| jrfl |
| ID: | 1502107875 |
Query Sequence |
Download Alignment We filter this alignment to remove positions that have > 75% gaps before running GREMLIN. |
| Length: | 847 (847) | ||
| Sequences: | 2744 (337.2) | ||
| Seq/Len: | 3.240 | ||
| Nf(neff/√len): | 11.6 |
HHblits Results: (2016_02)
Sequences per length for each position, BEFORE the coverage/gap filter was applied
Legend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 3.240).
Sequences per length for each position, AFTER the coverage/gap filter was applied
Residue pairs sorted by coevolution strength:
Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] covarying residues with sequence seperation > 3. The i and j are positions as given in the input sequence.
| i | j | Scaled score | Prob |
| 280_T | 444_L | 4.612 | 1.00 |
| 493_K | 598_A | 3.803 | 1.00 |
| 623_E | 627_D | 3.650 | 1.00 |
| 746_L | 749_V | 3.236 | 1.00 |
| 738_R | 749_V | 3.234 | 1.00 |
| 650_E | 653_E | 2.901 | 1.00 |
| 649_Q | 653_E | 2.889 | 1.00 |
| 290_E | 333_K | 2.857 | 1.00 |
| 272_D | 275_T | 2.782 | 1.00 |
| 344_K | 347_E | 2.767 | 1.00 |
| 326_H | 330_S | 2.700 | 1.00 |
| 611_D | 615_N | 2.647 | 1.00 |
| 208_E | 374_G | 2.491 | 1.00 |
| 61_D | 64_V | 2.357 | 1.00 |
| 816_G | 820_I | 2.333 | 1.00 |
| 662_N | 674_K | 2.303 | 1.00 |
| 815_E | 820_I | 2.240 | 1.00 |
| 113_Q | 199_T | 2.228 | 1.00 |
| 653_E | 656_K | 2.213 | 1.00 |
| 156_F | 171_A | 2.172 | 1.00 |
| 64_V | 205_I | 2.156 | 1.00 |
| 321_D | 410_R | 2.136 | 1.00 |
| 646_K | 649_Q | 2.131 | 1.00 |
| 632_E | 635_T | 2.115 | 1.00 |
| 96_K | 272_D | 2.068 | 1.00 |
| 792_Q | 816_G | 2.066 | 1.00 |
| 267_V | 274_F | 2.055 | 1.00 |
| 272_D | 276_N | 2.048 | 1.00 |
| 328_N | 332_A | 2.039 | 1.00 |
| 355_V | 456_T | 2.027 | 1.00 |
| 227_D | 237_K | 2.011 | 1.00 |
| 228_K | 264_E | 1.986 | 1.00 |
| 158_I | 169_E | 1.977 | 1.00 |
| 412_K | 415_I | 1.959 | 1.00 |
| 216_A | 222_I | 1.957 | 1.00 |
| 420_E | 423_K | 1.952 | 1.00 |
| 737_G | 749_V | 1.942 | 1.00 |
| 808_A | 812_A | 1.941 | 1.00 |
| 91_H | 235_P | 1.921 | 1.00 |
| 84_V | 226_N | 1.921 | 1.00 |
| 621_E | 624_R | 1.909 | 1.00 |
| 195_T | 199_T | 1.863 | 0.99 |
| 788_W | 791_L | 1.859 | 0.99 |
| 354_I | 606_S | 1.855 | 0.99 |
| 276_N | 465_D | 1.853 | 0.99 |
| 354_I | 605_W | 1.838 | 0.99 |
| 723_G | 779_R | 1.806 | 0.99 |
| 796_Q | 800_N | 1.789 | 0.99 |
| 843_E | 846_L | 1.780 | 0.99 |
| 24_L | 605_W | 1.752 | 0.99 |
| 192_S | 197_V | 1.725 | 0.99 |
| 840_Q | 843_E | 1.720 | 0.99 |
| 302_K | 314_T | 1.715 | 0.99 |
| 45_K | 627_D | 1.709 | 0.99 |
| 164_D | 189_R | 1.709 | 0.99 |
| 20_L | 23_I | 1.707 | 0.99 |
| 792_Q | 815_E | 1.689 | 0.99 |
| 220_F | 284_Q | 1.686 | 0.99 |
| 766_L | 787_W | 1.680 | 0.98 |
| 305_H | 311_A | 1.676 | 0.98 |
| 642_N | 649_Q | 1.670 | 0.98 |
| 208_E | 220_F | 1.666 | 0.98 |
| 712_L | 747_I | 1.648 | 0.98 |
| 804_S | 808_A | 1.640 | 0.98 |
| 26_I | 605_W | 1.637 | 0.98 |
| 824_L | 828_Y | 1.636 | 0.98 |
| 342_V | 388_S | 1.619 | 0.98 |
| 105_E | 171_A | 1.612 | 0.98 |
| 806_L | 809_T | 1.611 | 0.98 |
| 779_R | 783_V | 1.596 | 0.98 |
| 656_K | 668_K | 1.591 | 0.98 |
| 558_Q | 620_M | 1.585 | 0.98 |
| 19_L | 23_I | 1.578 | 0.97 |
| 713_P | 717_G | 1.574 | 0.97 |
| 835_P | 840_Q | 1.557 | 0.97 |
| 267_V | 342_V | 1.556 | 0.97 |
| 738_R | 746_L | 1.554 | 0.97 |
| 16_G | 19_L | 1.552 | 0.97 |
| 48_T | 98_N | 1.549 | 0.97 |
| 741_N | 747_I | 1.548 | 0.97 |
| 691_T | 749_V | 1.547 | 0.97 |
| 24_L | 606_S | 1.546 | 0.97 |
| 807_N | 816_G | 1.542 | 0.97 |
| 64_V | 67_V | 1.531 | 0.97 |
| 828_Y | 831_I | 1.529 | 0.97 |
| 789_N | 792_Q | 1.526 | 0.97 |
| 229_T | 265_E | 1.526 | 0.97 |
| 513_F | 704_S | 1.524 | 0.97 |
| 45_K | 48_T | 1.519 | 0.97 |
| 46_E | 620_M | 1.505 | 0.96 |
| 462_G | 465_D | 1.493 | 0.96 |
| 774_E | 777_G | 1.490 | 0.96 |
| 20_L | 787_W | 1.483 | 0.96 |
| 286_K | 340_Q | 1.482 | 0.96 |
| 807_N | 815_E | 1.480 | 0.96 |
| 835_P | 839_R | 1.475 | 0.96 |
| 266_E | 344_K | 1.470 | 0.96 |
| 836_T | 842_L | 1.464 | 0.96 |
| 324_Q | 330_S | 1.464 | 0.96 |
| 816_G | 824_L | 1.462 | 0.95 |
| 796_Q | 844_R | 1.459 | 0.95 |
| 840_Q | 846_L | 1.459 | 0.95 |
| 329_I | 337_T | 1.453 | 0.95 |
| 229_T | 237_K | 1.453 | 0.95 |
| 828_Y | 832_L | 1.449 | 0.95 |
| 364_P | 368_M | 1.448 | 0.95 |
| 747_I | 766_L | 1.445 | 0.95 |
| 555_R | 558_Q | 1.430 | 0.95 |
| 837_R | 840_Q | 1.425 | 0.95 |
| 355_V | 458_I | 1.423 | 0.95 |
| 120_K | 420_E | 1.422 | 0.95 |
| 91_H | 621_E | 1.410 | 0.94 |
| 738_R | 745_A | 1.406 | 0.94 |
| 1_M | 24_L | 1.406 | 0.94 |
| 731_R | 737_G | 1.405 | 0.94 |
| 606_S | 790_L | 1.401 | 0.94 |
| 712_L | 741_N | 1.401 | 0.94 |
| 821_I | 824_L | 1.399 | 0.94 |
| 605_W | 790_L | 1.388 | 0.94 |
| 287_E | 336_D | 1.386 | 0.94 |
| 623_E | 631_S | 1.386 | 0.94 |
| 61_D | 206_S | 1.384 | 0.93 |
| 779_R | 792_Q | 1.383 | 0.93 |
| 24_L | 27_C | 1.380 | 0.93 |
| 7_R | 20_L | 1.379 | 0.93 |
| 839_R | 843_E | 1.377 | 0.93 |
| 13_L | 20_L | 1.367 | 0.93 |
| 26_I | 606_S | 1.360 | 0.93 |
| 229_T | 233_K | 1.360 | 0.93 |
| 433_Q | 437_S | 1.359 | 0.93 |
| 736_S | 739_L | 1.347 | 0.92 |
| 667_T | 674_K | 1.340 | 0.92 |
| 1_M | 5_G | 1.339 | 0.92 |
| 292_N | 437_S | 1.339 | 0.92 |
| 146_M | 149_G | 1.339 | 0.92 |
| 179_V | 189_R | 1.338 | 0.92 |
| 64_V | 284_Q | 1.334 | 0.92 |
| 220_F | 481_K | 1.332 | 0.92 |
| 772_I | 787_W | 1.332 | 0.92 |
| 416_N | 423_K | 1.332 | 0.92 |
| 48_T | 623_E | 1.330 | 0.92 |
| 841_G | 846_L | 1.328 | 0.91 |
| 827_T | 830_A | 1.328 | 0.91 |
| 713_P | 816_G | 1.326 | 0.91 |
| 833_H | 844_R | 1.324 | 0.91 |
| 509_V | 544_N | 1.324 | 0.91 |
| 653_E | 667_T | 1.323 | 0.91 |
| 171_A | 558_Q | 1.321 | 0.91 |
| 367_V | 498_Q | 1.320 | 0.91 |
| 713_P | 815_E | 1.319 | 0.91 |
| 84_V | 620_M | 1.319 | 0.91 |
| 303_S | 314_T | 1.319 | 0.91 |
| 305_H | 310_R | 1.317 | 0.91 |
| 779_R | 804_S | 1.317 | 0.91 |
| 556_M | 637_I | 1.316 | 0.91 |
| 91_H | 624_R | 1.316 | 0.91 |
| 199_T | 416_N | 1.315 | 0.91 |
| 132_D | 136_T | 1.313 | 0.91 |
| 837_R | 843_E | 1.313 | 0.91 |
| 1_M | 605_W | 1.307 | 0.91 |
| 765_L | 772_I | 1.305 | 0.91 |
| 788_W | 800_N | 1.304 | 0.90 |
| 189_R | 192_S | 1.303 | 0.90 |
| 147_E | 151_I | 1.302 | 0.90 |
| 10_Y | 19_L | 1.299 | 0.90 |
| 226_N | 229_T | 1.299 | 0.90 |
| 832_L | 844_R | 1.295 | 0.90 |
| 765_L | 788_W | 1.294 | 0.90 |
| 175_K | 192_S | 1.290 | 0.90 |
| 544_N | 642_N | 1.281 | 0.89 |
| 839_R | 846_L | 1.280 | 0.89 |
| 658_A | 665_D | 1.278 | 0.89 |
| 749_V | 755_C | 1.278 | 0.89 |
| 324_Q | 328_N | 1.270 | 0.89 |
| 783_V | 792_Q | 1.268 | 0.89 |
| 787_W | 807_N | 1.265 | 0.89 |
| 788_W | 795_S | 1.258 | 0.88 |
| 161_S | 192_S | 1.256 | 0.88 |
| 417_M | 420_E | 1.255 | 0.88 |
| 331_R | 403_N | 1.254 | 0.88 |
| 731_R | 787_W | 1.251 | 0.88 |
| 772_I | 779_R | 1.251 | 0.88 |
| 24_L | 717_G | 1.251 | 0.88 |
| 761_R | 764_D | 1.250 | 0.88 |
| 731_R | 747_I | 1.249 | 0.88 |
| 20_L | 48_T | 1.248 | 0.88 |
| 689_V | 696_V | 1.248 | 0.88 |
| 61_D | 598_A | 1.247 | 0.88 |
| 658_A | 662_N | 1.247 | 0.88 |
| 423_K | 558_Q | 1.245 | 0.88 |
| 775_L | 778_R | 1.242 | 0.87 |
| 2_R | 612_R | 1.242 | 0.87 |
| 772_I | 795_S | 1.240 | 0.87 |
| 747_I | 795_S | 1.236 | 0.87 |
| 714_A | 747_I | 1.230 | 0.87 |
| 274_F | 348_Q | 1.229 | 0.87 |
| 10_Y | 23_I | 1.229 | 0.87 |
| 287_E | 340_Q | 1.228 | 0.87 |
| 3_V | 24_L | 1.226 | 0.86 |
| 423_K | 433_Q | 1.220 | 0.86 |
| 667_T | 820_I | 1.216 | 0.86 |
| 374_G | 435_R | 1.215 | 0.86 |
| 13_L | 64_V | 1.214 | 0.86 |
| 330_S | 437_S | 1.213 | 0.86 |
| 835_P | 846_L | 1.213 | 0.86 |
| 21_L | 28_S | 1.212 | 0.86 |
| 435_R | 483_E | 1.212 | 0.86 |
| 319_I | 606_S | 1.210 | 0.85 |
| 24_L | 354_I | 1.208 | 0.85 |
| 135_A | 138_T | 1.205 | 0.85 |
| 413_Q | 421_V | 1.204 | 0.85 |
| 302_K | 316_G | 1.204 | 0.85 |
| 834_I | 840_Q | 1.203 | 0.85 |
| 326_H | 406_T | 1.203 | 0.85 |
| 637_I | 689_V | 1.201 | 0.85 |
| 418_W | 426_Y | 1.198 | 0.85 |
| 113_Q | 195_T | 1.198 | 0.85 |
| 747_I | 765_L | 1.196 | 0.85 |
| 7_R | 25_M | 1.195 | 0.85 |
| 493_K | 726_E | 1.194 | 0.84 |
| 131_K | 689_V | 1.192 | 0.84 |
| 267_V | 388_S | 1.192 | 0.84 |
| 787_W | 803_V | 1.192 | 0.84 |
| 287_E | 333_K | 1.191 | 0.84 |
| 462_G | 467_R | 1.191 | 0.84 |
| 803_V | 807_N | 1.188 | 0.84 |
| 712_L | 723_G | 1.187 | 0.84 |
| 812_A | 824_L | 1.185 | 0.84 |
| 526_M | 544_N | 1.185 | 0.84 |
| 835_P | 843_E | 1.181 | 0.84 |
| 64_V | 208_E | 1.181 | 0.84 |
| 714_A | 816_G | 1.181 | 0.84 |
| 791_L | 844_R | 1.173 | 0.83 |
| 178_V | 189_R | 1.171 | 0.83 |
| 755_C | 758_S | 1.171 | 0.83 |
| 844_R | 847_L | 1.169 | 0.83 |
| 781_W | 786_Y | 1.167 | 0.83 |
| 431_R | 435_R | 1.165 | 0.82 |
| 319_I | 605_W | 1.164 | 0.82 |
| 712_L | 731_R | 1.152 | 0.81 |
| 1_M | 606_S | 1.148 | 0.81 |
| 620_M | 623_E | 1.147 | 0.81 |
| 1_M | 26_I | 1.143 | 0.81 |
| 772_I | 800_N | 1.141 | 0.81 |
| 268_V | 274_F | 1.137 | 0.80 |
| 26_I | 354_I | 1.137 | 0.80 |
| 27_C | 605_W | 1.136 | 0.80 |
| 501_K | 513_F | 1.134 | 0.80 |
| 10_Y | 20_L | 1.134 | 0.80 |
| 341_I | 749_V | 1.131 | 0.80 |
| 4_K | 8_K | 1.129 | 0.80 |
| 731_R | 795_S | 1.128 | 0.80 |
| 161_S | 197_V | 1.128 | 0.80 |
| 228_K | 265_E | 1.125 | 0.79 |
| 364_P | 423_K | 1.124 | 0.79 |
| 233_K | 272_D | 1.124 | 0.79 |
| 64_V | 374_G | 1.123 | 0.79 |
| 61_D | 67_V | 1.122 | 0.79 |
| 757_F | 764_D | 1.121 | 0.79 |
| 574_V | 623_E | 1.120 | 0.79 |
| 766_L | 769_V | 1.120 | 0.79 |
| 169_E | 302_K | 1.116 | 0.79 |
| 637_I | 659_S | 1.116 | 0.79 |
| 766_L | 788_W | 1.110 | 0.78 |
| 789_N | 796_Q | 1.108 | 0.78 |
| 310_R | 498_Q | 1.105 | 0.78 |
| 48_T | 650_E | 1.104 | 0.77 |
| 46_E | 84_V | 1.103 | 0.77 |
| 623_E | 626_I | 1.102 | 0.77 |
| 290_E | 294_T | 1.099 | 0.77 |
| 1_M | 27_C | 1.099 | 0.77 |
| 297_N | 433_Q | 1.099 | 0.77 |
| 447_R | 450_G | 1.095 | 0.77 |
| 14_W | 20_L | 1.094 | 0.77 |
| 149_G | 152_K | 1.094 | 0.77 |
| 10_Y | 635_T | 1.093 | 0.76 |
| 45_K | 623_E | 1.093 | 0.76 |
| 342_V | 390_W | 1.092 | 0.76 |
| 779_R | 816_G | 1.092 | 0.76 |
| 20_L | 796_Q | 1.091 | 0.76 |
| 2_R | 24_L | 1.090 | 0.76 |
| 199_T | 620_M | 1.089 | 0.76 |
| 583_L | 605_W | 1.089 | 0.76 |
| 46_E | 229_T | 1.088 | 0.76 |
| 11_Q | 25_M | 1.087 | 0.76 |
| 284_Q | 586_I | 1.084 | 0.76 |
| 691_T | 755_C | 1.084 | 0.76 |
| 48_T | 171_A | 1.083 | 0.76 |
| 765_L | 787_W | 1.083 | 0.76 |
| 714_A | 722_E | 1.082 | 0.75 |
| 292_N | 435_R | 1.081 | 0.75 |
| 4_K | 29_A | 1.079 | 0.75 |
| 586_I | 593_L | 1.078 | 0.75 |
| 152_K | 208_E | 1.077 | 0.75 |
| 834_I | 841_G | 1.076 | 0.75 |
| 772_I | 788_W | 1.076 | 0.75 |
| 284_Q | 288_S | 1.075 | 0.75 |
| 3_V | 605_W | 1.075 | 0.75 |
| 1_M | 354_I | 1.074 | 0.75 |
| 46_E | 610_L | 1.074 | 0.75 |
| 721_P | 844_R | 1.073 | 0.75 |
| 447_R | 457_E | 1.073 | 0.75 |
| 779_R | 815_E | 1.072 | 0.75 |
| 21_L | 481_K | 1.072 | 0.75 |
| 631_S | 637_I | 1.071 | 0.74 |
| 45_K | 483_E | 1.068 | 0.74 |
| 714_A | 815_E | 1.068 | 0.74 |
| 662_N | 665_D | 1.068 | 0.74 |
| 548_R | 555_R | 1.067 | 0.74 |
| 715_P | 718_P | 1.065 | 0.74 |
| 783_V | 816_G | 1.065 | 0.74 |
| 20_L | 714_A | 1.064 | 0.74 |
| 779_R | 807_N | 1.063 | 0.74 |
| 781_W | 785_K | 1.062 | 0.74 |
| 778_R | 816_G | 1.061 | 0.73 |
| 175_K | 191_I | 1.061 | 0.73 |
| 681_G | 684_V | 1.060 | 0.73 |
| 164_D | 312_F | 1.060 | 0.73 |
| 721_P | 796_Q | 1.057 | 0.73 |
| 836_T | 839_R | 1.057 | 0.73 |
| 509_V | 653_E | 1.056 | 0.73 |
| 745_A | 749_V | 1.055 | 0.73 |
| 766_L | 791_L | 1.054 | 0.73 |
| 280_T | 285_L | 1.054 | 0.73 |
| 638_E | 645_E | 1.054 | 0.73 |
| 401_E | 404_T | 1.053 | 0.73 |
| 481_K | 642_N | 1.051 | 0.72 |
| 342_V | 435_R | 1.051 | 0.72 |
| 178_V | 182_D | 1.051 | 0.72 |
| 736_S | 740_V | 1.051 | 0.72 |
| 307_G | 310_R | 1.050 | 0.72 |
| 40_G | 44_W | 1.049 | 0.72 |
| 98_N | 431_R | 1.047 | 0.72 |
| 481_K | 649_Q | 1.046 | 0.72 |
| 365_E | 379_Y | 1.046 | 0.72 |
| 195_T | 416_N | 1.044 | 0.72 |
| 796_Q | 807_N | 1.044 | 0.72 |
| 830_A | 835_P | 1.043 | 0.72 |
| 7_R | 747_I | 1.042 | 0.72 |
| 36_T | 40_G | 1.041 | 0.71 |
| 399_N | 404_T | 1.040 | 0.71 |
| 744_L | 753_S | 1.040 | 0.71 |
| 83_V | 642_N | 1.039 | 0.71 |
| 737_G | 766_L | 1.039 | 0.71 |
| 574_V | 665_D | 1.038 | 0.71 |
| 837_R | 846_L | 1.038 | 0.71 |
| 794_W | 797_E | 1.038 | 0.71 |
| 3_V | 606_S | 1.037 | 0.71 |
| 713_P | 737_G | 1.037 | 0.71 |
| 605_W | 716_R | 1.034 | 0.71 |
| 329_I | 344_K | 1.033 | 0.71 |
| 156_F | 558_Q | 1.032 | 0.70 |
| 15_K | 29_A | 1.032 | 0.70 |
| 8_K | 20_L | 1.032 | 0.70 |
| 731_R | 738_R | 1.032 | 0.70 |
| 832_L | 847_L | 1.031 | 0.70 |
| 714_A | 731_R | 1.031 | 0.70 |
| 779_R | 796_Q | 1.031 | 0.70 |
| 134_N | 137_N | 1.031 | 0.70 |
| 8_K | 787_W | 1.030 | 0.70 |
| 272_D | 279_K | 1.029 | 0.70 |
| 747_I | 788_W | 1.027 | 0.70 |
| 418_W | 421_V | 1.027 | 0.70 |
| 132_D | 138_T | 1.026 | 0.70 |
| 603_A | 711_L | 1.026 | 0.70 |
| 788_W | 831_I | 1.025 | 0.70 |
| 763_R | 767_L | 1.025 | 0.70 |
| 267_V | 769_V | 1.024 | 0.70 |
| 834_I | 837_R | 1.022 | 0.69 |
| 809_T | 815_E | 1.022 | 0.69 |
| 574_V | 579_G | 1.022 | 0.69 |
| 411_I | 428_P | 1.022 | 0.69 |
| 731_R | 766_L | 1.020 | 0.69 |
| 220_F | 274_F | 1.018 | 0.69 |
| 59_A | 64_V | 1.017 | 0.69 |
| 154_C | 159_T | 1.017 | 0.69 |
| 789_N | 800_N | 1.015 | 0.69 |
| 731_R | 741_N | 1.015 | 0.69 |
| 12_Y | 20_L | 1.014 | 0.69 |
| 1_M | 6_I | 1.014 | 0.69 |
| 290_E | 437_S | 1.014 | 0.69 |
| 101_E | 722_E | 1.014 | 0.69 |
| 7_R | 24_L | 1.012 | 0.68 |
| 768_T | 772_I | 1.010 | 0.68 |
| 171_A | 420_E | 1.010 | 0.68 |
| 159_T | 164_D | 1.010 | 0.68 |
| 266_E | 275_T | 1.010 | 0.68 |
| 836_T | 840_Q | 1.009 | 0.68 |
| 794_W | 801_S | 1.009 | 0.68 |
| 284_Q | 374_G | 1.008 | 0.68 |
| 189_R | 417_M | 1.008 | 0.68 |
| 773_V | 776_L | 1.006 | 0.68 |
| 747_I | 791_L | 1.006 | 0.68 |
| 423_K | 435_R | 1.006 | 0.68 |
| 725_E | 761_R | 1.005 | 0.68 |
| 208_E | 342_V | 1.004 | 0.67 |
| 276_N | 279_K | 1.003 | 0.67 |
| 837_R | 841_G | 1.003 | 0.67 |
| 199_T | 493_K | 1.003 | 0.67 |
| 653_E | 714_A | 1.002 | 0.67 |
| 775_L | 782_E | 1.001 | 0.67 |
| 679_I | 684_V | 1.000 | 0.67 |
| 413_Q | 418_W | 1.000 | 0.67 |
Prob = P(contact | scaled_score, seq/len).
Scaled Score = (raw_score/average(raw_scores)).
- Text file of contact predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
- Import to GREMLIN BETA - features includes ability to upload PDB and latest P(contact) calculation based on eLife 2015 fitting to PDB data.
GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled Score > 1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-position alignment confidence. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | M | Cov | P(%) | HHΔ | |
| 4tvpG | 1 | 0.5325 | 100 | 0.435 | Contact Map |
| 4r4hA | 1 | 0.3967 | 100 | 0.481 | Contact Map |
| 4jzzA | 1 | 0.3955 | 100 | 0.559 | Contact Map |
| 3lqaG | 1 | 0.3388 | 100 | 0.632 | Contact Map |
| 2bf1A | 1 | 0.3471 | 100 | 0.642 | Contact Map |
| 4i3sG | 1 | 0.2102 | 100 | 0.819 | Contact Map |
| 4tvpB | 1 | 0.1488 | 100 | 0.823 | Contact Map |
| 3tygA | 1 | 0.183 | 100 | 0.846 | Contact Map |
| 1qbzA | 3 | 0.1417 | 100 | 0.859 | Contact Map |
| 4jpkA | 1 | 0.1889 | 100 | 0.876 | Contact Map |
Cov = coverage of hit
P(%) = probability
Sequence Conservation (Image Generated using WebLogo v3)