| AtRPM1 |
| ID: | 1470828282 |
Query Sequence |
Download Alignment We filter this alignment to remove positions that have > 75% gaps before running GREMLIN. |
| Length: | 926 (880) | ||
| Sequences: | 3378 (2396.4) | ||
| Seq/Len: | 3.839 | ||
| Nf(neff/√len): | 80.8 |
HHblits Results: (2016_02)
Sequences per length for each position, BEFORE the coverage/gap filter was applied
Legend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 3.839).
Sequences per length for each position, AFTER the coverage/gap filter was applied
Residue pairs sorted by coevolution strength:
Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] covarying residues with sequence seperation > 3. The i and j are positions as given in the input sequence.
| i | j | Scaled score | Prob |
| 198_V | 210_S | 3.506 | 1.00 |
| 317_M | 332_E | 3.256 | 1.00 |
| 423_S | 427_L | 3.243 | 1.00 |
| 654_Y | 688_V | 3.201 | 1.00 |
| 126_Q | 130_D | 3.177 | 1.00 |
| 424_F | 427_L | 3.118 | 1.00 |
| 341_A | 380_I | 3.015 | 1.00 |
| 363_E | 367_R | 2.944 | 1.00 |
| 471_E | 653_R | 2.884 | 1.00 |
| 424_F | 428_P | 2.870 | 1.00 |
| 806_V | 829_K | 2.853 | 1.00 |
| 853_Q | 877_Q | 2.823 | 1.00 |
| 368_K | 371_E | 2.642 | 1.00 |
| 390_K | 395_E | 2.594 | 1.00 |
| 829_K | 853_Q | 2.576 | 1.00 |
| 314_T | 320_A | 2.569 | 1.00 |
| 338_E | 371_E | 2.561 | 1.00 |
| 759_I | 762_L | 2.516 | 1.00 |
| 825_F | 828_L | 2.462 | 1.00 |
| 612_S | 633_N | 2.428 | 1.00 |
| 833_I | 836_M | 2.382 | 1.00 |
| 421_F | 425_N | 2.360 | 1.00 |
| 876_L | 879_L | 2.335 | 1.00 |
| 735_R | 760_E | 2.330 | 1.00 |
| 860_C | 863_L | 2.322 | 1.00 |
| 420_M | 424_F | 2.315 | 1.00 |
| 224_E | 279_K | 2.268 | 1.00 |
| 43_S | 66_T | 2.254 | 1.00 |
| 447_M | 501_F | 2.221 | 1.00 |
| 230_T | 444_N | 2.220 | 1.00 |
| 46_E | 62_Q | 2.218 | 1.00 |
| 420_M | 423_S | 2.175 | 1.00 |
| 220_R | 226_Y | 2.159 | 1.00 |
| 420_M | 427_L | 2.134 | 1.00 |
| 180_G | 184_G | 2.097 | 1.00 |
| 805_L | 808_L | 2.089 | 1.00 |
| 66_T | 70_N | 2.064 | 1.00 |
| 211_A | 215_K | 2.026 | 1.00 |
| 342_W | 367_R | 2.025 | 1.00 |
| 457_M | 462_V | 2.025 | 1.00 |
| 423_S | 428_P | 2.004 | 1.00 |
| 459_Q | 544_H | 1.949 | 1.00 |
| 626_L | 629_L | 1.936 | 1.00 |
| 314_T | 319_V | 1.931 | 1.00 |
| 686_L | 689_M | 1.925 | 1.00 |
| 828_L | 831_L | 1.919 | 1.00 |
| 341_A | 344_L | 1.919 | 1.00 |
| 313_T | 319_V | 1.897 | 1.00 |
| 342_W | 346_S | 1.893 | 1.00 |
| 180_G | 218_S | 1.893 | 1.00 |
| 64_F | 67_F | 1.884 | 1.00 |
| 420_M | 428_P | 1.883 | 1.00 |
| 453_I | 474_A | 1.883 | 1.00 |
| 397_K | 401_S | 1.874 | 1.00 |
| 35_K | 39_L | 1.869 | 1.00 |
| 755_A | 774_W | 1.851 | 1.00 |
| 419_I | 423_S | 1.849 | 1.00 |
| 451_R | 587_D | 1.844 | 1.00 |
| 202_G | 505_D | 1.843 | 1.00 |
| 36_K | 70_N | 1.840 | 1.00 |
| 202_G | 315_R | 1.840 | 1.00 |
| 852_L | 855_L | 1.827 | 1.00 |
| 435_F | 511_A | 1.816 | 0.99 |
| 449_R | 475_D | 1.806 | 0.99 |
| 683_L | 689_M | 1.800 | 0.99 |
| 449_R | 478_L | 1.783 | 0.99 |
| 473_V | 477_Y | 1.782 | 0.99 |
| 229_V | 244_M | 1.775 | 0.99 |
| 130_D | 134_R | 1.771 | 0.99 |
| 201_M | 376_L | 1.761 | 0.99 |
| 416_V | 427_L | 1.757 | 0.99 |
| 419_I | 424_F | 1.750 | 0.99 |
| 624_H | 645_G | 1.728 | 0.99 |
| 131_S | 134_R | 1.719 | 0.99 |
| 652_L | 655_L | 1.711 | 0.99 |
| 418_S | 424_F | 1.700 | 0.99 |
| 315_R | 423_S | 1.699 | 0.99 |
| 438_C | 487_L | 1.685 | 0.99 |
| 286_D | 289_W | 1.684 | 0.99 |
| 807_W | 830_I | 1.684 | 0.99 |
| 423_S | 426_D | 1.681 | 0.99 |
| 431_L | 477_Y | 1.669 | 0.99 |
| 366_A | 369_L | 1.664 | 0.99 |
| 629_L | 632_L | 1.658 | 0.99 |
| 315_R | 319_V | 1.654 | 0.99 |
| 76_Y | 80_D | 1.649 | 0.99 |
| 630_E | 651_K | 1.645 | 0.99 |
| 313_T | 320_A | 1.634 | 0.99 |
| 48_T | 51_H | 1.623 | 0.99 |
| 417_R | 424_F | 1.615 | 0.99 |
| 626_L | 632_L | 1.613 | 0.99 |
| 621_K | 645_G | 1.610 | 0.99 |
| 833_I | 839_L | 1.607 | 0.98 |
| 628_N | 651_K | 1.595 | 0.98 |
| 633_N | 656_I | 1.587 | 0.98 |
| 849_M | 852_L | 1.585 | 0.98 |
| 428_P | 431_L | 1.584 | 0.98 |
| 416_V | 423_S | 1.579 | 0.98 |
| 266_R | 270_E | 1.578 | 0.98 |
| 337_K | 340_E | 1.578 | 0.98 |
| 443_V | 508_W | 1.578 | 0.98 |
| 416_V | 424_F | 1.576 | 0.98 |
| 422_L | 427_L | 1.574 | 0.98 |
| 212_N | 215_K | 1.560 | 0.98 |
| 857_V | 860_C | 1.550 | 0.98 |
| 422_L | 426_D | 1.548 | 0.98 |
| 817_P | 840_T | 1.546 | 0.98 |
| 441_F | 455_M | 1.546 | 0.98 |
| 30_E | 119_G | 1.542 | 0.98 |
| 480_E | 484_R | 1.542 | 0.98 |
| 422_L | 428_P | 1.540 | 0.98 |
| 227_A | 283_V | 1.533 | 0.98 |
| 362_L | 366_A | 1.530 | 0.98 |
| 203_G | 206_K | 1.529 | 0.98 |
| 641_E | 675_R | 1.523 | 0.98 |
| 370_V | 380_I | 1.517 | 0.98 |
| 816_G | 819_L | 1.516 | 0.98 |
| 419_I | 427_L | 1.513 | 0.98 |
| 238_E | 265_Y | 1.506 | 0.97 |
| 47_D | 51_H | 1.505 | 0.97 |
| 77_Q | 124_M | 1.505 | 0.97 |
| 47_D | 61_T | 1.503 | 0.97 |
| 344_L | 380_I | 1.500 | 0.97 |
| 67_F | 71_T | 1.498 | 0.97 |
| 200_G | 205_G | 1.498 | 0.97 |
| 441_F | 451_R | 1.497 | 0.97 |
| 350_F | 357_C | 1.497 | 0.97 |
| 469_K | 472_E | 1.491 | 0.97 |
| 340_E | 343_V | 1.490 | 0.97 |
| 446_R | 502_K | 1.485 | 0.97 |
| 178_P | 331_H | 1.481 | 0.97 |
| 76_Y | 83_D | 1.474 | 0.97 |
| 200_G | 203_G | 1.474 | 0.97 |
| 416_V | 420_M | 1.472 | 0.97 |
| 635_K | 656_I | 1.472 | 0.97 |
| 1_M | 6_V | 1.472 | 0.97 |
| 505_D | 509_E | 1.466 | 0.97 |
| 202_G | 504_H | 1.465 | 0.97 |
| 39_L | 69_A | 1.464 | 0.97 |
| 478_L | 501_F | 1.462 | 0.97 |
| 362_L | 365_I | 1.460 | 0.97 |
| 708_L | 711_I | 1.458 | 0.97 |
| 287_D | 444_N | 1.457 | 0.97 |
| 33_K | 127_S | 1.454 | 0.97 |
| 39_L | 66_T | 1.450 | 0.97 |
| 457_M | 470_A | 1.442 | 0.96 |
| 784_L | 808_L | 1.430 | 0.96 |
| 442_P | 445_Y | 1.427 | 0.96 |
| 603_M | 606_L | 1.426 | 0.96 |
| 202_G | 289_W | 1.425 | 0.96 |
| 337_K | 341_A | 1.423 | 0.96 |
| 369_L | 383_L | 1.423 | 0.96 |
| 376_L | 379_A | 1.422 | 0.96 |
| 80_D | 562_H | 1.421 | 0.96 |
| 393_E | 397_K | 1.421 | 0.96 |
| 840_T | 864_E | 1.412 | 0.96 |
| 587_D | 610_N | 1.404 | 0.96 |
| 421_F | 427_L | 1.400 | 0.96 |
| 623_F | 629_L | 1.397 | 0.95 |
| 20_E | 112_H | 1.397 | 0.95 |
| 37_E | 41_M | 1.396 | 0.95 |
| 311_M | 314_T | 1.387 | 0.95 |
| 459_Q | 585_A | 1.386 | 0.95 |
| 227_A | 244_M | 1.386 | 0.95 |
| 422_L | 425_N | 1.386 | 0.95 |
| 736_F | 761_K | 1.385 | 0.95 |
| 349_A | 384_G | 1.384 | 0.95 |
| 654_Y | 687_Q | 1.383 | 0.95 |
| 437_Y | 459_Q | 1.378 | 0.95 |
| 231_I | 240_V | 1.378 | 0.95 |
| 313_T | 317_M | 1.378 | 0.95 |
| 380_I | 384_G | 1.378 | 0.95 |
| 508_W | 512_L | 1.375 | 0.95 |
| 178_P | 181_K | 1.375 | 0.95 |
| 44_F | 68_V | 1.375 | 0.95 |
| 203_G | 207_T | 1.374 | 0.95 |
| 289_W | 505_D | 1.374 | 0.95 |
| 701_N | 705_M | 1.373 | 0.95 |
| 503_M | 511_A | 1.373 | 0.95 |
| 280_R | 308_S | 1.369 | 0.95 |
| 48_T | 68_V | 1.361 | 0.95 |
| 311_M | 315_R | 1.356 | 0.94 |
| 236_V | 239_D | 1.356 | 0.94 |
| 630_E | 653_R | 1.347 | 0.94 |
| 183_I | 216_S | 1.340 | 0.94 |
| 227_A | 247_E | 1.338 | 0.94 |
| 127_S | 131_S | 1.336 | 0.94 |
| 368_K | 400_Y | 1.333 | 0.94 |
| 208_T | 505_D | 1.331 | 0.94 |
| 26_G | 30_E | 1.317 | 0.93 |
| 204_S | 485_N | 1.313 | 0.93 |
| 271_K | 274_E | 1.308 | 0.93 |
| 471_E | 687_Q | 1.303 | 0.93 |
| 610_N | 614_T | 1.300 | 0.93 |
| 228_W | 284_V | 1.297 | 0.93 |
| 205_G | 209_L | 1.296 | 0.93 |
| 204_S | 333_I | 1.292 | 0.92 |
| 813_A | 816_G | 1.290 | 0.92 |
| 282_I | 311_M | 1.290 | 0.92 |
| 342_W | 366_A | 1.290 | 0.92 |
| 802_L | 805_L | 1.290 | 0.92 |
| 37_E | 135_Y | 1.286 | 0.92 |
| 290_T | 293_L | 1.285 | 0.92 |
| 129_S | 132_M | 1.280 | 0.92 |
| 425_N | 428_P | 1.277 | 0.92 |
| 734_I | 737_L | 1.272 | 0.92 |
| 129_S | 134_R | 1.271 | 0.92 |
| 70_N | 131_S | 1.268 | 0.91 |
| 241_F | 268_L | 1.265 | 0.91 |
| 281_Y | 302_P | 1.263 | 0.91 |
| 683_L | 686_L | 1.262 | 0.91 |
| 446_R | 490_I | 1.260 | 0.91 |
| 313_T | 423_S | 1.259 | 0.91 |
| 313_T | 316_D | 1.257 | 0.91 |
| 639_I | 642_L | 1.254 | 0.91 |
| 214_F | 227_A | 1.253 | 0.91 |
| 8_F | 11_G | 1.253 | 0.91 |
| 606_L | 609_L | 1.251 | 0.91 |
| 428_P | 477_Y | 1.251 | 0.91 |
| 610_N | 633_N | 1.250 | 0.91 |
| 468_V | 476_S | 1.250 | 0.91 |
| 584_R | 605_N | 1.249 | 0.91 |
| 2_A | 5_T | 1.249 | 0.91 |
| 208_T | 231_I | 1.248 | 0.91 |
| 183_I | 213_I | 1.248 | 0.91 |
| 313_T | 318_N | 1.245 | 0.90 |
| 244_M | 297_I | 1.244 | 0.90 |
| 863_L | 867_P | 1.243 | 0.90 |
| 276_L | 302_P | 1.241 | 0.90 |
| 239_D | 243_T | 1.240 | 0.90 |
| 430_P | 477_Y | 1.236 | 0.90 |
| 421_F | 424_F | 1.234 | 0.90 |
| 30_E | 33_K | 1.234 | 0.90 |
| 336_L | 344_L | 1.232 | 0.90 |
| 454_R | 631_T | 1.231 | 0.90 |
| 399_V | 402_T | 1.230 | 0.90 |
| 214_F | 226_Y | 1.229 | 0.90 |
| 421_F | 426_D | 1.227 | 0.90 |
| 312_M | 319_V | 1.226 | 0.90 |
| 542_S | 545_L | 1.225 | 0.89 |
| 805_L | 810_F | 1.224 | 0.89 |
| 838_H | 862_G | 1.224 | 0.89 |
| 228_W | 235_Y | 1.221 | 0.89 |
| 200_G | 206_K | 1.221 | 0.89 |
| 830_I | 854_K | 1.220 | 0.89 |
| 437_Y | 441_F | 1.220 | 0.89 |
| 179_K | 218_S | 1.218 | 0.89 |
| 869_G | 876_L | 1.218 | 0.89 |
| 231_I | 289_W | 1.218 | 0.89 |
| 361_N | 393_E | 1.217 | 0.89 |
| 177_A | 181_K | 1.217 | 0.89 |
| 313_T | 424_F | 1.216 | 0.89 |
| 458_A | 631_T | 1.214 | 0.89 |
| 243_T | 247_E | 1.213 | 0.89 |
| 345_F | 370_V | 1.212 | 0.89 |
| 601_V | 622_N | 1.208 | 0.89 |
| 373_C | 376_L | 1.207 | 0.89 |
| 562_H | 584_R | 1.201 | 0.88 |
| 379_A | 484_R | 1.199 | 0.88 |
| 486_M | 507_I | 1.198 | 0.88 |
| 88_H | 91_G | 1.197 | 0.88 |
| 39_L | 70_N | 1.197 | 0.88 |
| 444_N | 505_D | 1.197 | 0.88 |
| 281_Y | 308_S | 1.197 | 0.88 |
| 423_S | 435_F | 1.188 | 0.87 |
| 307_G | 310_V | 1.188 | 0.87 |
| 289_W | 315_R | 1.185 | 0.87 |
| 232_S | 289_W | 1.184 | 0.87 |
| 187_L | 196_V | 1.183 | 0.87 |
| 891_R | 905_H | 1.180 | 0.87 |
| 613_K | 636_H | 1.179 | 0.87 |
| 40_I | 131_S | 1.176 | 0.87 |
| 478_L | 482_V | 1.176 | 0.87 |
| 264_G | 267_E | 1.172 | 0.86 |
| 206_K | 209_L | 1.171 | 0.86 |
| 33_K | 122_N | 1.169 | 0.86 |
| 840_T | 862_G | 1.169 | 0.86 |
| 270_E | 274_E | 1.168 | 0.86 |
| 201_M | 204_S | 1.168 | 0.86 |
| 852_L | 863_L | 1.167 | 0.86 |
| 40_I | 63_L | 1.167 | 0.86 |
| 876_L | 881_L | 1.166 | 0.86 |
| 202_G | 287_D | 1.160 | 0.86 |
| 869_G | 873_L | 1.159 | 0.86 |
| 838_H | 841_E | 1.154 | 0.85 |
| 81_I | 121_V | 1.154 | 0.85 |
| 233_K | 443_V | 1.149 | 0.85 |
| 231_I | 235_Y | 1.145 | 0.85 |
| 227_A | 248_F | 1.141 | 0.84 |
| 854_K | 878_E | 1.140 | 0.84 |
| 67_F | 132_M | 1.139 | 0.84 |
| 446_R | 500_A | 1.139 | 0.84 |
| 125_I | 131_S | 1.134 | 0.84 |
| 884_V | 888_L | 1.134 | 0.84 |
| 375_G | 378_L | 1.133 | 0.84 |
| 30_E | 122_N | 1.131 | 0.84 |
| 688_V | 710_R | 1.131 | 0.84 |
| 420_M | 425_N | 1.130 | 0.84 |
| 781_L | 784_L | 1.128 | 0.84 |
| 336_L | 345_F | 1.127 | 0.83 |
| 15_S | 19_N | 1.126 | 0.83 |
| 362_L | 369_L | 1.118 | 0.83 |
| 287_D | 315_R | 1.118 | 0.83 |
| 418_S | 423_S | 1.118 | 0.83 |
| 72_R | 80_D | 1.117 | 0.83 |
| 498_P | 501_F | 1.116 | 0.83 |
| 197_A | 330_K | 1.115 | 0.83 |
| 345_F | 350_F | 1.113 | 0.82 |
| 869_G | 872_N | 1.111 | 0.82 |
| 863_L | 866_V | 1.110 | 0.82 |
| 74_L | 78_I | 1.110 | 0.82 |
| 431_L | 480_E | 1.105 | 0.82 |
| 444_N | 502_K | 1.105 | 0.82 |
| 506_V | 510_I | 1.104 | 0.82 |
| 900_R | 907_P | 1.102 | 0.82 |
| 269_V | 273_V | 1.102 | 0.82 |
| 586_L | 603_M | 1.101 | 0.81 |
| 418_S | 425_N | 1.098 | 0.81 |
| 295_R | 298_S | 1.097 | 0.81 |
| 452_L | 501_F | 1.097 | 0.81 |
| 184_G | 188_S | 1.097 | 0.81 |
| 32_D | 70_N | 1.096 | 0.81 |
| 34_M | 44_F | 1.093 | 0.81 |
| 455_M | 459_Q | 1.093 | 0.81 |
| 32_D | 35_K | 1.093 | 0.81 |
| 888_L | 892_I | 1.090 | 0.81 |
| 726_D | 731_I | 1.090 | 0.81 |
| 20_E | 27_V | 1.090 | 0.81 |
| 182_L | 213_I | 1.089 | 0.80 |
| 202_G | 420_M | 1.089 | 0.80 |
| 311_M | 427_L | 1.088 | 0.80 |
| 785_G | 809_S | 1.083 | 0.80 |
| 447_M | 502_K | 1.083 | 0.80 |
| 315_R | 320_A | 1.083 | 0.80 |
| 36_K | 131_S | 1.083 | 0.80 |
| 164_S | 167_F | 1.080 | 0.80 |
| 47_D | 63_L | 1.079 | 0.80 |
| 48_T | 67_F | 1.078 | 0.80 |
| 418_S | 421_F | 1.076 | 0.79 |
| 48_T | 64_F | 1.076 | 0.79 |
| 40_I | 70_N | 1.075 | 0.79 |
| 84_E | 117_K | 1.075 | 0.79 |
| 455_M | 565_L | 1.075 | 0.79 |
| 230_T | 287_D | 1.073 | 0.79 |
| 649_L | 652_L | 1.072 | 0.79 |
| 34_M | 78_I | 1.072 | 0.79 |
| 430_P | 480_E | 1.071 | 0.79 |
| 179_K | 216_S | 1.070 | 0.79 |
| 561_L | 564_L | 1.070 | 0.79 |
| 37_E | 45_L | 1.069 | 0.79 |
| 419_I | 428_P | 1.068 | 0.79 |
| 15_S | 18_E | 1.068 | 0.79 |
| 314_T | 424_F | 1.067 | 0.79 |
| 459_Q | 520_F | 1.065 | 0.78 |
| 631_T | 654_Y | 1.063 | 0.78 |
| 80_D | 584_R | 1.063 | 0.78 |
| 201_M | 484_R | 1.062 | 0.78 |
| 443_V | 505_D | 1.061 | 0.78 |
| 378_L | 385_S | 1.061 | 0.78 |
| 3_S | 7_D | 1.060 | 0.78 |
| 462_V | 477_Y | 1.059 | 0.78 |
| 127_S | 134_R | 1.055 | 0.77 |
| 396_W | 399_V | 1.055 | 0.77 |
| 417_R | 421_F | 1.053 | 0.77 |
| 80_D | 543_R | 1.052 | 0.77 |
| 416_V | 428_P | 1.052 | 0.77 |
| 1_M | 4_A | 1.051 | 0.77 |
| 434_C | 442_P | 1.050 | 0.77 |
| 37_E | 134_R | 1.050 | 0.77 |
| 235_Y | 384_G | 1.048 | 0.77 |
| 313_T | 427_L | 1.046 | 0.77 |
| 417_R | 420_M | 1.045 | 0.77 |
| 310_V | 313_T | 1.045 | 0.77 |
| 449_R | 453_I | 1.045 | 0.77 |
| 506_V | 509_E | 1.044 | 0.76 |
| 490_I | 502_K | 1.043 | 0.76 |
| 446_R | 491_L | 1.042 | 0.76 |
| 281_Y | 307_G | 1.042 | 0.76 |
| 292_G | 295_R | 1.041 | 0.76 |
| 211_A | 228_W | 1.041 | 0.76 |
| 276_L | 281_Y | 1.039 | 0.76 |
| 81_I | 85_F | 1.038 | 0.76 |
| 6_V | 13_I | 1.037 | 0.76 |
| 10_I | 14_L | 1.037 | 0.76 |
| 241_F | 269_V | 1.036 | 0.76 |
| 163_S | 167_F | 1.036 | 0.76 |
| 183_I | 186_L | 1.034 | 0.75 |
| 319_V | 424_F | 1.034 | 0.75 |
| 248_F | 275_Y | 1.034 | 0.75 |
| 79_E | 562_H | 1.033 | 0.75 |
| 382_S | 486_M | 1.033 | 0.75 |
| 238_E | 242_R | 1.032 | 0.75 |
| 469_K | 687_Q | 1.032 | 0.75 |
| 383_L | 387_M | 1.032 | 0.75 |
| 20_E | 24_L | 1.031 | 0.75 |
| 205_G | 208_T | 1.031 | 0.75 |
| 624_H | 648_K | 1.030 | 0.75 |
| 281_Y | 304_G | 1.029 | 0.75 |
| 900_R | 905_H | 1.029 | 0.75 |
| 20_E | 26_G | 1.028 | 0.75 |
| 417_R | 423_S | 1.028 | 0.75 |
| 890_E | 893_R | 1.027 | 0.75 |
| 362_L | 384_G | 1.025 | 0.75 |
| 72_R | 518_E | 1.023 | 0.74 |
| 132_M | 137_H | 1.023 | 0.74 |
| 30_E | 111_R | 1.022 | 0.74 |
| 312_M | 315_R | 1.021 | 0.74 |
| 198_V | 203_G | 1.019 | 0.74 |
| 4_A | 9_G | 1.018 | 0.74 |
| 315_R | 427_L | 1.017 | 0.74 |
| 41_M | 284_V | 1.017 | 0.74 |
| 38_L | 385_S | 1.016 | 0.74 |
| 799_I | 808_L | 1.016 | 0.74 |
| 350_F | 358_R | 1.014 | 0.73 |
| 182_L | 826_Q | 1.012 | 0.73 |
| 373_C | 379_A | 1.010 | 0.73 |
| 232_S | 444_N | 1.010 | 0.73 |
| 202_G | 423_S | 1.010 | 0.73 |
| 382_S | 385_S | 1.010 | 0.73 |
| 705_M | 708_L | 1.009 | 0.73 |
| 260_L | 263_L | 1.008 | 0.73 |
| 33_K | 37_E | 1.008 | 0.73 |
| 710_R | 783_Y | 1.008 | 0.73 |
| 14_L | 18_E | 1.007 | 0.73 |
| 623_F | 626_L | 1.006 | 0.73 |
| 629_L | 634_T | 1.006 | 0.73 |
| 201_M | 565_L | 1.005 | 0.72 |
| 441_F | 444_N | 1.004 | 0.72 |
| 335_L | 376_L | 1.002 | 0.72 |
| 28_H | 32_D | 1.002 | 0.72 |
| 79_E | 83_D | 1.001 | 0.72 |
| 646_M | 655_L | 1.001 | 0.72 |
| 441_F | 452_L | 1.000 | 0.72 |
Prob = P(contact | scaled_score, seq/len).
Scaled Score = (raw_score/average(raw_scores)).
- Text file of contact predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
- Import to GREMLIN BETA - features includes ability to upload PDB and latest P(contact) calculation based on eLife 2015 fitting to PDB data.
GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled Score > 1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-position alignment confidence. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | M | Cov | P(%) | HHΔ | |
| 4kxfK | 8 | 0.7765 | 100 | 0.699 | Contact Map |
| 2a5yB | 2 | 0.5032 | 100 | 0.758 | Contact Map |
| 1vt4I | 8 | 0.568 | 100 | 0.766 | Contact Map |
| 3sfzA | 1 | 0.6577 | 100 | 0.767 | Contact Map |
| 1z6tA | 4 | 0.5972 | 100 | 0.844 | Contact Map |
| 4u09A | 2 | 0 | 100 | 0.857 | Contact Map |
| 4u06A | 1 | 0 | 100 | 0.858 | Contact Map |
| 4u08A | 2 | 0 | 100 | 0.858 | Contact Map |
| 4mn8A | 1 | 0.4266 | 100 | 0.864 | Contact Map |
| 1o6vA | 2 | 0.4104 | 100 | 0.865 | Contact Map |
Cov = coverage of hit
P(%) = probability
Sequence Conservation (Image Generated using WebLogo v3)