
>tr|Q6MW78|Q6MW78_ORYSJ B1248C03.19 protein OS=Oryza sativa subsp. japonica GN=B1340F09.5 PE=4 SV=1
---EVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKD---PYPLPRIDQIV
DSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFIT---PIGTYCYTTIPFGLKNAGPTFQRTTRISLGSQIGR----NVEAYVDDLVVKTR-SQESLLSD
LAETFESLRSARIKLNPDKCVFVPAGKLLGFLVSARGIEANPEKIRIERMRPLRDVQCVTGCMAALSRFISRLGEKALPLF------------------K
LLKRSGPYLSSPPVLVAPEPNEPLLLYLAA-TPQVVSAALERDDQRPVYFVSEALRDAKTRYPQAQKMLYAIRKLRHHRVTVVTSYPLGQILHRVVKWAI
ELSEF--------DLHFGPRHALADFVAEWTEPLSHTAHWVMQFDGSLSLQGAGAGVTLSPSGDRYLVRLDATNNMAEYEGLLAGLRVAAGRLLVLGDSQ
LVVNQVCKEYRCSDPQMDAYVRRMERHDGIELRHVPRR----DNTVADELSRLASS--
>tr|Q01KC4|Q01KC4_ORYSA H0215F08.6 protein OS=Oryza sativa GN=H0215F08.6 PE=4 SV=1
---EVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVL-HPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKD---PFGLPRIDQVV
DSTAGCELLSFLDCYSGYHQIRLKESDCLKTPFIT---PFGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYVDDVVVKTK-QKDDLISD
LEETFASIRAFRMKLNPEKCTFVPSGKLLGFMVSHRGIQANPEKITILNMKPQKDVQKLTGCMAALSRFVSRLGERGMPFF------------------K
LLKKTDHLLTEPPVLASPHPQEPLLLYVSA-TSQVVSTVLEREEQRPIYFVSEVLADSKTRYPQVQKLLYGIRKLSHHSVTVVTSFPLGDILHRIAKWAL
ELMSL--------DISFKPRIALADFVAEWTED--KMEHWTMHFDGSKRLSGTGAGVVLSPTGESYVLWIHASHNVAEYEALLHGLRIAISRLIVRGDSQ
LVVNQVMKEWSCLDDNMMAYRQKLEDKDGLELSHVLRH----NNEAADRLANFGSK--
>tr|Q5H9V9|Q5H9V9_ORYSJ B1168G10.11 protein OS=Oryza sativa subsp. japonica GN=B1168G10.11 PE=4 SV=1
---GVISLRSDAKTKKNPLDPSYPTKTADRKDAIKEELTKLLAAGFTKEVL-HPDWLANPVLVRKKTAQWRMCVDYTDLNKSCPKD---PFGLPRIDQ--
----------------------------------------------------------------------IGR----NVEAYVDDVVVKTK-QKNNLIAD
LKETFASIRAFRMKLNPEKCIFVSSGKLLGFMVSHRGIQANPEKINILNMKPQKDIQKLTGCMVALSRFISRLGERGMRFF------------------K
LLKKTDNLLTTPPVLASPHLQEPLLLYVSA-TFQVVSTVMERED---VYFVSEVLTNSKTRYHQVQKLLYGVRKLSHHSVTVVTSFPLGDILHRIAKWAL
ELMSL--------DLSFKPRTALADFVAEWTED--KMEYWTMHFDGSKRLSGTGAGVVLSPTGENYVLWIHASHNMAEYEALLHGLRIAISHLIVRGDSQ
LVVNQVMKEWSCLDDNMAAYRLKLEDKDGLELTHVLRH----NNEAADRLANFGSK--
>tr|Q7XBD9|Q7XBD9_MAIZE Putative gag-pol OS=Zea mays GN=Z013I05_8 PE=4 SV=1
---ELAEHKLKVYPQARPIRQKLRRFTPDKREAIRAELARLVAAGFIREVL-HPEWLANPVLVLKKKVDWRMCVDYTDLNKHCPKD---PFGLPRIDQVV
DSTAGCSVLSFLDCYSGYHQISLAKEDEEKTAFIT---PFGAFCYTSMSFGLKNAGATYQRAIQTCLADHWGK----RVEAYVDDVVIKTE-NSENFIED
LQLVFNSLRRYRWKLNPEKCVFVPAGKLLGFIVSHQGIEANPDKIEIMKMEAQKKVQRLTGCMAALSRFISRLGEKGLPFY------------------K
LLKKVDKFLTTPPVLKPPRRAEDLLLYISC-TT-----------------------------HVVQKLLYAVRKLRHHKVIVVTGFPIGDILHRIAKWAC
ELGSH--------DIEFRPRTALVDFVSEWTVP--TTEVWRMYFDGSLKLQGAGAGILFAPGGEKYALQLLASNNAAEYEALIHGLNIAISRLMVYGDSL
VVISQINKEWDCSSDSMGKYCTKLEDKEGLEFHHIERD----RNTAADILSKLGSG--
>tr|Q75I41|Q75I41_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=Os03g40970 PE=4 SV=1
---EVIEHRLAVRPGATPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKD---PYPLPRIDQIV
DSTAGCDLLCFLDAYSGYHQIRMAREDEEKTAFIT---PIGTYCYTTMPFGLKNADAQPRDLTLGSSGNFQKS----PL---------RP----------
---HKTEPRQV-----RVQCACQ-ASRVLGLCPRHRGQ---PREDTYRADAPLRDVQCV----AALSRFISRLGEKALPLF------------------K
LLKRSGPYLSSPPVLVAPEPDEPLLLYLAA-------------DQRPVYFVSETLRDAKTRYPQAQKMLYAIRKLRHHRVTVVTSYPLGQILHRVVKWAI
ELSEF--------DLHFEPRHALADFVAEWTESLPHTAYW--------------------------------------YEGLLAGPRVAAGRLLVLGDSQ
LVVNQVCKEYRCSDPQMDAYVRRMERHDGIELRHVPRR----DNAVADELSRLASS--
>tr|Q10IF5|Q10IF5_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g35390 PE=4 SV=1
---DLIMHHLAVKPNIRPRKQKLRKMSADRQEAAKTEVQKLLRPGVIQEID-HLEWLANPVLVRKSNGKWRTCVDFTDLNKACPKD---DFPLPRIDQLV
DSTAGCELMSFLDAYSGYHQIHMNPLDIPKTSFIT---PFGTFCHLRMPFGLRNAGATFARLVYKVLGKQLGR-------------------KAFDHAID
LQETFHNLRAAGIKLNPEKCVFVRAGKLLGFLVSERGIEANPEKIDIQQMKPVHEVQKLAGRIAALSRFLSKAAERGLPFF------------------K
TLRGAGKYLQSPPALISPPPGSELLLYLAA-SPVAISAALETEGQKPVYFVSEALQGAKTRYIEMEKLAYALRKLKHNKVIVPSQYPLGEILRRLSKWAA
ELSPF--------DLYFVAHSVLADFVAEWTAP--AEQFWVMCSDGSWSHKGAGVATVLSPNGVRYAARLQTTNNVAEYEAVLLGLRKAKARLLIRTDSK
LVAGHVDKSFEAKEEGMKKYLESMEKCTGITVKHLPRD----QNEEADALAKSAAC--
>tr|Q2QWC7|Q2QWC7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g09800 PE=4 SV=1
---DLIMHHLAVKPDARPRKQKLRKMSADLQEAAKAEVQKLIKAGVVREID-HPEWLANPILVWKSNGKWRLCVDFTDLNKVCLKD---DFPLSRIDQLV
DSTAGCELMSFLDAYSGYHQIHMNPADIPKTV---------FITPFGTFCHLRMPFGLRNTGATFAKL--------------------------------
--KTFDNLRTAGMKLNPEKCVFVRAGKLLGFLVSERGIEANPEKIDIQQMKPVREVQKLAGRIAALCRFLSTAAERGLPFF------------------K
TLRGAGKYLQSPPDLVSPAPGSDLLLYLAA-SPVAVNAILETEGQKPVYFVSEALQGAKIRYIEMEKLAYALRKLKHHKVTVPLQYPLGEVLRRLSKWAA
ELSPF--------DLHFVARTILADFVAEWTAP--AKQPWVMYSDGSWSHKGASAVAVVPPGGVRYAARLQTTNNTAEYEAVLLGLRKAKARLLIRTDSK
LEASHVDKSFEPKEEGMKR------------------G----QNKEADALAKSAAC--
>tr|Q2QXU7|Q2QXU7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g04840 PE=4 SV=2
---DLIMHHLAVKPGAKPRKQKLRKMSADRQEAAKAEVQKLLKAGVIQEID-HPEWLANPVLVRKSNGKWRMCVDFTDLNKVCPKD---DFPLPRIDQLV
DSTAGCELMSFLDAYSSYHQIHMNPADIPKTAF------ITSFGTFCHLRMPFGLRNAGATFAKMVYK------------AYLDDIVVKSR-KTLDHASD
LQETFNNLRVAGMKLNPEKCVFVRAGKLLGFLVSERGIEANPEKIDIRQMKPVREVQKLAGRIAAISRFLSKAAERGLPFF------------------K
TLRGAGKYLQNPPTLVSPTPGSEMLLYLAA-SPV--------------------------------------------------AYPLGEVLWRLSKWAA
ELSPF--------DLHFVTRTVLADFVAEWTAP--VEQPWVMHSDGSWSQKGAGAAAVLSPGGVQYAARLQTTNNMAEYEAVLLGLRKAKECLLIRTDSK
LVASHVDKSFEVKEEGMKKYLESMEKCAGITVEHLPRG----QNEEADALARSAAC--
>tr|Q01HA3|Q01HA3_ORYSA OSIGBa0139N19-OSIGBa0137L10.12 protein OS=Oryza sativa GN=OSIGBa0139N19-OSIGBa0137L10.12 PE=4 SV=1
---DLIMHHLAVKLDAKPRKQKLRKMSADRQEAVKAEVQKLLRAGVIQEID-HPEWLANPVLVRKSTSKKRMCVDFTDLNKACPKD---DFPLPRIDQLV
DSTAGCELMSFLDAYSGYHQIHMNPPDIPKTAFIT---PFGTFCHLRMPFGLRNTGATFARLVYKVLCKQLGR----NVEAYVDDIVVKSR-KAFDHVSN
LQETFDNLRAAGIKLNPEKCVFVRAGKLLGFLVSEKGIEANPKKIDIQQMKPVHEVQKLAGRIVALSRFLSKAAERGLPFF------------------K
TLRGSGKYLQSPSALISPAPRSKLLLYLAA-SPVAVSAVLETEGQKPVYFVSEALQGAKTRYIEMEKLAYA-------------LYPLGEILRRLSKWAA
ELSPF--------DLRFVARTVLADCVAEWTTP--VEQFWVMCSNGSWSHKGVGIAAVLSPNGVRYAARLQTTNNAAGYEAVLLGLRKAKARLLIRTDSK
LVAGHVDKSFEAKEEGMKRYLESMEKCTGITVEHLPRG----RNEEGDALAKSAAS--
>tr|Q53JL3|Q53JL3_ORYSJ Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g14460 PE=4 SV=1
----VIEHKLMVQPDAKPVKQKLRRFAPDRKQAIREELDKLLKAGFIREVL-HPEWLANPVMVRKANGKWRMCVDFTDLNKACPKD---HFPLPRIDQLA
GCELLSFLDAYSGYHQISMAKEDEEKTAFITP-------FGVFYYVKMPFGLITAGNTFQRTVQGALSNQLGN----NVEAYVDDIVVKTK-TSDSLIDD
LRETFDNLRRYRLMLNPEKCTFVPSGKLLGFLVSGRGIEANPEKIQMKSPTRLKEVQKLTRCMAALCRV-TVVSSFPLGEVVRN----------------
------------------------------------------KDV-------------------------------------VG---------RIAKWVV
ELSQF--------DVHFVPRTVLADIVADWENSNSQTETWTMAFDSALNSQGAGAGFITSPSRDNHAIHLNATNNIAEYEGLLAGIRAAAKRLIVKGDSE
LVANQVHKDYKCSNPELSKYLAELKRFDGIEVRHVYRK----VNIEPDDLARCASRRE
>tr|Q2QV26|Q2QV26_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g14260 PE=4 SV=1
----VIEHSLHVKEDAKPIKQRLHRFAQDRKDAIKEELTKLLAAGFIKEVL-HPDWLANPVLVRKKTGQWRMCVDYTDLYKSCPKD---PFGLPRIDQVA
GYELLSFLDCYSGYHQIRLKESDCLKTSFITP-------FGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGR----NVEAYVDDIVVKTK-QKDDLIAD
LEETFTSIRAFKMKLNPEKCIFVPSGKLLGFMVSQRGIQANPEKINMKPPSSQKDVQKLTGCMAALSRV-TVVTSFPLGDILHN----------------
------------------------------------------REA-------------------------------------NR---------RIAKWAL
ELMSL--------DISFKPRTALADFLAEWQEM-PEEEYWTMHFDGSKRLTGTGAGVVISPTGESYVLWIHASHNVAEYEALLHGLRIAIRRLIVRGYSQ
LVVNQVMKEWSCLDDNMTAYRQELNKFDGLELTHVLRH----NNEAADRLANFGSKRE
>tr|L0P1J4|L0P1J4_9POAL PH01B001G05.12 protein OS=Phyllostachys edulis GN=PH01B001G05.12 PE=4 SV=1
-----------------------ERFAPDRRDAIKSELDKLLKAGFIREVD-HPEWLPYPVMVRKSNGKWRMCVDFTDLNKACPKD---DFPLPRIDQLV
GCEVLSFLDAYSGYHQINMCLDDEEKTTFITP-------FGIFCYVKMPFGLKNAGASFQRLTQSTFSSQLGR----NLEAYVDDLVVKSI-KRLNHITD
LQETFDNIRKHRLKLNPKKCVFVSSGKLLGFLVSIRGIETNPEKIQMRPPTTKKEIQKLTGCMAALSRFIARLGELPFFKLLRKH----EGFEWSKEANA
VLEDVNRYLTSAPTLVSPRQEETLLIYLVAT-PQAVSVVLVVERERPVYYAHKIVVPS-------EFPLGAILQNR-------------ETAGRMAKWSV
ELGEF--------DLRFVSRTILADFVAEWTNPEPVQDQWTMYFDGSLTLSDSGAGVLVSPTGKKYAIQLNATNNVAEYKGLLAGIRAAKCRLLMRGDSQ
LVVNQVGKEYQ-----------------------------------------------
>tr|I6RP65|I6RP65_9GAMR Pol (Fragment) OS=Megaderma lyra retrovirus PE=2 SV=1
----------------------------------------------------------------------------------------------------
-----------------PLGKLKNKKTTVIG-------ATGQPTWTRLPQGFKNSPTLFDKALHRDLATFRAENPQVTLLQYVDDLLLATA-TESECRQG
TERLLTELGELEYRASANKAQLRTEVTYLGYTLREGKRWTEARKKRIPTPTPPRQVREFLGTAGFCRLRIPGFAAAPLYPLTKEG----GEFKWTPEHQE
AFDKIKQALLSAPALALPDLTKPFTLYVDERA-GVAQGVLTQTLGRPVAYLSKKLDPVASGWPSCLKAITAVALLVKDADKLLGQQVTIVAPHAPDRWMT
TARMTYQPATLLPETEDSSPTHHADITRRDLRDQPWAGSPTWYTDGSWFVEGKRRAGAAVDGKRIWASSLPTSAQKAELVALIQAPRLAEKNINIYTDSR
YAFATAHIHDIKNKEEMLSLLEAIHLPAKVAIIHCPGHQKAKGNQMADLVAKQTA---
>tr|Q88285|Q88285_9RETR Gag-pol polyprotein OS=Snakehead retrovirus GN=gag-pol PE=4 SV=1
-----------------PKMIKQYPVPDASHASIKETVEALLEQGVLRKC--NSTVNSAIWPVGKPDGSWRLTIDYRPLNSAVS------CPYPTVASLK
KYQVYSSLDISNGFWSIRLEEECQYLFAFTFD-------TQQYTWTRLPQGFHASPGIFHQALYNGLASCKTASQGCKLLQYVDDILLMSE-DRDHHLRS
LAILLQGLKDLGVKINPKKSHFKDQVQYLGVNVGADTRSLDARSITLDIPLTVQGLRSALGLFNFCRAWIPEFSTQSLYDMLKGDCKSTDKLKWTEDNLN
KFKLLKDEVASACVLGLPDPTLPFRHLIGIR-QGHFLCSLVQKDDHVLGFYSRKMTPVESNLGICEQYAECAAWAISRKIIVTSHSPVFILPNVLARWHR
ILTQEITIQGWFPEPGEQHQCPHDDTITWRVSTRAMPTGEKWWIDGSRYDH--DKGGYVTGDKKNQGGALEVSAQVAELVALREALRLQ-RPLTLYTDST
YVLGICTKYLASNQNILQEIWQLIEHTQTLGIVKVKAHTQRKLNNDVDQPAKQYA---
>tr|Q8W0X7|Q8W0X7_MAIZE Putative prpol OS=Zea mays GN=Z178A11.12 PE=4 SV=1
----VNEHSLNVDPSFRPRKQRLRKMSDDKAKGARNEVKRLLSAGVIREV-KYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKD---EFPLSRIDSLV
SSELMSLLDCYSGYHQIWMKKEDEPKTSFITP-------SGTYCYLRMPEGLKNAGGSFSRMTAKVLHSQIGR----NVLTYVDDIIVKSM-KQENHIAD
LQETFANFRQAVLKLNPEKCVFVKKGKFLGCLVSTKGIEANPNKIEMEPPSTKKGAQRLTGRLASLNRFISGSAELPFFEVLKST----EVFQWGSAQQK
AFEELKQYLIDLTMLTPPAPGAPLLLYVAASH----SAPLKD-----I----------M--------------RNR----EATG---------RVGKWAA
ELNEF--------TIDYVHRSALADFIADWTPESKDVEAWTVFCDDSWGTFGAGAATLVTPSNVCFAVKLDCTNNIAEYEALLLWLRKLRRRAILKTDSQ
VIAGHVDKSS------------------------------------------------
>tr|Q01HI2|Q01HI2_ORYSA OSIGBa0142I02-OSIGBa0101B20.7 protein OS=Oryza sativa GN=OSIGBa0142I02-OSIGBa0101B20.7 PE=4 SV=1
-----------------------------------------------------PEWLANPVVVPKANGKLRMCIDYTDLNKACPKD---PYPLPRIDQIA
GCDLLCFLDAYSGYHQIRMAREDEEKTAFITP-------IGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR----NVEAYVDDLVVKTR-NQETLLSD
LAETFESLRTARIKLNPDKCVFVPAGKLLGFLVTARGIEANPEKIRMCPPSKLRDVQCVTGCMAALSRFISRLGALPLFKLLKRS----GPFIWTEEAER
ALTQLKAYLSSPPVLVAPEPDEPLLLYLAATPQVSI-T----PLTLFCWLQVSIFRRIGSRWLRLTP---------------------------------
--SEF--------DLHFEPRHALADFVAEWTSQLPHTAYWVMQFDGSLSLQGAGAGVTLSPSGDKYLVRLDATNNMAEYEGLLAGLRMATCRLLVLGDSQ
LVVNQVSKEYQCSDPQMDAYVRRMERHDGIELRHVPR----RDNAVADELSRLA----
>tr|Q53N58|Q53N58_ORYSJ Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g17150 PE=4 SV=1
----VIEHKLMVRPDAKPVKQKLQRFAPDRKQAIREELDKLLKAGFIREV-LHPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDH---FPLPQIDQLA
GCELLSFLDAYSSYHHINMAKEDEEKTTFITP-------FGVFCYVKMPFRLITTRNTFQRMVQGALNDQLGN----NVEAYIDDIVVKTK-KSDSLIDD
LQEMFDNLRRYRLMLNPEKCTFVPSGKLLRFLVFGRGIEANPEKIKMKSPTRLKDVQKLTGCMAALSRFVARMGGQPFFAMLKKQ----DKFVWTQEAED
AFIALKRYLSNPPVLVAPQPNEELFLYIAAT-PYSVSTVIVVERERPVYYVSEALYDAKTRYPQIQKLLYVVMTLRKHRVTVVSSFPLGEVVGRIAKWV-
-LADF------VADWTM------PDNR-PDS--QTDNETWTMAFDGRPTTQPST---------------------KGLLAGIRAAATLGLKRLIVKGDSE
LVANQVHKDYKYSSPELSKYLAELKRFDGIEVQHVYRK----DNIEPDDLARCASRR-
>tr|Q2QUL3|Q2QUL3_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g15870 PE=4 SV=1
------KHKLMVRPHAKPVKQKLRRFAPDRKQAIREELDKLLKAGFIREV-LHPEWLANPVMVRKANGKWRMNVDFTDLNKVCPKYH---FPLPRIYQLA
SYEFLSFLDTYSSYHQISIAKEDEEKTAFITP-------LGVFCYTKMPFGLISADNTYQRRIQGALGDQLRR----TVEAYVDDIVVKTK-TRDSLIDD
QRETFDNLRRYQMKLHPEKCTFVPSGKLLGFLVSRRGIEANAKKIKMKSPTRLNKVQRLTRCMASLSCFVTRMGGQPFFALLKKP----DKFEWTQEAEN
AFIALRHYLSNPPILVAPQLDKELFLYIATMS-YFVSTVIVIEKEHPVHYISEALHDAKTRYPQIQKLLCVVTMTSR-----------------------
KLCHYFQ------AHKTIPE----DRP----DDQTDNETWTMAFDGALNSQGAG-AVFVFPTGVQHAIHLNATNNTVEYEGLLTGIRVAIKRLIVKGDLE
LVANQVHKDYKSNPELAKYLTEV----DLIEVQHVYRKDNIEPNNLARH---------
>tr|Q5WMN7|Q5WMN7_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=P0683B02.1 PE=4 SV=1
----VIEHKLMMRPDAKPVKQRLRRFAPDRKQAIREELDKLLKAGFIREVL-HPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDH---FPLPRIDQLA
GCELLSFLDAYSGYHQISMAKEDEEKTTFITP-------FGVFCYVKMSFGLITAGNTFQRMVQGALRDQLGN----NVEAYVDDIVVKTK-TGDSLIDD
LRQTFDNLRRYRLMLNPEKCTFVPSGKLLGFLVSGRGIEANLEKIKA----------------------IENM---------------KSPTRLKEEAEE
AFVALKRYLSNRPVLVAPQPNEELFLYIAAT-PYSVSTVIVVERERPVYYVSEALHDAKTRYPQIQKLLYAVIKLRHHRVTVVSSFPLGDVVGCIAKWVV
ELSQF--------DVHFVPRTVLADFIAPDKSDNQVDNTWTMAFDGALNSQGAG-AGFISPSGDQHAIHLNATNNIVEYEGLLAGIRAGVKRLIVKGDFE
LVANQVHKDYKSNPELSKYLAEVSKLEDGIEVRHIY----RKDNIEQDDLARRASRRE
>tr|H3GQN1|H3GQN1_PHYRM Uncharacterized protein OS=Phytophthora ramorum PE=4 SV=1
-------CDIDVG-GAAPIAQRVRRVAPQFREKLSDLIKSLLSAKMIEPS--TSPWASPIVIIIKKNGDIRLCIDYRLVNSLTRLM---VYPMPLINDLD
KVLWYCSLDMASGFWVVSMTERARKISAFVTP-------FGLFEWTRMPFGLKNAPQIYQRLIDNALYGYLRINPGPSVRSYIDDILITAD-TWDSICEK
VEALLDACERWNLSISVVKSFWHRKVEYLGHRVSAEGLEANPKDLELPFPKTLRSMQSFLGSLNYYSRFIEDFAVAILYELREVDF---YEMHHGKHEDR
AMESDDTRVEDGPV---------IVVYAN---KWAISAALVQEHDWPVIFTSRTLKSNELNYGIVDKEVLALLRILDVCYTLLTNRSIKWLQGRLGRWAA
LLSEWTLIASITPRAEVDEALIAIAPKRTIVMTVELEELLVVSFDGSARVKRSAYAIVWLPEWSIISAASELTVNEAEYRGLLLGFKLLSGRVVICGDSN
LIIRQMRGEIDCKAPGLQ-ILRQMKAWPKHEFLHVK----RDWNQSADRLASAALQR-
>tr|Q7XNI8|Q7XNI8_ORYSJ OSJNBb0032D24.5 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0032D24.5 PE=4 SV=1
-SRSIVEHRLPIKPGVRPYQQPQRRCKAD----------------MLEPV--KAEWVSNIVPVIKKNGKVRVYIDFRDLDKATPKD---EYPIPVADQLS
GHKILSFMDGNAGYNQIFMAEEDIHKTAFRCPG-----AIDLFEWIVMTFGLKSAGAIYQRAMNYIFLDLIG----WLVEVYIDDVVVKSK-EIENHIAD
LRKVVERTRKYGLKMNPTKR------------------------L------------------------------EPFTPLLRLK--ADQEFTWGAEQQK
ALDNIKEYLSSPPVLIPPQKGIPFRLYLSD-GEKLIGSVLIQELERVVFYLSRRLLDAETRLRHYLNECTVICNADV--VKHM-----LSAPILVGKWIF
ALTEF--------DLRYESSKAIADFIVDHR-DDSIGSPWTLFFDGSVCTHGCGIGLVISPRGASFSYTIKATNNQAEYEAVLKRLQLLKDIIEIMGDSL
LVISQLAGEYEKNDTLINEKCRLMKGFRLVTLKHVSREQNVEANDLAQ----------
>tr|Q8S6L9|Q8S6L9_ORYSJ Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNBa0019N10.7 PE=4 SV=1
-SRSIVEHRLPIKPEVRPHQQPPRRCKAD----------------MLEPV--KGEWVSSIIPVIKKNGKIRVCIDFRDLNKATSKD---KYPMPVADQLS
GHKILSFMDGNAGYNQIIMAEEDIHKTSFRCPG-----AIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLIG----WLVEVYIDDVVVKSK-EIEDHIAN
LRKVFERTGKYGLKMNPTK-------------------------A------------------------------TK-----------------------
-GLSIKEYLSSPPVLIPSQKGIPFRLYLSA-GEKSIGSVLIQEIERAVFYLSRRLLDAETKLRHYLNECTVICKANV--IKYM-----LSAPILIGKWIF
SLTEF--------DLRYESPKAIADFIVDHR-DDSIGSPWTLFFDGSVCTHGCGIGLVISPRGANFAYTIKATNNQAEYEAVLKGLQLLMDAVEIMGDSL
LVINQLAGEYE-NDTIMNVKCQLMKEFRPVTLKHVSREQNIDANDLAQ----------
>tr|Q7XSP1|Q7XSP1_ORYSJ OSJNBa0070M12.15 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0070M12.15 PE=4 SV=2
-SRSIVEHRLPLKPGIRPHQQPPRRCKAD----------------MLEPV--KAEWVSSIVPVIKKNGKVRVCIDFRDLNKATPKD---EYPMPVADQLS
GHKILSFMDGNAGYNQIFMTEEDIHKTVFRCPG-----AIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLIG----WLVEVYIDDVVVKSR-EIEDHIAD
LRKVFERTRKYGLKMNPTKK------------------------L------------------------------EPFTPLLRLR--A-QQ-TWGAEQQK
ALDNIKEYLSSPPVLIPPQKGIPFWLYLSA-GDKSIGSVLIQELERVVFYLSRRLLDAETKLRHYLNECTVVCKADV--IKYM-----LSAPILVGKWIF
SLTEF--------DLRHESPKAVADFIVGHR-DGSIGLPWVLFFDGSVCSHGYGIGLVIAPWGASFAYAITVTNNQAEYEAVLKGLQLLQDAIEIMGDSL
LVISQLAGEYEKDDTLMYEKCRLISEFRLVTLRHISREQNIEANDLSQ----------
>tr|Q7XXJ2|Q7XXJ2_ORYSJ OSJNBa0094O15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0094O15.10 PE=4 SV=2
-SRSIVEHRLPIKPRVRPHQQLPRRCKAD----------------MLEPV--KAEWVSSIVPVIKKNGKVRVCIDFQDLNKATPKD---EYPMPVADHLS
GNKILSFMDGNAGYNQIFMAEEDIHKTAFRCPG-----AIGLFEWVVMTFGLKSAGATYQRAMNYIYHDLIG----SLVEVYIDDVVVKSK-EVDDHIAD
LRKVFERTRKYGLKMNPTKR------------------------K------------------------------DVTFRLSPGR--AHKNGDWLPEKKL
QLVNMSILLILLSPRPGCYKGVPFRLYLSA-GEKSISSVLIQELE----------------LRHYLNECTVICKADV--VRYM-----LSAPILIGKWIF
SLSEF--------DLRYESPKAIADFIVEHR-DDSVGSPWTLFFDGSVCTHGCGIGLVISPRGACFAYTIKETNNQAEYEAVLKGLQLLKDTIEIMGDSL
LVISQLTGEYEKSDTLVNEKCLLMKEFRLVTLKYVSREQNLEANDLAQ----------
>tr|Q7G4J7|Q7G4J7_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g11680 PE=4 SV=1
-----------------------KRFAPDRKQAIREELDELLKAGFIREVL-HPEWLANPVMVRKANGKWRICVDFTDLNKACPKDH---FPLPRIDQLA
GCELLSFLDAYSGYHQISIAKEDEEKIAFITP-------FGVFCYVKMPFGLITAGNTFQRTVQGALSNQLGN----NVEAYVDDIVVKTK-TSDSLRKR
S-------TN---SDDIASCSI------L---RKANPEKIKAIE-NMKSPTRLKEVQKLTGCMAALSIFVARMGGQPFFALLKKQ----DKFVWTQEAEE
TFIAFKRYLSNPPVLVAPQPNEELFLYIAAT-PYSVSTVIIVERERPVYYVSEALHDAKTRYPQIQKLLYAIIKLRHHRVTVVSSFPLGDVVSRIAKWVV
ELSQF--------DVHFVPRTVLADFVASWTSDNQGNETWTMAFDGALNSQGAG-AGFISPSGDQHAIHLNATNNTAEYEGLLAGIRAGAKRLIVKGDSE
LVTNQVHKDYKSNPELSKYLAEVLKRFDGIEVRHVY----RKDNVEPDDLARRASRQE
>tr|H3H9E7|H3H9E7_PHYRM Uncharacterized protein OS=Phytophthora ramorum GN=fgenesh1_pg.C_scaffold_2038000001 PE=4 SV=1
-------CDIDVQ-GHPPIKQRARRTPLRHLRKLYELLKGLLKARLVAFS--DSPWASPIVIVLKKNGDIRLCIDYKLVNAVTAIM---EYAMPLVDDLE
AYLWFCSLDAASGFWAIMMTMRARKVSAFVCA-------LGHFEWLRMPFGLKNAPMIYQRMIDNALWGFVQPEPDEDRRSFVDDICFGSE-TFDACLET
LDRLLQRFTECRISVSFTKSIFQPKVDFLSHEVSAEGIRADTKKMKLPFPASKKGMQSFLGALNYYSRFIQDFAVAALYQLKDEDFT---PSGSLSAAKR
SFAALQQKVAEAPILRHFDRDKEAHVTLFAN-EWALSSTLMQYHDHPVRFCGRVLKDAEMNYHPAEKEVLALLLVLKVYSQLVGRTIHVYTRFSTLEWVH
KSKTLFGRATHSPWHLVVNRVPTARMLYACL-PRSY-TGFVMSFDGSAKNGGYGSCSLWLPEWTVASAYLETTVNLAEYAGMSAALEHGAEDLVIVGDSR
LAIQQSLGVMACRKELMVQLNRLTTKLRSVKYLHVV----REFNAAADSLASEAL---
>tr|V9H0W7|V9H0W7_MOUSE Pro-Pol-dUTPase polyprotein (Fragment) OS=Mus musculus GN=pro-pol-dUTPase PE=4 SV=1
----------------KIVNQKQYCIPG-EIAEITATIKDLKDAGVVVPT--TSPFNSPIWPVQKTDGSWRMTVDYRKLNQVVTPIA---AAVPDVVSLS
PGTWYAAIDLANAFFSVPVHKDHQKQIAFSWQ-------GQQYTFTVLPQVYINSPALCHNLVRRDLDRLDLP-QSITLVHYIDDIMLVGP-SEQEVATT
LDSLVTHMRIRGWEINPTKIQGSTSVKFLGVQWCGACRKVKDKLLHLAPPTTKKEAQRLVGLFGFWRQHIPHLGLRPIYQVTRKA----ASFVWGLEQEK
ALQQVQAAVQAALPLGPYDPADPMVLEVSVADRDA-VWSLWQAPKRPLGFWSKALPSSADNYSPFEKQLLACYWALVERLTIETMRPELVLPASIIKWKW
YIRDR---ARAGPEGEEVAQMPMVSTPVTMPSHAPIEKTRAWFTDGSARYGTKWTAAALQPSGTT-LKDTGKSSQWAELRAVHMVLQFVCPDVRLFTDSW
AVANGLAGWSGGEKDIWGRSMWKWAKDVKIFVSHVNAHQKVTSNNQVDKMTRS-----
>tr|H3GXY1|H3GXY1_PHYRM Uncharacterized protein OS=Phytophthora ramorum PE=4 SV=1
--------------DAKPVTQRPRSVAPHVAIKVYELLKKLLETRLIEHS--ESPWASPIVIVLKKNGDIRMCIDYRIVNGFIRLS---NYPLPLIDDLE
RAMWFMSLDMASGFWAVRMTERAKLISAFVCP-------FGHFQWVRMPFGLKNAPLVYQHMINNCLWGFVRLGPVLGRSSYIDDIAHGAP-TWDELCND
LNALLYRLRYWSISVSLPKSEFKQTIPYLSHEIGAEGIRATPKIIELPFPTTLKGVQSFLGSLNYYHKFIEDFPAAVLYELTDEQVQAGR--D-LARAKE
AFAILKRKIVSTPMLRHPDRTKPFVIIPHAN-QWAACAVLGQEHGQPVRFTGRVLNEAELRYHIAEKEVIAVMRVLRFRTLLEGCPLVVYTRYSVLPWGV
ALSHYDLLAILGAGIT--PREHLDEIAPPVVSIEMLEGGIVMSFDGAAKTSRRGSCGLWLPEWTVRGFVLDVTVNDAEYYGLDMALENDVQDLVVVGDSR
IVIQQVQGLINCHQPNLQRRLAVLKEFQRLRLVHVKR----DFNQAADYLTSK-----
>tr|V9ENR9|V9ENR9_PHYPR Uncharacterized protein OS=Phytophthora parasitica P1569 GN=F443_14379 PE=4 SV=1
------VCDIDTG-DAKPVAQRVRRVAPQFRGKLSDLIKGLLSAKIIRVP--SSPWASPIVVIIKKNGDIRLCIDYRVVNSLTRLV---VYRMPLINDLD
KVLWYCSLDMASRFWVVEMTERARLVSIYPR-----LLDNALYGYLPIPEGSDQSGAVFQAGEPDFESLVLG------RRSNNDDILVTAE-SWESLCDK
VDRLLNACDRWDLSIGVAKCSWCRKVDYLGHRVSADGLEAHLKNLELLFPGTLRAMQSFLGSLNYYSRSLRIFAASILYELREIDFQKDERDKWD-RAQA
AFQMLKNKIATAPVLRHFDPDRVLVVVVYAS-DWAISAALVQEHDMPVAFTSRTLKPNELNYGMVEKEILALLRILDVRHST------------LADYGA
AI--PLDAGEHHARESVDSILSSIKQPRQLI-PVVLEELLVVNFDGSPRVGGACSAIVWLPEWIVESKYLPLTVNEAEYQGLLLGFDLDRGHLIICGDSN
LVIRQMRGEFECKAPGLAPLRRR----ALDRLRMWPAHEFLDWNQSADQLANTALH--
>tr|Q0Q533|Q0Q533_PHYRM Reverse transcriptase (Fragment) OS=Phytophthora ramorum PE=4 SV=1
------VCDIDVG-GAAPVAQRARKVAPQFREKLSDLIKSLLSAKMITPS--TSPWASPIVIIIKKNGDIRLCIDYRMVNSLTRLM---VYPMPLISDLD
KVLWYCSLDMASGFWVVSMTERARRISVYQR-----LIDNALHGHFRIRAGHDPSEPIFDSGEPEPRPSALE------RRSYIDDILVTAI-TWYRLCEK
VEALLDACERWNLSISVVKSFWRRKVDYLGHRVSVDGLEAHPKYLEIPFPQTLRSMQSFLGSLNYYSRFIEDFAAAVLYELREADFSIEDADRWA-RTKI
AFTMLKAKIVSTPVLRHFNPDRTPVIVVYAS-QWAISAALVQEHDTLVLSRHWTLAWLVNSAGFQGR---------------------------LGNWAA
LLS-EWTLASITPRAEVDETLIAIKQPRQTI-TMPPETLLVASFDGSARVSGAYSAIVWLPEWTIASEYMPLTVNEAEYRGLLLCFDMDRGRVVICGDSN
LVIRQMRGEIACKAPGLLLLREK----AMDRLRSWPRHDFLDWNQSADKLASEALQ--
>tr|W2YSA2|W2YSA2_PHYPR Uncharacterized protein OS=Phytophthora parasitica P10297 GN=F442_14657 PE=4 SV=1
------VCDIDTG-DAKPVAQRVRRVALQFCGKLSDLIKGLLSAKIIRVS--SSPWTSPIVVIIKKNGDIRLCIDYRVVNSLTRLM---VYPMPLVNDLD
KVLWYCSLDMASGFWVVEMTERARLHHTLG------QCTRATTNPARSTYSNDQSGAVFQAGEPDSGSPVLG------RRSYIDDILVTAE-SWKSLCDK
VDRLVNACDRWNLSISVVKSSWCRKVDHLGHRVSADGLKAHPKNLELPFPRTLRAMQSFLGSLNHYSRFIEGLAASILYELREIDFQKDERDKWD-RAQA
AFEMLKNKIATAPVLQHFDPKRVPVVVSYAE-A--------QRAQ-SVLL-------HPGHETDQGR---------------------------LGNWAA
LLS-PWTLASITPRESVDSILSSIKQPRQLT-SAVIEELLVVGFDGSARVGGACSAIVWLPEWIVESKYLPLMVNEAEYQPVVRLRSLGPGTPLQLGDTA
DTR---RDRVQGTRPD--PSSST----GIGSAENVAGPRVPQAGLGPKRGQELLLP--
>tr|W2VML8|W2VML8_PHYPR Uncharacterized protein OS=Phytophthora parasitica CJ01A1 GN=F441_22975 PE=4 SV=1
------VCDIDTA-DAKPVAQRVRRVAPQFRDKLSDLIKG---SKIIRVS--SSPWASPIVVIIKKNGEIRLCIDYRVVNSLTRLM---VYPMPLVNDLD
KVLWYCSLDMASGFWVVEMTERARMVSIYQR-----LLDNALYGYLRIPEGSDQSGAVFQAGEPDSGSPVLG------RRSYIDDILVTAE-SWESLCDK
VERLLNACDRWNLSISVVKSSWCRKVDYLGHRVSADGLEAHSKNLEFPFPGTLRAMQSFLGGLNYYSRFIEDLAASVLYELREIDFQKDERYKWD-RAQA
AFEMLKNKIVTAPVLRQFDPDRVTFTSRTVK-PNELSYGMVEKEISTVLMRHSTLAWLMRSSGLQDR---------------------------LGNWAA
LLS-PWTLVSITPRENVDSILSSIKQPRQQI-PAVIEELLVVSSDGSARVGGACSAIVWLPEWIVESKYLPLTVNEAEYQGLLLGFDLDRGRLIICGDSN
LVIRQMRGEIECKAPGLTPLRRR----ALDRLRTWPAHEFLDWNQSADRLANTALH--
>tr|V9FRB6|V9FRB6_PHYPR Uncharacterized protein OS=Phytophthora parasitica P1569 GN=F443_03141 PE=4 SV=1
------VCDIDTG-DAKPVAQRVRRVAPQFRDKLSDLIKGLLSAKIIRVS--SSPWASPIVVIIKKNGDIRLCIDYRVVNSLTRLM---VYPMPLVNDLD
KVLWYCSLDMTSGFWALEMTERARMVSVYQR-----LLDNALYGYLRIPEDSDQSGAVFQVGEPDSESPVLG------RRSYIDDILI------------
---------------CVVKSSWYRKVDYLGHRVSADGLEAHPKNLELPLPGTLGAMQSFLGSLNYYSRFIEDLAALILYELREIAFQK--------PSAG
TFEILKNKIAMAPVLRHFDPDRVPVVVVYAR-DWAISATLVQEHDMTVPFTSRTLKPNELNYGLQGR---------------------------LGNWAA
LLC-PWTLASITPRESVDSILSSIKQPRQQT-PAVIEELLVVSFDGSARVGGACSAIVWLPEWIVESKYLPLTVSEAEYQGPLLGFDLDRGRLIICGDSN
LVVSQMRGEIECKAPGLTPLRRR----ALDRLRAWPAHEFLDWNQSADRLANTALH--
>tr|W2VV05|W2VV05_PHYPR Uncharacterized protein (Fragment) OS=Phytophthora parasitica CJ01A1 GN=F441_21220 PE=4 SV=1
------VCDINVN-GHAPIKQRARRVPLRHLRKLYELIKGMLMAGLIAFS--DSQWASPIVIVMKKNGDIRLCIDYKMVNAITAIM---EYAMPLVDDLE
SYLWFCSLGAASGFWAIMMTLRARKISIYQR-----MIDNALWGFVQPKGGWKNSPIAFVSGEPSTLVPVFE------HRSFVDDICFGGE-TFDNCLAT
LDRLLSRFAECRISVSFTKSIFQSCVDFLSHEVSPAGIGADPKKMGLPFPTTKKGMQSFLGALNYYSRFIQDFAGATLYQLKDEDF-------LT-VARR
SFATLKQKVADAPILRHFDRGKDVHIMLFAN-EWALSTTLMQEHETQVYTRFSTLDWVHRSKSLFGR---------------------------AVQFSV
LLS-PWHLSTITNFVDLEDSLASVTKGLPTV-RMDYYRGFVMSFDGSAKTFGSCSWIIWLPEWQIASAYLETTVNLAEYTGMNHGVLHGVEDLVIVGDSR
LAIQQSLGVIVCRKESIIALLNR----HKELTARLRSTKYLEYNAAADSLASETLE--
>tr|Q10HQ6|Q10HQ6_ORYSJ Transposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g38284 PE=4 SV=1
-----IEHKLMVRPDAKLVKQRLRRFAPDRKQAIQEELDKLLKAGFIREVL-HPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHFPPRIDQLVDSTA
GCELLSFLDAYSGYHQISMAKENEEKTVFITP-------FGVFCYVKMPFGLITTGNTFQRTVQGALSNQ----LGNNVEAYVDDIVVKTKTSDSLIDDL
RET-------FDNLGRYRLMLNLEKCTFE-------------------------------------------------------------------EAEE
AFIALKRYLSNPPVLVAPQPNEELFLYITAT-PYSVSTVIVVETERPVYYVSEALHDAKTRYPHIQKLLYAVRKLRHHRVTVVSSFPLGDVVGRIAKWVV
ELSQF--------DIHFVPRTILADFVADKSDNQGDNETWTMAFDGALNSQGARAGFILSLSGDQHAIHLNATNNTAEYEGLLAGIRAAAKRLIVKGDSE
LIANQVHKDYKTNPELSKYLAEKLERFDGIEVRHVY----RKDNIEPDDLARRASRRE
>tr|Q6AV13|Q6AV13_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OJ1354_D07.7 PE=4 SV=1
----VIEHKLMVRPDAEPIKQKLRRFAPDRKQAIREELDKLLKAGFIREVL-HPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHFPPQIDQLVDSTA
ACELLSFVDVYSGYHQISMAKEIEEKTSFITP-------FAVFCYL--------------------GN---------NVEAYVDDIVVKTKTSDSLIDDL
RETFDNLRRYRLMLNPEKCTFGVPLGKLLGFLVSGRGIEANPENIKMKSPTRLK-----------------------------------------EEVEE
AFIALKCYLSNPPVLVALQPNEELFLYIAAT-PYSVRTVIVVERERPVYYVSEALHDVKTRYPQTQKLLYAVRKLRHHGVTVVSSFPLGDVVGRIAKWVV
ELSQF--------DVYFVPRTVLADCVANRLDSQTDNETWIMAFDGALNSQGAGAGFILSPSGEQHAIHLNATNNTAEYEGLLAGIRAAVKQLIVKGDSE
LVANQVHKDYKSSPELSKYLAEKLERFDGIEVRHVY----RKDNIEPDDLARRASTQE
>tr|Q7Y1N5|Q7Y1N5_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0053G10.26 PE=4 SV=1
----LIMHHLAVKPNIRPRKQKLRKMSADRQEAAKTEVQKLLRPGVIQEID-HLEWLANPVLVRKSNGKWRTCVDFTDLNKACPKDDFPPRIDQLVDSTA
GCELMSFLDAYSGYHQIHMNPLDIPKTSFITP-------FGTFCHLRMPFGLRNAGATFARLVYKVLGKQ----LGGIE---------------------
---------------------------------------ANPEKIDMKPPSSVH-----------------------------------------EECQA
AFDELKQYLQSPPALISPPPGSELLLYLAAS-PVAISAALVQETEKPVYFVSEALQGAKTRYIEMEKLAYALRKLKHNKVIVPSQYPLGEVTGRLSKWAA
ELSPF--------DLYFVAHSVLADFVAE--DPEPAEQFWVMCSDGSWSHKGAGVATVLSPNGVPYAARLQTTNNVAEYEAVLLGLRKAVRRLLIRTDSK
LVAGHVDKSFEKEEGMKKYLEASMECFTGITVKHLP----RDQNEEADALAKSAACGG
>tr|Q2R5Q8|Q2R5Q8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g24150 PE=4 SV=1
----VTEHKLMVRPDAKPVKQKLRRFAPDRKQAIREELDKLLKAGFIREVL-HPEWLANPVMVRKANGKWRMCVDFTDLNKASPKDHFPPRIDHLVDSTA
GCELLSFLDAYSGYHQISMAKEDEEKTSFITP-------FGVFCYVKMPFGLITTGNTFQRTVQGALNDQ----LGNNVEAYVDDIVVKTKTSDSLIDDL
WETFDN-LRRYRLMLNPEKCIGVPSGKLLGLLVSGRGIEANPEKIKMKSPTRLK-----------------------------------------EEAEE
AFIALKRYLSNPPVLVAPQPNEELFLYIAAT-PYSVITVIVVERERLVYYVSEALHDAKTRYPLIRKLLYAVRKLRHQRVTVVSYFLLGDIVGRIAKWVV
ELSQF--------DVHFVPRTVLADFVADRSDNQTDNETWTMVFDGALNSQGAGAGFILSPSRDQHAFHLNATNNTAEYEGLLAGIRVAVKRLIVKGDSE
LVANQVHKDYKSSPELSKYLAEKLEIFDGIEVRHVY----RKDNIEPNDLARQA----
>tr|Q7XXG4|Q7XXG4_ORYSJ OSJNBb0089K24.6 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0089K24.6 PE=4 SV=2
--------------------------------------------------------LANLVMVRKANGKWRMCVDFTDLNKACPKDHFPPRIDQLVDSTA
GCELLSFLDAYSGYHQISMAKEDEEKTSFITP-------FGVFCYVKMPFGLITAGNTFQRTVQGALSDQ----LGNNVEAYVDDIVVKTKTGDSLIDDL
RETFDNLRRYRLMLNPEMCTFGVPSGKMLGFLVFGRGIEVNPEKIKMKSPTRLK-----------------------------------------EEAEE
AFVALKRYLSNPPVLVAPKPNEELFLYIAAT-PYSVSTVIVVERERPVYYVSEALHDAKTRYPQIQKLLYAVRKLRHHRVTVVSFFPLGDVVGRIAKWVV
ELSQF--------DVHFVPRTVLADFVADKSDNQVDNETWTMAFDGALNSQGAGAGFILSPSGDQHAIHLNATENTAEYEGLLAGKGKHARRRRPTARR-
-RCNGVREEVKKGEEATVLTEQ--REVDGVAG---------GEEETARSFGSSASSSF
>tr|Q75K86|Q75K86_ORYSJ Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OJ1118_C04.6 PE=4 SV=1
----VIEHKLMVRPDAKLVKQKLRRFAPDRKQAIREELDKLLKAGFIGEVL-HPEWLTNPVMVRKANGKWRMCVDFTDLNKACPKDHFPPRIDQLVDSTA
GCELLSFLDAYSGYHQISMAKEDEEKKTFITP-------F----------GLITAGNTFQRTVQGALSDQ----LENNVEAYVDDIVVKTKTSDSLIDDL
RETFDNLRRYHLMLNPEKCTFGRKRSKSRE-------DEGNRE----------H-----------------------------------------EEAKE
AFIALKRYLSNPPVLVAPQPNEELFLYIAAT-PYSVSTIIVVERERPVYYVSEALHDAKTRYLHIQKLLYAVRKLRHHKVIVVSSFPLGDVVDRIAKWVV
ELSQF--------DVCFVPRTVRQPNRQ-------------------------------------NVDNDVATNNTAEYEGLLTGIRAAVRRLIVKGDSE
LVANQVHKDYKSSPELSKYLAEKLERFDGIEVRHVY----RKDNIEPNDLARHASRRE
>tr|Q259B0|Q259B0_ORYSA H0901F07.10 protein OS=Oryza sativa GN=H0901F07.10 PE=4 SV=1
----VIEHKLMVRPDAKPVKQRLRRFAPDRKQAIREELDKLLKAGFIREVL-HSEWLANPVMVRKSNEKWRMCVDFTDLNKACPKDHFPPRIDQLVDSTA
GCELLSFLDAYSGYHQISMAKEDEEKTAFITP-------FGVFCYVKMPFGLITAGNTFQRTVQGALSNQ----LGNNVEAYVDDIVVKTKTGDSLIDDL
WETFDNLRRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIEANPEKIKMKSPTRLK-----------------------------------------EEAEE
AFIALKRYLSNPPVLVAPQPNEELFLYIAAT-PHSVSTVIVVERERLVYYVSEALHHAKTRYPQIQKLLYAVRKLRHHRVTVVSSFPLGRYSPTSL--PI
GLCQI--------T---------------TTKATMQHGQWRSMAH---------------------STAKEAT--NNTAEGLLAGIRAAAKRLIVKGDSE
LVVNQVHKDYKSNPELSKYLAEKLEKFDGIEVRHVY----RKDNVEPDDLARRASRRE
>tr|Q6AV09|Q6AV09_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=OJ1286_E05.1 PE=4 SV=1
-----PHESDSAYPDSDLHVSHI--FGGSTTYSSKREYKK------VEREV-CSTWQGAAKMKCSINLLFASTLDAMGI--------------------P
QSELTPTDQPFHGITPQSSSRPL-GKITLPVT-------FGQFRTEHITFDVTEFDTAYNAIIGRALAKL----MAASHYAYQVLKMPGPKGTITIQGNA
KLAVQCDKRSLDMVEQTPTPPTTFEPPKK-------------------------------------------------------------------EAEE
AFIALKRYLSNPPVFVAPQPNEELFLYIAAT-PYSVSTVIVVERERLVYYFSEALHDAKTRYPQIQKLLYAVRKLRHHRVTVVSSFPLGEVVGRIAKWVV
ELSQF--------DIHFVPRTVLADFMADKSDNQGDNETWTMAFDGALNSQGAGAGFILSPSGDQHAIHLNATNNTTEYEGLLAGIRAAAKRLIVKGDSK
LIANQVHKDYKSNPELSKYLSEKLERFNGIEVRHVY----SKDNVEPDDLARRASRRE
>tr|Q2R1P3|Q2R1P3_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g38540 PE=4 SV=1
----VIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVI-HPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPPRIDQIVDSTA
GCDLLCFLDAYSGYHQIRMAREDEEKTAFITP-------IGTYCYTTMPFGLKNAGPTFQRTTRISLGSQ----IGRNVEAYVDDLVVKTRNQETLLSDL
AETFESLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKIRMRPPSKLR-----------------------------------------DEAER
ALTQLKVYLSSPPVLVAPEPDEPLLLYLAAT-PQVVSAALVVERRRPVYFVSEALRDAKTRYPQAQKMLYAIRKLRHHRVTVVTSYPLGEGTGRVVKWAI
ELSEF--------DLHFEPRHALADFVAEPVSQLPHTAYWVMQFDGSLSLQGAGAGVTLSPSGDVYLVRLDATNNMAEYEGLLAGLRVAIRRLLVLGDSQ
LVVNQVCKEYRSDPQMDAYVRQRMEHFDGIELRHVP----RRDNTIADELSRLASSRA
>tr|Q84TT6|Q84TT6_ORYSJ Putative GAG-POL OS=Oryza sativa subsp. japonica GN=OSJNBb0097F01.11 PE=4 SV=1
----VIEHKLMVRPDAKPVKQRLRRFAPDRKQAIREELDKLLKAGFIREVL-HLEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHFPPRIDQLVDSTA
GCELLSFLDAYSGYHQISMAKEDEEKIAFITP-------F--FCYVKMPFGLITAGNTFQRTVQGALSNQ----LGNNVEAYVDDIVVKIKTGDSLIDDL
RETFDNLRRYRLMLNPEKCTFGVPSGKLLGFLVSGRGIEANPEKIKMKSPTRLK-----------------------------------------EEAEK
AFIALKRYLSNSPVLVAPQTNEELFLYIVAT-PHSVSTVIVVERERPVYYVSEALHDAKTRYPQIQKLLYAVRKLRHHRVTVVSSFPLGDVVGRIAKWVV
ELSQF--------DVHFVPRTVLIDFVADKSDNQGDNATWTMAFDGALNSQGAGAGFILSPSGDQHAIHLNATNNTAEYEGLLAGIRATAKRLIVKGDSE
LVTNQVHKDYKSNSELSKYLAEKLENFDGIEVRHVY----RKDNVEPDDLARRASRRE
>tr|Q53MU3|Q53MU3_ORYSJ Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Oryza sativa subsp. japonica GN=LOC_Os11g18290 PE=4 SV=1
----VIEHKLMVRPDAKPVKQKLRRFAPDRKQAIREELNKLLKAGFIREVL-HPERLANPVMVRKANRKWRMCVDFTDLNKACPKDHFPPRIDQLVDSTA
GCELLSFLDAYSGYHQISMAKEDEEKTSFITS-------FGVFCYVKMPFGLITAGNTFQRTVQGALSNQ----LENNVEANIDDIVVKTKTSDSLIDD-
-------------LRETFDNLRRYRLMLLGFLVSSRGIEANPEKIKMKSPARLK-----------------------------------------E----
------------------------------------STVIVVERERPVYYVSKALHDAKTRYTQIQKLLYAVRKLRHHRVTVVSSFPLGDIVGRIAKWVV
KLSQF--------DVRFVPRTVLADFVADRSDNQIDNETWTMAFDGALNSQGVGAGFILSPLGDQHAIHLNATNNTAEYEGLLAGIRAAVRRLIVKGDSE
LVANQVHKDYKSSPELSNYLAEKLERFDGIEVRHVY----RKDNIEPNDLARCASRRE
>tr|Q7XWZ2|Q7XWZ2_ORYSJ OSJNBb0072N21.8 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0072N21.8 PE=4 SV=2
----VIEHKLMVRPDAKPVKQKLRRFAPDRKQAIQEELDKLLKAGFIREVL-HPEWLANPVMVWKANGKWIMCVDFIDLNKACPKDHF---PLPQIDQLV
DSTAGF------------MAKEDDEKTAFITP-------FGVFCYVKMPFGLITAGNTFQRTVQGALSDQ----LENNVEAYVDDIVVKTKTSDSLIDDL
RETFDNLRQYRLMLNPEKCTFGVPSGKLLGFLVSGRGIEANPGKIKMKSPTRLK-----------------------------------------EEAEE
AFIALKRYLSNPPVLVAPQPNAELFLYITAT-PYSVSTVIVVERERPVYYVSEALHDAKTRYPQIQKLLYAVRKLRHHRVTVVSSFPLGDVVGRIAKWVV
ELSQF--------DVRFVPRTL--------SDNQIHNETWTMAFDGALNSQGAGAGFILSPSRDQHAIHLNATNNTAEYEGLLAGIRATVRRLIVKGDSE
LVANQVHKDYKSSPELSKYLAEKLERFDGIEVRHVY----RKDNIEPDDLAQRASRRE
>tr|Q7Y0G0|Q7Y0G0_ORYSJ Putative GAG-POL OS=Oryza sativa subsp. japonica GN=OSJNBb0074M06.18 PE=4 SV=1
----VIEHKLMVQPDVKPVKQKLRRFAPERKQAIREELDKLLKAGFIRE-----------------------ACPKDHFPLPRID--------QLVDSTA
GCELLSFLDAYFGYHQISMLKEDEEKTAFIMP-------FGVFCYVKMPFGLITAGNTFQCTVQGALNDQ----LGNNVEAYVDDIVVKTKTGDSLIDDL
RETFDNLRRYRLMLNPEKCTFGVPSSKLLGFLVSGREIKANPEKIKMKSPTRLK-----------------------------------------KEDEE
AFIALKRYLSNPPVLVAPQPNEELFLYIAAT-PYSVSTVIVVERE-------------------IQKLLYAVRKLRHHRVTVVSSFPLGDVVGRIAKWVV
ELTKF--------DVHFVPRTVLTDFVADWLDSQTDNETWTMAFVGALNSQGAGAGFILSPLGDQHAIYLNATNKTAEYEGLLAGIRVAVKRLIVKGDSK
LVANQVHKDYKSSPELSKYLAEKLERFDGIEVRHVY----RKDNIEPDNLAWRASKRE
>tr|A5BP54|A5BP54_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041574 PE=4 SV=1
---SIVQHRLPLLPHARXVKQKLRRLXPRWSLQVKEEIQKQLDVGFLSVVE-YPEWLANVVPVPKKDGKVRVCVDFXDLNKASPKD---DFPLPHIDMLV
DSTT----------------------------------GHSMLSFMDEFFGLKNAXATYQRAATTLFHDMMHR----DVEVYVDDMIVKSR-DRPDHLAA
LERFFERIRQFRLRLNPKKCTFMTSGKLLGYMVSKRGIEVDPYKIRMPXPRTEREVRGFLGRLQYISRFIARLTDEPIFQLLRKS----QPTVWDDQCQR
AFERIREYLLSPPVLAPPTQA------LDDSGK-----------DRAIYYLSKRMLDYETRYVMIERYCLALVWATRRL-RHYMTEPT--LVGRLMRWLV
LLTEF--------DIHYVTQKHLADFXDEDVATVTSLSGWRMYFDGXANHXGYGISVLLSPHGDHRSVRLAAXNNIVEYEACILGLETXLXQMEVFGDSN
LVLRQIQGEWK-----------------------------------------------
>tr|Q10I89|Q10I89_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g36220 PE=4 SV=1
---RVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLITAGFIKEV-QYPRWLANIVPVEKKNGQ---------------DD----FPIPITEMTT
GYGALSFMDGSSGYNQIKMDPRDAIDTAFRTP-------KGNFYYT-------------------------------------------TK-ERKRHQED
LRVVFERLRKHQHKMNPLKCAFVQSGIFLGFVVRYRGIEIEPKKIKMPPPKNLKDLKTLQGKLAYIRRFISNISIQPFAKLMKKG----APFEWDAECQS
GFDSIKRYLLNLPILAAPVKGRPLILYIAT-QPVSVGALLAQHNDKACYYLSRTMVGAERNYSPIEKLCLALKKLRHHQIQLITVDPIRYVPLLLGKWAL
LMMEFD--ITYVPQKEFLAAHPVPDSITELPDTIETEPSWELCFDGASRNGTRAGAGVFTPQGGVHSFSLLCSNNEAEYEALIFGLLMEVRSIRVYGDSQ
LIVQQINDIYEVLKQELVPYYSLMEMFGHIEVMHVPRS----RNAPADALAKLAA---
>tr|A0A0E0EWP1|A0A0E0EWP1_9ORYZ Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
----------------------------------------------------HLDWLAIPVLVRKSNKQWRMCVDYTDLNRACAKD---PFGLPRIDQVV
GCELLSFLDAYLGYHQIALKEDDCIKTSFITL-------FGAYFYTTMPFGLKNAWVTYQRTMQRCLHNQLGR----NVEACVDDVVIKTK-TQTDLITD
LEETFNSLRTFKFKLNPEKCTFVPSGKLLGFMVSRHGIEAYPGKIALQPPASLKELQKLTGCMASLSCFTSRLGSMPFFKLLKKTT----DFTWSDEAQT
AFDDFKWIPHQSTHIGGATPGPPLHRSHHACGQYGTGR------G-----ARRILTDSKARYTQIQKMLYAIFTARKHPISVVTAFPLEDVTGRIAKWAL
ELMAF--------DISFQPRTALADFIAEWIEEQQL---------GA-----RTGAVLISPRGEQYVLQLHASNNMAEYEALLHSLHLGIHRVLAKGDSQ
LVVSQVMKDWNCSDDNMASYCQEVCKLEDKFDGLELSHTGREDNTKADMLARLGSRRE
>tr|Q01KY5|Q01KY5_ORYSA OSIGBa0111E13.4 protein OS=Oryza sativa GN=OSIGBa0111E13.4 PE=4 SV=1
-----------------------------------------------------------------------------------------SLPLPRIDQLA
GCELLSFLDAYSGCHQISMAKEDEEKTAFIMP-------FEVFCYVKMPFGLITARNTFQRTVQGALSDQLGN----NVEAYVDDIAVKTK-TSNSLIDD
LRETSDNLRRYRLILNPEKYTFVPSGKLLGFLISGRGIEANPEKIKMKSPTRLKEVQKLTRCMAALSRFVARMGGQPFFALLKKQ----DKIVWTQEAEE
AFVALKRYLTNPPVLVAPQPNEELFLYIAAT-PYSISTVIVVERERPVYYVSEALHDAKTRYPQIQKLLYAVIKLRHHRVTIVSSFPLGDVVGRIAKWVV
ELSQF--------DVHFVPRTAIKSQLRS---R------GKIHLD------------ILSEDQFKHAIHLNATNNIAEYEGLLAGIRAGVKRLIVKGDSE
LVTNQVHKDYKSNPELSKYLAELEKRFDRIEVRHVYR----KDNIEPDDLARRASRRE
>tr|Q2QLU5|Q2QLU5_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g43270 PE=4 SV=1
----VIEHSLHVKEDTKPIKQRLRRFAQNRKDAIKEELTKLLAAGFIKEV-LRPDWLANPVLVRKKMEQWRMCVDYTDLNKSCPKD---PFGLPRIDQIG
----------------------------------------------------------------------------RNVEAYVDDVVVKTK-QKDDLIAD
LEETFISIRAFKMKLNPEKCIFVPSGKLLEFMVSQRGIQANPEKINMKPPSSQKDVQKLTSCMAALSRFVSRLGEMPFFKLLKKT----DNFQWGPEAQK
AFEDFKKLLTTPPVLASPHPQEPLLLYVSATSQ----VVLA---------------DSKTRYPQVQKLLYGVITVRKHPVTVVTSFPLGDINGRIAKWAL
ELMSL--------DISFKPRTALADFWTECQEDMPEEEYWTMHFDGSKRLTGTGAGVLISPTGERYVLWIHASHNVAEYEALLHGLRIAIHRLIIRGDSQ
LVVNQVMKEWSCLDDNMTAYRQKLEKFDGLELTHVLRH----NNEAADRLANFGSKRE
>tr|Q7F9N8|Q7F9N8_ORYSJ OSJNBa0041M06.5 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0041M06.5 PE=4 SV=1
----LVEHRLPIKPGFRPYKQPPHLFNPLLYDRVKEEIDRLLKAGFIRTCL----YVE-------------------DLNKATPKD---EYPFDEVEKFT
SADPLKEVDIGDGTKPTFMRADYKVKIIELLKE-----YVDCFAWEYHEM----------------P-DLS--------------------RELVEHRLP
IKPGFRPYKQPPHLFNPLLYDRVEIDRLAGFIRTC---LYVDRH-DDQWTSCQKVISFLDG-----IRYNQ------FFMA-E----EEAGFTWGAKQQE
AFEELKRYLSTPPVVRAPKAGKPFQLYIA-SEDKVIGVVLTQEEDYIITYLSRRLLDAETSTCIVACQANVIKHMLQR-PIL---------SGRIGKWAY
ALIEYDLAYEPLKSMDFIV-DHHIDIAYEGEVCIVEVIPWKIYFDGSSCKEGQAIGVLFSPNGMKASVRLECTNNQAEYNALLFGLQVMEKYVEAFGDSE
LVVQQVAGVYKCLDRSLNRCLDIIANFDNFAIRHIARHDNSRANDLAQQA--------
>tr|Q7XL33|Q7XL33_ORYSJ OSJNBa0056L23.24 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0056L23.24 PE=4 SV=2
----LVEPRLPIKPGFRPYKQPPRRFNPLLYDRVKEEIDRLLKAGFIRPCR----YAEWVSSIVPVEKKIRVCIDFRDLNKATPKD---EYPMPIADMAS
GHKVISFLDGNAGYNQIFVAEEDMYKTAFRCPG-----FVGLFEWVVMTFRLKNAGAIMNLIFHDLL-GII--------------------LEIEGHIAD
LRLAFERMRRYGLKMNPLKCAFGSAGRFLGFMVHK---KIEKIH-DFKAPTCKKEVQKLAGK---IDAFFS------ILRL-K----KEADFTWGAKQQE
AFEELKKYLSTPPVVRAPKAGKPFRLYIA-SEDKVIGPVLTQEEDYIITYLSRRLLDAETRYIAIGCEACGNVQLAPA-AVL---------NHIIKPWPF
RGWALDFIGQIYPSSDYFTKEEHLKKAYNAKLFQVGDLVWKTILPLGTRSKEFGIILIYISDGMHVDLRLARMRRGLKMNPCAFGVSAGKMVHERGAEID
KMIEKI-RDFKAPTCKIDARLKKEQEAFEELKRHIARRDNSRANDLAQQA--------
>tr|Q2QTB3|Q2QTB3_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g20240 PE=4 SV=2
----LVEHRLPIKPGFRPYKQPPRRFNPLLYDRVKEEIDRLLKAGFIRPCR----YVEWVSSRVLVEKKIGVCIYFRDLNKATPKD---EYPMPIADMAS
GHKVISFLDGNAGYNQIFMAEEDMYKMAFRCPG-----FVGLFEWVVMTFGLKNAGATMNLIFHDLL-GII--------------------LEIEGHMAD
LRLAFERMRRYGLKMNPLKCAFGSAGKFLGFMVYK---KIEKIR-DFKAPTCKKEAQKL---------------------------------YLGAKQQE
AFEELKRYLSTPPVVRAPKAGKPFRLYIA-SEDKVIGAVLTQEEDYIITYLSRRLLDAKT-----------------R-PIL---------SGRIGKWAY
VLIEYDLAYEPLKSMGFIV-DHHT-IAYEGEVCLVEVIPWKIYFDGSSCKEGQGIGVFFSPNGMEASVRLECTNKQVEYNALLFGLQVMVKYMEAFGDSE
LVVQQVTGVYKCLDGSLNRCLDIIANFDNFSIRYIVRHDNSRANDLAQQA--------
>tr|Q2QRZ9|Q2QRZ9_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g25830 PE=4 SV=2
----LVEHRLPIKPGFSPYKQPPRRFNPLLYDRVKEEIDQLLKAGFTRRCH----YAEWVSSIVPVEKKIRVCMDFRDLNKATPKD---EYPMPIADMAS
GHKVISFLDGNAGNNQIFMTEQDIYKTTFRCPG-----FVGLFEWVVMTFGLKNAGATMNLIFHDLL-GII--------------------LEIEEHIAD
LRLAFERMRRYGLKMNPLKCAFGTAGKFLGFMVHK---KIEKIR-DFKAPTCKKEVQKL--K---IDAFVP------ILRL-K----KEADFTWGAKQQE
AFEELKRYLSTPPVVRAPKAGKPFRLYIA-SEDKVIGAVLTQEEDYIITYFSRRLLDAETSTCIVACQANVIKHMLQR-PIL---------SGRIGKWAY
ALIEYDLAYEPLKSVDFIV-EHHV-IAYEEEVCLVEVIPWKIYFDGSSCKEGQGIGVLFSPNGMEASVRLECTNNQAKYNALLFGLQIMEKHVEAFGDSE
LVVQRVAGFYKCLDGSLNRCLDIIANFDNFTIRHIARHDNSRANDLAQQA--------
>tr|L0P3P1|L0P3P1_9POAL PH01B001I13.4 protein OS=Phyllostachys edulis GN=PH01B001I13.4 PE=4 SV=1
----LVEHRLPVKAGFRPHKQPPRRFNSSIYDRIKEEIDRLLKAGFIRPCR----YVEWISNIVPVEKKLRVCIDFRDLNRATPKD---EYPMPIADMAS
GHRVISFLDGNAGYNQIFMAEEDISKTAFRCPG-----FIGLFEWVVMTFGLKNAGATMNLIFHDLL-DVI--------------------KEVDHHLAD
LHLAFERMRRYGLKMNPLKCAFGSAGKFLGFIIHS---KIESIK-KVKATQCKRDVQKFSGK---GSAFTP------ILRL-K----KETEFTWGAEQQQ
AFEEIKRYLSTPPVLRAPQAGTSFRLYIA-AEEGVIGAVLTQILDYVITYLSRRLLGAETRYVFVACQT-VIKYMLQQ-PIL---------SGRIGKWAY
ALIEYDLVYESLKSVDFIV-DHRID---EELIDYLCVRPWSLYFDGSACREGQGVGILISPRGLETSVRLECTNNQAEYEALLLGLQILEKNIEAFGDSL
LVVQQVSRNYQCFDGSLNMCLEIIATLDDFTISHVARKENIRANDLAQQA--------
>tr|Q53JU8|Q53JU8_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g22940 PE=4 SV=1
---------------------------------AKAEVKRFYDAGFIRPCR-YAEWVFNIVPVIKKNSKVRVCIDFRDLNKATQKD---EHPMPVANQAS
GHKILSFMDGNAGYNQIFMAEEDIHKIAFRCPG-----AIGLFEWVMMTFGLKSVGATYQRAMNYIYHDLIG----WLVEVYIDDVVVKSK-EIEDRIAD
LRKVFERTRKYSLKMKPTKCAFGSAGQFLGFLVYERGIEITQRNVKIQPPEDKTELQEMIGKINFVRRLY--LS--------------------------
------------------------------AGEKSIGSVLIQELEKVVFYLSRRLLDVETKYSPVEKLCLCLYFSCTKRHYLLSNDVVKYMKGRVGKWIF
ALTKF--------DLRHESSKAIADFIVDDSIGSVEIVPWTLFFDGSVCTHGCGIGLVISPRGAEFAYTVKATNNQAEYEAVLKGLQLLKDAVEIMGDSL
LVISQLAGEYEKNDTLMVEKCRELMGELLVTLKHVS----REQNVEANDLAQEA----
>tr|A0A080ZNT7|A0A080ZNT7_PHYPR Uncharacterized protein OS=Phytophthora parasitica P1976 GN=F444_14850 PE=4 SV=1
-------CDIDTG-DAKPVAQRVRRVALQFGGKLSDLIKGLLSAKIIRVS--SSPWASPIVLIIKKNGDIRLCIDYRVVNSLTRLM---LYSMPLVNDLL
E-------------------DLDKREPAFITP-------FGLFEWLRMPFGLKNAPQIYQRLLDNALYGYLRIPETVDRRSYIDDILVTAE-SWKSLCDK
VDRLVNACDRWNLSISVVKSSWCRKVDHLGHRVSADGLKAHPKNLELPFPRTLRAMQSFLGSLNYYSRFIEGLAISILYELRENPGQMDERDKWD-RAQA
AFEMLKNKIATAPVLQHFDPKRPVVVYAE---A--QRAQ---------LWHGRESDPSSSPDPG--RV---LLHPG--HETD---------QGRLGNWAA
LLSPW-T-------LETVKCTRGEDEI---LAVIPTEELLVVGFDGSARRGGACSAIVWLPEWIVESKYLPLMVNEAEYQPVVRLLQLGPGRGLQLGDTA
DTRRRVQGT-------------------------------------------------
>tr|W2VQD0|W2VQD0_PHYPR Uncharacterized protein OS=Phytophthora parasitica CJ01A1 GN=F441_22970 PE=4 SV=1
-----------------------------------------------------------------------------------------VYPMPLVNDLD
KVLWYCSLDMASGFWVVEMAERARIVSAFITP-------FGLFEWLRMPFGLKNAPQIYQRLLDNALHGYLRIPKGSDVFQAPDLDYAGSPITWESLCDK
VDRLLNACDRWNLSISVVKSSWCRKVDYLGHRVSADGLEVHPKNLELPFPGTLRAMQSFLGSLNYYSRFIEDLAI---CLDLTDE-----RDKWD-RVQA
AFEMLKNKIVTAPVLRHFDPDRIPVVVVYAS-DCAISAVVAQEHDMPVPFTSRTLKPNELNYGL------------------QGR---------LGNWAA
LLSHFSEIASITPRESDDL--ILSSQPHQQPTIEQGEELLVVSFDGSARVGGACSAIVWIPEWIVESKNLPLTVNEVEYQGLLLGFDLLSGRLIIFGDSN
WVIRQMRGEIECKVPDLTPLRRALDR-LRTWPAHEFLHVKRDGNQSADRLANTALHQ-
>tr|Q7XKP2|Q7XKP2_ORYSJ OSJNBa0032N05.7 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0032N05.7 PE=4 SV=3
-----IMHYLAVKPDAKPRKQKLRKMSVDRQEAAKAEVQKLLKTGVIQEID-HPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDQLVDST
AGCELMS------FLDAYSGYHQIHMNPAHIPKTAFITPFGTFCHLRMPFGLRNAGATFARLVYKVLYKQLGR----NVEAYVDDIVVKSR-KAFDHVSD
LQETFDNLRVAGMKLNPEKCVFGRAGKLLGFLVSERGIEANPEKI--------DAIQKLAGQIAALSRFLSKAA----------------ERGLPFTLRG
AYIEME----------------------------------------KFTYALVMASRKLK---------HYFQAHVLRGKEITG---------WLSKWVA
ELSPF--------DLHFVARTVLADFVAKWT--------PVMYSDSSWSHKGAGAVALTSPGGMRYAARLQTTNNTAEYKAVLLGLRKAKRRLLIRTDSK
RVASLLDKSFEAKEEGMKRYLEAIRSMEKCFAGITVEHLPRGQNEEADALAKSAA---
>tr|Q6AVL1|Q6AVL1_ORYSJ Putative retrotransposon protein OS=Oryza sativa subsp. japonica GN=OJ1519_A12.10 PE=4 SV=1
-----IMHHLAVKPDAKPRKQKLCKMSADRQEAAKAEVQKLLKAGVIQEID-HPEWLANSVLVRKSNGKWRMCVDFTDLNKACPKDDFPLPRIDRLVDST
AGCELMS------FLDAYSGYHQIRMNPADIPKTAFITPFGTFCHLRMPFGLRNAGATFARLVYKVLYKQLGQ----NVEAYVDDIVVKSR-KAFDHASD
LQETFDNLHAAGMKLNPEKCVFGRAGKLLGFLVSERGIEANPEKI--------DAIQKLAGRIAALSRFLSKAA----------------ERGLLFTLRG
AYIEME----------------------------------------KLAYALMMASRKLK---------HYFQ----AHKVIVP---------SQYPL--
---------------------VLADFVAKWT--------PVMYSDGSWSHKGAGVAAVTSPNGVRYAARLQTTNNAAEYEAILLGLRKAKRRLLIRTDSK
LVAGYVDKSFEAKEEGMKRYLDAVRSMEKCFTGITVEHLPRGQNEKADTLAKSAA---
>tr|Q2R6M6|Q2R6M6_ORYSJ Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g19520 PE=4 SV=1
-----IMHDLAVKPDIKPRKQKLRKMSADRQEAAKAEVQKLLRAGVIQEID-HPEWLANPVLVRKSNGKWRMCVDFTDLNKACPKDDFSLPRIDQLVDST
AGCELMS------FQDAYSGYHQIHMNPLDIPKTSFITPFGTFCHLRMPFGLRNAGATFARLVYKVLGKQLGR----NVEAYVDDIVVKSR-KAFDHAID
LQETFDSLRAAGIKLNPEKCVFGCIGKLLGFLVSERGIEVNPEKI--------NAIQKLAGRIAALSRFLSKAA----------------ERALPFTLRG
TYTEME----------------------------------------KLAYALVMASRKLK---------HYFQ----AHKEVTG---------RLSKWAA
ELSLF--------DLHFVARSVLADFVAEWT--------PVMYSDGSWSHRGAGVAALFSPNGVRYAARLQTTNNAAEYEAVLLGLRKAKRRLLIRTDSK
LVAGHVDKSFEAKEEGMKRYLEAIRSMEKCFTGITVEHLPSGQNEEADALVKSAA---
>tr|A0A0Q3ZX58|A0A0Q3ZX58_ALLMI Uncharacterized protein OS=Alligator mississippiensis GN=Y1Q_025577 PE=4 SV=1
-------------------------------------------------------------------NEARLVIDYREVNKRCQQLAPTQQTLPQCLEMA
QPWVGVTLDLKNMFFSIPLTDPNGALNMCI--------EGIMYKWTVCPQGYQNSPSLATSAMNRTLETFATANDEYRIWNYVNDIAIMGE-TNSVVSEA
ATRLVNHLQKNGWTINLEKSHLTANITFLGTTFDSTTRTHDLEPFTHPLPTDRRSRQQLLGHLNWYRHYIPPLHLAKLQRQIREKTRK--STPWTARDDG
HLRRLLTAIKNTS-LAAINLSEPLVVTLGYTATHVWATA--HNDRDKVVFTHKTLQAAQNHYGQLAKTLLAGQLAES--LS-SGHAPLALIPLEPKTWNT
LVINHWYDATLIPDPPNNHPPIL----Y--GTTDP---AW-IGSGGTSRKG--GGYGYYKPCHHEISNPIPNSPQLCELLGFKAAVQHCLDPVVIAIDSI
YVYKIVTDTATENRSVWKDIREAISFMTPPLVKHTRSHRPDTD---------------
>tr|A0A0Q4AES3|A0A0Q4AES3_ALLMI Uncharacterized protein OS=Alligator mississippiensis GN=Y1Q_002132 PE=4 SV=1
----------------------------------------------------------------------------------------------------
--WVGTTLDLKDMFFSIPINDV---KGALNMC-V----NGTMYKWTVCPQGYRNAPALATVAMNDTLKEFRASHDELKIWSYVDDLAIMGR-TREVIVEV
TNILVTHLNHKGWTVSLKKSKLQADITFLGTKFFDKGVTPDTGPLEGQLPMDKKRLQQLLGYLNWYRHHITPTHLPVLAKLQRQIRNKSQKFPWTEKDGK
DLHKLLAAIKMTP-LHAFDLTDPMTVTLGYTTHHVW-AI-AHNSRGELMYTSRTLQAAQHRYGGIGKILMAGQLIEL---LSHGHAPGTLLPVLPSTWNT
LVLNHWH------CWKCEDLPPSPDTTEN---ASPVLTAAWMASDGTTRDD--GVYGFYKPCHDMLYPRC-SSAQKNELLGFKHCLQDHDGTPVIAIDSR
YIYKIITGAPTQNLDIWQDIYDMLSTFVLPLIKHTKSHKPDPMHEVIDKLLED-----