| Hsp104 |
| ID: | 1509132411 |
Query Sequence |
Download Alignment We filter this alignment to remove positions that have > 75% gaps before running GREMLIN. |
| Length: | 908 (853) | ||
| Sequences: | 5806 (2697.1) | ||
| Seq/Len: | 6.807 | ||
| Nf(neff/√len): | 92.3 |
HHblits Results: (2016_02)
Sequences per length for each position, BEFORE the coverage/gap filter was applied
Legend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 6.807).
Sequences per length for each position, AFTER the coverage/gap filter was applied
Residue pairs sorted by coevolution strength:
Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] covarying residues with sequence seperation > 3. The i and j are positions as given in the input sequence.
| i | j | Scaled score | Prob |
| 176_E | 180_Q | 5.969 | 1.00 |
| 173_D | 242_K | 5.863 | 1.00 |
| 785_D | 811_K | 5.670 | 1.00 |
| 171_A | 244_F | 4.685 | 1.00 |
| 348_T | 376_A | 4.656 | 1.00 |
| 781_H | 812_D | 4.533 | 1.00 |
| 777_R | 816_K | 4.014 | 1.00 |
| 843_R | 848_E | 3.971 | 1.00 |
| 707_R | 715_T | 3.837 | 1.00 |
| 575_D | 578_S | 3.489 | 1.00 |
| 345_V | 376_A | 3.487 | 1.00 |
| 571_H | 574_R | 3.449 | 1.00 |
| 577_S | 584_M | 3.321 | 1.00 |
| 273_E | 309_Q | 3.310 | 1.00 |
| 725_M | 766_I | 3.272 | 1.00 |
| 807_T | 858_V | 3.186 | 1.00 |
| 249_A | 300_I | 3.117 | 1.00 |
| 609_S | 703_L | 3.113 | 1.00 |
| 199_V | 338_I | 2.952 | 1.00 |
| 572_M | 630_F | 2.902 | 1.00 |
| 172_I | 177_Q | 2.889 | 1.00 |
| 542_D | 545_T | 2.845 | 1.00 |
| 421_L | 452_E | 2.823 | 1.00 |
| 788_L | 806_L | 2.795 | 1.00 |
| 165_E | 168_S | 2.786 | 1.00 |
| 344_S | 347_Q | 2.779 | 1.00 |
| 512_D | 516_Q | 2.761 | 1.00 |
| 789_K | 792_E | 2.695 | 1.00 |
| 573_E | 588_K | 2.657 | 1.00 |
| 592_N | 838_N | 2.614 | 1.00 |
| 776_S | 779_A | 2.597 | 1.00 |
| 414_L | 459_L | 2.566 | 1.00 |
| 196_T | 338_I | 2.496 | 1.00 |
| 494_E | 506_R | 2.492 | 1.00 |
| 486_L | 505_L | 2.481 | 1.00 |
| 349_V | 372_L | 2.426 | 1.00 |
| 483_L | 510_I | 2.377 | 1.00 |
| 592_N | 842_L | 2.369 | 1.00 |
| 639_I | 681_S | 2.368 | 1.00 |
| 367_I | 400_C | 2.353 | 1.00 |
| 777_R | 812_D | 2.346 | 1.00 |
| 209_C | 286_I | 2.345 | 1.00 |
| 579_E | 629_G | 2.342 | 1.00 |
| 624_A | 724_I | 2.318 | 1.00 |
| 500_A | 504_D | 2.305 | 1.00 |
| 428_I | 449_R | 2.298 | 1.00 |
| 573_E | 595_R | 2.295 | 1.00 |
| 729_L | 757_H | 2.270 | 1.00 |
| 164_L | 168_S | 2.263 | 1.00 |
| 611_L | 766_I | 2.225 | 1.00 |
| 270_K | 274_E | 2.225 | 1.00 |
| 236_T | 239_Q | 2.219 | 1.00 |
| 345_V | 380_K | 2.200 | 1.00 |
| 176_E | 179_R | 2.185 | 1.00 |
| 395_L | 550_A | 2.185 | 1.00 |
| 814_L | 831_L | 2.185 | 1.00 |
| 429_K | 432_E | 2.184 | 1.00 |
| 425_Q | 456_Q | 2.172 | 1.00 |
| 95_V | 119_A | 2.171 | 1.00 |
| 501_T | 504_D | 2.168 | 1.00 |
| 817_Y | 835_E | 2.168 | 1.00 |
| 754_V | 763_L | 2.153 | 1.00 |
| 563_E | 571_H | 2.136 | 1.00 |
| 791_I | 832_I | 2.132 | 1.00 |
| 256_K | 260_D | 2.127 | 1.00 |
| 251_L | 268_V | 2.126 | 1.00 |
| 173_D | 176_E | 2.121 | 1.00 |
| 492_D | 496_R | 2.115 | 1.00 |
| 475_E | 516_Q | 2.105 | 1.00 |
| 702_M | 723_V | 2.104 | 1.00 |
| 286_I | 325_V | 2.072 | 1.00 |
| 177_Q | 182_K | 2.068 | 1.00 |
| 587_I | 623_L | 2.013 | 1.00 |
| 450_Q | 454_S | 2.003 | 1.00 |
| 649_K | 694_D | 1.998 | 1.00 |
| 575_D | 630_F | 1.996 | 1.00 |
| 166_Y | 267_G | 1.984 | 1.00 |
| 729_L | 754_V | 1.974 | 1.00 |
| 323_S | 667_E | 1.970 | 1.00 |
| 581_V | 786_I | 1.970 | 1.00 |
| 612_F | 724_I | 1.941 | 1.00 |
| 831_L | 835_E | 1.926 | 1.00 |
| 373_V | 377_Q | 1.920 | 1.00 |
| 374_T | 543_S | 1.918 | 1.00 |
| 702_M | 708_I | 1.915 | 1.00 |
| 55_I | 60_Y | 1.910 | 1.00 |
| 579_E | 622_E | 1.899 | 1.00 |
| 650_Y | 659_T | 1.895 | 1.00 |
| 509_A | 512_D | 1.889 | 1.00 |
| 637_M | 678_K | 1.884 | 1.00 |
| 481_K | 485_E | 1.883 | 1.00 |
| 650_Y | 653_S | 1.861 | 1.00 |
| 270_K | 273_E | 1.850 | 1.00 |
| 579_E | 626_K | 1.843 | 1.00 |
| 813_F | 817_Y | 1.841 | 1.00 |
| 613_L | 727_S | 1.831 | 1.00 |
| 486_L | 510_I | 1.826 | 1.00 |
| 787_R | 790_E | 1.824 | 1.00 |
| 809_E | 858_V | 1.816 | 1.00 |
| 183_L | 227_Q | 1.803 | 1.00 |
| 290_M | 331_F | 1.803 | 1.00 |
| 585_D | 773_N | 1.802 | 1.00 |
| 647_S | 651_A | 1.786 | 1.00 |
| 375_A | 396_V | 1.775 | 1.00 |
| 184_D | 203_R | 1.769 | 1.00 |
| 780_I | 815_A | 1.769 | 1.00 |
| 345_V | 377_Q | 1.768 | 1.00 |
| 350_A | 353_R | 1.765 | 1.00 |
| 782_K | 785_D | 1.756 | 1.00 |
| 403_V | 541_V | 1.754 | 1.00 |
| 27_H | 73_L | 1.750 | 1.00 |
| 379_A | 388_L | 1.729 | 1.00 |
| 482_K | 509_A | 1.726 | 1.00 |
| 489_K | 501_T | 1.720 | 1.00 |
| 570_I | 845_L | 1.717 | 1.00 |
| 482_K | 485_E | 1.709 | 1.00 |
| 228_R | 233_D | 1.706 | 1.00 |
| 166_Y | 271_E | 1.703 | 1.00 |
| 418_E | 463_R | 1.702 | 1.00 |
| 734_I | 746_T | 1.696 | 1.00 |
| 341_A | 678_K | 1.688 | 1.00 |
| 339_E | 678_K | 1.687 | 1.00 |
| 571_H | 575_D | 1.682 | 1.00 |
| 353_R | 369_D | 1.680 | 1.00 |
| 579_E | 635_E | 1.674 | 1.00 |
| 227_Q | 231_D | 1.669 | 1.00 |
| 806_L | 810_A | 1.664 | 1.00 |
| 773_N | 779_A | 1.660 | 1.00 |
| 248_L | 251_L | 1.659 | 1.00 |
| 283_I | 312_V | 1.659 | 1.00 |
| 485_E | 489_K | 1.656 | 1.00 |
| 751_M | 754_V | 1.653 | 1.00 |
| 463_R | 467_N | 1.648 | 1.00 |
| 585_D | 747_K | 1.642 | 1.00 |
| 781_H | 808_Q | 1.633 | 1.00 |
| 807_T | 856_N | 1.631 | 1.00 |
| 11_A | 116_I | 1.630 | 1.00 |
| 486_L | 513_I | 1.627 | 1.00 |
| 37_A | 66_K | 1.626 | 1.00 |
| 504_D | 509_A | 1.624 | 1.00 |
| 675_L | 721_C | 1.622 | 1.00 |
| 399_S | 549_T | 1.613 | 1.00 |
| 349_V | 373_V | 1.612 | 1.00 |
| 35_I | 92_L | 1.604 | 1.00 |
| 577_S | 587_I | 1.603 | 1.00 |
| 813_F | 835_E | 1.598 | 1.00 |
| 478_Q | 482_K | 1.588 | 1.00 |
| 802_Y | 849_I | 1.585 | 1.00 |
| 229_I | 243_L | 1.580 | 1.00 |
| 457_E | 461_P | 1.579 | 1.00 |
| 850_K | 853_E | 1.579 | 1.00 |
| 498_D | 501_T | 1.573 | 1.00 |
| 565_E | 598_R | 1.566 | 1.00 |
| 232_D | 239_Q | 1.564 | 1.00 |
| 165_E | 271_E | 1.563 | 1.00 |
| 595_R | 842_L | 1.559 | 0.99 |
| 787_R | 829_N | 1.558 | 0.99 |
| 424_I | 448_A | 1.557 | 0.99 |
| 213_E | 318_N | 1.556 | 0.99 |
| 453_A | 457_E | 1.545 | 0.99 |
| 410_K | 418_E | 1.540 | 0.99 |
| 788_L | 832_I | 1.540 | 0.99 |
| 95_V | 120_L | 1.528 | 0.99 |
| 195_S | 398_I | 1.519 | 0.99 |
| 646_L | 670_F | 1.519 | 0.99 |
| 370_S | 543_S | 1.508 | 0.99 |
| 753_A | 756_Q | 1.507 | 0.99 |
| 357_P | 361_I | 1.502 | 0.99 |
| 487_E | 514_K | 1.498 | 0.99 |
| 784_V | 811_K | 1.496 | 0.99 |
| 576_L | 580_V | 1.496 | 0.99 |
| 733_F | 753_A | 1.495 | 0.99 |
| 675_L | 718_C | 1.494 | 0.99 |
| 751_M | 771_I | 1.494 | 0.99 |
| 467_N | 471_H | 1.492 | 0.99 |
| 355_L | 358_K | 1.488 | 0.99 |
| 420_Q | 451_K | 1.484 | 0.99 |
| 572_M | 591_S | 1.482 | 0.99 |
| 843_R | 846_K | 1.479 | 0.99 |
| 211_I | 337_K | 1.471 | 0.99 |
| 372_L | 396_V | 1.470 | 0.99 |
| 490_A | 510_I | 1.457 | 0.99 |
| 402_G | 548_E | 1.453 | 0.99 |
| 597_S | 602_A | 1.450 | 0.99 |
| 781_H | 811_K | 1.448 | 0.99 |
| 345_V | 349_V | 1.447 | 0.99 |
| 168_S | 176_E | 1.444 | 0.99 |
| 639_I | 675_L | 1.442 | 0.99 |
| 175_T | 230_I | 1.430 | 0.99 |
| 792_E | 804_L | 1.426 | 0.99 |
| 457_E | 460_E | 1.426 | 0.99 |
| 743_Q | 746_T | 1.424 | 0.99 |
| 503_A | 506_R | 1.423 | 0.99 |
| 818_G | 828_L | 1.423 | 0.99 |
| 428_I | 445_L | 1.418 | 0.99 |
| 479_A | 513_I | 1.415 | 0.99 |
| 784_V | 815_A | 1.414 | 0.99 |
| 269_L | 304_A | 1.406 | 0.99 |
| 807_T | 810_A | 1.406 | 0.99 |
| 732_E | 736_S | 1.399 | 0.99 |
| 137_I | 141_K | 1.395 | 0.99 |
| 699_M | 702_M | 1.395 | 0.99 |
| 356_Q | 369_D | 1.394 | 0.99 |
| 652_V | 698_V | 1.394 | 0.99 |
| 604_P | 794_R | 1.388 | 0.99 |
| 835_E | 839_K | 1.377 | 0.98 |
| 785_D | 808_Q | 1.376 | 0.98 |
| 486_L | 509_A | 1.375 | 0.98 |
| 21_L | 38_A | 1.370 | 0.98 |
| 611_L | 754_V | 1.368 | 0.98 |
| 806_L | 811_K | 1.368 | 0.98 |
| 272_I | 281_L | 1.367 | 0.98 |
| 21_L | 24_D | 1.366 | 0.98 |
| 704_D | 829_N | 1.355 | 0.98 |
| 817_Y | 831_L | 1.344 | 0.98 |
| 482_K | 516_Q | 1.344 | 0.98 |
| 813_F | 859_L | 1.343 | 0.98 |
| 27_H | 34_H | 1.343 | 0.98 |
| 589_A | 770_V | 1.341 | 0.98 |
| 490_A | 506_R | 1.339 | 0.98 |
| 611_L | 688_V | 1.339 | 0.98 |
| 348_T | 388_L | 1.328 | 0.98 |
| 418_E | 459_L | 1.327 | 0.98 |
| 685_F | 702_M | 1.324 | 0.98 |
| 25_H | 74_V | 1.321 | 0.98 |
| 255_A | 268_V | 1.321 | 0.98 |
| 100_A | 111_I | 1.319 | 0.98 |
| 843_R | 849_I | 1.319 | 0.98 |
| 801_H | 851_D | 1.315 | 0.98 |
| 122_N | 137_I | 1.315 | 0.98 |
| 240_G | 278_L | 1.313 | 0.98 |
| 573_E | 591_S | 1.311 | 0.98 |
| 31_Q | 89_S | 1.310 | 0.98 |
| 32_P | 95_V | 1.308 | 0.98 |
| 366_R | 540_V | 1.304 | 0.98 |
| 483_L | 513_I | 1.300 | 0.98 |
| 839_K | 843_R | 1.299 | 0.98 |
| 818_G | 831_L | 1.297 | 0.97 |
| 653_S | 656_L | 1.296 | 0.97 |
| 606_Q | 829_N | 1.287 | 0.97 |
| 489_K | 492_D | 1.283 | 0.97 |
| 784_V | 832_I | 1.276 | 0.97 |
| 478_Q | 481_K | 1.272 | 0.97 |
| 641_V | 655_L | 1.270 | 0.97 |
| 14_I | 39_F | 1.267 | 0.97 |
| 347_Q | 350_A | 1.261 | 0.97 |
| 576_L | 626_K | 1.260 | 0.97 |
| 265_F | 268_V | 1.259 | 0.97 |
| 810_A | 859_L | 1.259 | 0.97 |
| 413_E | 458_E | 1.258 | 0.97 |
| 812_D | 816_K | 1.256 | 0.97 |
| 14_I | 42_T | 1.255 | 0.97 |
| 486_L | 490_A | 1.255 | 0.97 |
| 88_P | 92_L | 1.255 | 0.97 |
| 22_A | 34_H | 1.255 | 0.97 |
| 809_E | 812_D | 1.254 | 0.97 |
| 762_F | 766_I | 1.254 | 0.97 |
| 117_L | 140_I | 1.253 | 0.97 |
| 178_A | 183_L | 1.246 | 0.97 |
| 399_S | 546_I | 1.245 | 0.97 |
| 179_R | 242_K | 1.244 | 0.97 |
| 802_Y | 844_I | 1.239 | 0.96 |
| 342_E | 380_K | 1.236 | 0.96 |
| 286_I | 314_G | 1.235 | 0.96 |
| 840_L | 855_V | 1.233 | 0.96 |
| 794_R | 837_L | 1.233 | 0.96 |
| 368_L | 540_V | 1.231 | 0.96 |
| 647_S | 694_D | 1.230 | 0.96 |
| 631_L | 722_I | 1.230 | 0.96 |
| 379_A | 391_S | 1.230 | 0.96 |
| 28_P | 79_Q | 1.226 | 0.96 |
| 51_L | 117_L | 1.221 | 0.96 |
| 404_A | 408_D | 1.218 | 0.96 |
| 638_M | 682_V | 1.218 | 0.96 |
| 732_E | 753_A | 1.217 | 0.96 |
| 656_L | 698_V | 1.213 | 0.96 |
| 186_V | 193_I | 1.213 | 0.96 |
| 500_A | 503_A | 1.213 | 0.96 |
| 58_G | 135_V | 1.212 | 0.96 |
| 780_I | 819_Y | 1.203 | 0.96 |
| 814_L | 818_G | 1.202 | 0.96 |
| 747_K | 751_M | 1.196 | 0.95 |
| 778_K | 781_H | 1.192 | 0.95 |
| 103_Q | 111_I | 1.192 | 0.95 |
| 136_D | 139_A | 1.190 | 0.95 |
| 836_I | 857_V | 1.189 | 0.95 |
| 427_E | 444_R | 1.187 | 0.95 |
| 805_N | 856_N | 1.181 | 0.95 |
| 570_I | 846_K | 1.180 | 0.95 |
| 345_V | 348_T | 1.176 | 0.95 |
| 590_V | 623_L | 1.176 | 0.95 |
| 368_L | 542_D | 1.174 | 0.95 |
| 454_S | 458_E | 1.173 | 0.95 |
| 102_I | 137_I | 1.172 | 0.95 |
| 596_L | 838_N | 1.170 | 0.95 |
| 588_K | 592_N | 1.170 | 0.95 |
| 788_L | 792_E | 1.169 | 0.95 |
| 177_Q | 180_Q | 1.167 | 0.95 |
| 803_K | 854_T | 1.167 | 0.95 |
| 548_E | 559_K | 1.167 | 0.95 |
| 388_L | 392_A | 1.167 | 0.95 |
| 432_E | 449_R | 1.164 | 0.94 |
| 569_L | 598_R | 1.156 | 0.94 |
| 21_L | 25_H | 1.153 | 0.94 |
| 649_K | 654_K | 1.148 | 0.94 |
| 779_A | 782_K | 1.146 | 0.94 |
| 102_I | 119_A | 1.141 | 0.94 |
| 578_S | 789_K | 1.140 | 0.94 |
| 361_I | 364_G | 1.139 | 0.94 |
| 68_V | 71_R | 1.135 | 0.93 |
| 658_T | 685_F | 1.134 | 0.93 |
| 849_I | 855_V | 1.133 | 0.93 |
| 729_L | 753_A | 1.131 | 0.93 |
| 173_D | 244_F | 1.130 | 0.93 |
| 368_L | 371_A | 1.128 | 0.93 |
| 791_I | 837_L | 1.120 | 0.93 |
| 777_R | 815_A | 1.120 | 0.93 |
| 90_Y | 94_K | 1.118 | 0.93 |
| 420_Q | 423_L | 1.117 | 0.93 |
| 102_I | 106_Q | 1.114 | 0.93 |
| 322_R | 712_Q | 1.112 | 0.93 |
| 743_Q | 773_N | 1.110 | 0.92 |
| 21_L | 66_K | 1.107 | 0.92 |
| 785_D | 789_K | 1.106 | 0.92 |
| 808_Q | 812_D | 1.105 | 0.92 |
| 98_D | 101_K | 1.102 | 0.92 |
| 33_I | 37_A | 1.101 | 0.92 |
| 744_E | 748_N | 1.099 | 0.92 |
| 32_P | 92_L | 1.098 | 0.92 |
| 349_V | 376_A | 1.097 | 0.92 |
| 748_N | 752_G | 1.094 | 0.92 |
| 10_R | 13_T | 1.092 | 0.92 |
| 421_L | 455_L | 1.088 | 0.91 |
| 849_I | 853_E | 1.083 | 0.91 |
| 460_E | 463_R | 1.079 | 0.91 |
| 203_R | 358_K | 1.078 | 0.91 |
| 758_F | 762_F | 1.078 | 0.91 |
| 7_F | 11_A | 1.077 | 0.91 |
| 746_T | 773_N | 1.076 | 0.91 |
| 98_D | 119_A | 1.076 | 0.91 |
| 564_S | 567_E | 1.075 | 0.91 |
| 456_Q | 460_E | 1.075 | 0.91 |
| 832_I | 836_I | 1.073 | 0.91 |
| 214_P | 329_G | 1.073 | 0.91 |
| 512_D | 515_K | 1.073 | 0.91 |
| 545_T | 548_E | 1.072 | 0.91 |
| 805_N | 854_T | 1.070 | 0.91 |
| 289_L | 298_A | 1.068 | 0.90 |
| 751_M | 755_R | 1.066 | 0.90 |
| 455_L | 459_L | 1.064 | 0.90 |
| 248_L | 289_L | 1.064 | 0.90 |
| 483_L | 517_I | 1.064 | 0.90 |
| 195_S | 198_R | 1.063 | 0.90 |
| 362_H | 404_A | 1.062 | 0.90 |
| 376_A | 380_K | 1.061 | 0.90 |
| 196_T | 210_L | 1.060 | 0.90 |
| 590_V | 770_V | 1.060 | 0.90 |
| 353_R | 373_V | 1.059 | 0.90 |
| 459_L | 463_R | 1.056 | 0.90 |
| 475_E | 478_Q | 1.056 | 0.90 |
| 652_V | 695_V | 1.055 | 0.90 |
| 752_G | 756_Q | 1.054 | 0.90 |
| 379_A | 395_L | 1.050 | 0.89 |
| 474_E | 478_Q | 1.050 | 0.89 |
| 247_D | 266_K | 1.049 | 0.89 |
| 33_I | 91_A | 1.048 | 0.89 |
| 792_E | 806_L | 1.047 | 0.89 |
| 685_F | 725_M | 1.047 | 0.89 |
| 410_K | 463_R | 1.047 | 0.89 |
| 647_S | 697_T | 1.046 | 0.89 |
| 14_I | 35_I | 1.045 | 0.89 |
| 488_N | 492_D | 1.045 | 0.89 |
| 272_I | 279_I | 1.044 | 0.89 |
| 214_P | 387_R | 1.041 | 0.89 |
| 175_T | 183_L | 1.035 | 0.88 |
| 622_E | 626_K | 1.034 | 0.88 |
| 64_L | 67_K | 1.030 | 0.88 |
| 790_E | 793_E | 1.026 | 0.88 |
| 15_L | 96_L | 1.025 | 0.88 |
| 570_I | 842_L | 1.022 | 0.88 |
| 603_N | 790_E | 1.021 | 0.88 |
| 513_I | 516_Q | 1.020 | 0.87 |
| 102_I | 105_Q | 1.020 | 0.87 |
| 471_H | 475_E | 1.019 | 0.87 |
| 622_E | 787_R | 1.018 | 0.87 |
| 374_T | 377_Q | 1.016 | 0.87 |
| 72_N | 129_I | 1.013 | 0.87 |
| 641_V | 654_K | 1.012 | 0.87 |
| 14_I | 113_Q | 1.010 | 0.87 |
| 468_E | 471_H | 1.009 | 0.87 |
| 654_K | 711_G | 1.008 | 0.87 |
| 205_K | 394_D | 1.008 | 0.87 |
| 421_L | 459_L | 1.006 | 0.87 |
| 17_L | 38_A | 1.005 | 0.86 |
| 139_A | 142_Q | 1.005 | 0.86 |
| 68_V | 132_E | 1.003 | 0.86 |
| 781_H | 785_D | 1.001 | 0.86 |
| 665_Y | 711_G | 1.001 | 0.86 |
| 648_E | 659_T | 1.001 | 0.86 |
| 349_V | 377_Q | 1.000 | 0.86 |
Prob = P(contact | scaled_score, seq/len).
Scaled Score = (raw_score/average(raw_scores)).
- Text file of contact predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
- Import to GREMLIN BETA - features includes ability to upload PDB and latest P(contact) calculation based on eLife 2015 fitting to PDB data.
GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled Score > 1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-position alignment confidence. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | M | Cov | P(%) | HHΔ | |
| 1qvrA | 3 | 0.8822 | 100 | 0.445 | Contact Map |
| 4d2uA | 6 | 0.8667 | 100 | 0.448 | Contact Map |
| 1r6bX | 1 | 0.761 | 100 | 0.473 | Contact Map |
| 3pxiA | 3 | 0.7841 | 100 | 0.5 | Contact Map |
| 4ciuA | 1 | 0.7225 | 100 | 0.572 | Contact Map |
| 3pxgA | 6 | 0.4912 | 100 | 0.745 | Contact Map |
| 3vkgA | 2 | 0.7985 | 100 | 0.768 | Contact Map |
| 4hseA | 1 | 0.4064 | 100 | 0.792 | Contact Map |
| 4lj9A | 1 | 0.3634 | 100 | 0.811 | Contact Map |
| 4akgA | 2 | 0.7985 | 100 | 0.842 | Contact Map |
Cov = coverage of hit
P(%) = probability
Sequence Conservation (Image Generated using WebLogo v3)